Citrus Sinensis ID: 010064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccccccccccEEEccHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccHHHHHHcccHHHHHcccccccccccccccccccHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHcccHHEcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcHHccHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHccccccccHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHEEEccccccccc
Coil and Loop (DISEMBL)
MAKIHQNNVRSLIlerndgptsaadghhhFRLWTAFSGAAFRRKIFDAvscggssrygreilddegislptpkaktemesrgvdsekgngrkpekqkeakgcvsksEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLgaipplagmldfqlaDSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLiespvapnpsvsEAIVANFLglsaldsnkpiigssgavPFLVKTLknsdkkvspQAKQDALRALYnlsifpsnisfILETDLIRYLLEMLGDMELSERILSILSNlvstpegrkaisrvpdafPILVDVlnwtdspgcqekASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLrvdkgkqvsgtygGNLVAAAAvsapicgsssststnpngvakeCLEEEEDMMSEEKKAVKQLVQQSLQNNMKRIVKranlpqdfvpsehfkslttsstskslpf
Flexible Loop (DISEMBL)
MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVscggssrygreilddegislptpkaktemesrgvdsekgngrkpekqkeakgcvsksekLLDLLNLAEGEAASEIKKKEEALEELKIVVkdlqseseeqrREAASkvrslakensetrVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSnlvstpegrkAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICgsssststnpngvAKECLEEEEDMMSEEKKAVKQLVQQSLQNNMKRIVKRANLpqdfvpsehfkslttsstskslpf
Low Complexity Region (SEG)
MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLaegeaaseikkkeealeelkiVVKDLqseseeqrreaasKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIasalleltllgstlaQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGsssststNPNGVAkecleeeedmmseekkAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFkslttsstskslPF
Disordered region (IsUnstruct)
*************************GHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREI***********************************************************************************************************TLAMLGAIPPLAGML************YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL**************ALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPIC*****************************************************************************
Disordered Region (DISOPRED)
**********************************************************************************************************************************LEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL*************************************NGVA****************************************QDFVPS*****************
Disordered Region (DISEMBL)
MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREILDDEGISLPTPKA******************************KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ*********************SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK***********QDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSA**************GVAKECLE*************KQLVQQSLQNNMKRIVKRANLPQDFVPSEHF**************
Disordered Region (DISPRO)
***I*QNNVRS*I***N*********HHHFRLWTAFSGAAFRRKIFDAVSCGGSSR**RE*L****ISLPTPKA*TEMESRGVDSEKGNGRKPEKQKEAKG*************************KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVS***GG**V*A*AV********SSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTT*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAxxxxxxxxxxxxxxxxxxxxxxxxSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	519	2.2.26 [Sep-21-2011]
Q5VRH9	611	U-box domain-containing p	no	no	0.512	0.435	0.334	1e-28
O22193	826	U-box domain-containing p	no	no	0.535	0.336	0.318	2e-28
Q8GUG9	612	U-box domain-containing p	no	no	0.520	0.441	0.321	2e-27
Q9SNC6	660	U-box domain-containing p	no	no	0.489	0.384	0.360	4e-27
Q8GWV5	760	U-box domain-containing p	no	no	0.522	0.356	0.320	1e-25
Q9C9A6	628	U-box domain-containing p	no	no	0.518	0.428	0.343	2e-25
Q9ZV31	654	U-box domain-containing p	no	no	0.524	0.415	0.336	5e-25
Q9CAG5	782	U-box domain-containing p	no	no	0.524	0.347	0.295	2e-24
Q5XEZ8	707	U-box domain-containing p	no	no	0.535	0.393	0.295	6e-24
O48700	771	U-box domain-containing p	no	no	0.666	0.448	0.278	6e-24

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/278 (33%), Positives = 155/278 (55%), Gaps = 12/278 (4%)

Query: 141 LQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLN 200
           L+S +++++R AA ++R LAK N   R+ +A  GAIP L  +L      +Q  ++ ALLN
Sbjct: 332 LRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLN 391

Query: 201 LGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSG 260
           L I  + NKA+IV + A+ K+++++++         E   A    LS +D NK  IG++G
Sbjct: 392 LSIHEN-NKASIVDSHAIPKIVEVLKTGSM---ETRENAAATLFSLSVVDENKVTIGAAG 447

Query: 261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME-- 318
           A+P L+  L +     SP+ K+DA  A++NL I+  N    ++  ++ +L+  L D    
Sbjct: 448 AIPPLINLLCDG----SPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGG 503

Query: 319 LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378
           + +  LS+LS L   PEG+  I+R  +  P LV+V+  T SP  +E A+ +L ++     
Sbjct: 504 MIDEALSLLSILAGNPEGKIVIARS-EPIPPLVEVIK-TGSPRNRENAAAILWLLCSADT 561

Query: 379 GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416
               A   AG+  AL EL+  G+  A+++AS ILE + 
Sbjct: 562 EQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMH 599

Possesses E3 ubiquitin-protein ligase in vitro.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 164/289 (56%), Gaps = 11/289 (3%)

Query: 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLA 188
           E   ++K +V++L+S S + +R+A +++R LAK N + R+ +   GAI  L  +L    +
Sbjct: 538 EVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDS 597

Query: 189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248
            +Q +++ ALLNL I ND NK AI  AGA+  ++ ++E+  +      E   A    LS 
Sbjct: 598 ATQENAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSS---EAKENSAATLFSLSV 653

Query: 249 LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIR 308
           ++ NK  IG SGA+  LV  L N     +P+ K+DA  AL+NLSI   N + I+++  +R
Sbjct: 654 IEENKIKIGQSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIHQENKAMIVQSGAVR 709

Query: 309 YLLEMLGDME-LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367
           YL++++     + ++ +++L+NL + PEGR AI +     P+LV+V+    + G +E A+
Sbjct: 710 YLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQ-EGGIPLLVEVVELGSARG-KENAA 767

Query: 368 YVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416
             L+ ++  S      +++ G    L+ L+  G+  A+++A  +L   R
Sbjct: 768 AALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFR 816

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 157/289 (54%), Gaps = 19/289 (6%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           ++ +V+ L S S E RR A S++RSL+K +++ R+ +A  GAIP L  +L  +   +Q +
Sbjct: 333 IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQEN 392

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253
           ++  +LNL I  + NK  I+ AGAV  +++++    A      E   A    LS  D NK
Sbjct: 393 AITCVLNLSIYEN-NKELIMFAGAVTSIVQVLR---AGTMEARENAAATLFSLSLADENK 448

Query: 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEM 313
            IIG SGA+P LV  L+N     +P+ K+DA  AL+NL I+  N    +   ++  L++M
Sbjct: 449 IIIGGSGAIPALVDLLENG----TPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKM 504

Query: 314 LGD---MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370
           L D     + +  L+ILS L +  + + AI +  +  P L+ +L  TD    +E A+ +L
Sbjct: 505 LSDSTRHRMVDEALTILSVLANNQDAKSAIVKA-NTLPALIGILQ-TDQTRNRENAAAIL 562

Query: 371 MVMAHKSYGDRQAMIEAGIASA---LLELTLLGSTLAQKRASRILECLR 416
           + +  +   D + +I  G   A   L++L+  G+   +++A  +LE LR
Sbjct: 563 LSLCKR---DTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/272 (36%), Positives = 149/272 (54%), Gaps = 18/272 (6%)

Query: 147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGND 206
           E +R AA ++R LAK N++ RV +A  GAIP L G+L    +  Q  S+ ALLNL I  +
Sbjct: 367 EDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICEN 426

Query: 207 LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLV 266
            NK AIV AGA+  ++++++     +    E   A    LS +D NK  IG+ GA+P LV
Sbjct: 427 -NKGAIVSAGAIPGIVQVLKK---GSMEARENAAATLFSLSVIDENKVTIGALGAIPPLV 482

Query: 267 KTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERIL 324
             L    ++     K+DA  AL+NL I+  N    +   +I  L  +L +    + +  L
Sbjct: 483 VLLNEGTQR----GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEAL 538

Query: 325 SILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAM 384
           +IL+ L S PEG KAI    DA P LV+ +  T SP  +E A+ VL+   H   GD Q +
Sbjct: 539 AILAILSSHPEG-KAIIGSSDAVPSLVEFIR-TGSPRNRENAAAVLV---HLCSGDPQHL 593

Query: 385 IEA---GIASALLELTLLGSTLAQKRASRILE 413
           +EA   G+   L++L   G+   +++A+++LE
Sbjct: 594 VEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLE 625

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 158/281 (56%), Gaps = 10/281 (3%)

Query: 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLY 196
           +V+DL+S S + +  AA+++R L   + E RV +   GAI PL  +L  +   +Q  ++ 
Sbjct: 477 LVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVT 536

Query: 197 ALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPII 256
           ALLNL I ++LNKA IV+ GA+  ++ ++ +    N    E   A+   LS L  N+  I
Sbjct: 537 ALLNLSI-SELNKAMIVEVGAIEPLVHVLNT---GNDRAKENSAASLFSLSVLQVNRERI 592

Query: 257 GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG- 315
           G S A    ++ L N   K + + K+DA  AL+NLSI   N + I++   ++YL+E+L  
Sbjct: 593 GQSNAA---IQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDP 649

Query: 316 DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAH 375
           D+E+ ++ +++L+NL +  EGR+AI R     P+LV+ ++     G +E A+ VL+ +  
Sbjct: 650 DLEMVDKAVALLANLSAVGEGRQAIVR-EGGIPLLVETVDLGSQRG-KENAASVLLQLCL 707

Query: 376 KSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416
            S      +++ G    L+ L+  G+  A+++A ++L   R
Sbjct: 708 NSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFR 748

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 22/291 (7%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQ-LADSQI 192
           ++ +V  L S+S E RR A S++RSL+K +++ R+ +A  GAIP L  +L      ++Q 
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQE 402

Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252
           +++  +LNL I  + NK  I+ AGAV  ++ ++    A +    E   A    LS  D N
Sbjct: 403 NAVTCILNLSI-YEHNKELIMLAGAVTSIVLVLR---AGSMEARENAAATLFSLSLADEN 458

Query: 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE 312
           K IIG+SGA+  LV  L+      S + K+DA  AL+NL I+  N    +   +++ L++
Sbjct: 459 KIIIGASGAIMALVDLLQYG----SVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVK 514

Query: 313 MLGDMELSERI----LSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY 368
           ML D   SER+    L+ILS L S    + AI R  +A P L+D L   D P  +E A+ 
Sbjct: 515 MLTDSS-SERMADEALTILSVLASNQVAKTAILRA-NAIPPLIDCLQ-KDQPRNRENAAA 571

Query: 369 VLMVMAHKSYGDRQAMIEAGIASA---LLELTLLGSTLAQKRASRILECLR 416
           +L+ +  +   D + +I  G   A   L+EL+  G+  A+++A+ +LE LR
Sbjct: 572 ILLCLCKR---DTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLR 619

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  116 bits (290), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 22/294 (7%)

Query: 141 LQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALL 199
           L S+  E RR AA ++R LAK+N+  RV +A  GAIP L  +L     + +Q  ++ ++L
Sbjct: 364 LTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSIL 423

Query: 200 NLGIGNDLNKAAIV-KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS 258
           NL I  + NK  IV  +GAV  ++ +++     +    E   A    LS +D NK  IG+
Sbjct: 424 NLSICQE-NKGKIVYSSGAVPGIVHVLQK---GSMEARENAAATLFSLSVIDENKVTIGA 479

Query: 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME 318
           +GA+P LV  L       S + K+DA  AL+NL IF  N    +   L+  L+ +L + E
Sbjct: 480 AGAIPPLVTLLSEG----SQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE 535

Query: 319 --LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK 376
             + +  LSIL+ L S P+G+  +    DA P+LVD +  + SP  +E ++ VL+   H 
Sbjct: 536 SGMVDESLSILAILSSHPDGKSEVG-AADAVPVLVDFIR-SGSPRNKENSAAVLV---HL 590

Query: 377 SYGDRQAMIEA---GIASALLELTLLGSTLAQKRASRILECLRV--DKGKQVSG 425
              ++Q +IEA   GI   L+E+   G+   +++A+++L       D+ KQ SG
Sbjct: 591 CSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSG 644

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 152/288 (52%), Gaps = 16/288 (5%)

Query: 142 QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML----DFQLADSQISSLYA 197
           + E  E++ +   K+R L K++ E R+ +   G +  L   L    D   A +Q S   A
Sbjct: 434 EEEGLEKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMA 493

Query: 198 LLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG 257
           L NL + N+ NK  ++ +G +  + K+I S  +       +  A +L LS LD  K +IG
Sbjct: 494 LFNLAVNNNRNKELMLTSGVIRLLEKMISSAESHG-----SATALYLNLSCLDEAKSVIG 548

Query: 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--- 314
           SS AVPFLV+ L+   K++  Q K DAL ALYNLS +  NI  +L +++I+ L  +L   
Sbjct: 549 SSQAVPFLVQLLQ---KEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLAST 605

Query: 315 GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374
           G+    E+ L++L NL S+ EG+            L  VL+  D+   QE+A   L+++ 
Sbjct: 606 GENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE-QEQAVSCLLILC 664

Query: 375 HKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQ 422
           +      Q +++ G+  +L+ +++ G+   ++++ ++L   R ++ ++
Sbjct: 665 NGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQR 712

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  112 bits (281), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 154/288 (53%), Gaps = 10/288 (3%)

Query: 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           E+K ++ DL+S S + +REA +++R LA+ +++ R+ +A   AIP L  +L       Q 
Sbjct: 422 EVKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQA 481

Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252
            ++  LLNL I ND NK+ I ++GA+  ++ ++++        + A  A    LS ++  
Sbjct: 482 DAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSA--ATLFSLSVIEEY 538

Query: 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE 312
           K  IG +GA+  LV  L +     S   K+DA  AL+NLSI   N + ++E   +RYL+E
Sbjct: 539 KTEIGEAGAIEPLVDLLGSG----SLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVE 594

Query: 313 MLGD-MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371
           ++     + E+ + +L+NL +  EG+ AI       P+LV+V+    + G +E A+  L+
Sbjct: 595 LMDPAFGMVEKAVVVLANLATVREGKIAIGE-EGGIPVLVEVVELGSARG-KENATAALL 652

Query: 372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419
            +   S      +I  G+   L+ LT  G+   +++A  +L+  +  +
Sbjct: 653 QLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHR 700

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 181/391 (46%), Gaps = 45/391 (11%)

Query: 65  EGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEI 124
           + + L TPK     + R V  E+ +  + E+Q++ K             N A  E  SEI
Sbjct: 378 DSVGLCTPK-----DIRVVPLEESSTIESERQQKEK-------------NNAPDEVDSEI 419

Query: 125 KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD 184
              E   + L IV K+   E   ++ +    VR L K+N E R+ +   G +      L+
Sbjct: 420 NVLEGYQDILAIVDKE---EDLAKKCKVVENVRILLKDNEEARILMGANGFVEAFLQFLE 476

Query: 185 FQLAD----SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIV 240
             + D    +Q +   AL NL + N+ NK  ++ +G +  + K+I    +  P+      
Sbjct: 477 SAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISCSQSQGPAT----- 531

Query: 241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISF 300
           A +L LS L+  KP+IGSS AV F V  L    K    Q K DAL ALYNLS +  NI  
Sbjct: 532 ALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKT---QCKLDALHALYNLSTYSPNIPT 588

Query: 301 ILETDLIRYL--LEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD 358
           +L +++I+ L  L   G+    E+ L++L NL S+ EG++ +         L  VL+  D
Sbjct: 589 LLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGD 648

Query: 359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418
           +   QE+A   L+++   S    Q +++ G+  +L+ +++ GS   + ++ ++L   R  
Sbjct: 649 TVE-QEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQ 707

Query: 419 KGKQVSG---------TYGGNLVAAAAVSAP 440
           + +             T    +   A VSAP
Sbjct: 708 RHRDQPSPNKEEAPRKTVSAPMAIPAPVSAP 738

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
255548766	510	ubiquitin-protein ligase, putative [Rici	0.963	0.980	0.717	0.0
224089352	492	predicted protein [Populus trichocarpa]	0.947	1.0	0.714	0.0
297798774	517	armadillo/beta-catenin repeat family pro	0.961	0.965	0.675	0.0
15236577	518	armadillo/beta-catenin-like repeat-conta	0.959	0.961	0.664	1e-179
449493326	506	PREDICTED: U-box domain-containing prote	0.961	0.986	0.665	1e-172
449521862	502	PREDICTED: U-box domain-containing prote	0.965	0.998	0.651	1e-172
449455533	502	PREDICTED: U-box domain-containing prote	0.965	0.998	0.648	1e-171
357466041	495	U-box domain-containing protein [Medicag	0.947	0.993	0.651	1e-170
225430354	497	PREDICTED: U-box domain-containing prote	0.944	0.985	0.678	1e-163
356507311	482	PREDICTED: U-box domain-containing prote	0.903	0.973	0.618	1e-158

>gi|255548766|ref|XP_002515439.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223545383|gb|EEF46888.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/514 (71%), Positives = 411/514 (79%), Gaps = 14/514 (2%)

Query: 7   NNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGREILDDEG 66
           NN+ SLIL  ND  + A+    HFRLWT+    +FRRKIFDAVSCGGSSRY     +D+ 
Sbjct: 10  NNIGSLIL--NDRHSPASTTSRHFRLWTS----SFRRKIFDAVSCGGSSRYRHH--EDDF 61

Query: 67  ISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKK 126
            S  T    T   +    +        EK +  K    KSEKL DLL++AE E+  E +K
Sbjct: 62  ASTTTAATATTATATATTTATTTTNAIEKTRRMKN--GKSEKLSDLLSVAEAESEIETRK 119

Query: 127 KEEALEELKIVVKDLQSESEEQRRE-AASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF 185
           K E LEELK +VK+LQ E++ +R+E AAS+VR LAKE+S  RVTLA+LGAIPPL  M+DF
Sbjct: 120 KVEELEELKSLVKELQIENDSKRKEEAASRVRLLAKEDSGVRVTLALLGAIPPLVAMIDF 179

Query: 186 QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLG 245
             AD QI+SLYALLNL I ND NKAAIVKAGAVHKMLK+IE P  P PSVSEAIVANFLG
Sbjct: 180 DNADLQIASLYALLNLAIANDANKAAIVKAGAVHKMLKIIELPYPPKPSVSEAIVANFLG 239

Query: 246 LSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD 305
           LSALDSNKPIIGSSGA+PFLV TL++ D K S QAKQDA+RALYNLSIF SN+SFI+E +
Sbjct: 240 LSALDSNKPIIGSSGAIPFLVNTLRDLDHKCSIQAKQDAVRALYNLSIFSSNVSFIVEAN 299

Query: 306 LIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
           LI +L+  LGDME+SERILSILSNLVSTPEGRKAIS + DAF IL+DVLNWTDSPGCQEK
Sbjct: 300 LIPFLMNTLGDMEVSERILSILSNLVSTPEGRKAISTMRDAFTILIDVLNWTDSPGCQEK 359

Query: 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSG 425
           ASY+LMVMAHK+YGDRQAMIEAGI SALLELTLLGSTLAQKRASRILECLRVDKGKQ+S 
Sbjct: 360 ASYILMVMAHKAYGDRQAMIEAGIVSALLELTLLGSTLAQKRASRILECLRVDKGKQISD 419

Query: 426 TYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQQSLQNN 485
            YGGNL   AAVSAPI GSSSS S NPNGV+KE LEE ED MSEEKKAVKQLVQQSLQ N
Sbjct: 420 HYGGNL--GAAVSAPIYGSSSS-SANPNGVSKEFLEEAEDTMSEEKKAVKQLVQQSLQTN 476

Query: 486 MKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           M RIVKRANLPQDFVPSEHFKSLT SSTSKSLPF
Sbjct: 477 MMRIVKRANLPQDFVPSEHFKSLTASSTSKSLPF 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089352|ref|XP_002308701.1| predicted protein [Populus trichocarpa] gi|222854677|gb|EEE92224.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/519 (71%), Positives = 415/519 (79%), Gaps = 27/519 (5%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK H NN+ SL+L+      +A   HH  RLWTAFS     RKIFDAVSCGGSSRY R 
Sbjct: 1   MAKCHTNNIGSLLLDHTSTTATATGTHHS-RLWTAFS-----RKIFDAVSCGGSSRY-RH 53

Query: 61  ILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEA 120
             DD    +P+        +  V  EK N              +  +KL DLL++AE E+
Sbjct: 54  YEDD----IPSFTTTATNATASVSREKQNK-------------TALKKLSDLLSMAEAES 96

Query: 121 ASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180
            SE +KK E LE +K VV++LQ +   +RREAA  VR L KE+ + RVTL+MLGAIPPL 
Sbjct: 97  ESETRKKVEVLEGMKRVVRELQVDEGVKRREAACNVRLLCKEDGKARVTLSMLGAIPPLV 156

Query: 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIV 240
           GMLD +  + QI +LYALLNLGIGND+NKAAIVKAGAVHKMLK+IESP A NPSVSEAIV
Sbjct: 157 GMLDLEDFECQIDALYALLNLGIGNDVNKAAIVKAGAVHKMLKIIESPNAANPSVSEAIV 216

Query: 241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISF 300
           ANFLGLSALDSNKPIIGSSGA+PFLV +LK+ D K   QA+QDALRALYNLSI PSNISF
Sbjct: 217 ANFLGLSALDSNKPIIGSSGAIPFLVNSLKDLDHKNRSQAQQDALRALYNLSISPSNISF 276

Query: 301 ILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSP 360
           ILETDLI +L+  LGDME+SER+LSILSN VSTPEGRKAIS +PDAFPILVDVLNWTDSP
Sbjct: 277 ILETDLISFLMGSLGDMEVSERVLSILSNAVSTPEGRKAISAMPDAFPILVDVLNWTDSP 336

Query: 361 GCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKG 420
           GCQEKASY+LMVMAHK+YGDRQAMIEAGI S+LLELTLLGSTLAQKRASRILECLRVDKG
Sbjct: 337 GCQEKASYILMVMAHKAYGDRQAMIEAGIVSSLLELTLLGSTLAQKRASRILECLRVDKG 396

Query: 421 KQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQQ 480
           KQVSG YGGN+   AAVSAPI G+ SS S+NPN V+KECLEE EDMMSEEKKAVKQLVQQ
Sbjct: 397 KQVSGNYGGNM--GAAVSAPIYGTPSS-SSNPNLVSKECLEETEDMMSEEKKAVKQLVQQ 453

Query: 481 SLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           SLQNNM+RIVKRANLPQDFVPSEHFKSLT+SSTSKSLPF
Sbjct: 454 SLQNNMRRIVKRANLPQDFVPSEHFKSLTSSSTSKSLPF 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798774|ref|XP_002867271.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297313107|gb|EFH43530.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/537 (67%), Positives = 418/537 (77%), Gaps = 38/537 (7%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK H+NN+ SLIL+R    +S++   +HFRLW+ FS + FRRKI DAVSCGGSSRY  E
Sbjct: 1   MAKCHRNNIGSLILDRAPSTSSSSTSGNHFRLWSTFSRSTFRRKIVDAVSCGGSSRYRHE 60

Query: 61  IL--DDEGISLPTPKAKTEMESRGVDSEKG----NGRKPEKQKEAKGCVSKSEKLLDLLN 114
           +   DDEG S  T  AK+ + S+   +       NG   E++ +      KSEKL DLLN
Sbjct: 61  LREEDDEG-SYVTVTAKSTVASKDAKANTIGAALNGVAFEEKSK------KSEKLCDLLN 113

Query: 115 LAEGEAASEIKKKEEALEELKIVVKDLQS---------ESEEQRRE--AASKVRSLAKEN 163
           LAE EA  E KKKEEALE LK VV++LQS         + E+ R++  AAS+VR LAKE+
Sbjct: 114 LAEVEADVETKKKEEALEVLKRVVRELQSAAAARGDNDDVEDYRKKLTAASEVRLLAKED 173

Query: 164 SETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML 222
           SE RVTLAMLGAIPPL  M+D  ++ D+QI SLYALLNLGIGND NKAAIVKAGAVHKML
Sbjct: 174 SEARVTLAMLGAIPPLVSMIDDSRIVDAQIDSLYALLNLGIGNDTNKAAIVKAGAVHKML 233

Query: 223 KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ 282
           KLIESP AP+  ++EA+VANFLGLSALDSNKPIIGSSGA+ FLVKTL+N D+  S QA++
Sbjct: 234 KLIESPNAPDQEIAEAVVANFLGLSALDSNKPIIGSSGAIIFLVKTLQNLDETSSSQARE 293

Query: 283 DALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISR 342
           DALRALYNLSI+  N+SFILETDLI YLL  LGDME+SERIL+ILSNLV+ PEGRKAIS 
Sbjct: 294 DALRALYNLSIYQPNVSFILETDLITYLLNTLGDMEVSERILAILSNLVAVPEGRKAISL 353

Query: 343 VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST 402
           V DAFP+LVDVLNWTDSPGCQEKA+Y+LM+MAHK YGDRQAMIEAGI SALLELTLLGS 
Sbjct: 354 VCDAFPVLVDVLNWTDSPGCQEKATYILMLMAHKGYGDRQAMIEAGIESALLELTLLGSA 413

Query: 403 LAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEE 462
           LAQKRASRILECLRVDKGKQV  + G    +  A+SAPI G      T  NG+     EE
Sbjct: 414 LAQKRASRILECLRVDKGKQVLDSTG----SCGALSAPIYG------TRDNGLDH---EE 460

Query: 463 EEDMMSEEKKAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
            + MMSEE+KAVKQLVQQSLQ+NMKRIVKRANLPQDFVPSEHFKSL+ SSTSKSLPF
Sbjct: 461 NDLMMSEERKAVKQLVQQSLQSNMKRIVKRANLPQDFVPSEHFKSLSLSSTSKSLPF 517

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236577|ref|NP_194917.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|334187073|ref|NP_001190883.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|4584528|emb|CAB40759.1| putative protein [Arabidopsis thaliana] gi|7270092|emb|CAB79907.1| putative protein [Arabidopsis thaliana] gi|110736926|dbj|BAF00420.1| hypothetical protein [Arabidopsis thaliana] gi|190341119|gb|ACE74718.1| At4g31890 [Arabidopsis thaliana] gi|332660574|gb|AEE85974.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332660575|gb|AEE85975.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 358/539 (66%), Positives = 412/539 (76%), Gaps = 41/539 (7%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK H+NN+ SLIL+R    +S++   +HFRLW+ FS + FRRKI DAVSCGGSSRY  E
Sbjct: 1   MAKCHRNNIGSLILDRAPSTSSSSTSGYHFRLWSTFSRSTFRRKIVDAVSCGGSSRYRHE 60

Query: 61  IL--DDEGISLPTPKAKTEMESRGVDSEKG------NGRKPEKQKEAKGCVSKSEKLLDL 112
           +   DDEG S  T  AK+ + S   D++        NG   E+  +      KSEKL DL
Sbjct: 61  LREEDDEG-SYVTVTAKSTVASSK-DAKANTIGAALNGVAFEETSK------KSEKLCDL 112

Query: 113 LNLAEGEAASEIKKKEEALEELKIVVKDLQSESE-----------EQRREAASKVRSLAK 161
           LNLAE EA  E  KKEEALE LK VV++LQS +             ++  AAS+VR LAK
Sbjct: 113 LNLAEVEADVETMKKEEALEVLKRVVRELQSAAAAREDNDDGGDCRKKITAASEVRLLAK 172

Query: 162 ENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHK 220
           E+SE RVTLAMLGAIPPL  M+D  ++ D+QI+SLYALLNLGIGND NKAAIVKAGAVHK
Sbjct: 173 EDSEARVTLAMLGAIPPLVSMIDDSRIVDAQIASLYALLNLGIGNDANKAAIVKAGAVHK 232

Query: 221 MLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQA 280
           MLKLIESP  P+  ++EA+VANFLGLSALDSNKPIIGSSGA+ FLVKTL+N D+  S QA
Sbjct: 233 MLKLIESPNTPDQEIAEAVVANFLGLSALDSNKPIIGSSGAIIFLVKTLQNLDETSSSQA 292

Query: 281 KQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAI 340
           ++DALRALYNLSI+  N+SFILETDLI YLL  LGDME+SERIL+ILSNLV+ PEGRKAI
Sbjct: 293 REDALRALYNLSIYQPNVSFILETDLITYLLNTLGDMEVSERILAILSNLVAVPEGRKAI 352

Query: 341 SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG 400
             V DAFP+LVDVLNWTDSPGCQEKA+Y+LM+MAHK YGDRQ MIEAGI SALLELTLLG
Sbjct: 353 GLVCDAFPVLVDVLNWTDSPGCQEKATYILMLMAHKGYGDRQVMIEAGIESALLELTLLG 412

Query: 401 STLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECL 460
           S LAQKRASRILECLRVDKGKQV  + G    +  A+SAPI G      T  NG+     
Sbjct: 413 SALAQKRASRILECLRVDKGKQVLDSTG----SCGALSAPIYG------TRDNGLDH--- 459

Query: 461 EEEEDMMSEEKKAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           EE + MMSEE+KAVKQLVQQSLQ+NMKRIVKRANLPQDFVPSEHFKSL+ SSTSKSLPF
Sbjct: 460 EENDLMMSEERKAVKQLVQQSLQSNMKRIVKRANLPQDFVPSEHFKSLSLSSTSKSLPF 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493326|ref|XP_004159256.1| PREDICTED: U-box domain-containing protein 12-like [Cucumis sativus]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 350/526 (66%), Positives = 407/526 (77%), Gaps = 27/526 (5%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGR- 59
           MAK H N + S+ L    G + A     HFR  T+FSGAAFRR+I+DAVSCGGSSRY   
Sbjct: 1   MAKCHSNTIGSVALH---GISGANAPTRHFRFCTSFSGAAFRRRIYDAVSCGGSSRYRHR 57

Query: 60  ---EILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLA 116
              EI+D++      P       SR  D ++    KP KQK   G   KSEKL+DLLNLA
Sbjct: 58  YKDEIMDED------PTMGDGSVSR--DLKEPEEEKPRKQKLGNG---KSEKLVDLLNLA 106

Query: 117 ---EGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAML 173
              E E  +E ++KE+ L+ELK  VKDLQ+E   +++ AAS VR +AKE+   R TLA+L
Sbjct: 107 DSVELENEAETRRKEDELKELKRTVKDLQAEDLGKQKSAASSVRLMAKEDLVIRGTLALL 166

Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
           GAIPPL  MLD +  +SQI++LYALLNLGIGN+ NKAAIVK G +HKMLKLI+     N 
Sbjct: 167 GAIPPLVAMLDLEDEESQIAALYALLNLGIGNNANKAAIVKVGVIHKMLKLIKLEATSNS 226

Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
           SV+EAI+ANFLGLSALDSNK +IGSSGA+PFLVK+L+N+  K+S QA+QDALRAL+NLSI
Sbjct: 227 SVAEAIIANFLGLSALDSNKGVIGSSGAIPFLVKSLQNTHCKISNQARQDALRALFNLSI 286

Query: 294 FPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDV 353
             SNI  ILETDLI +LL MLGDME+SERILSILSN+VSTPEGR+AIS VPDAFPILVDV
Sbjct: 287 ASSNIPIILETDLIPFLLNMLGDMEVSERILSILSNVVSTPEGRRAISIVPDAFPILVDV 346

Query: 354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE 413
           LNWTDSPGCQEK SYVLMVMAHK YG+RQ M+EAG+ SA LELTLLGS LAQKRASRILE
Sbjct: 347 LNWTDSPGCQEKGSYVLMVMAHKLYGERQTMVEAGLVSASLELTLLGSALAQKRASRILE 406

Query: 414 CLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKA 473
           CLR DKGKQVS ++GGNL   AAVSAPI G+SSS++ N     K C+EE E+ MS EKKA
Sbjct: 407 CLRYDKGKQVSESFGGNL-GGAAVSAPIIGTSSSSNCN-----KICVEESEEAMSMEKKA 460

Query: 474 VKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           VKQLVQQSLQ NM++IVKRANLPQDFVPSEHFKSLTTSSTSKSLPF
Sbjct: 461 VKQLVQQSLQYNMRKIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521862|ref|XP_004167948.1| PREDICTED: U-box domain-containing protein 7-like [Cucumis sativus]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 339/520 (65%), Positives = 394/520 (75%), Gaps = 19/520 (3%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK  +N V S++ +R    + A     HFRL   FS A+FRRKIFDAVSCGGSSRY   
Sbjct: 1   MAKCQRNEVGSVVFDRASISSPAGS---HFRLCAPFSTASFRRKIFDAVSCGGSSRYNYH 57

Query: 61  ILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNL-AEGE 119
              D  +        T + S     ++    +P++         KSEKL DLL L +  E
Sbjct: 58  --HDGNVGGGDGTVSTAIRSLSEIVKEREAARPKRSN------VKSEKLFDLLKLESSPE 109

Query: 120 AASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179
           +  E KKKEE LEE K VVK LQ E   +RR AAS VR LAKE++E R TL MLGAIPPL
Sbjct: 110 SKPETKKKEEVLEEFKRVVKKLQDEDLVERRAAASGVRLLAKEDTEARGTLGMLGAIPPL 169

Query: 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI 239
            GMLD +  +S+I+SLYALLNLGIGNDLNKAAI KAG +HKMLKLIES  +PNP VSEAI
Sbjct: 170 VGMLDLEDDESKIASLYALLNLGIGNDLNKAAIAKAGTIHKMLKLIESETSPNPPVSEAI 229

Query: 240 VANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS 299
           VANFLGLSALD+NK +IGSSGA+PFLVK L +  ++ S Q KQDALRALYNLSIFPSNI 
Sbjct: 230 VANFLGLSALDTNKLLIGSSGAIPFLVKNLYDPHQESSSQVKQDALRALYNLSIFPSNIP 289

Query: 300 FILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS 359
           FILET L+ +LL  LGDME+SER LS+LSN++ST +GRKAIS  P++FPIL+DVLNW DS
Sbjct: 290 FILETKLVPFLLNALGDMEVSERALSVLSNVISTSDGRKAISTYPNSFPILIDVLNWADS 349

Query: 360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419
           PGCQEKASY+LMVMAHKSY DRQAMIEAGI+SALLELTLLGSTLAQKRASR+LE LRVDK
Sbjct: 350 PGCQEKASYILMVMAHKSYSDRQAMIEAGISSALLELTLLGSTLAQKRASRVLESLRVDK 409

Query: 420 GKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQ 479
           GKQ+S   GGN       SAP+CGS +S  TNP   + E LE  +D++SEEKKAVKQLV+
Sbjct: 410 GKQISDHLGGN------SSAPMCGSLTSF-TNPILGSAEALEGSDDLVSEEKKAVKQLVR 462

Query: 480 QSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           QSLQNNM+RIVKRANLPQDFVPS++FKSLT+SSTSKSLPF
Sbjct: 463 QSLQNNMRRIVKRANLPQDFVPSDNFKSLTSSSTSKSLPF 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455533|ref|XP_004145507.1| PREDICTED: U-box domain-containing protein 7-like [Cucumis sativus]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 337/520 (64%), Positives = 393/520 (75%), Gaps = 19/520 (3%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK  +N V S++ +R    + A     HFRL   FS A+FRRKIFDAVSCGGSSRY   
Sbjct: 1   MAKCQRNEVGSVVFDRASISSPAGS---HFRLCAPFSTASFRRKIFDAVSCGGSSRYNYH 57

Query: 61  ILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNL-AEGE 119
              D  +        T + S     ++    +P++         KSEKL DLL L +  E
Sbjct: 58  --HDGNVGGGDGTVSTAIRSLSEIVKEREAARPKRSN------VKSEKLFDLLKLESSPE 109

Query: 120 AASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL 179
           +  E KKKEE LEE K VVK LQ E   +RR AAS VR LAKE++E R TL MLGAIPPL
Sbjct: 110 SKPETKKKEEVLEEFKRVVKKLQDEDLVERRAAASGVRLLAKEDTEARGTLGMLGAIPPL 169

Query: 180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI 239
            GMLD +  +S+I+SLYALLNLGIGNDLNKAAI KAG +HKMLKLIES  +PNP VSEAI
Sbjct: 170 VGMLDLEDDESKIASLYALLNLGIGNDLNKAAIAKAGTIHKMLKLIESETSPNPPVSEAI 229

Query: 240 VANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS 299
           VANFLGLSALD+NK +IGSSGA+PFLVK L +  ++ S Q KQDALRALYNLSIFPSNI 
Sbjct: 230 VANFLGLSALDTNKLLIGSSGAIPFLVKNLYDPHQESSSQVKQDALRALYNLSIFPSNIP 289

Query: 300 FILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS 359
           FILET L+ +LL  LGDME+SER LS+LSN++ST +GRKAIS  P++FPIL+DVLNW DS
Sbjct: 290 FILETKLVPFLLNALGDMEVSERALSVLSNVISTSDGRKAISTYPNSFPILIDVLNWADS 349

Query: 360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419
           PGCQEK SY+LMVMAHKSY DRQAMIEAG++SALLELTLLGSTLAQKRASR+LE LRVDK
Sbjct: 350 PGCQEKTSYILMVMAHKSYSDRQAMIEAGVSSALLELTLLGSTLAQKRASRVLESLRVDK 409

Query: 420 GKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQ 479
           GKQ+S   GGN       SAP+CGS +S  TNP   + E LE  +D++SEEKKAVKQLV+
Sbjct: 410 GKQISDHLGGN------SSAPMCGSLTSF-TNPILGSAEALEGSDDLVSEEKKAVKQLVR 462

Query: 480 QSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           QSLQNNM+RIVKRANLPQDFVPS++FKSLT+SSTSKSLPF
Sbjct: 463 QSLQNNMRRIVKRANLPQDFVPSDNFKSLTSSSTSKSLPF 502

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466041|ref|XP_003603305.1| U-box domain-containing protein [Medicago truncatula] gi|355492353|gb|AES73556.1| U-box domain-containing protein [Medicago truncatula]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 340/522 (65%), Positives = 391/522 (74%), Gaps = 30/522 (5%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK H++NV S++L       +   G+  FR    FS ++FRR IFDA+SCGG+SR+ R 
Sbjct: 1   MAKCHRSNVDSIVLHHRHHAKNTTAGN--FR----FSASSFRRIIFDALSCGGASRHHRH 54

Query: 61  ILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEA 120
              +E IS     A T  E RG           E Q+E      K+EKLLDLLN+   E 
Sbjct: 55  YHREEEISSVASTA-TVKELRG-----------EVQEE------KTEKLLDLLNIQVHET 96

Query: 121 ASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180
            +E KKKEE L E+K VVKDL+ E   +RR AA++VRSL KE+SE R +LAMLGAI PL 
Sbjct: 97  NAESKKKEETLTEMKHVVKDLRGEDSTKRRIAAARVRSLTKEDSEARGSLAMLGAISPLV 156

Query: 181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIV 240
           GMLD +   SQI SLYALLNLGI ND NKAAIVK GAVHKMLKLIESP   + SVSEAIV
Sbjct: 157 GMLDSEDLHSQIDSLYALLNLGIANDANKAAIVKIGAVHKMLKLIESPCVVDSSVSEAIV 216

Query: 241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSP--QAKQDALRALYNLSIFPSNI 298
           ANFLGLSALDSNKPIIGSSGA+PFLV+ LKN D       Q KQDALRALYNLSI  +NI
Sbjct: 217 ANFLGLSALDSNKPIIGSSGAIPFLVRILKNLDNSSKSSSQVKQDALRALYNLSINQTNI 276

Query: 299 SFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD 358
           SF+LETDL+ +L+  + DME+SER+LSILSNLVS+PEGRKAIS V DA  +LVDVLNWTD
Sbjct: 277 SFVLETDLVVFLINSIEDMEVSERVLSILSNLVSSPEGRKAISAVKDAITVLVDVLNWTD 336

Query: 359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418
           SP CQEKASY+LM+MAHK+Y DRQAMIEAGI S+LLELTL+G+ LAQKRASRIL+C R+D
Sbjct: 337 SPECQEKASYILMIMAHKAYADRQAMIEAGIVSSLLELTLVGTALAQKRASRILQCFRLD 396

Query: 419 KGKQVSGTY-GGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQL 477
           KGKQVS +  GGNL     VSAPIC SSSS     +G  KECL EE +MMS+EKKAVKQL
Sbjct: 397 KGKQVSRSCDGGNL--GLTVSAPICASSSSL-VKTDGGGKECLMEEVNMMSDEKKAVKQL 453

Query: 478 VQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           VQQSLQNNM +IVKRANL QDFVPSE F SLT+SSTSKSLPF
Sbjct: 454 VQQSLQNNMMKIVKRANLRQDFVPSERFASLTSSSTSKSLPF 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430354|ref|XP_002285290.1| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 357/526 (67%), Positives = 401/526 (76%), Gaps = 36/526 (6%)

Query: 1   MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
           MAK  +N+V SL+L R       A G   FRL+++ SGA FR+K+FD V CGGS R+ RE
Sbjct: 1   MAKCERNDVGSLVLNR-------AAGGGSFRLFSSSSGATFRKKVFDFVRCGGS-RHFRE 52

Query: 61  ILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLL-NLAEGE 119
             D+     P P A    + R     KG                 SEKL +LL N  EG 
Sbjct: 53  --DEVAGVQPLPLAPEPAQERSEPRRKG-----------------SEKLSELLKNSWEGW 93

Query: 120 A-----ASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLG 174
                 A E K+K EA EE+K VV+DLQ     ++   A +VR  AKE+ E R TLAMLG
Sbjct: 94  GEEDGNAEETKRKTEAFEEVKRVVRDLQVGEGVRKSGGAVEVRRRAKEDLEARTTLAMLG 153

Query: 175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA-PNP 233
           AIPPL GMLD +  +SQI+SLYALLNLGIGND NKAAIVKAGAVHKMLKLIESP   PN 
Sbjct: 154 AIPPLVGMLDSEDQESQIASLYALLNLGIGNDENKAAIVKAGAVHKMLKLIESPNELPNS 213

Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
           +VSEA+VANFLGLSALDSNK IIGSSGAVP LV+TLKN DK  S QA QD+LRALYNLSI
Sbjct: 214 AVSEAVVANFLGLSALDSNKSIIGSSGAVPILVRTLKNLDKTSSSQAMQDSLRALYNLSI 273

Query: 294 FPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDV 353
            P NIS ILETD + +LL  LGDME+SERILSILSN+VSTPEGRKAIS VPDAFPIL+DV
Sbjct: 274 LPLNISVILETDFVSFLLNTLGDMEVSERILSILSNVVSTPEGRKAISTVPDAFPILIDV 333

Query: 354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE 413
           LNW DS GCQEKASY+LMVMAHKSYGDRQAMI+AGI S+LLEL+LLGSTLAQKRASRILE
Sbjct: 334 LNWNDSTGCQEKASYILMVMAHKSYGDRQAMIDAGIVSSLLELSLLGSTLAQKRASRILE 393

Query: 414 CLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMMSEEKKA 473
           CLRVDKGKQVS +YGG+L  +  VSAPICGSSSS S +PN  +KE  EEEEDMMSEEKKA
Sbjct: 394 CLRVDKGKQVSESYGGSL-GSVGVSAPICGSSSS-SADPNLSSKEAFEEEEDMMSEEKKA 451

Query: 474 VKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           VKQLVQQSLQNNM+RIVKRANLPQDFVPS+HFK+LT+SSTSKSLPF
Sbjct: 452 VKQLVQQSLQNNMRRIVKRANLPQDFVPSDHFKALTSSSTSKSLPF 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507311|ref|XP_003522411.1| PREDICTED: U-box domain-containing protein 13-like [Glycine max]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 329/532 (61%), Positives = 384/532 (72%), Gaps = 63/532 (11%)

Query: 1   MAKIHQNNVRSLILE-RNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRY-- 57
           MAK HQNNV S+ L+ R+    + A GH  FR+         RR IFDAVSCGG+SRY  
Sbjct: 1   MAKCHQNNVGSIALDHRHSAKNATAAGH--FRV--------LRRLIFDAVSCGGTSRYRY 50

Query: 58  ---GREILDDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLN 114
              G ++ D  G    +    TE E R                        SEKL DLLN
Sbjct: 51  RQRGGDVSD--GGDFSSAACHTEKEER------------------------SEKLSDLLN 84

Query: 115 LAEGEAASEIKKKEEALEELKI--VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM 172
            AE + A+  ++K++     ++  VVK+L+ E   ++R AA++VRSLAKE+SE RV LAM
Sbjct: 85  AAENKMAAAEEEKKKEEALAELKQVVKELREEDFRKQRIAAARVRSLAKEDSEARVNLAM 144

Query: 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPN 232
           LGAIPPL GMLD + A SQI+SLYALLNLGIGND NKAAIVK GAVHKMLKLIES    +
Sbjct: 145 LGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESS-GLD 203

Query: 233 PSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSD-----KKVSPQAKQDALRA 287
            SVSEAIVANFLGLSALDSNKPIIGSSGA+PFLV+TL N +      +   Q KQDA+RA
Sbjct: 204 SSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLTNLNDSKSTSQSQSQVKQDAMRA 263

Query: 288 LYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAF 347
           LYNLSI  SN+S +LETDL+ +L+  +GDME+SER L+ILSNLVSTPEGRKAIS V DA 
Sbjct: 264 LYNLSICQSNVSVVLETDLVWFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVRDAI 323

Query: 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR 407
           PILVD L+WTDSP CQEKASYVLM+MAHK+YGDR+ MIEAGI S+LLELTL+G+TLAQKR
Sbjct: 324 PILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKR 383

Query: 408 ASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEEDMM 467
           ASRILECLR+DKGKQVSG+YGGN      VSAPICGSSSS+       +K CL EE+ +M
Sbjct: 384 ASRILECLRIDKGKQVSGSYGGNF--NLGVSAPICGSSSSS-------SKGCLVEEDGIM 434

Query: 468 SEEKKAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFKSLTTSSTSKSLPF 519
           SEEKKAVKQLVQQSLQ+NM +IVKRANL  DFV S HF SL    TSKSLPF
Sbjct: 435 SEEKKAVKQLVQQSLQSNMIKIVKRANLRHDFVTSTHFASL----TSKSLPF 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	519
TAIR|locus:2116792	518	AT4G31890 "AT4G31890" [Arabido	0.971	0.972	0.570	1.3e-137
TAIR|locus:2040214	468	AT2G25130 [Arabidopsis thalian	0.709	0.786	0.595	4.7e-116
TAIR|locus:2038598	438	AT2G27430 "AT2G27430" [Arabido	0.518	0.614	0.309	5.6e-34
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.445	0.278	0.322	1e-23
TAIR|locus:2099634	408	AT3G03440 "AT3G03440" [Arabido	0.481	0.612	0.324	1.4e-23
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.483	0.410	0.311	2.1e-23
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.473	0.372	0.344	2.6e-23
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.495	0.389	0.306	4.2e-22
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.695	0.475	0.260	1.3e-21
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.500	0.411	0.294	1.5e-21

TAIR|locus:2116792 AT4G31890 "AT4G31890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
 Identities = 304/533 (57%), Positives = 351/533 (65%)

Query:     1 MAKIHQNNVRSLILERNDGPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCGGSSRYGRE 60
             MAK H+NN+ SLIL+R    +S++   +HFRLW+ FS + FRRKI DAVSCGGSSRY  E
Sbjct:     1 MAKCHRNNIGSLILDRAPSTSSSSTSGYHFRLWSTFSRSTFRRKIVDAVSCGGSSRYRHE 60

Query:    61 IL--DDEGISLPTPKAKTEMESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLXXX 118
             +   DDEG S  T  AK+ + S   D++             +    KSEKL DLLNL   
Sbjct:    61 LREEDDEG-SYVTVTAKSTVAS-SKDAKANTIGAALNGVAFEETSKKSEKLCDLLNLAEV 118

Query:   119 XXXXXXXXXXXXXXXXXXVVKDLXXXXXXXXX-----------XXXXKVRSLAKENSETR 167
                               VV++L                        +VR LAKE+SE R
Sbjct:   119 EADVETMKKEEALEVLKRVVRELQSAAAAREDNDDGGDCRKKITAASEVRLLAKEDSEAR 178

Query:   168 VTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE 226
             VTLAMLGAIPPL  M+D  ++ D+QI+SLYALLNLGIGND NKAAIVKAGAVHKMLKLIE
Sbjct:   179 VTLAMLGAIPPLVSMIDDSRIVDAQIASLYALLNLGIGNDANKAAIVKAGAVHKMLKLIE 238

Query:   227 SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR 286
             SP  P+  ++EA+VANFLGLSALDSNKPIIGSSGA+ FLVKTL+N D+  S QA++DALR
Sbjct:   239 SPNTPDQEIAEAVVANFLGLSALDSNKPIIGSSGAIIFLVKTLQNLDETSSSQAREDALR 298

Query:   287 ALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDA 346
             ALYNLSI+  N+SFILETDLI YLL  LGDME+SERIL+ILSNLV+ PEGRKAI  V DA
Sbjct:   299 ALYNLSIYQPNVSFILETDLITYLLNTLGDMEVSERILAILSNLVAVPEGRKAIGLVCDA 358

Query:   347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXXXXXXXXXXXXXXQK 406
             FP+LVDVLNWTDSPGCQEKA+Y+LM+MAHK YGDRQ MIEAGI               QK
Sbjct:   359 FPVLVDVLNWTDSPGCQEKATYILMLMAHKGYGDRQVMIEAGIESALLELTLLGSALAQK 418

Query:   407 RASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPICGXXXXXXXNPNGVAXXXXXXXXXX 466
             RASRILECLRVDKGKQV  + G    +  A+SAPI G         NG+           
Sbjct:   419 RASRILECLRVDKGKQVLDSTG----SCGALSAPIYGT------RDNGL---DHEENDLM 465

Query:   467 XXXXXXAVKQLVQQSLQNNMKRIVKRANLPQDFVPSEHFXXXXXXXXXXXXPF 519
                   AVKQLVQQSLQ+NMKRIVKRANLPQDFVPSEHF            PF
Sbjct:   466 MSEERKAVKQLVQQSLQSNMKRIVKRANLPQDFVPSEHFKSLSLSSTSKSLPF 518

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2040214 AT2G25130 [Arabidopsis thaliana (taxid:3702)]

 Score = 1028 (366.9 bits), Expect = 4.7e-116, Sum P(2) = 4.7e-116
 Identities = 241/405 (59%), Positives = 271/405 (66%)

Query:    36 FSGAAFRRKIFDAVSCGGSSRYGREIL--DDEGISLPTPKAKTEMESRGVDSEKGNGRKP 93
             FSG++ RR IFDA+SCGGSSRY RE+   DDEG S  T          G DS     RKP
Sbjct:    30 FSGSSLRRIIFDAISCGGSSRYRRELREEDDEGCSKST--------IIGEDSM----RKP 77

Query:    94 EKQKEAKGCVSKSEKLLDLLNLXXXXXXXXXXXXXXXXXXXXXVVKDLXXXXXXXXXXXX 153
             EK             L DLLNL                     VVKDL            
Sbjct:    78 EK-------------LSDLLNLAVIESGVETKKKEETLEILKRVVKDLQAEAEAEAEAAE 124

Query:   154 XK------VRSLAKENSETRVTLAMLGAIPPLAGMLD--FQLADSQISSLYALLNLGIGN 205
              K      VR LAK++ E RVTLAMLGAIPPL  M+D   Q  D+ I+SLYALLNLGIGN
Sbjct:   125 KKIAAASEVRLLAKDDIEARVTLAMLGAIPPLVSMIDDESQSEDALIASLYALLNLGIGN 184

Query:   206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFL 265
             D+NKAAIVKAG VHKMLKL+ES   PN +++EAIVANFLGLSALDSNKPIIGSSGA+ FL
Sbjct:   185 DVNKAAIVKAGVVHKMLKLVESSKPPNQAIAEAIVANFLGLSALDSNKPIIGSSGAIIFL 244

Query:   266 VKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILS 325
             VKTLKN ++  S QA++DALRALYNLSI+  N+SFILETDLI +LL  LGDME+SERIL+
Sbjct:   245 VKTLKNFEETSSSQAREDALRALYNLSIYHQNVSFILETDLIPFLLNTLGDMEVSERILA 304

Query:   326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMI 385
             IL+N+VS PEGRKAI  V +AFPILVDVLNW DS  CQEKA Y+LM+MAHK YGDR AMI
Sbjct:   305 ILTNVVSVPEGRKAIGEVVEAFPILVDVLNWNDSIKCQEKAVYILMLMAHKGYGDRNAMI 364

Query:   386 EAGIXXXXXXXXXXXXXXXQKRASRILECLRV-DKGKQVSGT-YG 428
             EAGI               QKRASR+LECLRV DKGKQVS   YG
Sbjct:   365 EAGIESSLLELTLVGSPLAQKRASRVLECLRVVDKGKQVSAPIYG 409

GO:0005871 "kinesin complex" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2038598 AT2G27430 "AT2G27430" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 85/275 (30%), Positives = 142/275 (51%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214
             ++  LA+E+ +TR  +A LG I  L  M+   ++  Q +++ AL+ L  G   NKA +V 
Sbjct:   100 EIEKLAREDKKTRKLMAELGVIQILVSMVASDVSGHQKAAVNALIQLSHGTYTNKALMVN 159

Query:   215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK 274
             A    K+ K +E     + S   A     L LS+L + +  + SS  +PFL+ T+ NSD 
Sbjct:   160 ADICSKLPKNVE---VLDQSTRHAFAELLLSLSSLTNTQLPVASSQILPFLMDTM-NSDS 215

Query:   275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTP 334
                 + K+  L  + NL +   N   ++    +  LL ++   +LSE+ L+ L  LV T 
Sbjct:   216 -TDMKTKEICLATISNLCLVLENAGPLVLNGAVETLLSLMSTKDLSEKALASLGKLVVTQ 274

Query:   335 EGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXXXX 394
              G+KA+         L+++L W D P CQE A+Y+LMV+AH+S+  R+ M +AGI     
Sbjct:   275 MGKKAMEDCLLVSKGLIEILTWEDIPKCQEYAAYILMVLAHQSWSQREKMAKAGIVPVLL 334

Query:   395 XXXXXXXXXXQKRASRILECLRVDKGKQVSGTYGG 429
                       QKRA ++L+  + ++  ++ G + G
Sbjct:   335 EVSLLGSPLVQKRAVKLLQWFKDERNVRM-GPHSG 368

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.0e-23, P = 1.0e-23
 Identities = 78/242 (32%), Positives = 133/242 (54%)

Query:   137 VVKDLXXXXXXXXXXXXXKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLY 196
             +V++L             ++R LAK N + R+ +   GAI  L  +L    + +Q +++ 
Sbjct:   549 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVT 608

Query:   197 ALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPII 256
             ALLNL I ND NK AI  AGA+  ++ ++E+    +    E   A    LS ++ NK  I
Sbjct:   609 ALLNLSI-NDNNKKAIADAGAIEPLIHVLENG---SSEAKENSAATLFSLSVIEENKIKI 664

Query:   257 GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD 316
             G SGA+  LV  L N     +P+ K+DA  AL+NLSI   N + I+++  +RYL++++  
Sbjct:   665 GQSGAIGPLVDLLGNG----TPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDP 720

Query:   317 ME-LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAH 375
                + ++ +++L+NL + PEGR AI +     P+LV+V+    + G +E A+  L+ ++ 
Sbjct:   721 AAGMVDKAVAVLANLATIPEGRNAIGQ-EGGIPLLVEVVELGSARG-KENAAAALLQLST 778

Query:   376 KS 377
              S
Sbjct:   779 NS 780

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 87/268 (32%), Positives = 137/268 (51%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI-SSLYALLNLGIGNDLNKAAIV 213
             ++R L K +   R   +   A+ PL  ML F   +S   ++L ALLNL + ++ NK +I+
Sbjct:    87 EIRRLTKTSHRCRRHFSQ--AVEPLVSMLRFDSPESHHEAALLALLNLAVKDEKNKVSII 144

Query:   214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSD 273
             +AGA+  ++  ++S    +P++ E   A+ L LSA  +NKPIIG++G VP LVK +K+  
Sbjct:   145 EAGALEPIINFLQSN---SPTLQEYASASLLTLSASANNKPIIGANGVVPLLVKVIKHG- 200

Query:   274 KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME----LSERILSILSN 329
                SPQAK DA+ AL NLS  P N+S IL T  +  +L +L   +     SE+  S++  
Sbjct:   201 ---SPQAKADAVMALSNLSTLPDNLSMILATKPLSPILNLLKSSKKSSKTSEKCCSLIEA 257

Query:   330 L-VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD-RQAMIEA 387
             L VS  E R  +         +V+VL    S   +E A  VL+ +        R+ ++  
Sbjct:   258 LMVSGEEARTGLVSDEGGVLAVVEVLE-NGSLQAREHAVGVLLTLCQSDRSKYREPILRE 316

Query:   388 GIXXXXXXXXXXXXXXXQKRASRILECL 415
             G+               + +A R+L CL
Sbjct:   317 GVIPGLLELTVQGTSKSRIKAQRLL-CL 343

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 292 (107.8 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 82/263 (31%), Positives = 138/263 (52%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214
             ++R LAK N   R+ +A  GAIP L  +L      +Q  ++ ALLNL I ++ NKA+IV 
Sbjct:   346 EIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSI-HENNKASIVD 404

Query:   215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK 274
             + A+ K+++++++    +    E   A    LS +D NK  IG++GA+P L+  L +   
Sbjct:   405 SHAIPKIVEVLKTG---SMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDG-- 459

Query:   275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS 332
               SP+ K+DA  A++NL I+  N    ++  ++ +L+  L D    + +  LS+LS L  
Sbjct:   460 --SPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAG 517

Query:   333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXX 392
              PEG+  I+R  +  P LV+V+  T SP  +E A+ +L ++         A   AG+   
Sbjct:   518 NPEGKIVIAR-SEPIPPLVEVIK-TGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDA 575

Query:   393 XXXXXXXXXXXXQKRASRILECL 415
                         +++AS ILE +
Sbjct:   576 LKELSETGTDRAKRKASSILELM 598

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 91/264 (34%), Positives = 138/264 (52%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214
             ++R LAK N++ RV +A  GAIP L G+L    +  Q  S+ ALLNL I  + NK AIV 
Sbjct:   375 EIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICEN-NKGAIVS 433

Query:   215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK 274
             AGA+  ++++++     +    E   A    LS +D NK  IG+ GA+P LV  L    +
Sbjct:   434 AGAIPGIVQVLKKG---SMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQ 490

Query:   275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVS 332
             +     K+DA  AL+NL I+  N    +   +I  L  +L +    + +  L+IL+ L S
Sbjct:   491 R----GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSS 546

Query:   333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GI 389
              PEG KAI    DA P LV+ +  T SP  +E A+ VL+   H   GD Q ++EA   G+
Sbjct:   547 HPEG-KAIIGSSDAVPSLVEFIR-TGSPRNRENAAAVLV---HLCSGDPQHLVEAQKLGL 601

Query:   390 XXXXXXXXXXXXXXXQKRASRILE 413
                            +++A+++LE
Sbjct:   602 MGPLIDLAGNGTDRGKRKAAQLLE 625

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 4.2e-22, P = 4.2e-22
 Identities = 83/271 (30%), Positives = 141/271 (52%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214
             ++R LA+EN E RV +A  GAIP L  +L +  +  Q +++  LLNL I +++NK  I  
Sbjct:   402 QMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISN 460

Query:   215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK 274
              GA+  +++++E+    N    E   A    LS LD NK  IG S  +P LV  L++   
Sbjct:   461 EGAIPNIIEILENG---NREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTL 517

Query:   275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELS--ERILSILSNLVS 332
             +     K+DAL AL+NLS+  +N    ++  +++ LL +L D  L   +  LSIL  L S
Sbjct:   518 R----GKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLAS 573

Query:   333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXX 392
              PEGR+AI ++      LV+ +    +P  +E A+ VL+ +   +     A ++ G+   
Sbjct:   574 HPEGRQAIGQL-SFIETLVEFIR-QGTPKNKECATSVLLELGSNNSSFILAALQFGVYEY 631

Query:   393 XXXXXXXXXXXXQKRASRILECLRVDKGKQV 423
                         Q++A+ +++   + K +Q+
Sbjct:   632 LVEITTSGTNRAQRKANALIQL--ISKSEQI 660

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 98/376 (26%), Positives = 171/376 (45%)

Query:    44 KIFDAVSCGGSSRYGR-EILDDEGISLP-TPKAKTEMESRGVDSEKGNGRKPEKQKEAKG 101
             +IF+ +S G S  + R E +     S+   P    E ES   + +  +   P+K  E+  
Sbjct:   385 EIFELLSPGQSYTHSRSESVCSVVSSVDYVPSVTHETESILGNHQSSSEMSPKKNLESSN 444

Query:   102 CVSKSEKLLDLLNLXXXXXXXXXXXXXXXXXXXXXVVKDLXXXXXXXXXXXXXKVRSLAK 161
              V+                                +V+DL             ++R L  
Sbjct:   445 NVNHEHSAAKTYECSVHDLDDSGTMTTSHTIK---LVEDLKSGSNKVKTAAAAEIRHLTI 501

Query:   162 ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221
              + E RV +   GAI PL  +L  +   +Q  ++ ALLNL I ++LNKA IV+ GA+  +
Sbjct:   502 NSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLSI-SELNKAMIVEVGAIEPL 560

Query:   222 LKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAK 281
             + ++ +    N    E   A+   LS L  N+  IG S A    ++ L N   K + + K
Sbjct:   561 VHVLNTG---NDRAKENSAASLFSLSVLQVNRERIGQSNAA---IQALVNLLGKGTFRGK 614

Query:   282 QDALRALYNLSIFPSNISFILETDLIRYLLEMLG-DMELSERILSILSNLVSTPEGRKAI 340
             +DA  AL+NLSI   N + I++   ++YL+E+L  D+E+ ++ +++L+NL +  EGR+AI
Sbjct:   615 KDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAVALLANLSAVGEGRQAI 674

Query:   341 SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXXXXXXXXXX 400
              R     P+LV+ ++     G +E A+ VL+ +   S      +++ G            
Sbjct:   675 VR-EGGIPLLVETVDLGSQRG-KENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSG 732

Query:   401 XXXXQKRASRILECLR 416
                 +++A ++L   R
Sbjct:   733 TQRAKEKAQQLLSHFR 748

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 80/272 (29%), Positives = 141/272 (51%)

Query:   155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK 214
             ++R LAK N + RV +A  GAIP L  +L      +Q  S+ ALLNL I N+ NK AIV 
Sbjct:   368 ELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI-NEGNKGAIVD 426

Query:   215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK 274
             AGA+  +++++++    +    E   A    LS +D NK  IG++GA+  L+  L+   +
Sbjct:   427 AGAITDIVEVLKNG---SMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTR 483

Query:   275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS 332
             +     K+DA  A++NL I+  N S  ++  ++  L  +L D    + +  L+IL+ L +
Sbjct:   484 R----GKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILST 539

Query:   333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIXXX 392
               EG+ AI+   ++ P+LV+++  T SP  +E A+ +L  +   +        E G    
Sbjct:   540 NQEGKTAIAEA-ESIPVLVEIIR-TGSPRNRENAAAILWYLCIGNIERLNVAREVGADVA 597

Query:   393 XXXXXXXXXXXXQKRASRILECLRVDKGKQVS 424
                         +++A+ +LE ++  +G  V+
Sbjct:   598 LKELTENGTDRAKRKAASLLELIQQTEGVAVT 629

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0817 SubName- Full=Putative uncharacterized protein; (493 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	519
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-08
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 10/121 (8%)

Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
           G +P L  +L     + Q  + +AL NL  GN+ N  A+V+AG +  +++L++S    + 
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDE 63

Query: 234 SVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291
            V +A +   L   A     NK I+  +G VP LV  L +S++ +    +++A  AL NL
Sbjct: 64  EVVKAALW-ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI----QKNATGALSNL 118

Query: 292 S 292
           +
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 29/95 (30%), Positives = 52/95 (54%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           L  +V  L S  E  +REAA  + +L+  N++    +   G +P L  +L  +  +   +
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP 228
           +L+AL NL  G + NK  +++AG V K++ L++S 
Sbjct: 69  ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)

Query: 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEML--G 315
           +G +P LV  L +SD+ V    +++A  AL NLS     NI  ++E   +  L+++L   
Sbjct: 6   AGGLPALVSLLSSSDENV----QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 316 DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN 355
           D E+ +  L  L NL + PE  K I       P LV++L+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD 101

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 250 DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292
             NK  +  +GAVP LV+ L + D++V    +++A  AL NL+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEV----QEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	519
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.96
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.96
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.86
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.76
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.67
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.51
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.43
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.34
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.31
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.29
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.26
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.22
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.2
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.19
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.14
PRK09687	280	putative lyase; Provisional	99.09
PRK09687	280	putative lyase; Provisional	99.04
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.01
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.94
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.86
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.77
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.7
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.69
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.68
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.66
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.6
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.57
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.57
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.52
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.48
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.43
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.42
PTZ00429	746	beta-adaptin; Provisional	98.41
COG5369	743	Uncharacterized conserved protein [Function unknow	98.41
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.36
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.22
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.19
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.03
PF05536	543	Neurochondrin: Neurochondrin	98.02
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.01
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.01
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.0
PTZ00429	746	beta-adaptin; Provisional	97.97
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.95
PF05536	543	Neurochondrin: Neurochondrin	97.93
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.93
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.9
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.89
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.8
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.8
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.8
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.65
TIGR02270	410	conserved hypothetical protein. Members are found	97.62
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.6
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.58
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.57
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.51
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.49
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.44
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.42
TIGR02270	410	conserved hypothetical protein. Members are found	97.41
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.36
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.35
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.33
COG5369	743	Uncharacterized conserved protein [Function unknow	97.31
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.24
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.23
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.18
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.17
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.15
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.12
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.01
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.01
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.97
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.96
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.88
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.85
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.8
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.76
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.7
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.64
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.59
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.57
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.47
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.45
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.44
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.36
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.24
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.02
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.0
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.97
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.97
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.95
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.88
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.77
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.75
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.72
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.47
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.46
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.45
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.45
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.42
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.37
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.37
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.3
KOG3036	293	consensus Protein involved in cell differentiation	95.3
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.15
PF05004	309	IFRD: Interferon-related developmental regulator (	95.09
KOG3036	293	consensus Protein involved in cell differentiation	95.08
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.06
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.04
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	95.02
KOG0567	289	consensus HEAT repeat-containing protein [General	94.93
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	94.9
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.83
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	94.81
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.8
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.76
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.69
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.47
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.47
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	94.46
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.29
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.1
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.04
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.66
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.58
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.3
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.11
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.93
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	92.8
PF05004	309	IFRD: Interferon-related developmental regulator (	92.66
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.66
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.59
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	92.3
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.06
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.88
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	91.8
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	91.67
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.53
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.43
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	91.39
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	91.26
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.21
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	91.15
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.03
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.02
PRK14707	2710	hypothetical protein; Provisional	90.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	90.6
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.48
COG5096	757	Vesicle coat complex, various subunits [Intracellu	90.23
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.16
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	89.89
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	89.79
KOG4653	982	consensus Uncharacterized conserved protein [Funct	89.77
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	89.09
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	88.97
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	88.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.66
PRK14707	2710	hypothetical protein; Provisional	88.52
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	88.15
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.98
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	87.85
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	87.75
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.56
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	86.27
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	86.24
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.07
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	85.37
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	85.31
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.03
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	84.93
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	84.74
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	84.66
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	84.66
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	84.37
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	83.62
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	83.47
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.9
KOG2032	533	consensus Uncharacterized conserved protein [Funct	82.51
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	82.12
KOG2025	892	consensus Chromosome condensation complex Condensi	81.91
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	81.78
KOG2062	929	consensus 26S proteasome regulatory complex, subun	81.43
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	81.42
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	81.3
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	81.12

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-30  Score=266.93  Aligned_cols=291  Identities=19%  Similarity=0.271  Sum_probs=257.9

Q ss_pred             CChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHH
Q 010064          117 EGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSL  195 (519)
Q Consensus       117 ~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~  195 (519)
                      .+..-...+ ..|.   ++.+|+.|.. .++..|.+|+|+|.+++.++.+....+++.|++|.++.+|.++++.+++.|.
T Consensus        98 ~~ppi~~vi-~~G~---v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQav  173 (514)
T KOG0166|consen   98 RNPPIDEVI-QSGV---VPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAV  173 (514)
T ss_pred             CCCCHHHHH-HcCc---HHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHH
Confidence            333444444 4477   9999999974 4688999999999999999988888899999999999999999999999999


Q ss_pred             HHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCC
Q 010064          196 YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDK  274 (519)
Q Consensus       196 ~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~  274 (519)
                      |||+|++.+++..|..++++|++++|+.++..+.  .......++|+|.||.......+.+.. ..++|.|..++..   
T Consensus       174 WALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~--~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~---  248 (514)
T KOG0166|consen  174 WALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD--KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHS---  248 (514)
T ss_pred             HHHhccccCChHHHHHHHhhcchHHHHHHhcccc--chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhc---
Confidence            9999999999999999999999999999998872  236788999999999987755455444 7789999999998   


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhh
Q 010064          275 KVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPIL  350 (519)
Q Consensus       275 ~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~L  350 (519)
                       .+..+..+|+|||.+|+.+++ ..+.+++.|+++.|+.+|..++  ++..|+++++|++. ++...+.+++ .|+++.|
T Consensus       249 -~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l  326 (514)
T KOG0166|consen  249 -TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVL  326 (514)
T ss_pred             -CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHH
Confidence             799999999999999998765 8899999999999999997554  88999999999998 5556667777 7999999


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      ..++..+....++++|||++.|++.++.++.++++++|++|.|+.++..+.-+.|+.|+|++.++.-.
T Consensus       327 ~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  327 SNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            99998666677999999999999999999999999999999999999999999999999999999943

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4e-29  Score=245.36  Aligned_cols=310  Identities=22%  Similarity=0.211  Sum_probs=282.8

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +.+++-+-.++-|++.+-+++..+++.++   +..|+..+..++.+.|+.|+.+|.+|+.-+ ++|..++..|++.||..
T Consensus        99 ~~Iq~aa~~alGnlAVn~enk~liv~l~G---l~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltr  174 (550)
T KOG4224|consen   99 KCIQCAAGEALGNLAVNMENKGLIVSLLG---LDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTR  174 (550)
T ss_pred             hhhhhhhhhhhccceeccCCceEEEeccC---hHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHh
Confidence            44566666688889988888888877777   888888888888999999999999999775 89999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCC-
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSG-  260 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~g-  260 (519)
                      +-++.+..+|..++.+|.|+.. +.+||+.++.+|++|.|+.+++++   +.+++..++-++.+++.+..+|..+++.+ 
T Consensus       175 LakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~---d~dvqyycttaisnIaVd~~~Rk~Laqaep  250 (550)
T KOG4224|consen  175 LAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG---DLDVQYYCTTAISNIAVDRRARKILAQAEP  250 (550)
T ss_pred             hcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC---ChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence            8889999999999999999999 599999999999999999999999   99999999999999999999999999877 


Q ss_pred             -ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccH
Q 010064          261 -AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGR  337 (519)
Q Consensus       261 -ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r  337 (519)
                       .||.||+++..    ++++++-.|.-+|.||+..++++..++++|.+|.++.+|.++  +.....+.++.|++..+-+-
T Consensus       251 ~lv~~Lv~Lmd~----~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe  326 (550)
T KOG4224|consen  251 KLVPALVDLMDD----GSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE  326 (550)
T ss_pred             chHHHHHHHHhC----CChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence             99999999998    799999999999999999999999999999999999999765  36678888999999998888


Q ss_pred             HHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          338 KAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       338 ~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..|++ .|++.+|+.+|...++.++|-+|+.+|+||+..++.++..+.+.|+||.|++|+.++...+|.+...+++.|..
T Consensus       327 ~lI~d-agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  327 VLIAD-AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             cceec-ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            88888 79999999999977788899999999999999888899999999999999999999999999999999999995


Q ss_pred             cCCCccc
Q 010064          418 DKGKQVS  424 (519)
Q Consensus       418 ~~~~~~~  424 (519)
                      ....+..
T Consensus       406 ~d~~k~~  412 (550)
T KOG4224|consen  406 NDNDKEA  412 (550)
T ss_pred             ccccHHH
Confidence            4444443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=280.90  Aligned_cols=303  Identities=19%  Similarity=0.209  Sum_probs=265.5

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      ...+++++.+|.+++.+ ++..+.+.+.|+   ++.|+++|.+++...|..|++.|++|+..+.+++..+++.|+||+|+
T Consensus       418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~gg---Ip~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV  494 (2102)
T PLN03200        418 ADVQEELIRALSSLCCGKGGLWEALGGREG---VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLV  494 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHcCc---HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            45788888999999855 677888888888   99999999999999999999999999988888999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-------
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-------  253 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k-------  253 (519)
                      .+|++++..+++.|+|+|.||+.+++.++..+.++|++|+|+++|+++   +...++.++++|.+|....+..       
T Consensus       495 ~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~  571 (2102)
T PLN03200        495 QLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAATISQLTA  571 (2102)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            999999999999999999999996455566666889999999999998   8999999999999996332211       


Q ss_pred             ------------------------------hh-hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHH
Q 010064          254 ------------------------------PI-IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFI  301 (519)
Q Consensus       254 ------------------------------~~-I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l  301 (519)
                                                    .. ....|+++.|++++.+    ++..++..|+|+|.|++.+.. ++..+
T Consensus       572 LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s----gs~~ikk~Aa~iLsnL~a~~~d~~~av  647 (2102)
T PLN03200        572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS----SKEETQEKAASVLADIFSSRQDLCESL  647 (2102)
T ss_pred             HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                                          00 1136899999999998    799999999999999998664 78889


Q ss_pred             HhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          302 LETDLIRYLLEMLG--DMELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       302 ~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      +..|+|++|+.+|.  +.+++..++++|.||+.  ..+++..++. .|++++|+++|. +.+..+.+.|+.+|.||+.++
T Consensus       648 v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~-~~d~~v~e~Al~ALanLl~~~  725 (2102)
T PLN03200        648 ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAA-EDAIKPLIKLAK-SSSIEVAEQAVCALANLLSDP  725 (2102)
T ss_pred             HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCCHHHHHHHHh-CCChHHHHHHHHHHHHHHcCc
Confidence            99999999999995  45699999999999996  4455667777 799999999999 678999999999999999984


Q ss_pred             hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                       +.+..+...|+|+.|++++.+|+++.|+.|.++|..|..
T Consensus       726 -e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        726 -EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK  764 (2102)
T ss_pred             -hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence             567788889999999999999999999999999998883

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=9e-28  Score=282.44  Aligned_cols=363  Identities=18%  Similarity=0.192  Sum_probs=288.7

Q ss_pred             HHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 010064          110 LDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLAD  189 (519)
Q Consensus       110 ~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~  189 (519)
                      .+|..+..+......+.+.++   ++.||.+|...+.+.|..+++.|..|+.++.+.+..+.+.|++|.|+++|.+++..
T Consensus       385 eALasl~gN~~l~~~L~~~da---ik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~  461 (2102)
T PLN03200        385 EALASLYGNAYLSRKLNHAEA---KKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ  461 (2102)
T ss_pred             HHHHHhcCChHHHHHHHhccc---hhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence            334344444444445545555   89999999999999999999999999988889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh-hhhCCChHHHHHH
Q 010064          190 SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI-IGSSGAVPFLVKT  268 (519)
Q Consensus       190 ~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~-I~~~gai~~LV~l  268 (519)
                      .|+.++++|.||+.++++++..|+++|+||.|+++|.++   +..+++.|+|+|.|++.++++... +.+.|+||+|+++
T Consensus       462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~---~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L  538 (2102)
T PLN03200        462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG---SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL  538 (2102)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH
Confidence            999999999999998899999999999999999999998   899999999999999998766444 5578999999999


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhcCCCccH-----------------H--------------------H-HHhcCcHHHH
Q 010064          269 LKNSDKKVSPQAKQDALRALYNLSIFPSNI-----------------S--------------------F-ILETDLIRYL  310 (519)
Q Consensus       269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~n~-----------------~--------------------~-l~~~g~v~~L  310 (519)
                      |.+    ++..++..|+++|.||+.+.++.                 .                    . ....|+++.|
T Consensus       539 L~s----gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~L  614 (2102)
T PLN03200        539 LKN----GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTL  614 (2102)
T ss_pred             HhC----CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHH
Confidence            998    68999999999999996433211                 0                    0 1135899999


Q ss_pred             HHHcC--CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHH
Q 010064          311 LEMLG--DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIE  386 (519)
Q Consensus       311 v~lL~--~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~  386 (519)
                      +.+|.  ++.+++.|+++|.|++. .++.+..++. .|++++|+.+|. +++..+++.|+|+|.||+.+.. +++..+++
T Consensus       615 v~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~~~~q~~~~v~  692 (2102)
T PLN03200        615 IQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKLLT-NNTEAVATQSARALAALSRSIKENRKVSYAA  692 (2102)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99995  44699999999999998 6667788888 799999999999 6789999999999999997533 45677899


Q ss_pred             cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc-ccCCCcccccccccCccccCCCCCCCCCCCcchhhhhHhhh
Q 010064          387 AGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVS-GTYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLEEEED  465 (519)
Q Consensus       387 ~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (519)
                      .|+||+|++++...+..++..|..+|.++..++..... ..+|| +       .|+-...              ++..++
T Consensus       693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~-I-------~~Lv~lL--------------r~G~~~  750 (2102)
T PLN03200        693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDI-I-------LPLTRVL--------------REGTLE  750 (2102)
T ss_pred             cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCc-H-------HHHHHHH--------------HhCChH
Confidence            99999999999999999999999999999977654443 22222 1       1111111              112334


Q ss_pred             hhHHHHHHHHHHHHH-HHHH-HHHHHHHHhcCC--CCCCcccccc
Q 010064          466 MMSEEKKAVKQLVQQ-SLQN-NMKRIVKRANLP--QDFVPSEHFK  506 (519)
Q Consensus       466 ~~~~~~~~~~~~v~~-s~~~-~~~~i~~ra~~~--~~~~~~~~~~  506 (519)
                      .++.+..++.++.++ +.+. ....++++-.+.  .|+..+.+++
T Consensus       751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~  795 (2102)
T PLN03200        751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD  795 (2102)
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence            466777888888654 4555 557777776655  3444344433

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.7e-29  Score=246.03  Aligned_cols=286  Identities=19%  Similarity=0.221  Sum_probs=249.2

Q ss_pred             HHHHhcchhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 010064          123 EIKKKEEALEELKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNL  201 (519)
Q Consensus       123 ~~i~~~g~~~~l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NL  201 (519)
                      +.+..+|.   ++++|+++ .....-.+.+|+|+|.|++.+...-...++++|++|.+++||.+.+.++++.+.|||+|+
T Consensus       108 q~VIdaGv---VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNi  184 (526)
T COG5064         108 QPVIDAGV---VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNI  184 (526)
T ss_pred             hhHHhccc---cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccc
Confidence            33447888   99999999 455667899999999999988766666678999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh-hCCChHHHHHHhhcCCCCCCHHH
Q 010064          202 GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       202 a~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      +-+++..|..++++|++.+|+.++.+... +......+.|+|.||..-..-.+.-. -+.++|.|.+++.+    .++++
T Consensus       185 AGDS~~~RD~vL~~galeplL~ll~ss~~-~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys----~D~ev  259 (526)
T COG5064         185 AGDSEGCRDYVLQCGALEPLLGLLLSSAI-HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS----RDPEV  259 (526)
T ss_pred             cCCchhHHHHHHhcCchHHHHHHHHhccc-hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh----cCHHH
Confidence            99999999999999999999999987633 56888999999999985432222211 14579999999988    69999


Q ss_pred             HHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccC
Q 010064          281 KQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNW  356 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~  356 (519)
                      ..+|+||+.+|+..+. ..+.+++.|..+.|+.+|.+++  ++..|++.++|++. ++...+.+++ .|+++.|..+|. 
T Consensus       260 lvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~-~G~L~a~~~lLs-  337 (526)
T COG5064         260 LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIIN-CGALKAFRSLLS-  337 (526)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhee-cccHHHHHHHhc-
Confidence            9999999999999886 7888999999999999997665  89999999999998 4445556667 799999999998 


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          357 TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       357 s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      +....++++|||++.|+++++.++.+++++++.+|+|+.++.....+.|+.|+|++.++...
T Consensus       338 ~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg  399 (526)
T COG5064         338 SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG  399 (526)
T ss_pred             ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            56678999999999999999999999999999999999999999999999999999999854

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.2e-29  Score=243.55  Aligned_cols=302  Identities=21%  Similarity=0.267  Sum_probs=276.9

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ...|+.++..+.|++.-+++|..+...|+   +.++.++-++.+..+|.+|...|.+++.. .++|+.++..|++|.||+
T Consensus       140 vevqcnaVgCitnLaT~d~nk~kiA~sGa---L~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVs  215 (550)
T KOG4224|consen  140 VEVQCNAVGCITNLATFDSNKVKIARSGA---LEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVS  215 (550)
T ss_pred             cEEEeeehhhhhhhhccccchhhhhhccc---hhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhh
Confidence            45567788889999888999999988888   88888877888999999999999999954 599999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS  259 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~  259 (519)
                      ++++++.++|..++.++.|++++ ..+|+.++++|  .||.|+.++.++   ++.++..|.-+|.+|+.+.++...|.+.
T Consensus       216 ll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~---s~kvkcqA~lALrnlasdt~Yq~eiv~a  291 (550)
T KOG4224|consen  216 LLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDG---SDKVKCQAGLALRNLASDTEYQREIVEA  291 (550)
T ss_pred             hhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCC---ChHHHHHHHHHHhhhcccchhhhHHHhc
Confidence            99999999999999999999994 99999999998  999999999999   8999999999999999999999999999


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--C-HHHHHHHHHHHHHhcC-Ccc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--D-MELSERILSILSNLVS-TPE  335 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~-~~v~~~Al~~L~nLs~-~~e  335 (519)
                      |.+|.+|++|++    .........+.+++||+.++-|...++++|++.||+.+|.  | .+++..|..+|+||+. +..
T Consensus       292 g~lP~lv~Llqs----~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~  367 (550)
T KOG4224|consen  292 GSLPLLVELLQS----PMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH  367 (550)
T ss_pred             CCchHHHHHHhC----cchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence            999999999988    5777788889999999999999999999999999999993  3 4599999999999999 677


Q ss_pred             cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      ++..|.. .|+|+.+.+++. .+.-.+|+....++..|+.. +..+..+.+.|++|.|+.++.+.+.+++..|+.+|.+|
T Consensus       368 n~~~i~e-sgAi~kl~eL~l-D~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl  444 (550)
T KOG4224|consen  368 NVSVIRE-SGAIPKLIELLL-DGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL  444 (550)
T ss_pred             hhHHHhh-cCchHHHHHHHh-cCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence            8888888 899999999998 56788999998899888876 56799999999999999999999999999999999999


Q ss_pred             hhc
Q 010064          416 RVD  418 (519)
Q Consensus       416 ~~~  418 (519)
                      ..+
T Consensus       445 ss~  447 (550)
T KOG4224|consen  445 SSD  447 (550)
T ss_pred             hhh
Confidence            954

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.1e-28  Score=251.36  Aligned_cols=305  Identities=20%  Similarity=0.245  Sum_probs=266.7

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+.++.++|.|++.+ .+....+.++|.   ++.++++|.+++.+++..|+|+|.+++.+.+.+|..+...|++++|+
T Consensus       124 ~~lq~eAAWaLTnIAsgtse~T~~vv~aga---vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl  200 (514)
T KOG0166|consen  124 PTLQFEAAWALTNIASGTSEQTKVVVDAGA---VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL  200 (514)
T ss_pred             hhHHHHHHHHHHHHhcCchhhccccccCCc---hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence            45577889999999765 455556668888   99999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCH-HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh
Q 010064          181 GMLDFQLA-DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS  258 (519)
Q Consensus       181 ~lL~s~~~-~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~  258 (519)
                      .++..++. .....++|+|.|||.+..+.-..-.-..++|.|..++.+.   |+++...|+|+|.+|+..+. .-..+++
T Consensus       201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~---D~~Vl~Da~WAlsyLsdg~ne~iq~vi~  277 (514)
T KOG0166|consen  201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST---DEEVLTDACWALSYLTDGSNEKIQMVID  277 (514)
T ss_pred             HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            99988665 7889999999999997544433333456899999999999   99999999999999996654 4556678


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-CH--HHHHHHHHHHHHhcC-C
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-DM--ELSERILSILSNLVS-T  333 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-~~--~v~~~Al~~L~nLs~-~  333 (519)
                      .|++|.||.+|..    .+..++..|++++.|++.+++ ..+.++..|+++.|..++. ++  .++++|+|+++|++. +
T Consensus       278 ~gvv~~LV~lL~~----~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~  353 (514)
T KOG0166|consen  278 AGVVPRLVDLLGH----SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN  353 (514)
T ss_pred             ccchHHHHHHHcC----CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence            9999999999998    688899999999999999988 5677889999999999996 33  288999999999999 7


Q ss_pred             cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      .+..+++++ .|.+|.|+.+|+ +.+.++|.+|+|+++|++.+ +++....+++.|+|++|..++...+.+....+..+|
T Consensus       354 ~~qiqaVid-a~l~p~Li~~l~-~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l  431 (514)
T KOG0166|consen  354 QEQIQAVID-ANLIPVLINLLQ-TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGL  431 (514)
T ss_pred             HHHHHHHHH-cccHHHHHHHHh-ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHH
Confidence            778899999 799999999999 67799999999999999986 445677889999999999999989999999999999


Q ss_pred             HHhhhc
Q 010064          413 ECLRVD  418 (519)
Q Consensus       413 ~~l~~~  418 (519)
                      .++-.-
T Consensus       432 ~nil~~  437 (514)
T KOG0166|consen  432 ENILKV  437 (514)
T ss_pred             HHHHHH
Confidence            998843

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=2.1e-25  Score=217.56  Aligned_cols=301  Identities=19%  Similarity=0.201  Sum_probs=257.6

Q ss_pred             hhhHHHHHHHHHcccCChhhHHH-HHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEI-KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~-i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      .-.+.++.++|.|++.+..+... ++++|+   ++.++++|.+++.+++..|+|+|.|++.+++.+|+.+..+|+++||+
T Consensus       129 ~mlqfEAaWalTNiaSGtt~QTkvVvd~~A---VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL  205 (526)
T COG5064         129 DMLQFEAAWALTNIASGTTQQTKVVVDAGA---VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLL  205 (526)
T ss_pred             hHHHHHHHHHHhhhccCcccceEEEEeCCc---hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHH
Confidence            44566888999999877655443 347788   99999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCC--HHHHHHHHHHHHHhcCCChh--hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhh
Q 010064          181 GMLDFQL--ADSQISSLYALLNLGIGNDL--NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPI  255 (519)
Q Consensus       181 ~lL~s~~--~~~~~~a~~aL~NLa~~~~~--nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~  255 (519)
                      .+|.+.-  ..+...+.|+|.|||.+-.+  +...|  .-++|.|.+++.+.   ++++.-.|+|++..|+.-+. .-..
T Consensus       206 ~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~---D~evlvDA~WAiSYlsDg~~E~i~a  280 (526)
T COG5064         206 GLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR---DPEVLVDACWAISYLSDGPNEKIQA  280 (526)
T ss_pred             HHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc---CHHHHHHHHHHHHHhccCcHHHHHH
Confidence            9998744  57889999999999986322  23333  23689999999998   89999999999999997653 3556


Q ss_pred             hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC
Q 010064          256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS  332 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~  332 (519)
                      +.+.|..+.||.+|..    .+..++..|++.+.|+..+++ ..+.++..|+++.+..+|.++.  ++.+|||++.|++.
T Consensus       281 vld~g~~~RLvElLs~----~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA  356 (526)
T COG5064         281 VLDVGIPGRLVELLSH----ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA  356 (526)
T ss_pred             HHhcCCcHHHHHHhcC----ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence            6789999999999998    688899999999999999887 5677889999999999998765  99999999999998


Q ss_pred             -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS---YGDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~---~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                       +.+..+++++ ...+|.|+.+|. +-+-.++++|||++.|.+.+.   ++..+.+++.|+|.+|..++...+-++-+-+
T Consensus       357 Gnteqiqavid-~nliPpLi~lls-~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~  434 (526)
T COG5064         357 GNTEQIQAVID-ANLIPPLIHLLS-SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA  434 (526)
T ss_pred             CCHHHHHHHHh-cccchHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence             7788899999 799999999999 567789999999999998763   3567788899999999999998777777777


Q ss_pred             HHHHHHhh
Q 010064          409 SRILECLR  416 (519)
Q Consensus       409 ~~~L~~l~  416 (519)
                      ..++.++-
T Consensus       435 LD~~eniL  442 (526)
T COG5064         435 LDAIENIL  442 (526)
T ss_pred             HHHHHHHH
Confidence            77777766

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=2e-23  Score=228.93  Aligned_cols=381  Identities=18%  Similarity=0.185  Sum_probs=301.5

Q ss_pred             cccccchhccCCC-----------CCCCCccccccchhhhhhhhhHHhhhhhhheecc---------CCccccccccccc
Q 010064            6 QNNVRSLILERND-----------GPTSAADGHHHFRLWTAFSGAAFRRKIFDAVSCG---------GSSRYGREILDDE   65 (519)
Q Consensus         6 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~r~~~~~~~~~   65 (519)
                      ..|.+.|+.+++.           +.||...+.+..++|-.||+++-=+.++-.+.+|         +..||.....|-.
T Consensus       153 ~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~  232 (708)
T PF05804_consen  153 PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELR  232 (708)
T ss_pred             cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577777777654           7888888878899999999999888888877765         2336555544333


Q ss_pred             CCCC---CCcchhhhhcccCCCCCCCCCCCccchh-hhhc-hhhHHH----HHHHHHcccCChhhHHHHHhcchhHHHHH
Q 010064           66 GISL---PTPKAKTEMESRGVDSEKGNGRKPEKQK-EAKG-CVSKSE----KLLDLLNLAEGEAASEIKKKEEALEELKI  136 (519)
Q Consensus        66 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~----~l~aLl~ls~~e~~~~~i~~~g~~~~l~~  136 (519)
                      ..++   ..|....               .+.+.. ..+. .+.|.+    ++..|+|++++..++..+++.+.   ++.
T Consensus       233 ~~~~~~~~~~~~~~---------------~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~i---V~~  294 (708)
T PF05804_consen  233 KKKKAAEEKPEAKK---------------DYEKELKKLQTLIRKQEQLLRVAFYLLLNLAEDPRVELKMVNKGI---VSL  294 (708)
T ss_pred             hhhhhhccchhhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCC---HHH
Confidence            2222   1111100               000000 0000 111222    22468999999999999999898   999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG  216 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG  216 (519)
                      |++.|.+++.+..+.++.+|.+|+... +++..+.+.|+|++|++++++++.+++..++++|+||+.+ +.+|..|++.|
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~G  372 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLG  372 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCC
Confidence            999999999999999999999999765 8999999999999999999999999999999999999994 99999999999


Q ss_pred             cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064          217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~  296 (519)
                      ++|.|+.+|.++     ..+..+..+|.+||.++++|..+...+++|.|++++...   .+..+...+++++.||+.++.
T Consensus       373 lIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~---~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  373 LIPKLVELLKDP-----NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN---SEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             CcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC---CCccccHHHHHHHHHHhcCHH
Confidence            999999999875     456778899999999999999999999999999988774   567777889999999999999


Q ss_pred             cHHHHHhcCcHHHHHHHc-CCHHHHHHHHHHHHHhcCCc-ccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064          297 NISFILETDLIRYLLEML-GDMELSERILSILSNLVSTP-EGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA  374 (519)
Q Consensus       297 n~~~l~~~g~v~~Lv~lL-~~~~v~~~Al~~L~nLs~~~-e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~  374 (519)
                      |.+.+++.++++.|+... +..+  ...+.+++|++.++ ..+..+.   +.+..|+.++...++++..-++.++|.||+
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D--~lLlKlIRNiS~h~~~~k~~f~---~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRD--PLLLKLIRNISQHDGPLKELFV---DFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhccc--HHHHHHHHHHHhcCchHHHHHH---HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            999999999999999776 2222  12457999999976 4444443   388999999986778899999999999999


Q ss_pred             cCChhhHHHHHHcCcHHHHHHHhhcC--CHHHHHHHHHHHHHhhhcC
Q 010064          375 HKSYGDRQAMIEAGIASALLELTLLG--STLAQKRASRILECLRVDK  419 (519)
Q Consensus       375 ~~~~~~~~~i~~~G~i~~Ll~Ll~~g--s~~~~~~A~~~L~~l~~~~  419 (519)
                      ..+....+.+.+.+.+|-|..++..|  .+++.-.+..++..++.|+
T Consensus       520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~  566 (708)
T PF05804_consen  520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP  566 (708)
T ss_pred             cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence            87666667777889999999999876  3478888888888888554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=4.2e-21  Score=212.96  Aligned_cols=269  Identities=19%  Similarity=0.198  Sum_probs=235.4

Q ss_pred             HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC--C-------CHHHHHHHHHHHHHHhccChhhHHHHHh-cC
Q 010064          105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS--E-------SEEQRREAASKVRSLAKENSETRVTLAM-LG  174 (519)
Q Consensus       105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s--~-------~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G  174 (519)
                      .+.+++.|++++++|+++..+.+.|+++.|..||..-+.  +       +..++.+|+++|.||++++..++..++. .|
T Consensus       315 lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  315 LCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            568889999999999999999999998888888876531  1       2347899999999999999999998876 79


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccCC-C
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKL-IESPVAPNPSVSEAIVANFLGLSALD-S  251 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~~-~  251 (519)
                      +++.+|..|.+..++++...+.+|+||+|..+.| |+.+-+.|-|..|+.+ ++..   .+....+++.+||||+.+- +
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~---kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK---KESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc---ccchHHHHHHHHhhhhhcccc
Confidence            9999999999999999999999999999998888 5566678999999885 6666   6678889999999999874 7


Q ss_pred             Chhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcCCHH--HHHHHH
Q 010064          252 NKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLGDME--LSERIL  324 (519)
Q Consensus       252 ~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al  324 (519)
                      ||..|.+ .|++.|||.+|....+.....+...|-.+|.|.+.    ..++++.+.+.+++..|++.|++..  ++.++|
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence            8999988 89999999999875445678899999999999876    3458889999999999999998776  789999


Q ss_pred             HHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          325 SILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       325 ~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                      ++||||+. +++.++.+++ .|+++.|..+++ +.+..+.+-++.+|.||....+
T Consensus       552 GTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIh-SKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  552 GTLWNLSARSPEDQQMLWD-DGAVPMLRNLIH-SKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhhcCCHHHHHHHHh-cccHHHHHHHHh-hhhhhhhhhHHHHHHHHhcCCc
Confidence            99999998 8999999999 799999999999 6788888999999999988754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=5e-18  Score=186.59  Aligned_cols=304  Identities=19%  Similarity=0.250  Sum_probs=255.0

Q ss_pred             hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064          104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML  183 (519)
Q Consensus       104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL  183 (519)
                      .....+..|-+++...+|+..|.+.|+   ++.|++++.+++.+.+..|++.|.||+.+ +..|..++..|++|.|+.+|
T Consensus       306 llil~v~fLkkLSi~~ENK~~m~~~gi---V~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL  381 (708)
T PF05804_consen  306 LLILAVTFLKKLSIFKENKDEMAESGI---VEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL  381 (708)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCC---HHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence            344555678889999999999999998   99999999999999999999999999965 59999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChH
Q 010064          184 DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVP  263 (519)
Q Consensus       184 ~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~  263 (519)
                      ..+  ..+..++.+|.||+. ++++|..+...+.+|.|++++-...  +..+...+++++.||+.++.+...|.+.++++
T Consensus       382 ~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~--~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~  456 (708)
T PF05804_consen  382 KDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS--EEEVQLELIALLINLALNKRNAQLMCEGNGLQ  456 (708)
T ss_pred             CCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC--CccccHHHHHHHHHHhcCHHHHHHHHhcCcHH
Confidence            754  466789999999999 5999999999999999999766542  45666677888999999988888888877788


Q ss_pred             HHHHHhhcC----------------------------------CCCCCHHHHHHHHHHHHHhcCCCccHHHHH-hcCcHH
Q 010064          264 FLVKTLKNS----------------------------------DKKVSPQAKQDALRALYNLSIFPSNISFIL-ETDLIR  308 (519)
Q Consensus       264 ~LV~lL~~~----------------------------------~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~-~~g~v~  308 (519)
                      .|+......                                  ....+.+....++.+|+||...+.....++ +.+.+|
T Consensus       457 ~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp  536 (708)
T PF05804_consen  457 SLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLP  536 (708)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHH
Confidence            776543221                                  122578899999999999998765555555 569999


Q ss_pred             HHHHHcC----CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064          309 YLLEMLG----DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQA  383 (519)
Q Consensus       309 ~Lv~lL~----~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~  383 (519)
                      .|..+|.    ++++..+++..++.++.++++...+.. .|.++.|+++|... ++.+..-+.+++++.|..+ ++.|+.
T Consensus       537 ~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~  614 (708)
T PF05804_consen  537 WLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREV  614 (708)
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            9999994    346888999999999999999888888 79999999999733 4577888999999999998 456776


Q ss_pred             HH-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          384 MI-EAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       384 i~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      ++ +.+++.-|++++.+.++.+++-|-.+|..+.+.
T Consensus       615 ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  615 LLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            65 578889999999999999999999999999954

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=3.7e-18  Score=183.80  Aligned_cols=287  Identities=23%  Similarity=0.226  Sum_probs=229.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh--hHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL--NKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~--nk~~  211 (519)
                      ++..+.+|.+.++.+|..|+..|..+|+.+.+.|..+...|+|+.||.+|++.+.++|..|+++|.||..++..  ||..
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            78899999999999999999999999999999999999999999999999999999999999999999998766  9999


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----C-C----CCCHHHH
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----D-K----KVSPQAK  281 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~-~----~~~~~~~  281 (519)
                      |.+.++|+.++++++...  |.++++.+.++|||||.++..|..|+.. ++..|-.-+-..     . +    ..+.++.
T Consensus       315 i~~~~Gv~~l~~~Lr~t~--D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQ--DDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhcCChHHHHHHHHhhc--chHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence            999999999999999632  7999999999999999998888887654 355554433211     0 0    1246788


Q ss_pred             HHHHHHHHHhcC-CCccHHHHHhc-CcHHHHHHHcC--------CHHHHHHHHHHHHHhcCCcc------cHHHHh----
Q 010064          282 QDALRALYNLSI-FPSNISFILET-DLIRYLLEMLG--------DMELSERILSILSNLVSTPE------GRKAIS----  341 (519)
Q Consensus       282 ~~A~~aL~nLs~-~~~n~~~l~~~-g~v~~Lv~lL~--------~~~v~~~Al~~L~nLs~~~e------~r~~i~----  341 (519)
                      .+++.+|.|++. +.+.+..+.+. |.|..|+..+.        |...+++|+.+|.||+.--+      .+..+.    
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999998 55688888765 99999998872        34588999999999986111      000000    


Q ss_pred             -------------------------------h------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          342 -------------------------------R------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       342 -------------------------------~------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                                                     .            ++.+|..-..+|..+.++.+.|.++++|-||+.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                           0            011222323344445678899999999999999754


Q ss_pred             h----hHHHH-HHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064          379 G----DRQAM-IEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQV  423 (519)
Q Consensus       379 ~----~~~~i-~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~  423 (519)
                      .    .+..+ .++.+.|.|++|+..++..+..-+..+|.||+.|.-.+.
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~  601 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKE  601 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhh
Confidence            2    24555 688999999999999999999999999999997765444

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.76  E-value=2.5e-17  Score=183.36  Aligned_cols=261  Identities=21%  Similarity=0.227  Sum_probs=224.1

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC------------CCHHHHHHHHHHHHHhcCCChhhHHHHHhc-C
Q 010064          150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF------------QLADSQISSLYALLNLGIGNDLNKAAIVKA-G  216 (519)
Q Consensus       150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s------------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G  216 (519)
                      +.|+..|-+++++ +++|..+.+.|++.++-.+|..            .+..++..+.+||.||.+++..||..+... |
T Consensus       316 caA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  316 CAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            4677888888865 6999999999999999988853            124589999999999999999999999875 9


Q ss_pred             cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064          217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF  294 (519)
Q Consensus       217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~  294 (519)
                      .+..+|..|.+.   ..++....+++|.|||+..+.  |..+-+.|-|..|+...-..   .........+.|||||+.+
T Consensus       395 fMeavVAQL~s~---peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~---~kEsTLKavLSALWNLSAH  468 (2195)
T KOG2122|consen  395 FMEAVVAQLISA---PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN---KKESTLKAVLSALWNLSAH  468 (2195)
T ss_pred             HHHHHHHHHhcC---hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh---cccchHHHHHHHHhhhhhc
Confidence            999999999987   678999999999999987643  77777799999998855442   4556788899999999987


Q ss_pred             C-ccHHHHHhc-CcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064          295 P-SNISFILET-DLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGC  362 (519)
Q Consensus       295 ~-~n~~~l~~~-g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~  362 (519)
                      . +|+..|+.. |++.+|+.+|...      .+.+.+-++|.|.++    ...+|+.+.+ ..++..|+++|+ +.+-.+
T Consensus       469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LK-S~SLTi  546 (2195)
T KOG2122|consen  469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLK-SHSLTI  546 (2195)
T ss_pred             ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhh-hcceEE
Confidence            6 599999876 9999999999532      389999999999987    5667777777 799999999999 678889


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064          363 QEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK  419 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~  419 (519)
                      ..++|++||||...+++.++.+++.|+|+.|..|+.+....+-.-+..+|.||-..+
T Consensus       547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999888888889999988654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=2.2e-14  Score=140.80  Aligned_cols=273  Identities=15%  Similarity=0.216  Sum_probs=228.3

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064          139 KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAG  216 (519)
Q Consensus       139 ~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG  216 (519)
                      .+-.+++......++.+|..++...++.+    +.-+...+|.+|..  ++.++.......+..-|..++.||+.+++.+
T Consensus       114 ~la~~~~~~~l~ksL~al~~lt~~qpdl~----da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~  189 (461)
T KOG4199|consen  114 ELAESPNESVLKKSLEAINSLTHKQPDLF----DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK  189 (461)
T ss_pred             HHhhCCchhHHHHHHHHHHHhhcCCcchh----ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence            33345677777889999988886655544    46688889999854  7788888999999999998999999999999


Q ss_pred             cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh----------hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK----------PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k----------~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      +++.+.+.|....  ...+...+.+++..|..+++.|          ..|+..|++..|+..++..   -++.+...++.
T Consensus       190 il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~---~dp~~L~~l~~  264 (461)
T KOG4199|consen  190 ILELILQVLNREG--KTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG---IDPDSLVSLST  264 (461)
T ss_pred             HHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc---CCccHHHHHHH
Confidence            9999998776553  3467777888999988777654          3456778899999999987   67999999999


Q ss_pred             HHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH------HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhc-cCCCC
Q 010064          287 ALYNLSIFPSNISFILETDLIRYLLEMLGDME------LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVL-NWTDS  359 (519)
Q Consensus       287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~------v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL-~~s~~  359 (519)
                      +|..|+..++.+..+.+.|++..|+.++.|..      +...++.+|+.|+.++..+..|++ .|+.+.++.++ .+.++
T Consensus       265 tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~  343 (461)
T KOG4199|consen  265 TLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDD  343 (461)
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCC
Confidence            99999999999999999999999999997632      667899999999999999999999 79999999876 45678


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc-C-CHHHHHHHHHHHHHhhhcCCC
Q 010064          360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL-G-STLAQKRASRILECLRVDKGK  421 (519)
Q Consensus       360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-g-s~~~~~~A~~~L~~l~~~~~~  421 (519)
                      |.+.++++.+++-||..++++...+++.|+-...++-+.- + ...+|+.|+++++|+....+.
T Consensus       344 p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~  407 (461)
T KOG4199|consen  344 PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE  407 (461)
T ss_pred             hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999987766666653 3 457899999999999965443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=3.2e-14  Score=139.73  Aligned_cols=301  Identities=17%  Similarity=0.182  Sum_probs=240.3

Q ss_pred             HHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064          106 SEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ--SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML  183 (519)
Q Consensus       106 ~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL  183 (519)
                      .+.|.+|..+.+....   +.++.+   +..++++|.  .++.++-......++.-|..++.+|..+.+.++.+.+...|
T Consensus       125 ~ksL~al~~lt~~qpd---l~da~g---~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l  198 (461)
T KOG4199|consen  125 KKSLEAINSLTHKQPD---LFDAEA---MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVL  198 (461)
T ss_pred             HHHHHHHHHhhcCCcc---hhcccc---HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence            3445555555433221   224444   777777775  45667778888999998877889999999999999999777


Q ss_pred             cC-CCHHHHHHHHHHHHHhcCCCh---------hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064          184 DF-QLADSQISSLYALLNLGIGND---------LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK  253 (519)
Q Consensus       184 ~s-~~~~~~~~a~~aL~NLa~~~~---------~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k  253 (519)
                      .. +...+.....++++-|..+++         .+...|.+.|++..|++.++...  ++.+...+..+|..|+..++.+
T Consensus       199 ~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~--dp~~L~~l~~tl~~lAVr~E~C  276 (461)
T KOG4199|consen  199 NREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI--DPDSLVSLSTTLKALAVRDEIC  276 (461)
T ss_pred             cccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC--CccHHHHHHHHHHHHHHHHHHH
Confidence            55 444677889999999997532         24667888899999999998765  5777888889999999999999


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHH
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELSERILSILSN  329 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~n  329 (519)
                      ..|.+.|++..|+.++.+...++.......++..|+-|+.+++++..+++.|+.+.++.++    .+|.+.+.++.+++-
T Consensus       277 ~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~  356 (461)
T KOG4199|consen  277 KSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI  356 (461)
T ss_pred             HHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            9999999999999999874122233456788999999999999999999999999999887    567799999999999


Q ss_pred             hcC-CcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064          330 LVS-TPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR  407 (519)
Q Consensus       330 Ls~-~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~  407 (519)
                      |+. .|++-..+++ .|+-...++.|+.+ ....+|.+|||.+.||...+.+++..++..| +..|+.......+.....
T Consensus       357 l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~  434 (461)
T KOG4199|consen  357 LCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAA  434 (461)
T ss_pred             HHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHH
Confidence            998 8888888888 67777888888733 3457899999999999999888899888877 677788888888888888


Q ss_pred             HHHHHHHhh
Q 010064          408 ASRILECLR  416 (519)
Q Consensus       408 A~~~L~~l~  416 (519)
                      |..+|+-|-
T Consensus       435 akaALRDLG  443 (461)
T KOG4199|consen  435 AKAALRDLG  443 (461)
T ss_pred             HHHHHHhcC
Confidence            888887654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.64  E-value=1.9e-14  Score=155.46  Aligned_cols=309  Identities=19%  Similarity=0.188  Sum_probs=238.4

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh--hHHHHHhcCCHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSE--TRVTLAMLGAIPP  178 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~--~r~~l~~~G~i~~  178 (519)
                      +..|..+..-+-.++.. +..+..++..|+   ++.||.+|.+.+.+++..|+.+|+||...+..  ++..+.+.++|+.
T Consensus       247 ~~~qsnaaaylQHlcfgd~~ik~~vrqlgg---I~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~  323 (717)
T KOG1048|consen  247 PSVQSNAAAYLQHLCFGDNKIKSRVRQLGG---IPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT  323 (717)
T ss_pred             hhhhHHHHHHHHHHHhhhHHHHHHHHHhcc---HHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH
Confidence            44555555555556655 456666766777   99999999999999999999999999988654  8999999999999


Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC-----CC------CHHHHHHHHHHHHHh
Q 010064          179 LAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV-----AP------NPSVSEAIVANFLGL  246 (519)
Q Consensus       179 Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~-----~~------~~~~~~~a~~aL~~L  246 (519)
                      ++++|+. .|.++++..+.+|+||+.. +..|..|+.. +++.|-.-.-.+-     ++      +..+-..++++|.|+
T Consensus       324 l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNl  401 (717)
T KOG1048|consen  324 LVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNL  401 (717)
T ss_pred             HHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccc
Confidence            9999987 8999999999999999994 7778777765 5555555332211     00      133445667777777


Q ss_pred             cc-CCCChhhhhh-CCChHHHHHHhhcC----------------------------------------------------
Q 010064          247 SA-LDSNKPIIGS-SGAVPFLVKTLKNS----------------------------------------------------  272 (519)
Q Consensus       247 S~-~~~~k~~I~~-~gai~~LV~lL~~~----------------------------------------------------  272 (519)
                      +. ..+.|..+.+ .|.|..|+..++..                                                    
T Consensus       402 Ss~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~  481 (717)
T KOG1048|consen  402 SSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAES  481 (717)
T ss_pred             cchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccc
Confidence            65 3455666665 56677776665421                                                    


Q ss_pred             ----------------------------------------------CCCCCHHHHHHHHHHHHHhcCCCc-----cHHHH
Q 010064          273 ----------------------------------------------DKKVSPQAKQDALRALYNLSIFPS-----NISFI  301 (519)
Q Consensus       273 ----------------------------------------------~~~~~~~~~~~A~~aL~nLs~~~~-----n~~~l  301 (519)
                                                                    ..+.+..+.+.++.+|-||+....     .+..+
T Consensus       482 ~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v  561 (717)
T KOG1048|consen  482 VGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAV  561 (717)
T ss_pred             cccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhh
Confidence                                                          012566678888999999986542     33334


Q ss_pred             -HhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCC-----HHHHHHHHHHHHHH
Q 010064          302 -LETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS-----PGCQEKASYVLMVM  373 (519)
Q Consensus       302 -~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~A~~~L~nL  373 (519)
                       ....++++|+.+|.  ++.++..++.+|.||+.+..++..|..  ++++.|++.|..+..     .++...++.+|.|+
T Consensus       562 ~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~ni  639 (717)
T KOG1048|consen  562 FRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNI  639 (717)
T ss_pred             hhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHH
Confidence             56789999999994  556999999999999999988888874  799999999975444     67888899999999


Q ss_pred             hcCChhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhh
Q 010064          374 AHKSYGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRV  417 (519)
Q Consensus       374 ~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~  417 (519)
                      ...+..+...+++.+.++.|+-+.... ++++-+.|...|..|-.
T Consensus       640 v~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  640 VRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            999899999999999999999998864 67888888888887763

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=1.3e-12  Score=128.48  Aligned_cols=195  Identities=21%  Similarity=0.268  Sum_probs=168.1

Q ss_pred             HhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064          171 AMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL  249 (519)
Q Consensus       171 ~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~  249 (519)
                      .+.+-++.|+.+|+. .++.+++.++.++.|.+. .+.++..|.+.|+++.+..++.++   ++.+++.|+.+|.|++.+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p---~~~vr~~AL~aL~Nls~~   84 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDP---NPSVREKALNALNNLSVN   84 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCC---ChHHHHHHHHHHHhcCCC
Confidence            356678999999986 789999999999999988 599999999999999999999999   899999999999999999


Q ss_pred             CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc--CCHHHHHHHHHHH
Q 010064          250 DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSIL  327 (519)
Q Consensus       250 ~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL--~~~~v~~~Al~~L  327 (519)
                      .+++..|-.  .++.+++...+.  ..+..++..++.+|.||+..+++...+.  +.++.|+.+|  ++..++..++++|
T Consensus        85 ~en~~~Ik~--~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L  158 (254)
T PF04826_consen   85 DENQEQIKM--YIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL  158 (254)
T ss_pred             hhhHHHHHH--HHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence            999888743  578887765552  2477889999999999998877766553  4799999998  4566999999999


Q ss_pred             HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      .||+.++...+.+.. ..++..|+.+++.+.+.++...+..++.||..+
T Consensus       159 ~nLS~np~~~~~Ll~-~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  159 VNLSENPDMTRELLS-AQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHhccCHHHHHHHHh-ccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            999999999888888 589999999999666778888899999999653

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=3.8e-12  Score=125.28  Aligned_cols=190  Identities=22%  Similarity=0.237  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          132 EELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       132 ~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +.++.|+..|.. .++..+..|..++.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+++|.|++. +.+|+.
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~en~~   89 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-NDENQE   89 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-ChhhHH
Confidence            348999999984 578899999999999884 46999999999999999999999999999999999999999 588888


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN  290 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n  290 (519)
                      .|-.  .++.+++.+.+... +..++..++.+|.+|+..++.+..+..  .++.++.+|..    ++..++..++.+|.|
T Consensus        90 ~Ik~--~i~~Vc~~~~s~~l-ns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~----G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   90 QIKM--YIPQVCEETVSSPL-NSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSS----GSEKTKVQVLKVLVN  160 (254)
T ss_pred             HHHH--HHHHHHHHHhcCCC-CCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHc----CChHHHHHHHHHHHH
Confidence            7744  47777775554322 678899999999999998888887754  69999999998    799999999999999


Q ss_pred             hcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcC
Q 010064          291 LSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVS  332 (519)
Q Consensus       291 Ls~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~  332 (519)
                      ||.++++...++.++++..++.++..   .++...++.++.||..
T Consensus       161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999953   4588899999999976

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=1.8e-12  Score=132.43  Aligned_cols=294  Identities=18%  Similarity=0.212  Sum_probs=226.6

Q ss_pred             HHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHH
Q 010064          110 LDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLAD  189 (519)
Q Consensus       110 ~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~  189 (519)
                      .-|+|++++-.....++.-..   +..||+.|...+.+........|..|+.-+ +++..+.+.|.|+.|+++....+++
T Consensus       285 ylLlNlAed~~~ElKMrrkni---V~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~d  360 (791)
T KOG1222|consen  285 YLLLNLAEDISVELKMRRKNI---VAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPD  360 (791)
T ss_pred             HHHHHHhhhhhHHHHHHHHhH---HHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHH
Confidence            358899999888888877777   999999999999999999999999999776 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHh
Q 010064          190 SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL  269 (519)
Q Consensus       190 ~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL  269 (519)
                      ++...++.|+||+.+ ..++..++..|.+|.|..++.+.     .-...|...|..+|.++..|..+....+|+.|.+.+
T Consensus       361 L~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d-----~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v  434 (791)
T KOG1222|consen  361 LRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSD-----TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV  434 (791)
T ss_pred             HHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCc-----ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999995 88999999999999999999876     334567778999999999999999999999999877


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH-------------------------------------
Q 010064          270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE-------------------------------------  312 (519)
Q Consensus       270 ~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~-------------------------------------  312 (519)
                      -++   .+..+-...+..-.||+.+..|.+.+++..++..|+.                                     
T Consensus       435 ~~~---~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~  511 (791)
T KOG1222|consen  435 LSG---TGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG  511 (791)
T ss_pred             Hhc---CCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            664   4555555445455678777777666655555444432                                     


Q ss_pred             HcC---CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064          313 MLG---DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSYGDRQAMIEAG  388 (519)
Q Consensus       313 lL~---~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G  388 (519)
                      +++   +..+..+++++|+||...+-.-..|......+|-+-..|.-. ...+++-..+..++.++.+ ..+...+..+|
T Consensus       512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~  590 (791)
T KOG1222|consen  512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAK  590 (791)
T ss_pred             HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccc
Confidence            111   122566899999999986555556665578899888888721 2345666666666666664 44455566899


Q ss_pred             cHHHHHHHhhc---CCHHHHHHHHHHHHHhhh
Q 010064          389 IASALLELTLL---GSTLAQKRASRILECLRV  417 (519)
Q Consensus       389 ~i~~Ll~Ll~~---gs~~~~~~A~~~L~~l~~  417 (519)
                      +|+.|++|+..   .+.-+-+-.-..++.++.
T Consensus       591 ~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H  622 (791)
T KOG1222|consen  591 LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH  622 (791)
T ss_pred             cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            99999999984   344444445555666664

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.43  E-value=6.2e-11  Score=128.53  Aligned_cols=273  Identities=17%  Similarity=0.192  Sum_probs=218.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      .+.|...|.++++.+|..+++.|.++..++......+.+.++++.++.+|.+++..+...|..+|.+|+.. +..-..++
T Consensus        79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~  157 (503)
T PF10508_consen   79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLF  157 (503)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHh
Confidence            67788889999999999999999999988766677778899999999999999999999999999999985 66667788


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ..+.++.|..++..+   +..++..+..++.+++... +....+.++|.++.++..+.+    .+.-++.+++.+|..|+
T Consensus       158 ~~~~~~~L~~l~~~~---~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~----dDiLvqlnalell~~La  230 (503)
T PF10508_consen  158 DSNLLSKLKSLMSQS---SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS----DDILVQLNALELLSELA  230 (503)
T ss_pred             CcchHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC----ccHHHHHHHHHHHHHHH
Confidence            999999999999986   6788888888888887554 456677779999999999988    79999999999999999


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcC----CH--H--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLG----DM--E--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQE  364 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~----~~--~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe  364 (519)
                      ..+.+...+.+.|+++.|+.++.    |+  .  ..-..+...+||+.... ...+...+.++..|.+++. +.++..+.
T Consensus       231 ~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~-~~v~~~~p~~~~~l~~~~~-s~d~~~~~  308 (503)
T PF10508_consen  231 ETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSP-QEVLELYPAFLERLFSMLE-SQDPTIRE  308 (503)
T ss_pred             cChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhC-CCChhHHH
Confidence            98889999999999999999994    33  1  23344577788887411 1212222346666777777 67899999


Q ss_pred             HHHHHHHHHhcCChhhHHHH-HH-cCcHH----HHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          365 KASYVLMVMAHKSYGDRQAM-IE-AGIAS----ALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       365 ~A~~~L~nL~~~~~~~~~~i-~~-~G~i~----~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      .|..+++.++... +.++.+ .. .+.++    ..-.....++..+|.++..+|..+-.
T Consensus       309 ~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  309 VAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             HHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            9999999999764 445555 43 33444    34444446788999999999999953

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-10  Score=117.73  Aligned_cols=285  Identities=15%  Similarity=0.167  Sum_probs=226.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----C---CHHHHHHHHHHHHHhcCC
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF----Q---LADSQISSLYALLNLGIG  204 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s----~---~~~~~~~a~~aL~NLa~~  204 (519)
                      +.++.|.+..++++.++-...+++|.|+|.++.++|..+.+.|+-..++.+|+.    +   +.+....+...|.|...+
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence            448888888888888889999999999999999999999999998888888875    2   346778888999999999


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCC-hhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSN-KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ  282 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~-k~~I~~~gai~~LV~lL~~~~~~~~~~~~~  282 (519)
                      ++.-++.+.+.|+++.|...+.-+.. +.+..+......++|... .++ .+...+...+-.|++++.+.   ..++...
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~q-Naa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~---v~~d~~e  242 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQ-NAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM---VREDIDE  242 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccc-cHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh---hccchhh
Confidence            99999999999999999998765433 677777777777765432 232 45555677788889998874   7788899


Q ss_pred             HHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC-H------H---HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh
Q 010064          283 DALRALYNLSIFPSNISFILETDLIRYLLEMLGD-M------E---LSERILSILSNLVSTPEGRKAISRVPDAFPILVD  352 (519)
Q Consensus       283 ~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~-~------~---v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~  352 (519)
                      -....|+..+.++.-+..+.+.|.+..++.++.. +      +   ....++....-|...++.-+.+...+.++..++.
T Consensus       243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s  322 (604)
T KOG4500|consen  243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES  322 (604)
T ss_pred             HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence            9999999999999888889999999999988832 1      1   2234444444444555555555553558888888


Q ss_pred             hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-----cCCHHHHHHHHHHHHHhhhcCCCc
Q 010064          353 VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-----LGSTLAQKRASRILECLRVDKGKQ  422 (519)
Q Consensus       353 lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-----~gs~~~~~~A~~~L~~l~~~~~~~  422 (519)
                      .+. +++...+..++-++.|+++. ..++-.+++.|.+..|++++.     +|+...|..+..+|++|.-+-..+
T Consensus       323 w~~-S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk  395 (604)
T KOG4500|consen  323 WFR-SDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK  395 (604)
T ss_pred             Hhc-CCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence            888 67888999999999999987 577888999999999999987     477889999999999999654333

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.31  E-value=5.6e-10  Score=121.13  Aligned_cols=268  Identities=15%  Similarity=0.143  Sum_probs=213.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG  216 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG  216 (519)
                      ++..|...+.+.-..++..|..+.... .....  ..+..+.|...|.++++.++..+++.|.+++.+++.....+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            667777777777778888898877543 33332  455788999999999999999999999999987666677777899


Q ss_pred             cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064          217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~  296 (519)
                      +++.++.++.++   +..+...|+.+|..++..+..-..+...+.+..|..++..    .+..++..+..++.+++...+
T Consensus       120 l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~----~~~~vR~Rv~el~v~i~~~S~  192 (503)
T PF10508_consen  120 LLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ----SSDIVRCRVYELLVEIASHSP  192 (503)
T ss_pred             HHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc----cCHHHHHHHHHHHHHHHhcCH
Confidence            999999999999   8999999999999999988777777788889999999987    577889999999999987655


Q ss_pred             -cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-CHHH----HHHHHH
Q 010064          297 -NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-SPGC----QEKASY  368 (519)
Q Consensus       297 -n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~----qe~A~~  368 (519)
                       ....+.+.|.++.++..|.++|  ++..|+.+|..|+..+.+.+-+.+ .|+++.|+.++.... +|..    --....
T Consensus       193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~  271 (503)
T PF10508_consen  193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGIFDKLSNLLQDSEEDPRLSSLLLPGRMK  271 (503)
T ss_pred             HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence             6667778899999999998766  788999999999999999999999 799999999997432 3311    122345


Q ss_pred             HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ..++++...+...-. .-...+..|.+++...++..+..|..+|..+.
T Consensus       272 f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig  318 (503)
T PF10508_consen  272 FFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIG  318 (503)
T ss_pred             HHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence            667777642221111 11335556667777889999999999999888

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.29  E-value=6.1e-11  Score=102.36  Aligned_cols=117  Identities=31%  Similarity=0.421  Sum_probs=107.6

Q ss_pred             HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc
Q 010064          169 TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA  248 (519)
Q Consensus       169 ~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~  248 (519)
                      .+.+.|+++.|+++|++++..++..++++|.|++.++++....+++.|++|.|+.++.++   ++.++..++++|.+++.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLAA   78 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHcc
Confidence            356889999999999999999999999999999998899999999999999999999998   89999999999999998


Q ss_pred             CCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          249 LDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       249 ~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ..+ .+..+.+.|+++.|++++..    .+..++..++++|.||+
T Consensus        79 ~~~~~~~~~~~~g~l~~l~~~l~~----~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          79 GPEDNKLIVLEAGGVPKLVNLLDS----SNEDIQKNATGALSNLA  119 (120)
T ss_pred             CcHHHHHHHHHCCChHHHHHHHhc----CCHHHHHHHHHHHHHhh
Confidence            764 45666789999999999998    68999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.26  E-value=1.6e-10  Score=99.72  Aligned_cols=117  Identities=26%  Similarity=0.389  Sum_probs=107.9

Q ss_pred             HHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064          125 KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       125 i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      +.+.|.   ++.+++.|.+++...+..|+.+|.+++..+++.+..+.+.|+++.|+.+|.++++.++..++++|.||+.+
T Consensus         3 ~~~~~~---i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           3 VIQAGG---LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             HHHcCC---hHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            345666   99999999999999999999999999988788999999999999999999999999999999999999998


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      .+.....+.+.|+++.|++++...   +..+++.++++|.+|+
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~  119 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLA  119 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhh
Confidence            777888889999999999999998   8999999999999885

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.22  E-value=1.3e-09  Score=114.04  Aligned_cols=279  Identities=14%  Similarity=0.043  Sum_probs=209.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      .+.+++.+|..++.-.+..|+..|..|..............-.+..|...|++ .+...+..|+.+|.+|... ++.|..
T Consensus       102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~  180 (429)
T cd00256         102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA  180 (429)
T ss_pred             chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH
Confidence            47788888888888899999999999775432211111111133455566655 3467788888999999984 999999


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      +.+.++++.|+.+|+.... +..++-.++-++|-||.+++....+...+.|+.|+.+++..   ...++.+-++.+|.||
T Consensus       181 f~~~~~v~~L~~~L~~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nl  256 (429)
T cd00256         181 FVLADGVPTLVKLLSNATL-GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNL  256 (429)
T ss_pred             HHHccCHHHHHHHHhhccc-cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Confidence            9999999999999987521 45778888999999999988777776789999999999985   6788999999999999


Q ss_pred             cCCC-------ccHHHHHhcCcHHHHHHHc----CCHHH-------HHHHHHHHHHhcCCcccHHHHhh-----------
Q 010064          292 SIFP-------SNISFILETDLIRYLLEML----GDMEL-------SERILSILSNLVSTPEGRKAISR-----------  342 (519)
Q Consensus       292 s~~~-------~n~~~l~~~g~v~~Lv~lL----~~~~v-------~~~Al~~L~nLs~~~e~r~~i~~-----------  342 (519)
                      ...+       .....+++.|+.+.+-.+.    .|+++       .+.--..+..|++.++.+.++-.           
T Consensus       257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s  336 (429)
T cd00256         257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS  336 (429)
T ss_pred             hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence            8753       2345566777766554444    35542       22333334555655555554431           


Q ss_pred             --------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          343 --------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       343 --------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                                    .-..+..|+++|..+++|.+..-||.=++.++...|..|..+-+.|+=..+++|+.++++.++..|
T Consensus       337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA  416 (429)
T cd00256         337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEA  416 (429)
T ss_pred             chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence                          123468899999656778888888999999999877788888899999999999999999999999


Q ss_pred             HHHHHHhh
Q 010064          409 SRILECLR  416 (519)
Q Consensus       409 ~~~L~~l~  416 (519)
                      ..+++.|-
T Consensus       417 L~avQklm  424 (429)
T cd00256         417 LLAVQKLM  424 (429)
T ss_pred             HHHHHHHH
Confidence            99999874

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=7.9e-10  Score=113.35  Aligned_cols=253  Identities=18%  Similarity=0.175  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC
Q 010064          150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV  229 (519)
Q Consensus       150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~  229 (519)
                      ..|+..|-+|+. +......+.....|..||+.|+..+.++.......|..|+. ..+||..+.+.|+|..|++++... 
T Consensus       281 rva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~-  357 (791)
T KOG1222|consen  281 RVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQ-  357 (791)
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCC-
Confidence            446677888984 45677778888999999999999999999999999999999 599999999999999999999998 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHH
Q 010064          230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRY  309 (519)
Q Consensus       230 ~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~  309 (519)
                        +++++...+..|+|||.+..+++.+++.|.+|.|+.++.+.    +  -..-|+..|+.++.+++.+.++.-+.+|+.
T Consensus       358 --h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d----~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~  429 (791)
T KOG1222|consen  358 --HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD----T--KHGIALNMLYHLSCDDDAKAMFAYTDCIKL  429 (791)
T ss_pred             --CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc----c--cchhhhhhhhhhccCcHHHHHHHHHHHHHH
Confidence              89999999999999999999999999999999999999773    2  234588899999999999999888899998


Q ss_pred             HHHHc--C-CHHHHHH--------------------------------------HHHHHHHhcCCcc-cHHHHhhcCCcc
Q 010064          310 LLEML--G-DMELSER--------------------------------------ILSILSNLVSTPE-GRKAISRVPDAF  347 (519)
Q Consensus       310 Lv~lL--~-~~~v~~~--------------------------------------Al~~L~nLs~~~e-~r~~i~~~~g~i  347 (519)
                      |...+  + +.++...                                      -...++|++.++. .+..+++   .+
T Consensus       430 lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid---yv  506 (791)
T KOG1222|consen  430 LMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID---YV  506 (791)
T ss_pred             HHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH---HH
Confidence            88655  1 1112222                                      2334445554332 2222333   45


Q ss_pred             hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCC--HHHHHHHHHHHHHhh
Q 010064          348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGS--TLAQKRASRILECLR  416 (519)
Q Consensus       348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs--~~~~~~A~~~L~~l~  416 (519)
                      ..|..++...++...--++.++|.||+...-.+.+.+.+...||-+-..+..|.  .+.+-....++.-++
T Consensus       507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a  577 (791)
T KOG1222|consen  507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA  577 (791)
T ss_pred             HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence            566666664445566677888888888865666777778889998888888653  233434444444333

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.19  E-value=1.3e-09  Score=110.68  Aligned_cols=311  Identities=15%  Similarity=0.055  Sum_probs=232.0

Q ss_pred             hhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCH----HHHHHHHHHHHHHhccChhhHHHHHhcCCHH
Q 010064          103 VSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESE----EQRREAASKVRSLAKENSETRVTLAMLGAIP  177 (519)
Q Consensus       103 ~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~----~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~  177 (519)
                      ..-.+..++|-|++. +++++..+...|+...+-.+++...+.+.    +.-..+...|.|..-++...+..+++.|+++
T Consensus       102 ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~  181 (604)
T KOG4500|consen  102 EVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLN  181 (604)
T ss_pred             cHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHH
Confidence            334455788999975 46788888787773333333333333322    3334566889997777789999999999999


Q ss_pred             HHHHhhc--CCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064          178 PLAGMLD--FQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP  254 (519)
Q Consensus       178 ~Lv~lL~--s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~  254 (519)
                      .|...+.  ..+.+..+..+...+||..--.++ +....++..+.-|++++.+..  .++..+-+.-+|...+.++..|-
T Consensus       182 tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v--~~d~~eM~feila~~aend~Vkl  259 (604)
T KOG4500|consen  182 TLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV--REDIDEMIFEILAKAAENDLVKL  259 (604)
T ss_pred             HHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh--ccchhhHHHHHHHHHhcCcceee
Confidence            9998874  467888888888888887532333 555666788888888887653  46777877778888888889999


Q ss_pred             hhhhCCChHHHHHHhhcC-C---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC-cHHHHHHHcCC--HHHHHHHHHHH
Q 010064          255 IIGSSGAVPFLVKTLKNS-D---KKVSPQAKQDALRALYNLSIFPSNISFILETD-LIRYLLEMLGD--MELSERILSIL  327 (519)
Q Consensus       255 ~I~~~gai~~LV~lL~~~-~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g-~v~~Lv~lL~~--~~v~~~Al~~L  327 (519)
                      .+++.|.+..++.+++.- +   +++.......++....-|..+++.-+.+...+ .+..++.-+.+  .+....+.-++
T Consensus       260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai  339 (604)
T KOG4500|consen  260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI  339 (604)
T ss_pred             ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            999999999999998872 0   11112223334444445556666666677666 78888888854  45788888899


Q ss_pred             HHhcCCcccHHHHhhcCCcchhhhhhccC----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHH
Q 010064          328 SNLVSTPEGRKAISRVPDAFPILVDVLNW----TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTL  403 (519)
Q Consensus       328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~----s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~  403 (519)
                      +|.+..++.+..+++ .+.+..|++.|..    .++-+.|.+++.+|.||+-- -.++..++.+|+.+.++-.+....|.
T Consensus       340 gNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~pp  417 (604)
T KOG4500|consen  340 GNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPP  417 (604)
T ss_pred             HhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCc
Confidence            999999999999999 7999999998853    25678899999999999974 56899999999999999999988888


Q ss_pred             HHHHHHHHHHHhhh
Q 010064          404 AQKRASRILECLRV  417 (519)
Q Consensus       404 ~~~~A~~~L~~l~~  417 (519)
                      ++-.-...|+.+++
T Consensus       418 v~fkllgTlrM~~d  431 (604)
T KOG4500|consen  418 VTFKLLGTLRMIRD  431 (604)
T ss_pred             chHHHHHHHHHHHh
Confidence            88777767766664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2.1e-09  Score=116.49  Aligned_cols=257  Identities=20%  Similarity=0.194  Sum_probs=204.4

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064          132 EELKIVVKDLQSE-SEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN  208 (519)
Q Consensus       132 ~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n  208 (519)
                      ..++.|++-|... ++..|.+|+..|+. |...+++.-..|.-.-+||.||.+|++ .+.+++..|++||.+|+..-++.
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            3577888888766 88899999999998 666666655566566789999999987 67999999999999999888999


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                      -..+++.++||.|++-|..=.  ..++.|.++.+|-.+|...  -..|.+.|++-..+..|.-    -+..+|+.|+.+.
T Consensus       247 ~a~vV~~~aIPvl~~kL~~Ie--yiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDF----FSi~aQR~Alaia  318 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIE--YIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDF----FSIHAQRVALAIA  318 (1051)
T ss_pred             hheeecccchHHHHHhhhhhh--hhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            999999999999998655321  6899999999999999753  3456799999999999988    5889999999999


Q ss_pred             HHhcCC--CccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCC-
Q 010064          289 YNLSIF--PSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDS-  359 (519)
Q Consensus       289 ~nLs~~--~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~-  359 (519)
                      .|.|..  ++.-..+  ..++|.|..+|.  |....+.++-++..++.    .++--+++.. .|.|....++|.-+.. 
T Consensus       319 aN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt~t~  395 (1051)
T KOG0168|consen  319 ANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVTPTI  395 (1051)
T ss_pred             HHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcCccc
Confidence            999865  3333333  357898999995  44578888888888875    4455567777 6999999998873311 


Q ss_pred             --HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064          360 --PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL  399 (519)
Q Consensus       360 --~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~  399 (519)
                        ..+-...+..|..||.+++-....+.+.++...|..++..
T Consensus       396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence              1223445677778888878888889999999999999884

>PRK09687 putative lyase; Provisional

Probab=99.09  E-value=7e-09  Score=104.08  Aligned_cols=223  Identities=13%  Similarity=0.046  Sum_probs=163.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..|+..|.+.+..++..|+..|..+-..           .+++.+..+++++++.++..++++|+.|... ...     
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~-----   87 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMA-KRC-----   87 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc-----
Confidence            67888889999999999999998877532           2567788888999999999999999998763 211     


Q ss_pred             hcCcHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          214 KAGAVHKMLKL-IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       214 ~aG~v~~Lv~l-L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ..-+++.|..+ ++++   ++.++..++.+|-++.......    ...++..|...+..    .+..++..++++|.++.
T Consensus        88 ~~~a~~~L~~l~~~D~---d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~  156 (280)
T PRK09687         88 QDNVFNILNNLALEDK---SACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFD----KSTNVRFAVAFALSVIN  156 (280)
T ss_pred             hHHHHHHHHHHHhcCC---CHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhC----CCHHHHHHHHHHHhccC
Confidence            22367888877 5555   7899999999998875332211    12245556666666    68899999999997653


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                                ...+++.|+.+|.|+  +++..|+.+|+++....         +..++.|+.+|. ..++.++..|++.|
T Consensus       157 ----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~-D~~~~VR~~A~~aL  216 (280)
T PRK09687        157 ----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQ-DKNEEIRIEAIIGL  216 (280)
T ss_pred             ----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence                      223788899999654  58899999999883211         245667888887 67889999999999


Q ss_pred             HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..+-.  +         .+||.|+..+.++.  ++.+|..+|..+-+
T Consensus       217 g~~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        217 ALRKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD  250 (280)
T ss_pred             HccCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence            87543  2         37889999988876  55677777776654

>PRK09687 putative lyase; Provisional

Probab=99.04  E-value=1.6e-08  Score=101.43  Aligned_cols=227  Identities=15%  Similarity=0.089  Sum_probs=172.6

Q ss_pred             hcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCC
Q 010064          127 KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGM-LDFQLADSQISSLYALLNLGIGN  205 (519)
Q Consensus       127 ~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~l-L~s~~~~~~~~a~~aL~NLa~~~  205 (519)
                      ..+..+.+..+.+++.+++..+|..|++.|..|-... ..     ..-+++.|..+ ++.+++.++..++.+|++++.. 
T Consensus        49 ~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-  121 (280)
T PRK09687         49 LRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKK-  121 (280)
T ss_pred             hcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-
Confidence            3355566788888889999999999999999987433 11     11256788777 5678899999999999999754 


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHH
Q 010064          206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDAL  285 (519)
Q Consensus       206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~  285 (519)
                      ..+.    ..-+++.|...+.++   +..++..++.+|..+          ....+++.|+.+|..    .+..++..|+
T Consensus       122 ~~~~----~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d----~~~~VR~~A~  180 (280)
T PRK09687        122 NPLY----SPKIVEQSQITAFDK---STNVRFAVAFALSVI----------NDEAAIPLLINLLKD----PNGDVRNWAA  180 (280)
T ss_pred             cccc----chHHHHHHHHHhhCC---CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcC----CCHHHHHHHH
Confidence            2111    112466677778887   789999998888543          234579999999998    6889999999


Q ss_pred             HHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064          286 RALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ  363 (519)
Q Consensus       286 ~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q  363 (519)
                      .+|.++...+        ..+++.|+.+|.|.  +++..|...|+.+-.           ..+++.|++.|. .++  ++
T Consensus       181 ~aLg~~~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~-~~~--~~  238 (280)
T PRK09687        181 FALNSNKYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELK-KGT--VG  238 (280)
T ss_pred             HHHhcCCCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHc-CCc--hH
Confidence            9999983222        14667899999754  599999999987431           358899999998 333  66


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 010064          364 EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILEC  414 (519)
Q Consensus       364 e~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~  414 (519)
                      ..++.+|.++...           -++|.|..++. ++++.++..|.++|..
T Consensus       239 ~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        239 DLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            7788888887752           27999999997 8899999999888763

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.01  E-value=7.6e-09  Score=105.70  Aligned_cols=231  Identities=15%  Similarity=0.116  Sum_probs=169.9

Q ss_pred             CHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhc------CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          175 AIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKA------GAVHKMLKLIESPVAPNPSVSEAIVANFLGL  246 (519)
Q Consensus       175 ~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a------G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L  246 (519)
                      .+..++.+|+.  .++++....+..+..|...++.....+.+.      ....++++++..+   +..+...++.+|..|
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---DSFIQLKAAFILTSL  132 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---CHHHHHHHHHHHHHH
Confidence            35566666653  688899999999999998766666666651      2678899988888   899999999999998


Q ss_pred             ccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc------CCH---
Q 010064          247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML------GDM---  317 (519)
Q Consensus       247 S~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL------~~~---  317 (519)
                      ....+.+..-...+.++.+++.+.+.....+...+.-|+.+|.+|...+.++..+.+.++++.|..+|      ...   
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            87766554443467789999988864222344567899999999999999999999999999999999      222   


Q ss_pred             HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHH
Q 010064          318 ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLEL  396 (519)
Q Consensus       318 ~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~L  396 (519)
                      .++-.++.++|-|+-+++....+.. .+.++.|+++++.+..+++.+-++.++.||...+.+ ....|+..|+++.+-.|
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            2788999999999999999999988 579999999999778899999999999999987654 77888899988887777


Q ss_pred             hhc--CCHHHHHHHH
Q 010064          397 TLL--GSTLAQKRAS  409 (519)
Q Consensus       397 l~~--gs~~~~~~A~  409 (519)
                      ...  ++++..+-..
T Consensus       292 ~~rk~~Dedl~edl~  306 (312)
T PF03224_consen  292 SERKWSDEDLTEDLE  306 (312)
T ss_dssp             HSS--SSHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHH
Confidence            664  4676665433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.94  E-value=1.9e-07  Score=108.27  Aligned_cols=146  Identities=16%  Similarity=0.102  Sum_probs=94.8

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHH
Q 010064          220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS  299 (519)
Q Consensus       220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~  299 (519)
                      .|+..|+++   ++.++..|+.+|..+.             ..+.|..++..    .+..++..++.+|..+....    
T Consensus       718 ~l~~~L~D~---d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D----~~~~VR~~aa~aL~~~~~~~----  773 (897)
T PRK13800        718 LFAAALGDP---DHRVRIEAVRALVSVD-------------DVESVAGAATD----ENREVRIAVAKGLATLGAGG----  773 (897)
T ss_pred             HHHHHhcCC---CHHHHHHHHHHHhccc-------------CcHHHHHHhcC----CCHHHHHHHHHHHHHhcccc----
Confidence            344555555   5555555555554431             12345555555    56677777777776664321    


Q ss_pred             HHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          300 FILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       300 ~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                          ...++.|..++.|+  .++..|+..|.++...+          ..+..|+..|. ++++.++..|+.+|..+... 
T Consensus       774 ----~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~-d~d~~VR~~Aa~aL~~l~~~-  837 (897)
T PRK13800        774 ----APAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR-ASAWQVRQGAARALAGAAAD-  837 (897)
T ss_pred             ----chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc-CCChHHHHHHHHHHHhcccc-
Confidence                12366777777544  47888888887764321          12345667777 56788888888888876532 


Q ss_pred             hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                                ..++.|+.++.+.++.+|..|..+|..+
T Consensus       838 ----------~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        838 ----------VAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             ----------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence                      2568999999999999999999999887

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.86  E-value=4e-08  Score=100.41  Aligned_cols=231  Identities=18%  Similarity=0.179  Sum_probs=163.2

Q ss_pred             HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccChhhHHHHHh------cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064          132 EELKIVVKDLQ--SESEEQRREAASKVRSLAKENSETRVTLAM------LGAIPPLAGMLDFQLADSQISSLYALLNLGI  203 (519)
Q Consensus       132 ~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~------~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~  203 (519)
                      .....++.+|+  +.+.+.....+..|..+..+++.....+..      .....+++.+++++|.-++..++..|..|..
T Consensus        55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33444455444  467888899999999998888766666655      2368899999999999999999999999998


Q ss_pred             CChhhHHHHHhcCcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHh------hcCCCCC
Q 010064          204 GNDLNKAAIVKAGAVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL------KNSDKKV  276 (519)
Q Consensus       204 ~~~~nk~~iv~aG~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL------~~~~~~~  276 (519)
                      ..+....... .+.++.++.++++... .+...+..++.+|.+|...++.|..+.+.++++.|+.++      .+   ..
T Consensus       135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~---~~  210 (312)
T PF03224_consen  135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSN---SS  210 (312)
T ss_dssp             STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------------
T ss_pred             cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCC---CC
Confidence            6444433322 5678888888876321 034456888999999999999999999999999999999      33   36


Q ss_pred             CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcCCcc--cHHHHhhcCCcchhhh
Q 010064          277 SPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVSTPE--GRKAISRVPDAFPILV  351 (519)
Q Consensus       277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~~~e--~r~~i~~~~g~i~~Lv  351 (519)
                      ..+.+-.++.+++-|+-+++....+...+.|+.|+.++.+   +++..-++++|.||.....  ....|+. .++ ..++
T Consensus       211 ~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~-l~~l  288 (312)
T PF03224_consen  211 GIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGL-LKTL  288 (312)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-H-HHHH
T ss_pred             chhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccH-HHHH
Confidence            8899999999999999999999999999999999999953   3588899999999999554  7788888 344 4455


Q ss_pred             hhccCC--CCHHHHHHHHH
Q 010064          352 DVLNWT--DSPGCQEKASY  368 (519)
Q Consensus       352 ~lL~~s--~~~~~qe~A~~  368 (519)
                      +.|...  .++++.+.--+
T Consensus       289 ~~L~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  289 QNLSERKWSDEDLTEDLEF  307 (312)
T ss_dssp             HHHHSS--SSHHHHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHH
Confidence            555311  46766655433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.77  E-value=1.6e-06  Score=100.73  Aligned_cols=226  Identities=19%  Similarity=0.137  Sum_probs=158.5

Q ss_pred             chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc--------------ChhhHHHHHh------cCCHHHHHHhhcCCCH
Q 010064          129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKE--------------NSETRVTLAM------LGAIPPLAGMLDFQLA  188 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~--------------~~~~r~~l~~------~G~i~~Lv~lL~s~~~  188 (519)
                      +..+.++.|++.|..++..++..|+..|..+...              ++..|...++      .+-...|+..|+++++
T Consensus       649 ~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~  728 (897)
T PRK13800        649 TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDH  728 (897)
T ss_pred             cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCH
Confidence            3445578888889888889999888888776421              1122222211      1223344444444455


Q ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHH
Q 010064          189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT  268 (519)
Q Consensus       189 ~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~l  268 (519)
                      .++..|+.+|..+              +..+.|..++.++   +..++..++.+|..+...        ....++.|..+
T Consensus       729 ~VR~~Av~aL~~~--------------~~~~~l~~~l~D~---~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~l  783 (897)
T PRK13800        729 RVRIEAVRALVSV--------------DDVESVAGAATDE---NREVRIAVAKGLATLGAG--------GAPAGDAVRAL  783 (897)
T ss_pred             HHHHHHHHHHhcc--------------cCcHHHHHHhcCC---CHHHHHHHHHHHHHhccc--------cchhHHHHHHH
Confidence            5555555554443              2345677888888   899999999999887542        22347889999


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCc
Q 010064          269 LKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDA  346 (519)
Q Consensus       269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~  346 (519)
                      +..    .++.++..|+.+|.++....         .++..|+..|.|++  ++..|+.+|..+..           ...
T Consensus       784 l~D----~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a  839 (897)
T PRK13800        784 TGD----PDPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVA  839 (897)
T ss_pred             hcC----CCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cch
Confidence            987    68999999999999885432         12355777786554  88999999987642           346


Q ss_pred             chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064          347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC  414 (519)
Q Consensus       347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~  414 (519)
                      ++.|+.+|. +.++.++..|+++|..+. .++.         ..+.|...+.+.++.++..|.++|..
T Consensus       840 ~~~L~~~L~-D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        840 VPALVEALT-DPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            689999998 678999999999999872 2233         57788899999999999999999863

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.70  E-value=9.2e-07  Score=90.94  Aligned_cols=263  Identities=18%  Similarity=0.158  Sum_probs=193.4

Q ss_pred             HHHHHHHhcCCCHHH--HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          134 LKIVVKDLQSESEEQ--RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~--~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +..|++++...+.+.  +.+|++.|..+..  .++++.++..| +..++.+-+. ..++.+...+.+|.|+..++++...
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~  258 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ  258 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888999999888764  8999999998773  36888888766 4444444443 6688899999999999999999999


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                      .++++|+++.++-..+..   ++.+...++-+|.|.+.+.  ..+..|++..+..+|.-+-.+    .+.-.+..|+-+.
T Consensus       259 ~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s----kDel~R~~AClAV  331 (832)
T KOG3678|consen  259 RLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS----KDELLRLHACLAV  331 (832)
T ss_pred             HHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc----hHHHHHHHHHHHH
Confidence            999999999988888777   7899888888898877654  557888898888999888776    6888899999999


Q ss_pred             HHhcCCCccHHHHHhcC---cHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064          289 YNLSIFPSNISFILETD---LIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK  365 (519)
Q Consensus       289 ~nLs~~~~n~~~l~~~g---~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~  365 (519)
                      +-|+.+.+--..+-.+|   .|.+|+..++...+..-+            ..-+-...+..+..|+-+|. +..-+.|.-
T Consensus       332 ~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~------------hd~aQG~~~d~LqRLvPlLd-S~R~EAq~i  398 (832)
T KOG3678|consen  332 AVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA------------HDYAQGRGPDDLQRLVPLLD-SNRLEAQCI  398 (832)
T ss_pred             hhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh------------hhhhccCChHHHHHhhhhhh-cchhhhhhh
Confidence            99998887666655555   566676666443332211            11111122456778888888 444455544


Q ss_pred             HHHHHHHHh-cCChhhHHHHH-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064          366 ASYVLMVMA-HKSYGDRQAMI-EAGIASALLELTLLGSTLAQKRASRILECLRVDK  419 (519)
Q Consensus       366 A~~~L~nL~-~~~~~~~~~i~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~  419 (519)
                      +++-++.=+ ..+...+..++ +-|+|+.|.++..+.+....+-|..+|..+-++-
T Consensus       399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV  454 (832)
T KOG3678|consen  399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV  454 (832)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence            444444322 23334444444 6799999999999888888888999999988653

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.8e-06  Score=87.02  Aligned_cols=185  Identities=21%  Similarity=0.231  Sum_probs=150.5

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML  222 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv  222 (519)
                      +.+.+.+..|...|..++ ++-++...+...|+..+|+.+|++.+..+++.|+++|+.++.+|+...+.+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            447788999999999999 5568899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHH
Q 010064          223 KLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISF  300 (519)
Q Consensus       223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~  300 (519)
                      ..+.+..  +..++..|..++.+|-.+. .....+...++...|..++.+.  ..+...++.++..+.+|..... ....
T Consensus       173 ~~ls~~~--~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~--~~~~~lkrK~~~Ll~~Ll~~~~s~~d~  248 (342)
T KOG2160|consen  173 KILSSDD--PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN--NTSVKLKRKALFLLSLLLQEDKSDEDI  248 (342)
T ss_pred             HHHccCC--CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC--CcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence            9998652  4667788888998887664 3455666667799999999883  4688899999999999987655 4444


Q ss_pred             HHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064          301 ILETDLIRYLLEMLG--DMELSERILSILSNLVS  332 (519)
Q Consensus       301 l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~  332 (519)
                      +...+....+..+..  +.++.+.++.++..+..
T Consensus       249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            445566666666663  44577777777666555

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=4.9e-06  Score=90.47  Aligned_cols=276  Identities=14%  Similarity=0.170  Sum_probs=207.6

Q ss_pred             hHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCh-
Q 010064          131 LEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGND-  206 (519)
Q Consensus       131 ~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~-  206 (519)
                      .|.++.|+....+.. .+.|..|+..|..+++   ++|..++. -++++|+..|+.  .|++....++.+++++..+.+ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            355888888887665 5789999999999995   58887765 457899999976  689999999999999998653 


Q ss_pred             -----hhH----------HHHH-hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhh-hCCChHHHHH
Q 010064          207 -----LNK----------AAIV-KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIG-SSGAVPFLVK  267 (519)
Q Consensus       207 -----~nk----------~~iv-~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~-~~gai~~LV~  267 (519)
                           ..+          ..++ ..+-|..|+..+...   +-.++..++..|.+|-..-  +.+..+. ..-+|..|+.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~---DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF---DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh---chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence                 112          2233 458899999999887   8889999999888866543  3355554 4788999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH-----H-HHHHHHHHHHHhcCCcccHHHH
Q 010064          268 TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM-----E-LSERILSILSNLVSTPEGRKAI  340 (519)
Q Consensus       268 lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~-----~-v~~~Al~~L~nLs~~~e~r~~i  340 (519)
                      +|..    .-..++-.++-.|..|+.++.++++++.. +++..|..++...     . +.+.|+..|-||-.+....+.+
T Consensus       174 lL~D----srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~  249 (970)
T KOG0946|consen  174 LLRD----SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNF  249 (970)
T ss_pred             HHhh----hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhH
Confidence            9988    57788999999999999999999998875 8999999999432     2 8899999999999854444445


Q ss_pred             hhcCCcchhhhhhccCC--CC-------H-HH--HHHHHHHHHHHhcCC--h----hhHHHHHHcCcHHHHHHHhhcC--
Q 010064          341 SRVPDAFPILVDVLNWT--DS-------P-GC--QEKASYVLMVMAHKS--Y----GDRQAMIEAGIASALLELTLLG--  400 (519)
Q Consensus       341 ~~~~g~i~~Lv~lL~~s--~~-------~-~~--qe~A~~~L~nL~~~~--~----~~~~~i~~~G~i~~Ll~Ll~~g--  400 (519)
                      ....+.|+.|..+|.+.  ++       + .+  .-.+..++..|..-.  .    .+.+.+.+.+++..|..++.+.  
T Consensus       250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v  329 (970)
T KOG0946|consen  250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV  329 (970)
T ss_pred             HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence            44489999999888643  11       1 11  233455555555321  1    2345677899999999998876  


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 010064          401 STLAQKRASRILECLRV  417 (519)
Q Consensus       401 s~~~~~~A~~~L~~l~~  417 (519)
                      ..+++..+...++....
T Consensus       330 p~dIltesiitvAevVR  346 (970)
T KOG0946|consen  330 PADILTESIITVAEVVR  346 (970)
T ss_pred             cHhHHHHHHHHHHHHHH
Confidence            34677777777777764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.66  E-value=2.6e-06  Score=91.12  Aligned_cols=142  Identities=19%  Similarity=0.160  Sum_probs=108.9

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCcc-HHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhh
Q 010064          275 KVSPQAKQDALRALYNLSIFPSN-ISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPIL  350 (519)
Q Consensus       275 ~~~~~~~~~A~~aL~nLs~~~~n-~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~L  350 (519)
                      ..+......|+-++.+++..-.. +.-+-...+..+|++++.+|+  +...++++|.||+. +...|..+.. .|+|..|
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l  466 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDIL  466 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHH
Confidence            35555666666666666544321 111334578899999998776  78899999999998 7788888998 7999999


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG-IASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G-~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .+++. +.++.++..+.|+|.++..+..+..+...-.. .-..+..+..++++.+|+++..+|+||..+
T Consensus       467 ~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  467 ESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            99999 67888999999999999988665544333222 345577888899999999999999999865

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.7e-06  Score=85.85  Aligned_cols=181  Identities=19%  Similarity=0.192  Sum_probs=142.7

Q ss_pred             hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh
Q 010064          104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML  183 (519)
Q Consensus       104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL  183 (519)
                      .+..++--|.-+.++=.|...+...|+   +.+++..|.+.+..+|..|+++|...+..++.....+.+.|+.+.|+.+|
T Consensus        99 ~ke~ald~Le~lve~iDnAndl~~~gg---l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDIDNANDLISLGG---LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhHhhccC---HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            344444444445566566667767777   88999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCC
Q 010064          184 DF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGA  261 (519)
Q Consensus       184 ~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~ga  261 (519)
                      .+ ++..++..|+.|+.+|..+++.....+...++...|..+++++.. +..++..++..|..|...... +..+...+.
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~-~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNT-SVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            87 556788999999999999999999999999999999999999632 667777777777776654433 444444666


Q ss_pred             hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ...++.+...    .+..+...++.++..+.
T Consensus       255 ~~~~~~l~~~----l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  255 QRVLENLISS----LDFEVNEAALTALLSLL  281 (342)
T ss_pred             hHHHHHHhhc----cchhhhHHHHHHHHHHH
Confidence            6677777666    56777777777765544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.57  E-value=3e-06  Score=86.62  Aligned_cols=277  Identities=14%  Similarity=0.050  Sum_probs=200.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcC-CHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLG-AIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G-~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ....+.+|...+.-....+.+.|..++.-.. .+....+.. ....|-..+++ .+.+....++++|--+... ++.|-.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence            4556677777777666667777777664321 111110100 12233334444 6667777788899999885 899999


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ++.+.++..|+..+.+..- +-.++-..+-++|-|+.++...+.+...+.|+.|.++++..   ...++.+-.+.++.|+
T Consensus       194 ~v~adg~~~l~~~l~s~~~-~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~Nl  269 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKC-GFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRNL  269 (442)
T ss_pred             eeecCcchhhHHHHhccCc-chhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            9999999999998843211 56778888899999999998888887789999999999985   7788999999999999


Q ss_pred             cCCCc-------cHHHHHhcCcHHHHHHHc----CCHH-------HHHHHHHHHHHhcCCcccHHHHhh-----------
Q 010064          292 SIFPS-------NISFILETDLIRYLLEML----GDME-------LSERILSILSNLVSTPEGRKAISR-----------  342 (519)
Q Consensus       292 s~~~~-------n~~~l~~~g~v~~Lv~lL----~~~~-------v~~~Al~~L~nLs~~~e~r~~i~~-----------  342 (519)
                      ....+       ....++..++.+.+-.+.    .|++       +.+.--.-.-.|++.++...++..           
T Consensus       270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~  349 (442)
T KOG2759|consen  270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKS  349 (442)
T ss_pred             hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccc
Confidence            87662       344566666666554444    3444       333333444456665555555432           


Q ss_pred             --------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          343 --------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       343 --------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                                    .-..+..|+.+|+.+.+|.+-.-||.=+....+..|+.+..+.+.|+=..+++|+.+.+|+++-.|
T Consensus       350 e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A  429 (442)
T KOG2759|consen  350 EKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA  429 (442)
T ss_pred             cchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence                          113467889999866678888888988999999888889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 010064          409 SRILECLR  416 (519)
Q Consensus       409 ~~~L~~l~  416 (519)
                      ..+++.|-
T Consensus       430 LlavQ~lm  437 (442)
T KOG2759|consen  430 LLAVQKLM  437 (442)
T ss_pred             HHHHHHHH
Confidence            99998764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.57  E-value=1.7e-06  Score=92.55  Aligned_cols=224  Identities=13%  Similarity=0.111  Sum_probs=160.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML  222 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv  222 (519)
                      ..+.+....|+.++.++++.-...|..+....++.+||++|..++..++..++.+|+||......-|..++..|+|+.|.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            34666777788888888877667777787889999999999889999999999999999999888999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh--hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHH
Q 010064          223 KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG--SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NIS  299 (519)
Q Consensus       223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~--~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~  299 (519)
                      .++.+.   +..++..+.|+|.++..+.+...+..  ..=.-..++.+...    .+..+++.+...|+||.++.. ...
T Consensus       468 s~~~~~---~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl~c~~~~svd  540 (678)
T KOG1293|consen  468 SMLTDP---DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNLTCNSRKSVD  540 (678)
T ss_pred             HHhcCC---CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHhhcCcHHHHH
Confidence            999999   89999999999999999877654432  23334566677766    799999999999999998865 566


Q ss_pred             HHHhc-C-cHHHHH---HHcCCHHHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhhcc-------CCCCHHHHHH
Q 010064          300 FILET-D-LIRYLL---EMLGDMELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDVLN-------WTDSPGCQEK  365 (519)
Q Consensus       300 ~l~~~-g-~v~~Lv---~lL~~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~lL~-------~s~~~~~qe~  365 (519)
                      ++++. + .+....   .+-.-.++...-..-+.++..  +...+.++.+   .++.++-.-.       .+.......+
T Consensus       541 fll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~---~fk~lvl~~e~~~n~~q~s~~~qls~~  617 (678)
T KOG1293|consen  541 FLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEG---IFKILVLLAEVNENKKQLSIEQQLSLN  617 (678)
T ss_pred             HHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHHH---HHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            66554 1 122111   222222233333444444444  3344455443   3333332211       1223456678


Q ss_pred             HHHHHHHHhcC
Q 010064          366 ASYVLMVMAHK  376 (519)
Q Consensus       366 A~~~L~nL~~~  376 (519)
                      +.|.+.|+...
T Consensus       618 ~~~~iinl~~~  628 (678)
T KOG1293|consen  618 IMSEIINLTTT  628 (678)
T ss_pred             HHHHHHhccCC
Confidence            89999999875

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=1.3e-05  Score=87.55  Aligned_cols=274  Identities=20%  Similarity=0.226  Sum_probs=185.6

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +..+..++..+.++...+-. +.+        ++.+.+.|.++++.+|..|+.++.++.+.+++.-.   .. .++.+..
T Consensus        93 ~~~~~lAL~~l~~i~~~~~~-~~l--------~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~---~~-~~~~l~~  159 (526)
T PF01602_consen   93 PYIRGLALRTLSNIRTPEMA-EPL--------IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE---DE-LIPKLKQ  159 (526)
T ss_dssp             HHHHHHHHHHHHHH-SHHHH-HHH--------HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH---GG-HHHHHHH
T ss_pred             HHHHHHHHhhhhhhcccchh-hHH--------HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH---HH-HHHHHhh
Confidence            55677888888887733322 222        67788888999999999999999999877654322   22 5899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA  261 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga  261 (519)
                      +|.+.++.++..|+.++..+ ..+++.-..+ -...++.|.+++...   ++-.+..++..|..+........  .....
T Consensus       160 lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~---~~~~q~~il~~l~~~~~~~~~~~--~~~~~  232 (526)
T PF01602_consen  160 LLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDP---DPWLQIKILRLLRRYAPMEPEDA--DKNRI  232 (526)
T ss_dssp             HTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCC---SHHHHHHHHHHHTTSTSSSHHHH--HHHHH
T ss_pred             hccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhccccc---chHHHHHHHHHHHhcccCChhhh--hHHHH
Confidence            99989999999999999999 2223221111 122455555566666   78888888888877765432211  00456


Q ss_pred             hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHH
Q 010064          262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKA  339 (519)
Q Consensus       262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~  339 (519)
                      ++.+..++.+    .+..+...|+.++.++.....     .-..++++|+.+|.  +++++..++..|..|+...  ...
T Consensus       233 i~~l~~~l~s----~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~  301 (526)
T PF01602_consen  233 IEPLLNLLQS----SSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPA  301 (526)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHH
T ss_pred             HHHHHHHhhc----cccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chh
Confidence            8888888887    688899999999998876654     44567788888885  4458888999999998743  222


Q ss_pred             HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh-hcCCHHHHHHHHHHHHHhhh
Q 010064          340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT-LLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll-~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +..   .. ..+..+..++++.++..++.+|..|+.  +.+.+.     +++.|...+ ..+++..+..+...+..+..
T Consensus       302 v~~---~~-~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  302 VFN---QS-LILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HGT---HH-HHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             hhh---hh-hhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            221   11 222334335678899999999999985  344333     466777777 34477788888888887774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3.7e-06  Score=91.99  Aligned_cols=212  Identities=18%  Similarity=0.162  Sum_probs=165.3

Q ss_pred             hHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064          131 LEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN  208 (519)
Q Consensus       131 ~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n  208 (519)
                      ...++.|+.+|+.+ |.++...|+++|.+|+..-+..-..+++.++||.|++-|.. ...++-+.++.||-.|+..   +
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H  286 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---H  286 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---c
Confidence            34589999999765 78999999999999998888888889999999999976655 8899999999999999864   5


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      -..++++|++...+.++.--   +..++..|+++..|....  ++.-..+  ..++|.|..+|+.    .+.+....++-
T Consensus       287 ~~AiL~AG~l~a~LsylDFF---Si~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~----~D~k~ies~~i  357 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFF---SIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSY----QDKKPIESVCI  357 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhh----ccchhHHHHHH
Confidence            56899999999999988766   678888888888886543  2222222  3479999999998    68899999999


Q ss_pred             HHHHhcCC----CccHHHHHhcCcHHHHHHHcCC------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc
Q 010064          287 ALYNLSIF----PSNISFILETDLIRYLLEMLGD------MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN  355 (519)
Q Consensus       287 aL~nLs~~----~~n~~~l~~~g~v~~Lv~lL~~------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~  355 (519)
                      ++.+++..    ++-.+.+...|.|....++|.-      ..+.......|.-|++ .+-....+.. .+....|-.+|.
T Consensus       358 c~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k-~~I~~~L~~il~  436 (1051)
T KOG0168|consen  358 CLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLK-LDIADTLKRILQ  436 (1051)
T ss_pred             HHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHH-hhHHHHHHHHHh
Confidence            99999764    2345667778999888888832      2366677888888888 4666666665 455566666654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=6.2e-05  Score=85.44  Aligned_cols=311  Identities=16%  Similarity=0.114  Sum_probs=190.7

Q ss_pred             hhhHHHHHHHHHcccCC--hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccC---hhhHHHHHhcCCH
Q 010064          102 CVSKSEKLLDLLNLAEG--EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKEN---SETRVTLAMLGAI  176 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~--e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~---~~~r~~l~~~G~i  176 (519)
                      +..|+-++..|.++...  ......+     .+..+.+.+-+...+..+|..|++++...+...   ...+..+..  .+
T Consensus       132 ~~~rE~al~il~s~~~~~~~~~~~~~-----~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~--ll  204 (1075)
T KOG2171|consen  132 PSLRESALLILSSLPETFGNTLQPHL-----DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRD--LL  204 (1075)
T ss_pred             cchhHHHHHHHHhhhhhhccccchhH-----HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHH--Hh
Confidence            44566666666666533  2332222     122455566666666669999998888866443   334444433  55


Q ss_pred             HHHHHhh----cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064          177 PPLAGML----DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       177 ~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                      |.++..+    +.++.+.-..++.+|..|+...++.-...++. +|...+++.++..- +..++..|+..|..++...+.
T Consensus       205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l-~~~~R~~ALe~ivs~~e~Ap~  282 (1075)
T KOG2171|consen  205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKEL-ENSIRHLALEFLVSLSEYAPA  282 (1075)
T ss_pred             HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccc-cHHHHHHHHHHHHHHHHhhHH
Confidence            6555544    45777777788888888887655554444333 55666666655422 556677776666665533211


Q ss_pred             hhhhhh------------------------------------------------------CCChHHHHHHhhcCCCCCCH
Q 010064          253 KPIIGS------------------------------------------------------SGAVPFLVKTLKNSDKKVSP  278 (519)
Q Consensus       253 k~~I~~------------------------------------------------------~gai~~LV~lL~~~~~~~~~  278 (519)
                      ......                                                      +-.+|+++..+..-..+.+.
T Consensus       283 ~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w  362 (1075)
T KOG2171|consen  283 MCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEW  362 (1075)
T ss_pred             HhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCH
Confidence            111100                                                      11222222222111233677


Q ss_pred             HHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhhh
Q 010064          279 QAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVS--TPEGRKAISRVPDAFPILVDV  353 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~l  353 (519)
                      .-+..|+.+|.-++.+.. .... .=..+++..+..|.|+  .++..||.+++-++.  .++..+.-.+  ..++.|+..
T Consensus       363 ~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~  439 (1075)
T KOG2171|consen  363 KERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIAL  439 (1075)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHH
Confidence            778888888888776653 1111 1124566666777665  499999999999998  4555554444  488899999


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHH-HHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064          354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIAS-ALLELTLLGSTLAQKRASRILECLRVDKGKQVS  424 (519)
Q Consensus       354 L~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~-~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~  424 (519)
                      +.+..++.++.+|+.++.|+.....+..-.=.=.+++. .|..|..++++.+|..+..+|+-.++..+..-.
T Consensus       440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~  511 (1075)
T KOG2171|consen  440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFI  511 (1075)
T ss_pred             hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhH
Confidence            99889999999999999998864332111111134555 566677789999999999999999987655544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.43  E-value=5.1e-05  Score=79.96  Aligned_cols=234  Identities=15%  Similarity=0.114  Sum_probs=167.8

Q ss_pred             hcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhc-----CCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 010064          127 KEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAML-----GAIPPLAGMLDFQLADSQISSLYALLN  200 (519)
Q Consensus       127 ~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~-----G~i~~Lv~lL~s~~~~~~~~a~~aL~N  200 (519)
                      +......+..++.+|+. .+.+...+.+..+..|..+++..-..|.+.     ....+++.+|..++.-++..++..|..
T Consensus        48 ~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~  127 (429)
T cd00256          48 DVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK  127 (429)
T ss_pred             cccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence            33335667888888864 456777888888888887876555555553     567888899998888999999999999


Q ss_pred             hcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          201 LGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       201 La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      |......+.......-.++.|...++++.  +...+..++..|..|...++.|..+.+.++++.|+.+|+..  ..+.+.
T Consensus       128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~--~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~--~~~~Ql  203 (429)
T cd00256         128 LACFGLAKMEGSDLDYYFNWLKEQLNNIT--NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA--TLGFQL  203 (429)
T ss_pred             HHhcCccccchhHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc--cccHHH
Confidence            98643322111111113445566666541  36677778888999999999999998888999999999873  237799


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH---HHHHHHHHHHHHhcCCc-------ccHHHHhhcCCcchhh
Q 010064          281 KQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM---ELSERILSILSNLVSTP-------EGRKAISRVPDAFPIL  350 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~---~v~~~Al~~L~nLs~~~-------e~r~~i~~~~g~i~~L  350 (519)
                      +-.++-+++-|+-+++....+...+.|+.|+.++...   ++..-++.+|.||...+       .....+++ . .++.+
T Consensus       204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~-~l~~~  281 (429)
T cd00256         204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-C-KVLKT  281 (429)
T ss_pred             HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-c-ChHHH
Confidence            9999999999999888777777789999999999643   38889999999999832       13345566 3 44556


Q ss_pred             hhhccCC--CCHHHHHHH
Q 010064          351 VDVLNWT--DSPGCQEKA  366 (519)
Q Consensus       351 v~lL~~s--~~~~~qe~A  366 (519)
                      ++.|...  .++++.+.-
T Consensus       282 l~~L~~rk~~DedL~edl  299 (429)
T cd00256         282 LQSLEQRKYDDEDLTDDL  299 (429)
T ss_pred             HHHHhcCCCCcHHHHHHH
Confidence            6666421  355555443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.42  E-value=3e-05  Score=84.63  Aligned_cols=252  Identities=19%  Similarity=0.211  Sum_probs=179.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..+.+.|.++|+..+..|+++|.++.  +++....     +++.+..+|.++++-+|..|+.++..+...+++   .+.
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~  150 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVE  150 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHH
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHH
Confidence            677788899999999999999999988  3344443     368899999999999999999999999875333   333


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      .. .++.+.+++.++   ++.+...|+.++..+   ..+.....  ..++.++..|.......++-.+..++..|..++.
T Consensus       151 ~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i---~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  151 DE-LIPKLKQLLSDK---DPSVVSAALSLLSEI---KCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             GG-HHHHHHHHTTHS---SHHHHHHHHHHHHHH---HCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HH-HHHHHhhhccCC---cchhHHHHHHHHHHH---ccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            33 689999999888   899999999999888   11111111  3444444443310012789999999999999887


Q ss_pred             CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                      .......-  ...++.+..++.+.  .+...++.++.++...+.    +..  .+++.|..+|. +.++.++-.++..|.
T Consensus       222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~-s~~~nvr~~~L~~L~  292 (526)
T PF01602_consen  222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLS-SSDPNVRYIALDSLS  292 (526)
T ss_dssp             SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHT-SSSHHHHHHHHHHHH
T ss_pred             CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhh-cccchhehhHHHHHH
Confidence            65432211  45677777777543  488899999998887655    333  47789999999 678889999999999


Q ss_pred             HHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       372 nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .|+...   ...+.  .....+..+..+.++.++..+..+|..+.+.
T Consensus       293 ~l~~~~---~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  293 QLAQSN---PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HHCCHC---HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             Hhhccc---chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            999764   22222  2222333333478899999999999998854

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=98.41  E-value=0.00015  Score=81.74  Aligned_cols=255  Identities=16%  Similarity=0.148  Sum_probs=178.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..+++.+.+.+.+.|....-.+.++++.+++... +    ++..|.+=+.++++.++-.|+++|.++-..      .+
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~------~i  137 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS------SV  137 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH------HH
Confidence            367778888899999999999999898876655432 2    578888888899999999999999998873      23


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ++. +++.+.+.+.+.   ++-++..|+-++..+-...+  ..+...+.++.|..+|..    .++.+..+|+.+|..+.
T Consensus       138 ~e~-l~~~lkk~L~D~---~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D----~dp~Vv~nAl~aL~eI~  207 (746)
T PTZ00429        138 LEY-TLEPLRRAVADP---DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND----NNPVVASNAAAIVCEVN  207 (746)
T ss_pred             HHH-HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC----CCccHHHHHHHHHHHHH
Confidence            332 566777888887   89999999988888865433  344467889999999887    79999999999999997


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcCCH-H-HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLGDM-E-LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~~~-~-v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                      ...... .-+..+.+..|+..|.+. + .+...+.+|...  .+.......   ..+..+...|+ +.++.+.-.|+.++
T Consensus       208 ~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~~---~il~~l~~~Lq-~~N~AVVl~Aik~i  280 (746)
T PTZ00429        208 DYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESAE---TLLTRVLPRMS-HQNPAVVMGAIKVV  280 (746)
T ss_pred             HhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHHH---HHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence            654322 223455677788777543 3 455666666442  233223222   36667778888 56899999999999


Q ss_pred             HHHhcCC-hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          371 MVMAHKS-YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       371 ~nL~~~~-~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +++.... +...+.+. ..+.++|+.| ..+++.+|--+..-|..+..
T Consensus       281 l~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~  326 (746)
T PTZ00429        281 ANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLV  326 (746)
T ss_pred             HHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence            9988642 22111111 1233666666 35667788777766666653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=3.7e-06  Score=87.92  Aligned_cols=260  Identities=14%  Similarity=0.093  Sum_probs=185.0

Q ss_pred             HHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCC
Q 010064          150 REAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV  229 (519)
Q Consensus       150 ~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~  229 (519)
                      ..++.+|..+++.-.-.|..+.+..++++|++.|+.++..+.-.++..++|+.+....-+..+++.|++..|+.++.+. 
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence            3445666678877778899999999999999999988888888889999999998888899999999999999999988 


Q ss_pred             CCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-c---HHHHHh
Q 010064          230 APNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-N---ISFILE  303 (519)
Q Consensus       230 ~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n---~~~l~~  303 (519)
                        +..++....|.+.++..+..+  +-.....-++..++.+...    ....++.+.+..|.|+.+++. |   +..++.
T Consensus       486 --DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~ND----pc~~vq~q~lQilrNftc~~~knEkskdv~~K  559 (743)
T COG5369         486 --DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTND----PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIK  559 (743)
T ss_pred             --hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcC----cccccHHHHHHHHHhcccccccccccceeEEe
Confidence              789999999999999877544  5566677778999999887    688999999999999998543 2   333333


Q ss_pred             cCcHHHHHHHc----C--CHHHHHHHHHHHHHhcCCcccHHHHh-hcCCcchhhhhhc----------------------
Q 010064          304 TDLIRYLLEML----G--DMELSERILSILSNLVSTPEGRKAIS-RVPDAFPILVDVL----------------------  354 (519)
Q Consensus       304 ~g~v~~Lv~lL----~--~~~v~~~Al~~L~nLs~~~e~r~~i~-~~~g~i~~Lv~lL----------------------  354 (519)
                      .--...|...|    .  .|-..+..+.+|.+++..++..+.++ +....+..+.++|                      
T Consensus       560 ~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~  639 (743)
T COG5369         560 ATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPI  639 (743)
T ss_pred             cChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcc
Confidence            33333344333    1  22233455788888887555444332 2112222222211                      


Q ss_pred             ---------------------------c---CCCCHHHHHHHHHHHHHHhcCC---h------hhHHHHHHcCcHHHHHH
Q 010064          355 ---------------------------N---WTDSPGCQEKASYVLMVMAHKS---Y------GDRQAMIEAGIASALLE  395 (519)
Q Consensus       355 ---------------------------~---~s~~~~~qe~A~~~L~nL~~~~---~------~~~~~i~~~G~i~~Ll~  395 (519)
                                                 +   ...+.+.-.+..|++.|+....   +      +.++.+.+.|.-.-|..
T Consensus       640 s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k  719 (743)
T COG5369         640 SYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK  719 (743)
T ss_pred             ceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence                                       0   0123345556678888875531   1      23444556777777777


Q ss_pred             HhhcCCHHHHHHHHHHHHHhh
Q 010064          396 LTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       396 Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +-.+.++.+++++..+|.+++
T Consensus       720 ~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         720 IQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HhccCcHHHHHHHHHHHHhhh
Confidence            777889999999999999886

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=4.4e-05  Score=83.30  Aligned_cols=283  Identities=15%  Similarity=0.130  Sum_probs=206.2

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCh------h----------hHHHHH-hcCCHHHHHHhhcCCCHHHHH
Q 010064          132 EELKIVVKDLQSE--SEEQRREAASKVRSLAKENS------E----------TRVTLA-MLGAIPPLAGMLDFQLADSQI  192 (519)
Q Consensus       132 ~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~------~----------~r~~l~-~~G~i~~Lv~lL~s~~~~~~~  192 (519)
                      .+++++++.|+.+  |++.-..++..+.++...+.      .          ..+.++ ..+.|..|+.+++..|-.++.
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~  140 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL  140 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence            3489999999755  67778889999999776652      1          223333 378899999999999999999


Q ss_pred             HHHHHHHHhcCCC-hhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHh
Q 010064          193 SSLYALLNLGIGN-DLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTL  269 (519)
Q Consensus       193 ~a~~aL~NLa~~~-~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL  269 (519)
                      .+...|.+|-..- .+.+..++. .-+|..|+.+|.+.   ...++-.++..|..|+.+...-..++. ..+...|..++
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsII  217 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS---REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSII  217 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh---hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHH
Confidence            9999999987642 334555554 57899999999998   678888999899999988777666665 78899999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-----CHH--------H--HHHHHHHHHHhcC-
Q 010064          270 KNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-----DME--------L--SERILSILSNLVS-  332 (519)
Q Consensus       270 ~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-----~~~--------v--~~~Al~~L~nLs~-  332 (519)
                      ...-.....-+..+|+..|-||..++. |...+.+.+.||.|..+|.     |.+        +  .-.++.++.-|+. 
T Consensus       218 eeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP  297 (970)
T KOG0946|consen  218 EEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP  297 (970)
T ss_pred             HhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC
Confidence            874111223478899999999998765 9999999999999998883     321        1  2357777777776 


Q ss_pred             -C-----cccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcC---------cHHH-HHH
Q 010064          333 -T-----PEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYGDRQAMIEAG---------IASA-LLE  395 (519)
Q Consensus       333 -~-----~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G---------~i~~-Ll~  395 (519)
                       +     ..+.+++.. .+++..|..++-+++ ..+++..+.-++.++..++..+...+....         .|-. |+.
T Consensus       298 ~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllms  376 (970)
T KOG0946|consen  298 GNTSSITHQNQKALVS-SHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMS  376 (970)
T ss_pred             CCcHHHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHH
Confidence             1     124456666 789999999888554 347888899999999999888877776521         1222 233


Q ss_pred             Hhhc-CCHHHHHHHHHHHHHhhhc
Q 010064          396 LTLL-GSTLAQKRASRILECLRVD  418 (519)
Q Consensus       396 Ll~~-gs~~~~~~A~~~L~~l~~~  418 (519)
                      ++.. ..+..|-.+...+..+-.+
T Consensus       377 m~ne~q~~~lRcAv~ycf~s~l~d  400 (970)
T KOG0946|consen  377 MFNEKQPFSLRCAVLYCFRSYLYD  400 (970)
T ss_pred             HHhccCCchHHHHHHHHHHHHHhc
Confidence            3333 3455666666666666643

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.35  E-value=5.9e-06  Score=72.12  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh
Q 010064          130 ALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN  208 (519)
Q Consensus       130 ~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n  208 (519)
                      -.+.++.||...+. .+.+.|.....-|.|.+ -|+-+...+.+..++..+|..|..++..+.+-+...|+|+|.+ ..|
T Consensus        14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n   91 (173)
T KOG4646|consen   14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTN   91 (173)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHH
Confidence            34668899998864 46788888889999999 4678999999999999999999999999999999999999995 999


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh
Q 010064          209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS  258 (519)
Q Consensus       209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~  258 (519)
                      ++.|++++++|..+..+.++   ...+...++.+|..|+.... .++.+..
T Consensus        92 ~~~I~ea~g~plii~~lssp---~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSP---PEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             HHHHHHhcCCceEEeecCCC---hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            99999999999999999998   77888888888888886543 3555544

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.00016  Score=71.50  Aligned_cols=233  Identities=18%  Similarity=0.232  Sum_probs=159.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      +..++.+|++.++.++..|+.-+-.|+..  ..+..... .-.++.|.+++....+  .+.|+.+|.|++.. +..++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~l   79 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKL   79 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence            56789999999999999999888888855  33333322 3357778888876555  67789999999994 7777788


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-------CCChHHHHHHhhcC-------------
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-------SGAVPFLVKTLKNS-------------  272 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-------~gai~~LV~lL~~~-------------  272 (519)
                      +.. .+..++.++.++   .......++..|.||+..++....+..       .|.+...+..+...             
T Consensus        80 l~~-~~k~l~~~~~~p---~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDP---QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHH-HHHHHHHHhcCc---ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            777 888888888887   456677778888899877654333221       23333333333222             


Q ss_pred             ---------------------------CCCCCHHH-HHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHH---------
Q 010064          273 ---------------------------DKKVSPQA-KQDALRALYNLSIFPSNISFILET--DLIRYLLEM---------  313 (519)
Q Consensus       273 ---------------------------~~~~~~~~-~~~A~~aL~nLs~~~~n~~~l~~~--g~v~~Lv~l---------  313 (519)
                                                 ..+.+..+ +.-.+.+|.|.|-...+...++..  ..++.++.=         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence                                       01122222 233567788877766655555542  344444322         


Q ss_pred             ------------c-------CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064          314 ------------L-------GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA  374 (519)
Q Consensus       314 ------------L-------~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~  374 (519)
                                  |       .|++++..-+.+|.-|+.+..+|..+.+ .|+.+.+-++=+|..++++.+.+-.++..|.
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~Lv  314 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQMLV  314 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                        2       1244888999999999999999999999 6899988888888888888877766666655


Q ss_pred             cC
Q 010064          375 HK  376 (519)
Q Consensus       375 ~~  376 (519)
                      ..
T Consensus       315 ~~  316 (353)
T KOG2973|consen  315 RL  316 (353)
T ss_pred             hc
Confidence            54

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.19  E-value=2.9e-05  Score=67.86  Aligned_cols=152  Identities=18%  Similarity=0.223  Sum_probs=128.0

Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCccc
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEG  336 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~  336 (519)
                      -+.+..||.-....   .+.+.++..+.-|+|.+-++-|-..+.+..++..++..|..++  +.+-+.+.|+|||.++.+
T Consensus        15 l~Ylq~LV~efq~t---t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n   91 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTT---TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN   91 (173)
T ss_pred             HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence            45677888877774   7899999999999999999999999999999999999997554  899999999999999999


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      .+.|.. .++++.++..+. +......-.|+..+.-|+-+....+..+....++..+.+.....+.+.+.-|...|...
T Consensus        92 ~~~I~e-a~g~plii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   92 AKFIRE-ALGLPLIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             HHHHHH-hcCCceEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999998 799999999998 55666777888999999988777888998888888888887666666666666666543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.0001  Score=79.20  Aligned_cols=271  Identities=14%  Similarity=0.131  Sum_probs=184.7

Q ss_pred             chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH-h---cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064          129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA-M---LGAIPPLAGMLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~---~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      ++.+.++.|..+|.+.+...+.-|..+|.+++.++.+.-+.-. .   .-.+|.++++.+++++.++..|..++-.... 
T Consensus       125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~-  203 (885)
T KOG2023|consen  125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII-  203 (885)
T ss_pred             cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee-
Confidence            6678899999999998888889999999999976543322211 1   2358899999999999999999998877665 


Q ss_pred             ChhhHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064          205 NDLNKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD  283 (519)
Q Consensus       205 ~~~nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~  283 (519)
                       ......++.- -.+..|..+-.++   +++++...+.+|..|......|-.=--.+.|..+++.-+.    .+..+...
T Consensus       204 -~~~qal~~~iD~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd----~dE~VALE  275 (885)
T KOG2023|consen  204 -IQTQALYVHIDKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD----VDENVALE  275 (885)
T ss_pred             -cCcHHHHHHHHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC----cchhHHHH
Confidence             2334444432 3566666666666   8999999999998876442222111124566777776666    57779999


Q ss_pred             HHHHHHHhcCCCccHHHHHh--cCcHHHHHHHc----------C-C-H--------------------------------
Q 010064          284 ALRALYNLSIFPSNISFILE--TDLIRYLLEML----------G-D-M--------------------------------  317 (519)
Q Consensus       284 A~~aL~nLs~~~~n~~~l~~--~g~v~~Lv~lL----------~-~-~--------------------------------  317 (519)
                      |+.....++..+.....+..  ...||.|++-+          + . +                                
T Consensus       276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd  355 (885)
T KOG2023|consen  276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD  355 (885)
T ss_pred             HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence            99999999988743333332  25666665332          2 0 0                                


Q ss_pred             --------------HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064          318 --------------ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQA  383 (519)
Q Consensus       318 --------------~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~  383 (519)
                                    +++....++|--|+..  -++.+...  .+|.|-+.|. ++...++|.++.+|+.++.+   +-+-
T Consensus       356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~-~~~W~vrEagvLAlGAIAEG---cM~g  427 (885)
T KOG2023|consen  356 DDDEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLS-SEEWKVREAGVLALGAIAEG---CMQG  427 (885)
T ss_pred             cccccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcC-cchhhhhhhhHHHHHHHHHH---Hhhh
Confidence                          0222233333333321  23444443  6677777777 57788999999999999954   3333


Q ss_pred             HHH--cCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          384 MIE--AGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       384 i~~--~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +..  ...||-|++++.+..|.+|.-.+|.|....
T Consensus       428 ~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys  462 (885)
T KOG2023|consen  428 FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS  462 (885)
T ss_pred             cccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence            332  247899999999999999999999998765

>PF05536 Neurochondrin: Neurochondrin

Probab=98.02  E-value=0.00037  Score=76.39  Aligned_cols=241  Identities=15%  Similarity=0.124  Sum_probs=160.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh---HHHHHhcCcHHHHHHhhcCCCCC----CHHHHHHHHHHHHHhc
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN---KAAIVKAGAVHKMLKLIESPVAP----NPSVSEAIVANFLGLS  247 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n---k~~iv~aG~v~~Lv~lL~s~~~~----~~~~~~~a~~aL~~LS  247 (519)
                      .+...+.+|+..+++-+.+++..+.++...++.+   ++.+.++=+.+-|-++|+++..+    .......++.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3567789999988888999999999999876643   45688875578888888874321    3455677788888888


Q ss_pred             cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-HHHHHHHH
Q 010064          248 ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME-LSERILSI  326 (519)
Q Consensus       248 ~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-v~~~Al~~  326 (519)
                      ..++....----+-||.|+.++...   .+..+..+|+.+|+.++.+++....+++.|+|+.|+.++.+.. ..+.|+.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHH
Confidence            7665432211245699999999884   4459999999999999999999999999999999999986543 78899999


Q ss_pred             HHHhcCCcccHHHHhhcC----CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh-HH----HHHHcCcHHHHHHHh
Q 010064          327 LSNLVSTPEGRKAISRVP----DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD-RQ----AMIEAGIASALLELT  397 (519)
Q Consensus       327 L~nLs~~~e~r~~i~~~~----g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~-~~----~i~~~G~i~~Ll~Ll  397 (519)
                      |.+|+..... +.+.+..    ..+..|-.... ......+-..+..|..+-...+.. .+    .-.-..+...+..++
T Consensus       163 L~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs-~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  163 LLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFS-SFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHH-hhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            9999873221 1111111    13334444443 222333444566666665543211 11    112233444555566


Q ss_pred             hcC-CHHHHHHHHHHHHHhhhcCC
Q 010064          398 LLG-STLAQKRASRILECLRVDKG  420 (519)
Q Consensus       398 ~~g-s~~~~~~A~~~L~~l~~~~~  420 (519)
                      .+. ++..|..|..+.+.|-+-.+
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G  264 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLG  264 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhC
Confidence            543 66777777777777775533

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.01  E-value=0.0028  Score=66.24  Aligned_cols=269  Identities=19%  Similarity=0.176  Sum_probs=179.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ++.+..++-+++.+++..+.+.+|.+..+ ...-..+.+.+.=-.++.-|..  .+..-+++|++.++.+..- .... .
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~-~  103 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGP-K  103 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCc-c
Confidence            44444455556688899999999998855 4666667777755555566644  3455678999988887753 1121 2


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      -+..|++..++.+...+   +...+..+..+|+.++..  +...+...|++..|++.+.+    +..+.....+.++.++
T Consensus       104 ~~~~~vvralvaiae~~---~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~l  174 (371)
T PF14664_consen  104 EIPRGVVRALVAIAEHE---DDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID----GSFSISESLLDTLLYL  174 (371)
T ss_pred             cCCHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHH
Confidence            23668999999999998   788999999999999876  44666789999999999987    5666888999999999


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcCCH-----------HHHHHHHHHHHHhcCCcccHHHHhhcC-CcchhhhhhccCCCC
Q 010064          292 SIFPSNISFILETDLIRYLLEMLGDM-----------ELSERILSILSNLVSTPEGRKAISRVP-DAFPILVDVLNWTDS  359 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~~~-----------~v~~~Al~~L~nLs~~~e~r~~i~~~~-g~i~~Lv~lL~~s~~  359 (519)
                      ...+..+..+...--+..++.-+.|.           +....+..++..+-.+..+--.+.... .++..|++.|. ..+
T Consensus       175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~-~p~  253 (371)
T PF14664_consen  175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR-LPN  253 (371)
T ss_pred             hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc-CCC
Confidence            99998887766544455555444322           222233334443333333333332211 45666666666 345


Q ss_pred             HHHHHHHHHHHHHHhcCC-------------------h-----------------------------hh----HHHHHHc
Q 010064          360 PGCQEKASYVLMVMAHKS-------------------Y-----------------------------GD----RQAMIEA  387 (519)
Q Consensus       360 ~~~qe~A~~~L~nL~~~~-------------------~-----------------------------~~----~~~i~~~  387 (519)
                      +++++....+++.+-.-.                   .                             .+    -..+++.
T Consensus       254 ~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~  333 (371)
T PF14664_consen  254 PEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEA  333 (371)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHc
Confidence            556655555555442200                   0                             00    1234589


Q ss_pred             CcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 010064          388 GIASALLELTLLG-STLAQKRASRILECL  415 (519)
Q Consensus       388 G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l  415 (519)
                      |.++.|+++..+. ++....+|..+|..+
T Consensus       334 gL~~~L~~li~~~~d~~l~~KAtlLL~el  362 (371)
T PF14664_consen  334 GLLEALVELIESSEDSSLSRKATLLLGEL  362 (371)
T ss_pred             ChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            9999999999987 888899998888755

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00014  Score=78.22  Aligned_cols=275  Identities=16%  Similarity=0.170  Sum_probs=180.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      ++.+++..++.++..|..|+.++-..-...  ....+.. .-.++.|+.+-..+++++|...+.+|.-|... ...|..=
T Consensus       176 ipkfl~f~~h~spkiRs~A~~cvNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dkl~p  252 (885)
T KOG2023|consen  176 IPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDKLVP  252 (885)
T ss_pred             HHHHHHHHhCCChhHHHHHHhhhhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHhccc
Confidence            788999999999999999999998744332  1222222 33677888887779999999999999998863 3333333


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcC----------C-----C-
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNS----------D-----K-  274 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~----------~-----~-  274 (519)
                      .-.++|+.++...++.   +.++.-.|+-..+.++..+-.+..+..  ...||.|++-+...          +     + 
T Consensus       253 hl~~IveyML~~tqd~---dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpD  329 (885)
T KOG2023|consen  253 HLDNIVEYMLQRTQDV---DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPD  329 (885)
T ss_pred             chHHHHHHHHHHccCc---chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCc
Confidence            3357899999998888   889988898888888888766666543  45677776533211          0     0 


Q ss_pred             -C-----------------------------------CCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----
Q 010064          275 -K-----------------------------------VSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----  314 (519)
Q Consensus       275 -~-----------------------------------~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----  314 (519)
                       +                                   .+-..+...+.+|--|+       .+.....++.++.+|    
T Consensus       330 reeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L  402 (885)
T KOG2023|consen  330 REEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHL  402 (885)
T ss_pred             hhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHc
Confidence             0                                   00112222222222221       122233444444444    


Q ss_pred             CCHH--HHHHHHHHHHHhcCCcccHH-HHhhc-CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHHcCc
Q 010064          315 GDME--LSERILSILSNLVSTPEGRK-AISRV-PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS-YGDRQAMIEAGI  389 (519)
Q Consensus       315 ~~~~--v~~~Al~~L~nLs~~~e~r~-~i~~~-~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~-~~~~~~i~~~G~  389 (519)
                      .+++  ++|.+.-+|+.++.   ++. -+... +..+|.|+.+|. ...|-++.-.||+|...+..- .+.++..+. .+
T Consensus       403 ~~~~W~vrEagvLAlGAIAE---GcM~g~~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~wv~~~~~~~~f~-pv  477 (885)
T KOG2023|consen  403 SSEEWKVREAGVLALGAIAE---GCMQGFVPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-PV  477 (885)
T ss_pred             CcchhhhhhhhHHHHHHHHH---HHhhhcccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhhHhcCChHhhhH-HH
Confidence            4554  78888888888874   332 23221 236788889998 678999999999998876531 111222211 24


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccccc
Q 010064          390 ASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGT  426 (519)
Q Consensus       390 i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~~~  426 (519)
                      +..|+.-+.+++.++|+.|+.+.+-+-++.++...|+
T Consensus       478 L~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~  514 (885)
T KOG2023|consen  478 LEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY  514 (885)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence            5556666778999999999999999999988877764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.00  E-value=1e-05  Score=56.49  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=37.8

Q ss_pred             ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064          163 NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG  202 (519)
Q Consensus       163 ~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa  202 (519)
                      +++++..+.+.|++|+|+.+|+++++++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PTZ00429 beta-adaptin; Provisional

Probab=97.97  E-value=0.0033  Score=71.15  Aligned_cols=253  Identities=13%  Similarity=0.056  Sum_probs=146.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..+.+.|.+.++-+|..|+.++.++-..+++   .+...|.++.|.++|...++.+...|+.+|..+...++. . .-.
T Consensus       142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~-l~l  216 (746)
T PTZ00429        142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-K-IES  216 (746)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-h-hHH
Confidence            44556667778888999999998888766543   234567888899999888999999999999998764332 1 122


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      ..+.+..|+..+..-   ++-.+-.++.+|....  +.....  ....+..+...|++    .+..+...|+.++.++..
T Consensus       217 ~~~~~~~Ll~~L~e~---~EW~Qi~IL~lL~~y~--P~~~~e--~~~il~~l~~~Lq~----~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        217 SNEWVNRLVYHLPEC---NEWGQLYILELLAAQR--PSDKES--AETLLTRVLPRMSH----QNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             HHHHHHHHHHHhhcC---ChHHHHHHHHHHHhcC--CCCcHH--HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhcC
Confidence            334566677766654   4555555555553321  211111  12345555666665    577888888888888875


Q ss_pred             CCc-cHHHHHhcCcHHHHHHHcC-CHH------------------------------------HHHHHHHHHHHhcCCcc
Q 010064          294 FPS-NISFILETDLIRYLLEMLG-DME------------------------------------LSERILSILSNLVSTPE  335 (519)
Q Consensus       294 ~~~-n~~~l~~~g~v~~Lv~lL~-~~~------------------------------------v~~~Al~~L~nLs~~~e  335 (519)
                      ..+ .....+-.....+|+.++. +++                                    ++...+.+|..|+.. +
T Consensus       286 ~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~  364 (746)
T PTZ00429        286 RCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-S  364 (746)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-c
Confidence            421 1100000112233333332 222                                    444455555544432 2


Q ss_pred             cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      +-..|+      .-|.+.+. ..+.+....++.++..++..-+.     .-..++..|++++..+...+ ..+...+..+
T Consensus       365 Nv~~IL------~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~I  431 (746)
T PTZ00429        365 VAPEIL------KELAEYAS-GVDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDRRPELL-PQVVTAAKDI  431 (746)
T ss_pred             cHHHHH------HHHHHHhh-cCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcCCchhH-HHHHHHHHHH
Confidence            222222      23444444 34567777788888877765332     12346778888887655443 3566666666


Q ss_pred             h
Q 010064          416 R  416 (519)
Q Consensus       416 ~  416 (519)
                      -
T Consensus       432 l  432 (746)
T PTZ00429        432 V  432 (746)
T ss_pred             H
Confidence            4

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.00034  Score=69.27  Aligned_cols=227  Identities=15%  Similarity=0.134  Sum_probs=151.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh
Q 010064          177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI  255 (519)
Q Consensus       177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~  255 (519)
                      ..||.+|.+.++.++..|...|.+|..+  ..+...-. .-.++.+.+++...   .+  .+.|+.+|.|+|.....+..
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~---~~--~~~a~~alVnlsq~~~l~~~   78 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL---DP--AEPAATALVNLSQKEELRKK   78 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc---cc--ccHHHHHHHHHHhhHHHHHH
Confidence            4678999999999999999999999985  33333322 23588899998876   34  66778899999999988888


Q ss_pred             hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc------CcHHHHHHHcCCHH-----HHHHHH
Q 010064          256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET------DLIRYLLEMLGDME-----LSERIL  324 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~------g~v~~Lv~lL~~~~-----v~~~Al  324 (519)
                      +.+. .+.+++..+.+    .........+..|.||+..++....+...      .++..|+....+.+     -.....
T Consensus        79 ll~~-~~k~l~~~~~~----p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA  153 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTD----PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLA  153 (353)
T ss_pred             HHHH-HHHHHHHHhcC----cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHH
Confidence            8777 88899998877    34566777899999999988754443321      34445555443332     224566


Q ss_pred             HHHHHhcCCcccHHHHhhcCCcch-hhhhhccCCCCHHHH-HHHHHHHHHHhcCChhhHHHHHH--cCcHHHHH------
Q 010064          325 SILSNLVSTPEGRKAISRVPDAFP-ILVDVLNWTDSPGCQ-EKASYVLMVMAHKSYGDRQAMIE--AGIASALL------  394 (519)
Q Consensus       325 ~~L~nLs~~~e~r~~i~~~~g~i~-~Lv~lL~~s~~~~~q-e~A~~~L~nL~~~~~~~~~~i~~--~G~i~~Ll------  394 (519)
                      -++.||+..+.+|+.+.. ...++ ..+-.+. +.+..++ ...+++|.|.|... .+...++.  ..+.|.++      
T Consensus       154 ~vf~nls~~~~gR~l~~~-~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~-~~h~~lL~e~~~lLp~iLlPlagp  230 (353)
T KOG2973|consen  154 PVFANLSQFEAGRKLLLE-PKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDA-KLHEVLLDESINLLPAILLPLAGP  230 (353)
T ss_pred             HHHHHHhhhhhhhhHhcc-hhhhhHhhhhccc-ccchhhhccchHHHHHhhhccc-hhHHHHhcchHHHHHHHHhhcCCc
Confidence            788999999999998887 44222 2222223 2233444 45688999998874 33433332  23344333      


Q ss_pred             ---------------HHhh-----cCCHHHHHHHHHHHHHhhhc
Q 010064          395 ---------------ELTL-----LGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       395 ---------------~Ll~-----~gs~~~~~~A~~~L~~l~~~  418 (519)
                                     +++-     .++|.+++.-..+|-+|+-.
T Consensus       231 ee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT  274 (353)
T KOG2973|consen  231 EELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT  274 (353)
T ss_pred             cccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence                           2222     34677777777777777643

>PF05536 Neurochondrin: Neurochondrin

Probab=97.93  E-value=0.00086  Score=73.51  Aligned_cols=235  Identities=17%  Similarity=0.133  Sum_probs=158.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh---hHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHh
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSE---TRVTLAMLGAIPPLAGMLDF-------QLADSQISSLYALLNL  201 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~---~r~~l~~~G~i~~Lv~lL~s-------~~~~~~~~a~~aL~NL  201 (519)
                      +.++..+++|+..+.+.|..++..+.++.+.++.   .++.+.+.=+.+-|-++|++       +....+..|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4578888999999977888889999999987652   33345565556778888877       3456788899999999


Q ss_pred             cCCChhhHHHHHhcCcHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          202 GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP-SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       202 a~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      +.. ++....---.+-||.|++++.+.   +. .+...+..+|..++..++.+..+.+.|+|+.|++.+.+     .+..
T Consensus        85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-----~~~~  155 (543)
T PF05536_consen   85 CRD-PELASSPQMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-----QSFQ  155 (543)
T ss_pred             cCC-hhhhcCHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-----Ccch
Confidence            983 65543333346799999999887   45 88899999999999999999999999999999999986     5566


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHh----cCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccH--HHHhh---cCCcchh
Q 010064          281 KQDALRALYNLSIFPSNISFILE----TDLIRYLLEMLGD--MELSERILSILSNLVSTPEGR--KAISR---VPDAFPI  349 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~n~~~l~~----~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r--~~i~~---~~g~i~~  349 (519)
                      ...|+.+|.++.........--.    ...++.|-..+..  ...+...+..|.++-...+..  .....   .......
T Consensus       156 ~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g  235 (543)
T PF05536_consen  156 MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG  235 (543)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence            88899999888765431110001    1233344433322  125556778887776633211  11111   0124455


Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064          350 LVDVLNWTDSPGCQEKASYVLMVMAH  375 (519)
Q Consensus       350 Lv~lL~~s~~~~~qe~A~~~L~nL~~  375 (519)
                      |..+|.+.-.+.-+..+..+...|..
T Consensus       236 l~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  236 LRDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            66667644456666666655555544

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=0.00081  Score=76.68  Aligned_cols=282  Identities=17%  Similarity=0.169  Sum_probs=187.3

Q ss_pred             chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064          129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL  207 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~  207 (519)
                      .|.+.++.|++-.+++++..|..|+..|..+...-. ..+..+.  .+.+.+.+.+..++..++..+++++...+...+.
T Consensus       115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~  192 (1075)
T KOG2171|consen  115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLEN  192 (1075)
T ss_pred             chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcc
Confidence            678889999999999999999999999999875421 2221111  1334445555555555999999999999987665


Q ss_pred             hHHHHHhc-CcHHHHHHhh----cCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          208 NKAAIVKA-GAVHKMLKLI----ESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       208 nk~~iv~a-G~v~~Lv~lL----~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      ++...... ..+|.++..+    +.+   +.+....+..+|-.+.....-  ++.+  ...|.+-+++..+  .+-+..+
T Consensus       193 ~~~~~~~~~~llP~~l~vl~~~i~~~---d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n--~~l~~~~  265 (1075)
T KOG2171|consen  193 NKSEVDKFRDLLPSLLNVLQEVIQDG---DDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKN--KELENSI  265 (1075)
T ss_pred             chHHHHHHHHHhHHHHHHhHhhhhcc---chHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhc--ccccHHH
Confidence            56555553 3567666655    444   555566666677666654321  2222  3356666777766  3567889


Q ss_pred             HHHHHHHHHHhcCCCc-cHHHH--HhcCcHHHHHHHcC----CH-----------H---HHHHHHHHHHHhcCCcccHHH
Q 010064          281 KQDALRALYNLSIFPS-NISFI--LETDLIRYLLEMLG----DM-----------E---LSERILSILSNLVSTPEGRKA  339 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~-n~~~l--~~~g~v~~Lv~lL~----~~-----------~---v~~~Al~~L~nLs~~~e~r~~  339 (519)
                      |..|+..|..++.+.. .++..  .-.-.++.++.++.    |+           +   -...|..+|--|+..-.++..
T Consensus       266 R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v  345 (1075)
T KOG2171|consen  266 RHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV  345 (1075)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe
Confidence            9999999999987733 22211  12234555555552    21           0   223566666666664333332


Q ss_pred             HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064          340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK  419 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~  419 (519)
                      +   +-.++.+-.++. +.+..-+.++.-+|..++-+..+.-... =..+++..+..+.++.|++|-.|+.++..++.|-
T Consensus       346 ~---p~~~~~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl  420 (1075)
T KOG2171|consen  346 L---PPLFEALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL  420 (1075)
T ss_pred             h---HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence            2   125566777788 6788899999999999887654433221 2467888999999999999999999999999887


Q ss_pred             CCccc
Q 010064          420 GKQVS  424 (519)
Q Consensus       420 ~~~~~  424 (519)
                      ++.+.
T Consensus       421 ~p~iq  425 (1075)
T KOG2171|consen  421 QPEIQ  425 (1075)
T ss_pred             cHHHH
Confidence            76665

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.0012  Score=74.08  Aligned_cols=244  Identities=14%  Similarity=0.155  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064          148 QRREAASKVRSLAKENSETRVTLA----MLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML  222 (519)
Q Consensus       148 ~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv  222 (519)
                      ...-++.+|+|+.+.+++....+.    ..|.++.++.+|++ .++.++..|+..+.-+.. +.++-.-++..|.+..|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence            445688999999888876554443    36788888888876 788999999999887777 699999999999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC------------------------------
Q 010064          223 KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS------------------------------  272 (519)
Q Consensus       223 ~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~------------------------------  272 (519)
                      .+|.+.    +..++.++-+|..|+++++.-..-...|++.-+..++...                              
T Consensus      1820 ~lLHS~----PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1820 TLLHSQ----PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHhcC----hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            999986    7888888888888888776544444566665555444322                              


Q ss_pred             --------------------------------------------------------------------------------
Q 010064          273 --------------------------------------------------------------------------------  272 (519)
Q Consensus       273 --------------------------------------------------------------------------------  272 (519)
                                                                                                      
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence                                                                                            


Q ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHH
Q 010064          273 --------------------------------------DKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEM  313 (519)
Q Consensus       273 --------------------------------------~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~l  313 (519)
                                                            .+............++..|... +.-...+-.-|-+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                                                  0001111111112222222222 2222333334666666655


Q ss_pred             cCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcH
Q 010064          314 LGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIA  390 (519)
Q Consensus       314 L~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i  390 (519)
                      +...  .+-..|+++|..|+.+.-+..++.. ..++..++..|..  .+.....|+.+|..+..... +....+++.|.|
T Consensus      2056 m~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~-l~~i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQFCCDAMAQ-LPCIDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhcCCcCcHHHHHHHHHHhhccHHHHHHhc-cccchhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            5321  2446799999999999889999998 5788889998873  46777799999999987533 345567789999


Q ss_pred             HHHHHHhhc
Q 010064          391 SALLELTLL  399 (519)
Q Consensus       391 ~~Ll~Ll~~  399 (519)
                      |.|+.|+..
T Consensus      2133 pyLL~LLd~ 2141 (2235)
T KOG1789|consen 2133 PYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhcc
Confidence            999999983

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.89  E-value=0.00051  Score=70.65  Aligned_cols=225  Identities=16%  Similarity=0.210  Sum_probs=161.9

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064          144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM  221 (519)
Q Consensus       144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L  221 (519)
                      .+.+...-|+++|..+.+.+ ++|..+....++..|+..|.+  .+-.+|-..+-+++-|+. ++...+.+-.-+.++.|
T Consensus       169 ~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L  246 (442)
T KOG2759|consen  169 TNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDL  246 (442)
T ss_pred             CCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHH
Confidence            45666777889999999876 999999999999999998843  567899999999999999 47777777667899999


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHhccCCC---Chh----hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH-------
Q 010064          222 LKLIESPVAPNPSVSEAIVANFLGLSALDS---NKP----IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA-------  287 (519)
Q Consensus       222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---~k~----~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a-------  287 (519)
                      ..+++...  .+.+...+++++.|+-...+   .+.    .++..+ ++.-++.|... .=.+.++..+.-..       
T Consensus       247 ~~Ivk~~~--KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~s  322 (442)
T KOG2759|consen  247 SDIVKEST--KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNS  322 (442)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHH
Confidence            99998763  57788889999999876553   222    233344 55555555542 11233332222111       


Q ss_pred             HHHhcCCCc------------------------cHHHHHhc--CcHHHHHHHcC---CHHHHHHHHHHHHHhcC-CcccH
Q 010064          288 LYNLSIFPS------------------------NISFILET--DLIRYLLEMLG---DMELSERILSILSNLVS-TPEGR  337 (519)
Q Consensus       288 L~nLs~~~~------------------------n~~~l~~~--g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~-~~e~r  337 (519)
                      ..-|++.++                        |...+-+.  ..+..|+.+|.   |+-+..-||.=++.... +|+++
T Consensus       323 vq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk  402 (442)
T KOG2759|consen  323 VQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK  402 (442)
T ss_pred             HHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh
Confidence            122333211                        34444444  46788888884   34466678888888888 89999


Q ss_pred             HHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          338 KAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       338 ~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      ..+.. -|+=..++++|+ +++|.++-+|..++-.|..+
T Consensus       403 ~vv~k-~ggKe~vM~Lln-h~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  403 AVVEK-YGGKERVMNLLN-HEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHH-hchHHHHHHHhc-CCCchHHHHHHHHHHHHHhh
Confidence            98888 799999999999 68999999999888777643

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.80  E-value=4.2e-05  Score=53.41  Aligned_cols=40  Identities=35%  Similarity=0.548  Sum_probs=37.9

Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      +++++..+++.|++|.|+++|+++   +..+++.++|+|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~---~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP---DPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS---SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC---CHHHHHHHHHHHHHHh
Confidence            478999999999999999999988   8999999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.80  E-value=0.0038  Score=67.00  Aligned_cols=233  Identities=18%  Similarity=0.175  Sum_probs=159.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCCChhhHHHHHhc-C
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQ-----LADSQISSLYALLNLGIGNDLNKAAIVKA-G  216 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~-----~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G  216 (519)
                      ..+.+...+|+++|+|+...++..|..+.+.|..+.++..|+..     +.+...-..+.|+=++......+..+++. +
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            44678899999999999989999999999999999999999875     78888999999999988777777666664 7


Q ss_pred             cHHHHHHhhc----CCCC----------CCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----CCCCC
Q 010064          217 AVHKMLKLIE----SPVA----------PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----DKKVS  277 (519)
Q Consensus       217 ~v~~Lv~lL~----s~~~----------~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~~~~~  277 (519)
                      ++..|...|.    ....          .+......++.+++|+.........-.....++.|+.++...     .+...
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            7777766542    1100          023345567888899876644332212355677777665432     12234


Q ss_pred             HHHHHHHHHHHHHhcCCCc-c-------H----HHHHhcCcHHHHHHHcC-------C---HHHHHHHHHHHHHhcC-Cc
Q 010064          278 PQAKQDALRALYNLSIFPS-N-------I----SFILETDLIRYLLEMLG-------D---MELSERILSILSNLVS-TP  334 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~~-n-------~----~~l~~~g~v~~Lv~lL~-------~---~~v~~~Al~~L~nLs~-~~  334 (519)
                      ......++.+|.|+=.... .       .    ........+..|+.+|.       +   .+.....+.+|.+++. ..
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~  282 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR  282 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence            5567778888888722110 0       0    00112245677777772       1   1366788888888888 45


Q ss_pred             ccHHHHhh---------------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          335 EGRKAISR---------------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       335 e~r~~i~~---------------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      ..|+.+..               ....-..|+.++.+.. +.++..+...|..||..
T Consensus       283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKE  338 (446)
T ss_pred             HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhh
Confidence            55555432               2345678899998544 99999999999999964

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.0071  Score=60.55  Aligned_cols=282  Identities=13%  Similarity=0.166  Sum_probs=190.8

Q ss_pred             hcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH--HhhcCCCHHHHHHHHHHHHHhcCC
Q 010064          127 KEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA--GMLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       127 ~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv--~lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      ..+.   ++.++..+..+|.++-..|...|..++.. +..-..+.+.....++-  .+-..-+.-++......+..+..-
T Consensus       126 Naei---lklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi  201 (524)
T KOG4413|consen  126 NAEI---LKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI  201 (524)
T ss_pred             hhhH---HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc
Confidence            5555   88999999888988888899999998865 34444454555554442  222224455677778888888877


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC------------
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS------------  272 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~------------  272 (519)
                      ++......-+.|.+..|..=|+...  +.-+...++-....|......++.+.+.|.|..+..++...            
T Consensus       202 SpesaneckkSGLldlLeaElkGte--DtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralm  279 (524)
T KOG4413|consen  202 SPESANECKKSGLLDLLEAELKGTE--DTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALM  279 (524)
T ss_pred             CHHHHhHhhhhhHHHHHHHHhcCCc--ceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH
Confidence            8888888888999999988887632  44555666666677777666677777777776666655332            


Q ss_pred             ---------------------------------CCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCc--HHHHHHHcCCH
Q 010064          273 ---------------------------------DKKVSPQAKQDALRALYNLSIFPSNISFILETDL--IRYLLEMLGDM  317 (519)
Q Consensus       273 ---------------------------------~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~--v~~Lv~lL~~~  317 (519)
                                                       ....+++.+..|+.+|.-|-++.+..+.+...|-  ...|+.-..+.
T Consensus       280 gfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq  359 (524)
T KOG4413|consen  280 GFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ  359 (524)
T ss_pred             HHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc
Confidence                                             1347888899999999999988888888888764  55565555443


Q ss_pred             H---HHHHHHHHHHHhcCC----c----ccHHH------Hhhc---C---CcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064          318 E---LSERILSILSNLVST----P----EGRKA------ISRV---P---DAFPILVDVLNWTDSPGCQEKASYVLMVMA  374 (519)
Q Consensus       318 ~---v~~~Al~~L~nLs~~----~----e~r~~------i~~~---~---g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~  374 (519)
                      .   -++.++.+|.+++..    +    +++..      +.+.   .   .-...+..+++ ...|++.-.+..++..++
T Consensus       360 nahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq-QpfpEihcAalktfTAia  438 (524)
T KOG4413|consen  360 NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ-QPFPEIHCAALKTFTAIA  438 (524)
T ss_pred             cccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc-CCChhhHHHHHHHHHHHH
Confidence            2   567888888888761    1    11111      1110   0   11233445555 457889999999999999


Q ss_pred             cCChhhHHHHHHcCcHHHHHHHhhcC---CHHHHHHHHHHHHHh
Q 010064          375 HKSYGDRQAMIEAGIASALLELTLLG---STLAQKRASRILECL  415 (519)
Q Consensus       375 ~~~~~~~~~i~~~G~i~~Ll~Ll~~g---s~~~~~~A~~~L~~l  415 (519)
                      ..++..+..+..+|.|....+-....   ..+++-..++++++-
T Consensus       439 aqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaea  482 (524)
T KOG4413|consen  439 AQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEA  482 (524)
T ss_pred             cCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHH
Confidence            99888888888888877665554432   334555666666543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.02  Score=59.52  Aligned_cols=255  Identities=16%  Similarity=0.136  Sum_probs=176.0

Q ss_pred             ccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---------hhHHHHHhcCCHHHHHHhhcC
Q 010064          115 LAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS---------ETRVTLAMLGAIPPLAGMLDF  185 (519)
Q Consensus       115 ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---------~~r~~l~~~G~i~~Lv~lL~s  185 (519)
                      ++..+.-...+++..+   ++.++.+|.+.|.++-+..+..++.|+..|.         ..-+.+++.++++.||+-+..
T Consensus       111 lAt~PdLYp~lveln~---V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR  187 (536)
T KOG2734|consen  111 LATMPDLYPILVELNA---VQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER  187 (536)
T ss_pred             hhcChHHHHHHHHhcc---HHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence            3444444444555555   9999999999999999999999999996652         234566678899999988754


Q ss_pred             CC------HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhh
Q 010064          186 QL------ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGS  258 (519)
Q Consensus       186 ~~------~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~  258 (519)
                      -+      ..-...++..+-|+..-.+.....+++.|.+..|+.-+....+ -..-...+.-+|.-+-.+. +++.....
T Consensus       188 LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq~s~e~~~~~~~  266 (536)
T KOG2734|consen  188 LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQNSDENRKLLGP  266 (536)
T ss_pred             hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhccCchhhhhhcC
Confidence            22      2344667888889988778888899999999999886554322 2233444544555444443 47888888


Q ss_pred             CCChHHHHHHhhcC---CC--CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-HHHHHHHHHHHhcC
Q 010064          259 SGAVPFLVKTLKNS---DK--KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME-LSERILSILSNLVS  332 (519)
Q Consensus       259 ~gai~~LV~lL~~~---~~--~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-v~~~Al~~L~nLs~  332 (519)
                      -.+|..|++-+.-.   +|  -...+...+...+|+.+...+.|+..++...+++-..-++.... ..-.++.+|-.+..
T Consensus       267 l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~  346 (536)
T KOG2734|consen  267 LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMF  346 (536)
T ss_pred             cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            88899988766321   11  13466788899999999999999999999988886665665544 56689999998887


Q ss_pred             Ccc---cHHHHhhcCCcchhhhh-hccCCC---------CHHHHHHHHHHHHHHhc
Q 010064          333 TPE---GRKAISRVPDAFPILVD-VLNWTD---------SPGCQEKASYVLMVMAH  375 (519)
Q Consensus       333 ~~e---~r~~i~~~~g~i~~Lv~-lL~~s~---------~~~~qe~A~~~L~nL~~  375 (519)
                      .++   ++..+++ ..++..++- +++ ..         ..+.-++.+.+|+.|-.
T Consensus       347 g~~gt~~C~kfVe-~lGLrtiF~~FMk-~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  347 GPEGTPNCNKFVE-ILGLRTIFPLFMK-TPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             CCCchHHHHHHHH-HHhHHHHHHHHhh-CccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            554   5556666 355555544 342 22         23345666777666654

>TIGR02270 conserved hypothetical protein

Probab=97.62  E-value=0.0059  Score=64.60  Aligned_cols=57  Identities=16%  Similarity=0.035  Sum_probs=40.8

Q ss_pred             CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..+..|..++..   +.++..++++|..+-..           ..++.|++.+.+.  .++..|..++..+..
T Consensus       240 ~a~~~L~~ll~d---~~vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       240 DAQAWLRELLQA---AATRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAGEAFSLITG  296 (410)
T ss_pred             hHHHHHHHHhcC---hhhHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence            355666677762   44777888888766543           3788888887755  388889999998884

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.013  Score=60.92  Aligned_cols=239  Identities=21%  Similarity=0.193  Sum_probs=171.4

Q ss_pred             HHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-----Chhh----HHHHHhcCcHHHH
Q 010064          151 EAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG-----NDLN----KAAIVKAGAVHKM  221 (519)
Q Consensus       151 ~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-----~~~n----k~~iv~aG~v~~L  221 (519)
                      .....++.++ .-|+.--.+.+..+|+.|+.+|.+++.++-.+.+..|..|.-.     +++.    -..+++.++++.|
T Consensus       103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            3556666677 4467777889999999999999999999999999999999832     1222    3456677899999


Q ss_pred             HHhhcCCCCCCHHHHHHH------HHHHHHhccC-CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064          222 LKLIESPVAPNPSVSEAI------VANFLGLSAL-DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF  294 (519)
Q Consensus       222 v~lL~s~~~~~~~~~~~a------~~aL~~LS~~-~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~  294 (519)
                      ++.+..-   +.++.+.+      .+.+-|+..- ++....+++.|.+.+|+.-+...  ..-..-...|...|.-+..+
T Consensus       182 vqnveRL---dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k--~~f~aNk~YasEiLaillq~  256 (536)
T KOG2734|consen  182 VQNVERL---DESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGK--AAFDANKQYASEILAILLQN  256 (536)
T ss_pred             HHHHHHh---hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcc--cCcchhHHHHHHHHHHHhcc
Confidence            9988765   55566554      4455555443 34566677788888888754431  13345577888888887766


Q ss_pred             Cc-cHHHHHhcCcHHHHHHHc-----CC------HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064          295 PS-NISFILETDLIRYLLEML-----GD------MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGC  362 (519)
Q Consensus       295 ~~-n~~~l~~~g~v~~Lv~lL-----~~------~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~  362 (519)
                      .+ ++..+-.-.++..|++-+     .+      .+..++...+|+.+...+++|..+.. +.++....-++. . ....
T Consensus       257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr-~-Kk~s  333 (536)
T KOG2734|consen  257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLR-E-KKVS  333 (536)
T ss_pred             CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHH-H-HHHh
Confidence            65 777777778999988877     22      23778888888888889999999998 455554444444 2 4556


Q ss_pred             HHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHHhh
Q 010064          363 QEKASYVLMVMAHKSY--GDRQAMIEAGIASALLELTL  398 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~--~~~~~i~~~G~i~~Ll~Ll~  398 (519)
                      +..+..+|-..+.+++  .++..+.+.++...+..++-
T Consensus       334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            6678888888888766  67888888777666655555

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.58  E-value=0.0045  Score=66.40  Aligned_cols=272  Identities=15%  Similarity=0.121  Sum_probs=175.3

Q ss_pred             HHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064          152 AASKVRSLAKENSETRVTLAMLGAIPPLAGML----------DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM  221 (519)
Q Consensus       152 Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----------~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L  221 (519)
                      |+.+|+.|+++. .....+....++..|+.+-          ...+..+...|+++|+|+...++..+..+++.|..+.+
T Consensus         1 ~L~~LRiLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            356677777653 5666666666677776665          33678899999999999999999999999999999999


Q ss_pred             HHhhcCCCCC--CHHHHHHHHHHHHHhccC-CCChhhhhh-CCChHHHHHHhhcCC------C-------CCCHHHHHHH
Q 010064          222 LKLIESPVAP--NPSVSEAIVANFLGLSAL-DSNKPIIGS-SGAVPFLVKTLKNSD------K-------KVSPQAKQDA  284 (519)
Q Consensus       222 v~lL~s~~~~--~~~~~~~a~~aL~~LS~~-~~~k~~I~~-~gai~~LV~lL~~~~------~-------~~~~~~~~~A  284 (519)
                      +..|+...+.  +.++.-....+|+-++.. .+.+..+.+ .+++..|+..|....      .       ..+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876331  466777777877777654 345666665 578888877664320      0       1356678889


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--------C---HHHHHHHHHHHHHhcC-Cccc-------HHHH---hh
Q 010064          285 LRALYNLSIFPSNISFILETDLIRYLLEMLG--------D---MELSERILSILSNLVS-TPEG-------RKAI---SR  342 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--------~---~~v~~~Al~~L~nLs~-~~e~-------r~~i---~~  342 (519)
                      +.+|.|+..+......--....++.|+.+|.        +   ......++.+|.||-. ..+.       ...+   ..
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            9999999876543222122344555554431        1   1267788888888732 1111       0000   01


Q ss_pred             cCCcchhhhhhccC----CCCHHHHHH---HHHHHHHHhcCChhhHHHHHH----------------cCcHHHHHHHhhc
Q 010064          343 VPDAFPILVDVLNW----TDSPGCQEK---ASYVLMVMAHKSYGDRQAMIE----------------AGIASALLELTLL  399 (519)
Q Consensus       343 ~~g~i~~Lv~lL~~----s~~~~~qe~---A~~~L~nL~~~~~~~~~~i~~----------------~G~i~~Ll~Ll~~  399 (519)
                      ....+..|+++|..    .....+.+.   .+.+|.+++..+...|+.+..                ...-..|++++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            12456667777642    111122222   355666666665555555543                2345579999999


Q ss_pred             CCHHHHHHHHHHHHHhhhcCCCccc
Q 010064          400 GSTLAQKRASRILECLRVDKGKQVS  424 (519)
Q Consensus       400 gs~~~~~~A~~~L~~l~~~~~~~~~  424 (519)
                      ..+.++..+..+|-.|++....+..
T Consensus       320 ~~~~~k~~vaellf~Lc~~d~~~~v  344 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKEDASRFV  344 (446)
T ss_pred             CCchHHHHHHHHHHHHHhhhHHHHH
Confidence            8899999999999999865544443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.011  Score=59.33  Aligned_cols=267  Identities=12%  Similarity=0.131  Sum_probs=173.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhccCh--hhHH--HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhc
Q 010064          140 DLQSESEEQRREAASKVRSLAKENS--ETRV--TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKA  215 (519)
Q Consensus       140 ~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~--~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a  215 (519)
                      -|..++..+|..|+..+..+..+..  ....  .++..|..+.++.++-..+.++-.+|...+..++. .+..-..+++.
T Consensus        90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeS  168 (524)
T KOG4413|consen   90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFES  168 (524)
T ss_pred             cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhccc
Confidence            3456678899999988888775533  2222  23468999999999999999999999999999999 48888888888


Q ss_pred             CcHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          216 GAVHKMLKL---IESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       216 G~v~~Lv~l---L~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ..++.+-..   .+..    .-++-.....+..+++ .++.....-.+|.+..|..-|+..   .+.-++.+++...+.|
T Consensus       169 ellDdlhlrnlaakcn----diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt---eDtLVianciElvteL  241 (524)
T KOG4413|consen  169 ELLDDLHLRNLAAKCN----DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT---EDTLVIANCIELVTEL  241 (524)
T ss_pred             ccCChHHHhHHHhhhh----hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC---cceeehhhHHHHHHHH
Confidence            776655332   2332    3334444444444433 333444444688888888887763   5667888899999999


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcC--CH-H-HHHHHHHHHHHhcC----CcccHHHHhhc-CCcchhhhhhccCCCCHHH
Q 010064          292 SIFPSNISFILETDLIRYLLEMLG--DM-E-LSERILSILSNLVS----TPEGRKAISRV-PDAFPILVDVLNWTDSPGC  362 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~--~~-~-v~~~Al~~L~nLs~----~~e~r~~i~~~-~g~i~~Lv~lL~~s~~~~~  362 (519)
                      +.....+.++.+.|.|+.+++++.  |. + -...++.....+-.    .+-.-++++.. .-++...++++. ..+|..
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE-mnDpda  320 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDA  320 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchH
Confidence            988888899999999999999993  22 2 23345555444433    11111222210 124556677777 678999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCc--HHHHHHHhhcCCHHH-HHHHHHHHHHhh
Q 010064          363 QEKASYVLMVMAHKSYGDRQAMIEAGI--ASALLELTLLGSTLA-QKRASRILECLR  416 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~~~~~~i~~~G~--i~~Ll~Ll~~gs~~~-~~~A~~~L~~l~  416 (519)
                      ++.|+-+|..|.... +..+.+...|-  ...|+.-..+.+... +..+..+|.++.
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            999999999988763 44565655543  233333223333332 444556666665

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.51  E-value=0.013  Score=64.53  Aligned_cols=275  Identities=14%  Similarity=0.115  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHhc--CCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh
Q 010064          130 ALEELKIVVKDLQ--SESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGND  206 (519)
Q Consensus       130 ~~~~l~~Lv~~L~--s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~  206 (519)
                      .+..+..++.-..  .++..+|..|..+|.+ |-.....+-...-..-+....++.-++++.+++.+|..+|..+..-..
T Consensus       170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence            3444677777554  3356788889999887 322221111112223345566677778999999999999999887544


Q ss_pred             hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc----------------cCCC-Chhhhh--hCCChHHHHH
Q 010064          207 LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS----------------ALDS-NKPIIG--SSGAVPFLVK  267 (519)
Q Consensus       207 ~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS----------------~~~~-~k~~I~--~~gai~~LV~  267 (519)
                      +.-..-.+...+..-+.-++++   +.++.-.++-.-.++.                ..++ ++....  -++.+|.|++
T Consensus       250 ~~m~~yM~~alfaitl~amks~---~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~  326 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSD---NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE  326 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence            4444444555667777778887   7777665532111121                1111 111111  2578899999


Q ss_pred             HhhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHH----HcCCHH--HHHHHHHHHHHhcCCcc--c
Q 010064          268 TLKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLE----MLGDME--LSERILSILSNLVSTPE--G  336 (519)
Q Consensus       268 lL~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~----lL~~~~--v~~~Al~~L~nLs~~~e--~  336 (519)
                      +|...+   ..++-..-..|-.+|.-++..       +....+++.+.    -+..++  -++.|..+++.+-..++  .
T Consensus       327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~  399 (859)
T KOG1241|consen  327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK  399 (859)
T ss_pred             HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence            887631   112223445555555544422       22233444443    445666  56788888888776444  3


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      .+.++.  ++++.++.++. ..+--+++.++|+|+.++..-++.+ ........++.|++=+. ..|++-..++|++-.|
T Consensus       400 Lt~iV~--qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~L  475 (859)
T KOG1241|consen  400 LTPIVI--QALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISL  475 (859)
T ss_pred             hhHHHh--hhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHH
Confidence            344554  69999999998 6677788999999999997655322 22333445555554444 4689999999999999


Q ss_pred             hhc
Q 010064          416 RVD  418 (519)
Q Consensus       416 ~~~  418 (519)
                      .+.
T Consensus       476 aea  478 (859)
T KOG1241|consen  476 AEA  478 (859)
T ss_pred             HHH
Confidence            964

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.49  E-value=0.003  Score=65.70  Aligned_cols=172  Identities=10%  Similarity=0.131  Sum_probs=131.8

Q ss_pred             hHHHHHhcCCHHHHHHhhcCCCHH--HHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          166 TRVTLAMLGAIPPLAGMLDFQLAD--SQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANF  243 (519)
Q Consensus       166 ~r~~l~~~G~i~~Lv~lL~s~~~~--~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL  243 (519)
                      ..+.+...|++..|+.|+..++.+  ++..|.+.|-.+.+  .+|+..++..| +..++.+-+...  .++.+...+++|
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e--~~e~aR~~~~il  246 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKERE--PVELARSVAGIL  246 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcC--cHHHHHHHHHHH
Confidence            445566789999999999998765  48999999999887  78888888877 444444433321  478888889999


Q ss_pred             HHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcCCHH--
Q 010064          244 LGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLGDME--  318 (519)
Q Consensus       244 ~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~~~~--  318 (519)
                      -++-.+.+ ....++..|++..++-.+..    .++.+...++-+|.|++.+..  .+..+++..+-.-|..+--+.+  
T Consensus       247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rR----t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel  322 (832)
T KOG3678|consen  247 EHMFKHSEETCQRLVAAGGLDAVLYWCRR----TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDEL  322 (832)
T ss_pred             HHHhhhhHHHHHHHHhhcccchheeeccc----CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHH
Confidence            99877654 47778899999999888877    789999999999999998754  6777888877777766653333  


Q ss_pred             HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064          319 LSERILSILSNLVSTPEGRKAISRVPDAF  347 (519)
Q Consensus       319 v~~~Al~~L~nLs~~~e~r~~i~~~~g~i  347 (519)
                      ++..||-+.+-|+.+.+.-..+.. .|.+
T Consensus       323 ~R~~AClAV~vlat~KE~E~~Vrk-S~Tl  350 (832)
T KOG3678|consen  323 LRLHACLAVAVLATNKEVEREVRK-SGTL  350 (832)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHhh-ccch
Confidence            778899999999987776666655 4433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.057  Score=61.37  Aligned_cols=144  Identities=20%  Similarity=0.203  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHhcCCC-ccHHHHH----hcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064          278 PQAKQDALRALYNLSIFP-SNISFIL----ETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPI  349 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~-~n~~~l~----~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~  349 (519)
                      ..-...++.+|.||.... +-...+-    -.|.++-+...|   +++.++.-|+.++.-++++.++-..++. .+.+..
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence            335667899999997654 4332222    236666666666   5677999999999999999999999998 689999


Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC--CCccc
Q 010064          350 LVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK--GKQVS  424 (519)
Q Consensus       350 Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~--~~~~~  424 (519)
                      |+.+|++  -|..++.+..+|+.|+..+.-.++++..-|.+..+--+....++..+..|+.+|+.|..|+  ++++.
T Consensus      1818 LL~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred             HHHHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee
Confidence            9999983  6889999999999999875444444444444444434445667889999999999999774  45543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.0036  Score=68.64  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=145.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH-----
Q 010064          135 KIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK-----  209 (519)
Q Consensus       135 ~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk-----  209 (519)
                      +...+.-.+++.+++..|..+|.++..-.-++-..-.....+..-+.-.+++++++...+...=.++|.  +++.     
T Consensus       220 qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice--EEiD~~~e~  297 (859)
T KOG1241|consen  220 QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE--EEIDLAIEY  297 (859)
T ss_pred             eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            334444456678888999999988775432222222223334444555678999999888888888874  3332     


Q ss_pred             HHHHh---------------cCcHHHHHHhhcCCCC-CCHH---HHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh
Q 010064          210 AAIVK---------------AGAVHKMLKLIESPVA-PNPS---VSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK  270 (519)
Q Consensus       210 ~~iv~---------------aG~v~~Lv~lL~s~~~-~~~~---~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~  270 (519)
                      ...++               .+++|.|+++|....+ ++.+   ...+|...|--++..  .+..|.. -++|++-.-++
T Consensus       298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~--~~D~Iv~-~Vl~Fiee~i~  374 (859)
T KOG1241|consen  298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC--VGDDIVP-HVLPFIEENIQ  374 (859)
T ss_pred             HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH--hcccchh-hhHHHHHHhcC
Confidence            11111               2678889998865321 1111   222222222222211  1111211 23444444444


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCc
Q 010064          271 NSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDA  346 (519)
Q Consensus       271 ~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~  346 (519)
                      +    .+-.-+..|+.++..+-.+++ .+..-+..+++|.++.++.|+.  +..-+.|+|+.++. .++.+....-....
T Consensus       375 ~----pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~  450 (859)
T KOG1241|consen  375 N----PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK  450 (859)
T ss_pred             C----cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence            4    688889999999999998887 5666667899999999999876  66789999999987 44433322222456


Q ss_pred             chhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          347 FPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      ++.+++-|+  +.|.+..++||++.+|+..
T Consensus       451 l~~l~~gL~--DePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  451 LSALLEGLN--DEPRVASNVCWAFISLAEA  478 (859)
T ss_pred             HHHHHHHhh--hCchHHHHHHHHHHHHHHH
Confidence            777777777  4799999999999999943

>TIGR02270 conserved hypothetical protein

Probab=97.41  E-value=0.013  Score=61.92  Aligned_cols=188  Identities=16%  Similarity=0.085  Sum_probs=118.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..|++.|...+..++..++..|..+-.           .++.+.|+.+|++.++.++..++.++...-           
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence            6778888877777788777777754331           224567777777777777777766665521           


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                       ....+.|..+|+++   ++.++..|+.+|-.+-          ...+++.|...+..    .++.++..|+.+|..+-.
T Consensus       146 -~~~~~~L~~~L~d~---d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d----~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       146 -HDPGPALEAALTHE---DALVRAAALRALGELP----------RRLSESTLRLYLRD----SDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             -cChHHHHHHHhcCC---CHHHHHHHHHHHHhhc----------cccchHHHHHHHcC----CCHHHHHHHHHHHHHcCC
Confidence             12345677777766   6777777777766553          23355666666665    577777777777765533


Q ss_pred             CCccHHHHHh----------------------cCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhh
Q 010064          294 FPSNISFILE----------------------TDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILV  351 (519)
Q Consensus       294 ~~~n~~~l~~----------------------~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv  351 (519)
                       +.....+..                      ..++..|..++.++.++..++.+|+.+-          + ...++.|+
T Consensus       208 -~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~vr~~a~~AlG~lg----------~-p~av~~L~  275 (410)
T TIGR02270       208 -RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAATRREALRAVGLVG----------D-VEAAPWCL  275 (410)
T ss_pred             -HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChhhHHHHHHHHHHcC----------C-cchHHHHH
Confidence             111111110                      1344555555555556666666665432          2 56888999


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          352 DVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       352 ~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      +.+..   +.+...|-+++..++--
T Consensus       276 ~~l~d---~~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       276 EAMRE---PPWARLAGEAFSLITGM  297 (410)
T ss_pred             HHhcC---cHHHHHHHHHHHHhhCC
Confidence            99872   45888999999988853

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.36  E-value=0.021  Score=59.70  Aligned_cols=252  Identities=16%  Similarity=0.103  Sum_probs=164.4

Q ss_pred             HHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHH
Q 010064          155 KVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPS  234 (519)
Q Consensus       155 ~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~  234 (519)
                      .|..|.+..+..+..+.-.-..+.+..++-+++.+++..+.++++.+..+ +..-..+.+.++--.++..|..+.. +..
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~-~~~   83 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNK-NDV   83 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCC-ChH
Confidence            34445555666665554444455555556566699999999999999994 8888888888876666777765532 334


Q ss_pred             HHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064          235 VSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML  314 (519)
Q Consensus       235 ~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL  314 (519)
                      -+++|...+..+-........ ...|.+..+|.+...    .+...+..|+.+|..|+..+.  ..+..+|+++.|+..+
T Consensus        84 ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~----~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l  156 (371)
T PF14664_consen   84 EREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEH----EDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRAL  156 (371)
T ss_pred             HHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhC----CchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHH
Confidence            467787666555443322222 356788999999887    688899999999999987542  3456789999999988


Q ss_pred             CCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC------CCH--HHHHHHHHHHHHHhcCChhhHHHH
Q 010064          315 GDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT------DSP--GCQEKASYVLMVMAHKSYGDRQAM  384 (519)
Q Consensus       315 ~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s------~~~--~~qe~A~~~L~nL~~~~~~~~~~i  384 (519)
                      .++  ++.+..+.++..|-.+|..|+-+.. .--+..++.-....      ++.  +.-..+..++..+-..=++..-.-
T Consensus       157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~  235 (371)
T PF14664_consen  157 IDGSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS  235 (371)
T ss_pred             HhccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence            653  4888999999999999999986654 22233333322211      122  123334444444433212211111


Q ss_pred             H-HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          385 I-EAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       385 ~-~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      . ...++..|++.+..+++.+++....++--+-
T Consensus       236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            1 1247888999999999999888666665544

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.35  E-value=0.00079  Score=54.71  Aligned_cols=87  Identities=24%  Similarity=0.326  Sum_probs=71.5

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064          176 IPPLAGML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP  254 (519)
Q Consensus       176 i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~  254 (519)
                      ||.|++.| +++++.++..++++|.++..  +         .+++.|+.+++++   ++.++..++.+|..+.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~---~~~vr~~a~~aL~~i~-------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDE---DPMVRRAAARALGRIG-------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSS---SHHHHHHHHHHHHCCH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCC---CHHHHHHHHHHHHHhC-------
Confidence            68899999 78999999999999995532  1         3589999999887   8999999999988772       


Q ss_pred             hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                         ...+++.|++++.+.   .+..++..|+.+|.
T Consensus        60 ---~~~~~~~L~~~l~~~---~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQDD---DDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHHTHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcCC---CcHHHHHHHHhhcC
Confidence               455899999999884   56777898988874

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.33  E-value=0.00056  Score=47.10  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=36.2

Q ss_pred             hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064          165 ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI  203 (519)
Q Consensus       165 ~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~  203 (519)
                      +++..+.+.|++++|+.+|.+++++++..++++|.||+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            578889999999999999999999999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.0014  Score=69.29  Aligned_cols=195  Identities=11%  Similarity=0.081  Sum_probs=140.0

Q ss_pred             HHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhc
Q 010064          193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKN  271 (519)
Q Consensus       193 ~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~  271 (519)
                      +++..|..++..-.--|.-+.+..++++|+++|.++   +.-+..-+...++|+..-= +.+..+...|.|..|+.++.+
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P---eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP---EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc---cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            344455555543222366677788999999999987   5666667778888876543 447888899999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcc----cHHHHh--
Q 010064          272 SDKKVSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPE----GRKAIS--  341 (519)
Q Consensus       272 ~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e----~r~~i~--  341 (519)
                          .+...+.+..|.|+.+.-+++  .+..++..-++..++.+..|+.  +++.++.+|.|+..+..    .+....  
T Consensus       485 ----KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~  560 (743)
T COG5369         485 ----KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKA  560 (743)
T ss_pred             ----chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEec
Confidence                677899999999999987765  3455677888999999999886  89999999999987322    121111  


Q ss_pred             -hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCcHHHHHH
Q 010064          342 -RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE-AGIASALLE  395 (519)
Q Consensus       342 -~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~-~G~i~~Ll~  395 (519)
                       ...-....|++.+. ..+|...+..+++|.++++.+...++.+.+ ...+..+-+
T Consensus       561 ~p~~ylfk~l~~k~e-~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~e  615 (743)
T COG5369         561 TPRRYLFKRLIDKYE-ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFE  615 (743)
T ss_pred             ChHHHHHHHHHHHHH-hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHH
Confidence             11124456677777 567877777899999999886666666653 344443333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.24  E-value=0.0013  Score=53.50  Aligned_cols=86  Identities=23%  Similarity=0.298  Sum_probs=68.0

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      ++.|++.| +++++.+|..|+..|..+-..           .+++.|+++++++++.++..++++|..+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP-----------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH-----------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            56788988 788999999999998844311           25899999999999999999999999873          


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANF  243 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL  243 (519)
                       ...+++.|.+++.++.  +..++..|+.+|
T Consensus        60 -~~~~~~~L~~~l~~~~--~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDD--DEVVREAAAEAL   87 (88)
T ss_dssp             -HHHTHHHHHHHHTC-S--SHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCC--cHHHHHHHHhhc
Confidence             2238899999998862  456678777765

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.23  E-value=0.041  Score=56.55  Aligned_cols=214  Identities=24%  Similarity=0.231  Sum_probs=145.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..+++.+.+.+...+..|+..+..+...           -+++.|..+|.+.+..++..++.+|+++-..        
T Consensus        44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~--------  104 (335)
T COG1413          44 AADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP--------  104 (335)
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh--------
Confidence            477888888888888999888885444422           2689999999999999999999988887653        


Q ss_pred             HhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCC--------CCCHHHHHH
Q 010064          213 VKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDK--------KVSPQAKQD  283 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~--------~~~~~~~~~  283 (519)
                         -.++.|+.++.. +   +..++..++.+|..+-..          .++..|+..+.....        ......+..
T Consensus       105 ---~a~~~li~~l~~d~---~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 ---EAVPPLVELLENDE---NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             ---hHHHHHHHHHHcCC---cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence               367999999985 5   789999998888877532          237777777766200        000123444


Q ss_pred             HHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH
Q 010064          284 ALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG  361 (519)
Q Consensus       284 A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~  361 (519)
                      ++.+|..+-          +...++.|...+.+..  ++..|..+|..+....         ......+...+. ..+..
T Consensus       169 a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~-~~~~~  228 (335)
T COG1413         169 AAEALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALS-DESLE  228 (335)
T ss_pred             HHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhc-CCCHH
Confidence            444444332          2346677788886554  8889998888877643         134567777777 67788


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          362 CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       362 ~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      ++..++..|..+-...           .++.+...+...+...+..+..++
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~  268 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAAL  268 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHh
Confidence            8888887777665432           345555555555555554444444

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.18  E-value=0.0022  Score=54.10  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhc
Q 010064          149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIGNDLNKAAIVKA  215 (519)
Q Consensus       149 ~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a  215 (519)
                      |...++.|.+|+..+..+...+.+.|+||.++...  +..+|-+++-|.+++.||+.+|++|+..|.+-
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            56778999999999999999999999999999876  45789999999999999999999999888753

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.021  Score=61.73  Aligned_cols=274  Identities=18%  Similarity=0.113  Sum_probs=169.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHH-HHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS-SLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~-a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+.+.+.+.......+..|+..+..+.++.  .-..+.+.+.+..|...+.......... ++.+.-....    +--..
T Consensus       136 l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~----~Lg~~  209 (569)
T KOG1242|consen  136 LELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG----NLGPP  209 (569)
T ss_pred             HHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH----hcCCC
Confidence            667777778778888899999999888664  4555667888999988887744433332 2222211111    11134


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ++.+++|.|..++.+-++....+++++..+...+- ..+..    +-.-.+|.++.-+..    ..-+.+..++..|..+
T Consensus       210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~----aVK~llpsll~~l~~----~kWrtK~aslellg~m  281 (569)
T KOG1242|consen  210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY----AVKLLLPSLLGSLLE----AKWRTKMASLELLGAM  281 (569)
T ss_pred             CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc----hhhHhhhhhHHHHHH----HhhhhHHHHHHHHHHH
Confidence            45667777766665432225677776655444322 11111    112245555555544    3567788899999988


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHH--HHh--------h-----------------
Q 010064          292 SIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRK--AIS--------R-----------------  342 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~--~i~--------~-----------------  342 (519)
                      +...+-.-...-..+||.|...|.|  +++++.+..+|.++++.-++..  .++        +                 
T Consensus       282 ~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttF  361 (569)
T KOG1242|consen  282 ADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTF  361 (569)
T ss_pred             HHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceee
Confidence            8777666666777899999999965  4588888888888877322222  110        0                 


Q ss_pred             ----cCCcchhhhhhccC---CCCHHHHHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064          343 ----VPDAFPILVDVLNW---TDSPGCQEKASYVLMVMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILE  413 (519)
Q Consensus       343 ----~~g~i~~Lv~lL~~---s~~~~~qe~A~~~L~nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~  413 (519)
                          ++-.+..++.+|+.   ..+..+.+.++.++.|||.--++ .+.+.  =.-.+|.|-..+.+..|.+|.-+.++|.
T Consensus       362 V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD-p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  362 VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED-PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC-HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence                01123333444431   12345567889999999975322 22221  2346788888888889999999999997


Q ss_pred             HhhhcCCCc
Q 010064          414 CLRVDKGKQ  422 (519)
Q Consensus       414 ~l~~~~~~~  422 (519)
                      -+.++.+.+
T Consensus       441 ~l~e~~g~~  449 (569)
T KOG1242|consen  441 ALLERLGEV  449 (569)
T ss_pred             HHHHHHHhh
Confidence            666554433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.15  E-value=0.055  Score=57.97  Aligned_cols=93  Identities=17%  Similarity=0.107  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC
Q 010064          149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP  228 (519)
Q Consensus       149 ~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~  228 (519)
                      ...-++.+..|.+.+++.+.++     .|.|-..|++.-+.++..++++++.++..+  .-..++++ .|..|-.+|+++
T Consensus       244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~  315 (898)
T COG5240         244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKST  315 (898)
T ss_pred             heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcc
Confidence            3445566666777777776655     355666777777889999999999988653  12223332 678888889998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCC
Q 010064          229 VAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       229 ~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                         ....+-.|..+|-.|+...+-
T Consensus       316 ---rv~~rFsA~Riln~lam~~P~  336 (898)
T COG5240         316 ---RVVLRFSAMRILNQLAMKYPQ  336 (898)
T ss_pred             ---hHHHHHHHHHHHHHHHhhCCc
Confidence               788999999999999866443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.12  E-value=0.0053  Score=59.51  Aligned_cols=179  Identities=20%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhccC--hhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc
Q 010064          142 QSESEEQRREAASKVRSLAKEN--SETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA  217 (519)
Q Consensus       142 ~s~~~~~~~~Aa~~L~~La~~~--~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~  217 (519)
                      .+.+++.|.+|+..|+.+...+  ......+..  ..++..++..+.+....+...|+.++..|+......-... -...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            5678999999999999988776  233333322  2566777777777777788999999999997533332223 2347


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-
Q 010064          218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-  296 (519)
Q Consensus       218 v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-  296 (519)
                      +|.|++.+.++   +..+++.|..+|..+...-.....+    .++.+...+.+    .++.++..++..|..+...-. 
T Consensus        96 l~~Ll~~~~~~---~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~----Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   96 LPPLLKKLGDS---KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKS----KNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             HHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-----S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHccc---cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHccc
Confidence            89999999988   7888999988898887653311111    14555555555    799999999999998875433 


Q ss_pred             cHHHHHh----cCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064          297 NISFILE----TDLIRYLLEMLGD--MELSERILSILSNLVS  332 (519)
Q Consensus       297 n~~~l~~----~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~  332 (519)
                      ....+-.    ...++.+...+.|  +++++.|-.++..+..
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            1111111    3456667777765  4588888888888865

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.01  E-value=0.021  Score=64.80  Aligned_cols=201  Identities=19%  Similarity=0.181  Sum_probs=142.3

Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFL-GLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~-~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                      ..-+..|+.|..+++|+++   -.+++...+-+-. -|+.++.++..++..++-...++.|... +.-+++-+.-|+-.|
T Consensus       506 ~LaLsVGIFPYVLKLLQS~---a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~-~~~~~EqrtmaAFVL  581 (1387)
T KOG1517|consen  506 DLALSVGIFPYVLKLLQSS---ARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS-QAIPPEQRTMAAFVL  581 (1387)
T ss_pred             hhhhccchHHHHHHHhccc---hHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc-CCCCHHHHHHHHHHH
Confidence            3455679999999999998   5676664443322 3677777777777654444444444431 124567788899999


Q ss_pred             HHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--H-HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064          289 YNLSIFPS-NISFILETDLIRYLLEMLGDM--E-LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQ  363 (519)
Q Consensus       289 ~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~-v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q  363 (519)
                      .-+..+=. .+...++.+.+...+..|.++  . ++.=++-+|+.|=. +++.|..=.+ .++...|..+|. ..-|+++
T Consensus       582 Aviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~Ls-D~vpEVR  659 (1387)
T KOG1517|consen  582 AVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLS-DPVPEVR  659 (1387)
T ss_pred             HHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhc-CccHHHH
Confidence            99987643 666677888999888899774  3 56667778888877 5666655555 688899999998 5789999


Q ss_pred             HHHHHHHHHHhcCC----hhh---HHH--------HHHcCcHH----HHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          364 EKASYVLMVMAHKS----YGD---RQA--------MIEAGIAS----ALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       364 e~A~~~L~nL~~~~----~~~---~~~--------i~~~G~i~----~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .+|+++|..+....    ++.   ++.        +.-+..++    .|+.++.++++.+++....+|..+.
T Consensus       660 aAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~  731 (1387)
T KOG1517|consen  660 AAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV  731 (1387)
T ss_pred             HHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999988742    221   111        11233333    6788888999999999999998876

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.01  E-value=0.04  Score=56.62  Aligned_cols=187  Identities=26%  Similarity=0.281  Sum_probs=139.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK  253 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k  253 (519)
                      ..++.+++++.+.+..++..+++.|..+...           -+++.|..++.+.   +..++..++.+|..+       
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~---~~~vr~~a~~aLg~~-------  101 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDE---DPRVRDAAADALGEL-------  101 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCC---CHHHHHHHHHHHHcc-------
Confidence            4788999999999999999999997765542           3789999999998   888888887754443       


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--------------H
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--------------L  319 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--------------v  319 (519)
                         ....+++.|+.++...   .+..++..|+++|..+-..          .++.+|+..+.+..              +
T Consensus       102 ---~~~~a~~~li~~l~~d---~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~  165 (335)
T COG1413         102 ---GDPEAVPPLVELLEND---ENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDV  165 (335)
T ss_pred             ---CChhHHHHHHHHHHcC---CcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHH
Confidence               2345789999999853   7899999999999987533          33677777776544              2


Q ss_pred             HHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064          320 SERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL  399 (519)
Q Consensus       320 ~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~  399 (519)
                      +..+...|..+          .+ ...++.+.+.+. .....++..|+..|..+...+         ..+.+.+...+.+
T Consensus       166 r~~a~~~l~~~----------~~-~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~  224 (335)
T COG1413         166 RAAAAEALGEL----------GD-PEAIPLLIELLE-DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSD  224 (335)
T ss_pred             HHHHHHHHHHc----------CC-hhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence            22233333221          22 567788888888 566789999999999888764         3356788888889


Q ss_pred             CCHHHHHHHHHHHHHhhhc
Q 010064          400 GSTLAQKRASRILECLRVD  418 (519)
Q Consensus       400 gs~~~~~~A~~~L~~l~~~  418 (519)
                      .+..++.++..+|..+...
T Consensus       225 ~~~~vr~~~~~~l~~~~~~  243 (335)
T COG1413         225 ESLEVRKAALLALGEIGDE  243 (335)
T ss_pred             CCHHHHHHHHHHhcccCcc
Confidence            9999999888888776543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.04  Score=59.03  Aligned_cols=251  Identities=16%  Similarity=0.122  Sum_probs=152.2

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-------hHHHH
Q 010064          140 DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-------NKAAI  212 (519)
Q Consensus       140 ~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-------nk~~i  212 (519)
                      .|++.-..++.++++.+..++..+ -.-+.+  ..+|..|-.+|.+.....|..|.++|-.|+...+.       +-+.+
T Consensus       272 wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL  348 (898)
T COG5240         272 WLSDKFEMVFLEAARAVCALSEEN-VGSQFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL  348 (898)
T ss_pred             HhcCcchhhhHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH
Confidence            344445678899999999988665 112222  12567777888899999999999999999954221       11111


Q ss_pred             H-hcC---cHHHHHHhhcCCCCCCHHHHH-------------------HHHHHHHHhccCCCChhhhhhCCChHHHHHHh
Q 010064          213 V-KAG---AVHKMLKLIESPVAPNPSVSE-------------------AIVANFLGLSALDSNKPIIGSSGAVPFLVKTL  269 (519)
Q Consensus       213 v-~aG---~v~~Lv~lL~s~~~~~~~~~~-------------------~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL  269 (519)
                      + +.+   ..-++-.+|+.+   ..+...                   .++-++.+|+..=+.+.    ...+.+|...|
T Consensus       349 Isd~Nr~IstyAITtLLKTG---t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~----~s~l~FL~~~L  421 (898)
T COG5240         349 ISDENRTISTYAITTLLKTG---TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK----LSYLDFLGSSL  421 (898)
T ss_pred             hhcccccchHHHHHHHHHcC---chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH----HHHHHHHHHHH
Confidence            1 111   112223344444   222221                   22333333333222111    22467777777


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcc
Q 010064          270 KNSDKKVSPQAKQDALRALYNLSIFP-SNISFILETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRKAISRVPDAF  347 (519)
Q Consensus       270 ~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i  347 (519)
                      .+.   +..+.+..++.++..+..+. +.+..     ++..|+..+.|++.-+-++.+|.-|-. .|....   - ...+
T Consensus       422 ~~e---Gg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~---P-~~yv  489 (898)
T COG5240         422 LQE---GGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEYHQITVRILGILGREGPRAKT---P-GKYV  489 (898)
T ss_pred             Hhc---ccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC---c-chHH
Confidence            664   78888888888888776654 33333     567788888888877777777777765 232211   0 1222


Q ss_pred             hhhhh-hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          348 PILVD-VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       348 ~~Lv~-lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..+.. ++-  .+..++..|+.+|.-.+..-.+   .+...-+...|.+.+.+.+..++.+|..+|.+++.
T Consensus       490 rhIyNR~iL--EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         490 RHIYNRLIL--ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHHHHHHHH--hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            33332 222  3577888999999776654221   22233455677888889999999999999999994

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.96  E-value=0.056  Score=60.90  Aligned_cols=275  Identities=13%  Similarity=0.089  Sum_probs=155.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064          136 IVVKDLQSESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK  214 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~  214 (519)
                      .|++.+.+.+.+.|.-|..-|.. |-++. ..-+.=-+..++..|+++|+..+.++|..|.++|+-|+..-.+.+.   +
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~l---e   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQL---E   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHH---H
Confidence            77888888888888777755544 33321 1000001234688999999999999999999999999854222221   2


Q ss_pred             cCcHHHHHHhhcCCCCCCHHHHHHH-HHHHHHhccCCCChhhhhhCCC----hHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          215 AGAVHKMLKLIESPVAPNPSVSEAI-VANFLGLSALDSNKPIIGSSGA----VPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       215 aG~v~~Lv~lL~s~~~~~~~~~~~a-~~aL~~LS~~~~~k~~I~~~ga----i~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                      . .+..|..-+-++   ....+... ++...-.+..++.-.......+    .|.|++.+...  +....++..++..|.
T Consensus        85 ~-~ve~L~~~~~s~---keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~q--e~~sai~~e~lDil~  158 (1233)
T KOG1824|consen   85 T-IVENLCSNMLSG---KEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQ--EDVSAIKCEVLDILA  158 (1233)
T ss_pred             H-HHHHHhhhhccc---hhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHH
Confidence            1 455555543343   23333322 2222222222221111122222    44444444331  234447777777765


Q ss_pred             HhcCC-CccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHH
Q 010064          290 NLSIF-PSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKA  366 (519)
Q Consensus       290 nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A  366 (519)
                      -+-.. .+-... ...+.+..++.-|..+.  ++.+|+.+|++|+..- ++.....   .+..|+.=|..+..+....--
T Consensus       159 d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~~---li~~Ll~~L~~~~q~~~~rt~  233 (1233)
T KOG1824|consen  159 DVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYVE---LIEHLLKGLSNRTQMSATRTY  233 (1233)
T ss_pred             HHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHHH---HHHHHHhccCCCCchHHHHHH
Confidence            54322 111111 23344455555555554  8999999999999832 2222222   444566655534444444455


Q ss_pred             HHHHHHHhcCChhhHHHHHHcCcHHHHHHHh---hcCCHHHHHHHHHHHHHhhhcCCCccccc
Q 010064          367 SYVLMVMAHKSYGDRQAMIEAGIASALLELT---LLGSTLAQKRASRILECLRVDKGKQVSGT  426 (519)
Q Consensus       367 ~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll---~~gs~~~~~~A~~~L~~l~~~~~~~~~~~  426 (519)
                      ..+|..+|.. .++|---.-..++|.+.+..   ...+.+.++....+|..|-..-+..+.++
T Consensus       234 Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~  295 (1233)
T KOG1824|consen  234 IQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPH  295 (1233)
T ss_pred             HHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhccc
Confidence            6667777764 23333333456789999998   67788999999999998886555555554

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.88  E-value=0.0025  Score=43.73  Aligned_cols=39  Identities=28%  Similarity=0.409  Sum_probs=36.0

Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          206 DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      ++++..+++.|+++.|+.+++++   +..++..++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~---~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSE---DEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHc
Confidence            45899999999999999999987   8999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.85  E-value=0.074  Score=58.54  Aligned_cols=261  Identities=19%  Similarity=0.164  Sum_probs=161.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETR---VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r---~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .+..++..|++....++..|+..+..|+.-- ..+   ..+...|+|  |.+.|..+++++.-..+.||..+... -...
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nv-igm~  875 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNV-IGMT  875 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHh-cccc
Confidence            3556677788899999999999999888542 222   234445554  67999999999876666666655532 1111


Q ss_pred             HHHH-hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC----hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          210 AAIV-KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN----KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       210 ~~iv-~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~----k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                      +..- -.|++|.|.-+|++.   +..++++++..+-.++...+-    |+-+   -.---|+.+|.+    .+..+++.|
T Consensus       876 km~pPi~dllPrltPILknr---heKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLka----hkK~iRRaa  945 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILKNR---HEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKA----HKKEIRRAA  945 (1172)
T ss_pred             ccCCChhhhcccchHhhhhh---HHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHH----HHHHHHHHH
Confidence            1111 237899999999998   899999998887777755332    2211   122346677776    578888888


Q ss_pred             HHHHHHhcC--CCccHHH----------------------HH-hc-CcHHHHHHHcC---CHH--HHHHHHHHHHHhcC-
Q 010064          285 LRALYNLSI--FPSNISF----------------------IL-ET-DLIRYLLEMLG---DME--LSERILSILSNLVS-  332 (519)
Q Consensus       285 ~~aL~nLs~--~~~n~~~----------------------l~-~~-g~v~~Lv~lL~---~~~--v~~~Al~~L~nLs~-  332 (519)
                      ..++..++.  ++.....                      ++ +. |.+..|=.++.   .++  ++.-.+.+|+.+-. 
T Consensus       946 ~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fey 1025 (1172)
T KOG0213|consen  946 VNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEY 1025 (1172)
T ss_pred             HhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHH
Confidence            888888764  2221111                      11 11 22222223332   233  77778888888776 


Q ss_pred             -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-------cCCHHH
Q 010064          333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-------LGSTLA  404 (519)
Q Consensus       333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-------~gs~~~  404 (519)
                       ....++-|-.   ..|.|.+.|. ..++.-+..|+.++..|+.+.++       .|....++.|+.       ..+|.+
T Consensus      1026 igemskdYiya---v~PlleDAlm-DrD~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iWpNIle~sPhv 1094 (1172)
T KOG0213|consen 1026 IGEMSKDYIYA---VTPLLEDALM-DRDLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIWPNILETSPHV 1094 (1172)
T ss_pred             HHHHhhhHHHH---hhHHHHHhhc-cccHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhhhhhcCCChHH
Confidence             3444444444   5666777676 45666777788888877776443       344444444443       467777


Q ss_pred             HHHHHHHHHHhhhc
Q 010064          405 QKRASRILECLRVD  418 (519)
Q Consensus       405 ~~~A~~~L~~l~~~  418 (519)
                      +......+.-|+..
T Consensus      1095 iqa~~e~~eg~r~~ 1108 (1172)
T KOG0213|consen 1095 IQAFDEAMEGLRVA 1108 (1172)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777766666643

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.80  E-value=0.023  Score=51.82  Aligned_cols=131  Identities=16%  Similarity=0.158  Sum_probs=99.7

Q ss_pred             hhhhhCCChHHHHHHhhcCCC--CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC----CHHHHHHHHHHH
Q 010064          254 PIIGSSGAVPFLVKTLKNSDK--KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG----DMELSERILSIL  327 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~--~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~----~~~v~~~Al~~L  327 (519)
                      ..+++.+++..|++++.++..  .........++.++..|..+.-.-+..++...|...+..+.    |..+...|+.+|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            346678899999999998510  01257788899999999988766667788888888888874    455899999999


Q ss_pred             HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHH
Q 010064          328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMI  385 (519)
Q Consensus       328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~  385 (519)
                      .+++.+....-..+..+=-++.|+..|+ ..++.+|..|...+..|..+.++ .|+.+.
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq-~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQ-VSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            9999965554444443667899999999 47899999999999999877444 344443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.082  Score=56.61  Aligned_cols=268  Identities=14%  Similarity=0.108  Sum_probs=164.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      ++.|-..++.-++..|..-+.-|..|-..  .-...+.= ...++.|+.||..++.+++..+-.+|.++-.. -+++-..
T Consensus       169 ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s  245 (675)
T KOG0212|consen  169 IPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSS  245 (675)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccc
Confidence            44444444555677777766666665422  22222211 34678889999999999998887777776542 2232233


Q ss_pred             Hhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH---HH
Q 010064          213 VKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR---AL  288 (519)
Q Consensus       213 v~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~---aL  288 (519)
                      ++. ..++.++..++++   ++.++..|+--+.............--+|.+..++..+.+.   ....++..+..   .|
T Consensus       246 ~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~---e~~~i~~~a~~~n~~l  319 (675)
T KOG0212|consen  246 MDYDDMINVLVPHLQSS---EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT---EEMSIKEYAQMVNGLL  319 (675)
T ss_pred             cCcccchhhccccccCC---cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC---ccccHHHHHHHHHHHH
Confidence            232 4789999999998   88888777544444444333322223366666666666652   12122322222   22


Q ss_pred             HHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064          289 YNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK  365 (519)
Q Consensus       289 ~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~  365 (519)
                      .-+.....-... ++- ..+..|...+.+.  +.+-.++..+..|-....+.-.... ...++.|+.-|. ..+..+...
T Consensus       320 ~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLs-d~sd~vvl~  396 (675)
T KOG0212|consen  320 LKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLS-DRSDEVVLL  396 (675)
T ss_pred             HHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhc-CchhHHHHH
Confidence            333322221111 222 3455666666543  4777888888888764444444444 578889999998 567889999


Q ss_pred             HHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       366 A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +..++.++|.++... ..   -..+..|++++...+.-...|+.-+++.|+.
T Consensus       397 ~L~lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  397 ALSLLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHHHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence            999999999874431 00   1245567777788888899999999999884

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.035  Score=59.35  Aligned_cols=194  Identities=17%  Similarity=0.146  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKE---NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~---~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .+.-|..+|+.++.+++..+=.+|.++..+   ++..   +--...++.++.-+.++.+.+|..|+.-+.....- ....
T Consensus       209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~g~~  284 (675)
T KOG0212|consen  209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-PGRD  284 (675)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-CCcc
Confidence            356677788888888876555544443322   2221   11245789999999999999999998888887763 4444


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHH---HHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAI---VANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a---~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      -...-.|++..++.++.+..  ...+.+.+   -..|..+...+..+..|--...+..|.+.+..    +..+++..++.
T Consensus       285 ~l~~~s~il~~iLpc~s~~e--~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~  358 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTE--EMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLN  358 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCc--cccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHH
Confidence            44445688888888888762  12344433   23345555544444433223456777777777    78899999998


Q ss_pred             HHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCccc
Q 010064          287 ALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEG  336 (519)
Q Consensus       287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~  336 (519)
                      -+..|-....+.-..-.....+.|+.-|.|.  ++...++..|.+++.+++.
T Consensus       359 Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  359 WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            8888877766666666678889999999654  4999999999999986554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.64  E-value=0.011  Score=57.35  Aligned_cols=176  Identities=16%  Similarity=0.145  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHhccCC---CChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCc
Q 010064          232 NPSVSEAIVANFLGLSALD---SNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDL  306 (519)
Q Consensus       232 ~~~~~~~a~~aL~~LS~~~---~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~  306 (519)
                      +-+.+..++-.|..+....   .....+.+  ...+..++..+.+    ....+...|+.+|..|+..-.....-.-...
T Consensus        20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d----~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~   95 (228)
T PF12348_consen   20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD----LRSKVSKTACQLLSDLARQLGSHFEPYADIL   95 (228)
T ss_dssp             SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H----H---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence            5666777766666654332   33333332  2555666776666    4777899999999999865443222224567


Q ss_pred             HHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCc-chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 010064          307 IRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDA-FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQA  383 (519)
Q Consensus       307 v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~-i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~  383 (519)
                      +|.|+..+++..  +.+.|..+|..+...-..-.      .. +..+...+. +.++.++..++..+..+....+.....
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP------KILLEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            889999987764  88899999998887433111      12 335555666 689999999998888887653311111


Q ss_pred             H----HHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          384 M----IEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       384 i----~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      +    .-..+++.+...+.++++.+|+.|..++..+...
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            1    1245788999999999999999999999999754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.59  E-value=0.57  Score=52.35  Aligned_cols=59  Identities=12%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG  202 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa  202 (519)
                      +.+.|++.|.-++..|+.+|.+++... -.|+      +.|-+.++|++.++-++..|+.++..+-
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~E-mard------lapeVe~Ll~~~~~~irKKA~Lca~r~i  170 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPE-MARD------LAPEVERLLQHRDPYIRKKAALCAVRFI  170 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHH-HhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            333444555555555555555554221 2222      2334444455555555555544444443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.57  E-value=0.11  Score=56.18  Aligned_cols=221  Identities=17%  Similarity=0.173  Sum_probs=142.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..++..+.......|.....+|..+..... ...   ..-+.+-+.+++...+...+..+++.+.-+..+  ..-..+
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~-~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSK-GLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhh-ccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhh
Confidence            36666777777778888888888776553321 111   122466778888888888899999999988874  334566


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHH-HH----HHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEA-IV----ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA  287 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~-a~----~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a  287 (519)
                      .+.+.+..|.+.+++.   ....... +.    ....+|.       ...+...++.+..+|.+. ......++..|..+
T Consensus       171 ~~~~~l~~l~~ai~dk---~~~~~re~~~~a~~~~~~~Lg-------~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a  239 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDK---KSALNREAALLAFEAAQGNLG-------PPFEPYIVPILPSILTNF-GDKINKVREAAVEA  239 (569)
T ss_pred             hhhhHHHHHHHHhccc---chhhcHHHHHHHHHHHHHhcC-------CCCCchHHhhHHHHHHHh-hccchhhhHHHHHH
Confidence            6778999999999887   3333332 21    1222333       113456677777777653 12456677777766


Q ss_pred             HHHhcCCC-ccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHH
Q 010064          288 LYNLSIFP-SNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQE  364 (519)
Q Consensus       288 L~nLs~~~-~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe  364 (519)
                      ..-+...- ....+    -.+++++.-+.+..  ....++..|+.|+......-...- +..+|.|.+.|. ...+++++
T Consensus       240 ~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~-DT~~evr~  313 (569)
T KOG1242|consen  240 AKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLW-DTKPEVRK  313 (569)
T ss_pred             HHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHc-cCCHHHHH
Confidence            65553221 11111    12344444343344  455788899988875555555555 679999999998 56899999


Q ss_pred             HHHHHHHHHhcC
Q 010064          365 KASYVLMVMAHK  376 (519)
Q Consensus       365 ~A~~~L~nL~~~  376 (519)
                      .+..++..++.-
T Consensus       314 a~~~~l~~~~sv  325 (569)
T KOG1242|consen  314 AGIETLLKFGSV  325 (569)
T ss_pred             HHHHHHHHHHHh
Confidence            999999888763

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.47  E-value=0.039  Score=55.21  Aligned_cols=230  Identities=13%  Similarity=0.056  Sum_probs=149.1

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-  258 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-  258 (519)
                      .++++=++-.+..|..+|.|+... .+.|..+-. ...-..+++.+++.-. ...++-..+-++|.|+.++.....|-. 
T Consensus       156 kl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg-~~qlQY~SL~~iw~lTf~~~~aqdi~K~  233 (432)
T COG5231         156 KLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVG-VKQLQYNSLIIIWILTFSKECAQDIDKM  233 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344444555788899999999995 666555544 4455677888877522 356677788888999988776544433 


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCcHHHHHHHc-----CCHHHHH---HHHHHHH
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP--SNISFILETDLIRYLLEML-----GDMELSE---RILSILS  328 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~--~n~~~l~~~g~v~~Lv~lL-----~~~~v~~---~Al~~L~  328 (519)
                      ...+..|+++.+..   ...++.+-++.++.|++...  ..+..++--|-+.+-+++|     .|.+++.   ..-..|.
T Consensus       234 ~dli~dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         234 DDLINDLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            46788889998875   66788889999999998733  3454444445444455555     2333221   1111111


Q ss_pred             ----HhcCCcccHHHHh-------------------------hcCCcchhhhhhccCCCCHH-HHHHHHHHHHHHhcCCh
Q 010064          329 ----NLVSTPEGRKAIS-------------------------RVPDAFPILVDVLNWTDSPG-CQEKASYVLMVMAHKSY  378 (519)
Q Consensus       329 ----nLs~~~e~r~~i~-------------------------~~~g~i~~Lv~lL~~s~~~~-~qe~A~~~L~nL~~~~~  378 (519)
                          .|+..++...++-                         +.-..+..|.++|+ ..++. ....||.-+..+....|
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~P  389 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASP  389 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCc
Confidence                1222222222111                         11123455666666 33333 33446666777777778


Q ss_pred             hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          379 GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       379 ~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +.+..+..-|+=..+++|+.+++++++-.|..+++.+-
T Consensus       390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            88888999999999999999999999999999998764

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.45  E-value=0.012  Score=49.63  Aligned_cols=66  Identities=12%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 010064          320 SERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIE  386 (519)
Q Consensus       320 ~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~  386 (519)
                      +...+.+|+||+. ++..+..+.. .|+++.++..-. ...+|.+++.|.+++.|||.+++++++.+.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4567889999998 7788888888 688999888653 2468999999999999999999998887764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.13  Score=58.64  Aligned_cols=201  Identities=13%  Similarity=0.098  Sum_probs=140.7

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHH-hcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064          172 MLGAIPPLAGMLDFQLADSQISSLYALLN-LGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD  250 (519)
Q Consensus       172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~N-La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~  250 (519)
                      .-|+.|.++++|++.-.+++..-+-+=.. |++ ++.++..+++.++-..++++|..+..-+++-+..++-+|..+..+-
T Consensus       510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf  588 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF  588 (1387)
T ss_pred             ccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence            46899999999999888877554444333 455 5888999999988888888887732213455556666666665542


Q ss_pred             -CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHH
Q 010064          251 -SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGD--MELSERILSI  326 (519)
Q Consensus       251 -~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~  326 (519)
                       -.+....+.+.|...+..|.+.   ..+-.++.++-+|..|=.+ +.++..=...++...|..+|.|  ++++..|+-+
T Consensus       589 ~lGQ~acl~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA  665 (1387)
T KOG1517|consen  589 KLGQKACLNGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA  665 (1387)
T ss_pred             chhHHHhccccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence             2355555777888888888762   2577899999999999654 4577777788999999999976  4699999999


Q ss_pred             HHHhcCC-----cccHHHH---hh-------cCCcch----hhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          327 LSNLVST-----PEGRKAI---SR-------VPDAFP----ILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       327 L~nLs~~-----~e~r~~i---~~-------~~g~i~----~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      |+.+..+     ++....+   ++       .+..+.    .++.+++ .+++-++.+.+.+|..+..+.
T Consensus       666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs-dgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS-DGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh-ccchHHHHHHHHHHHHHHHhh
Confidence            9988772     3322222   00       122233    5666677 567888888777787777653

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.36  E-value=0.0076  Score=44.61  Aligned_cols=55  Identities=20%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      |.++..|+++|.+++....+..+. ....++|.|+.++.+.++.++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            568999999999988775554333 5667899999999999999999999999864

...

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.093  Score=57.18  Aligned_cols=213  Identities=16%  Similarity=0.162  Sum_probs=128.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccC------hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKEN------SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL  207 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~------~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~  207 (519)
                      +...++.++.++.+++..|+..+.-....-      ......+ ...++..+..++...+..++..|+.+|+.+-.-++ 
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-  313 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-  313 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-
Confidence            788888898888889888865544333211      1111112 23467788888888889999999999998765433 


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh----------c----cCCCChhhhhhCCChHHHHHHhhcCC
Q 010064          208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGL----------S----ALDSNKPIIGSSGAVPFLVKTLKNSD  273 (519)
Q Consensus       208 nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L----------S----~~~~~k~~I~~~gai~~LV~lL~~~~  273 (519)
                         .|+..-.=..++.-++..    -...+.....+.+.          .    ..++.-..|+.+|+-..+|.-|..  
T Consensus       314 ---e~i~QTLdKKlms~lRRk----r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED--  384 (823)
T KOG2259|consen  314 ---EIIQQTLDKKLMSRLRRK----RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED--  384 (823)
T ss_pred             ---HHHHHHHHHHHhhhhhhh----hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH--
Confidence               333332333333322221    00011111111111          0    012234557789999999998887  


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhh
Q 010064          274 KKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPIL  350 (519)
Q Consensus       274 ~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~L  350 (519)
                        .-.+++..|+..|+.|+.+.. ..     ..++..|+.+++|+  +++..|+.+|..++..-..+...      ++.+
T Consensus       385 --Ef~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeq------l~~i  451 (823)
T KOG2259|consen  385 --EFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQ------LRQI  451 (823)
T ss_pred             --HHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHH------HHHH
Confidence              678999999999999997653 22     23677899999876  48899999999888753333322      2344


Q ss_pred             hhhccCCCCHHHHHHHHHHHH
Q 010064          351 VDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~  371 (519)
                      .+.|. ..++++++..-.+|.
T Consensus       452 l~~L~-D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  452 LESLE-DRSVDVREALRELLK  471 (823)
T ss_pred             HHHHH-hcCHHHHHHHHHHHH
Confidence            44444 234455544443333

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.02  E-value=2.1  Score=48.51  Aligned_cols=161  Identities=18%  Similarity=0.210  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHc-ccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHh
Q 010064          104 SKSEKLLDLLN-LAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGM  182 (519)
Q Consensus       104 ~~~~~l~aLl~-ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~l  182 (519)
                      .+.+++..++. +..++..         ...++.+++...+.|.+.|...--.|...++.+++.  ++.   ++..+..=
T Consensus        35 ~kidAmK~iIa~M~~G~dm---------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~kD  100 (757)
T COG5096          35 KKIDAMKKIIAQMSLGEDM---------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQKD  100 (757)
T ss_pred             HHHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHhh
Confidence            35556654443 3444442         233677777777888888888888888888877522  222   57788888


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCCh
Q 010064          183 LDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAV  262 (519)
Q Consensus       183 L~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai  262 (519)
                      |+++++.+|-.|+++|.-|-..      .+.+. +++++.+++.++   ++.++..|+-++..+=..  .+..+.+.|.+
T Consensus       101 l~d~N~~iR~~AlR~ls~l~~~------el~~~-~~~~ik~~l~d~---~ayVRk~Aalav~kly~l--d~~l~~~~g~~  168 (757)
T COG5096         101 LQDPNEEIRGFALRTLSLLRVK------ELLGN-IIDPIKKLLTDP---HAYVRKTAALAVAKLYRL--DKDLYHELGLI  168 (757)
T ss_pred             ccCCCHHHHHHHHHHHHhcChH------HHHHH-HHHHHHHHccCC---cHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence            8899999999999999987763      33332 689999999999   899999998888887644  34556678888


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC
Q 010064          263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIF  294 (519)
Q Consensus       263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~  294 (519)
                      ..+..++..    .++.+..+|+.+|+.+-..
T Consensus       169 ~~l~~l~~D----~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         169 DILKELVAD----SDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHhhC----CCchHHHHHHHHHHHhchh
Confidence            888888887    7999999999999988644

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.00  E-value=0.28  Score=53.20  Aligned_cols=263  Identities=16%  Similarity=0.104  Sum_probs=155.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENS--ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      ..+..++..|++..++++..|+.....|++--.  .--..+...|.  .|.+-|..+++++.-..+.|++.+... ...+
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv-~~~~  680 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSV-HRFR  680 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhh-hccc
Confidence            346778888999999999999988888774321  01223444554  466888889999887777777776642 2222


Q ss_pred             HH-HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064          210 AA-IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRA  287 (519)
Q Consensus       210 ~~-iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~a  287 (519)
                      .. =--.|++|.|.-+|++.   +..+..+.+..+-.+..+.+..-..-+ .-.---|+.+|.+    .+.+++++|..+
T Consensus       681 ~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks----~nKeiRR~A~~t  753 (975)
T COG5181         681 SMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS----WNKEIRRNATET  753 (975)
T ss_pred             ccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH----hhHHHHHhhhhh
Confidence            11 11248999999999998   788888887777666655432111001 1223356777877    789999999999


Q ss_pred             HHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCC---cchhhhhhccCCCCHHHHH
Q 010064          288 LYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPD---AFPILVDVLNWTDSPGCQE  364 (519)
Q Consensus       288 L~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g---~i~~Lv~lL~~s~~~~~qe  364 (519)
                      +..++.-         .|--..|..+|+.-++++.-.++-..++.     ..+....|   ++|.|+.--. +.+..+|.
T Consensus       754 fG~Is~a---------iGPqdvL~~LlnnLkvqeRq~RvctsvaI-----~iVae~cgpfsVlP~lm~dY~-TPe~nVQn  818 (975)
T COG5181         754 FGCISRA---------IGPQDVLDILLNNLKVQERQQRVCTSVAI-----SIVAEYCGPFSVLPTLMSDYE-TPEANVQN  818 (975)
T ss_pred             hhhHHhh---------cCHHHHHHHHHhcchHHHHHhhhhhhhhh-----hhhHhhcCchhhHHHHHhccc-CchhHHHH
Confidence            9988632         12222333344333333322221111111     01111123   3444444334 44556776


Q ss_pred             HHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh-hcCCC
Q 010064          365 KASYVLMVMAHKS-YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR-VDKGK  421 (519)
Q Consensus       365 ~A~~~L~nL~~~~-~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~-~~~~~  421 (519)
                      -...+++-+-..- ...++.+.  -+.|.|-+-+.+.++.-+.-|...+..|. ..+++
T Consensus       819 GvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt  875 (975)
T COG5181         819 GVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT  875 (975)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc
Confidence            6666665554320 11222222  24566666777888989999999999998 54444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.97  E-value=0.03  Score=62.13  Aligned_cols=124  Identities=16%  Similarity=0.178  Sum_probs=89.4

Q ss_pred             ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCcHHHHHHHcCCH-H--HHHHHHHHH
Q 010064          252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY-NLSIFPSNISFILETDLIRYLLEMLGDM-E--LSERILSIL  327 (519)
Q Consensus       252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~-nLs~~~~n~~~l~~~g~v~~Lv~lL~~~-~--v~~~Al~~L  327 (519)
                      .+...++.|+...|+.+...    .....+..+..+|. .+.... .    .....++++.+.+... .  -...++.+|
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~~----q~e~akl~~~~aL~~~i~f~~-~----~~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQQ----QFEEAKLKWYHALAGKIDFPG-E----RSYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hcCccccccHHHHHHHHHHH----hchHHHHHHHHHHhhhcCCCC-C----chhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            46667789999999999988    67788998999988 222111 1    1124566676666433 2  234799999


Q ss_pred             HHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 010064          328 SNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE  386 (519)
Q Consensus       328 ~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~  386 (519)
                      +||++ +...|+.+.. .-+++.+.+++. .+++..|..+...++||..++.-+...+.+
T Consensus       567 tnLas~s~s~r~~i~k-e~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~~~~~e~si~e  624 (748)
T KOG4151|consen  567 TNLASISESDRQKILK-EKALGKIEELMT-EENPALQRAALESIINLLWSPLLYERSIVE  624 (748)
T ss_pred             hcccCcchhhHHHHHH-HhcchhhHHHhh-cccHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence            99999 6778888887 567777777766 578999999999999999985444444443

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.39  Score=53.62  Aligned_cols=223  Identities=16%  Similarity=0.169  Sum_probs=114.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCC-----
Q 010064          178 PLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDS-----  251 (519)
Q Consensus       178 ~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~-----  251 (519)
                      .|..=|++.+.-+.-.|+.+|+|++.. +-.+      ...|-..++++..   ++.++..|+-+...+- ..++     
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~-Emar------dlapeVe~Ll~~~---~~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSP-EMAR------DLAPEVERLLQHR---DPYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCH-HHhH------HhhHHHHHHHhCC---CHHHHHHHHHHHHHHHHcCchHHHHh
Confidence            444445566777788899999999973 2222      2457777888887   8888887755554432 2222     


Q ss_pred             ---Chhhhhh--CC----ChHHHHHHhhcCC--CCCCHHHHHHHHHHHHHhcCCC---c-----cHHHHHhcCcHHHHHH
Q 010064          252 ---NKPIIGS--SG----AVPFLVKTLKNSD--KKVSPQAKQDALRALYNLSIFP---S-----NISFILETDLIRYLLE  312 (519)
Q Consensus       252 ---~k~~I~~--~g----ai~~LV~lL~~~~--~~~~~~~~~~A~~aL~nLs~~~---~-----n~~~l~~~g~v~~Lv~  312 (519)
                         .+..+.+  .|    ++.++..++....  -..-.++...-+..|.++....   +     .-..+++..+++ ++.
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr-lLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR-LLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH-HHH
Confidence               1222222  23    3344444444310  0011224455566666665432   1     112233322222 234


Q ss_pred             Hc--CCHHHHHHHHHHHHHhcCCcccHH----HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-
Q 010064          313 ML--GDMELSERILSILSNLVSTPEGRK----AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMI-  385 (519)
Q Consensus       313 lL--~~~~v~~~Al~~L~nLs~~~e~r~----~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~-  385 (519)
                      +|  +|++..+.-..+|.-++...+.-+    +|.-  .++..+..+..   ++.++..|+-+|...-.++..+.+.+. 
T Consensus       260 iLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY--E~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~NirYvaL  334 (866)
T KOG1062|consen  260 ILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY--ECVRTIMDIRS---NSGLRVLAINILGKFLLNRDNNIRYVAL  334 (866)
T ss_pred             HhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH--HHHHHHHhccC---CchHHHHHHHHHHHHhcCCccceeeeeh
Confidence            44  244566666666666665322222    2222  14444444443   577888899888887776554444331 


Q ss_pred             ---------HcCcH----HHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          386 ---------EAGIA----SALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       386 ---------~~G~i----~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                               +..++    ..+++.+.+.++-+|+||..++-.|.
T Consensus       335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv  378 (866)
T KOG1062|consen  335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV  378 (866)
T ss_pred             hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence                     01111    23445555555556666555555544

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.95  E-value=0.16  Score=56.55  Aligned_cols=234  Identities=14%  Similarity=0.144  Sum_probs=155.2

Q ss_pred             hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH-HhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHH--HHHHH
Q 010064          165 ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALL-NLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVS--EAIVA  241 (519)
Q Consensus       165 ~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~-NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~--~~a~~  241 (519)
                      .-+...+..|+...|+.|.....+..+..+..+|. .+.......      ...++++...+.+.    ....  -.++-
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d----~~~~en~E~L~  564 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHND----EKGLENFEALE  564 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhh----HHHHHHHHHHH
Confidence            45556677899999999998888888888888888 444322221      13456665555543    3322  24456


Q ss_pred             HHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHh-cCcHHHHHHHcCC--
Q 010064          242 NFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILE-TDLIRYLLEMLGD--  316 (519)
Q Consensus       242 aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~-~g~v~~Lv~lL~~--  316 (519)
                      ++.||+..++ .|..|...-+++.+-.++..    .++..+..++..+.||..++. ....+.+ ...++.....+..  
T Consensus       565 altnLas~s~s~r~~i~ke~~~~~ie~~~~e----e~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~  640 (748)
T KOG4151|consen  565 ALTNLASISESDRQKILKEKALGKIEELMTE----ENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD  640 (748)
T ss_pred             HhhcccCcchhhHHHHHHHhcchhhHHHhhc----ccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence            7788876654 47778876667766666655    689999999999999999887 5555666 3555555544432  


Q ss_pred             HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHH
Q 010064          317 MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLE  395 (519)
Q Consensus       317 ~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~  395 (519)
                      ..+...+++++.-+++ ...++..+.....+...++.++. +.++.+|.....+.+|+.....+....+.+...++.+..
T Consensus       641 E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~  719 (748)
T KOG4151|consen  641 EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSG  719 (748)
T ss_pred             hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHH
Confidence            3355666666665555 33444423332457778888888 678999999999999988776666677777777777766


Q ss_pred             HhhcCCHHHHHHHHHHHH
Q 010064          396 LTLLGSTLAQKRASRILE  413 (519)
Q Consensus       396 Ll~~gs~~~~~~A~~~L~  413 (519)
                      +-...-...+..+...|.
T Consensus       720 ~~~~~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  720 LQKLNRAPKREDAAPCLS  737 (748)
T ss_pred             HHHhhhhhhhhhhhhHHH
Confidence            655533344444444444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.098  Score=57.00  Aligned_cols=219  Identities=19%  Similarity=0.185  Sum_probs=136.7

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC------C
Q 010064          179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS------N  252 (519)
Q Consensus       179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~------~  252 (519)
                      |..+....+..++..|+.+|..|..+..-.+.      .....++++.+.   +..++.+|+.+++-.+.--+      +
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~---~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD---YEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch---HHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            66666667777788888887777765333332      346677888887   78899988777665542211      1


Q ss_pred             -hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cH--------------------------------
Q 010064          253 -KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NI--------------------------------  298 (519)
Q Consensus       253 -k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~--------------------------------  298 (519)
                       ...+ -..+...+...+..    .+..++..|+.+|.-+-.-.+ .+                                
T Consensus       274 ~e~kl-~D~aF~~vC~~v~D----~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS  348 (823)
T KOG2259|consen  274 EEEKL-KDAAFSSVCRAVRD----RSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS  348 (823)
T ss_pred             hhhhh-HHHHHHHHHHHHhc----CceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence             1111 12234445555554    455556666555543322111 11                                


Q ss_pred             ------------------HHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC
Q 010064          299 ------------------SFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD  358 (519)
Q Consensus       299 ------------------~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~  358 (519)
                                        ..++..|+-..++.-|.|.  +++++|+..++.|+.+...   +..  .++.-|+++++ .+
T Consensus       349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA~--~aldfLvDMfN-DE  422 (823)
T KOG2259|consen  349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FAV--RALDFLVDMFN-DE  422 (823)
T ss_pred             cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cHH--HHHHHHHHHhc-cH
Confidence                              1133344444455555544  4888999999999873221   112  36678889998 56


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064          359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQV  423 (519)
Q Consensus       359 ~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~  423 (519)
                      ...++..|.++|..++.+      ..+++..++.++.-+.+.++++++....+|.+.+....+.+
T Consensus       423 ~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i  481 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECI  481 (823)
T ss_pred             HHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHH
Confidence            677888888888877754      33455567888889999999999999999988876554443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.77  E-value=0.86  Score=50.34  Aligned_cols=271  Identities=14%  Similarity=0.130  Sum_probs=138.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCC--HHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQL--ADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~--~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      +..+.+.|.+.|+.-.+.|+.++.++-..  ++++.+..  =|+   ++|-+++  +-++..|+.+|..|-..+++-   
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---  182 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---  182 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence            44555566677777888888888887643  45555532  233   5665533  457888888888888754442   


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhh-----------hhCC---------C------hH
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPII-----------GSSG---------A------VP  263 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I-----------~~~g---------a------i~  263 (519)
                      +-..+....++.+|.+.   +..+..++...+-.|+...+  .+..+           ...|         .      .-
T Consensus       183 ~~~~~W~~riv~LL~D~---~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v  259 (938)
T KOG1077|consen  183 VNPGEWAQRIVHLLDDQ---HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV  259 (938)
T ss_pred             cChhhHHHHHHHHhCcc---ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence            22224566666666655   44444444443333332211  01100           0000         0      11


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHH---HHhcCCCccHHHHHhcCcHH----HHHHH---c-CCHHHHHHHHHHHHHhcC
Q 010064          264 FLVKTLKNSDKKVSPQAKQDALRAL---YNLSIFPSNISFILETDLIR----YLLEM---L-GDMELSERILSILSNLVS  332 (519)
Q Consensus       264 ~LV~lL~~~~~~~~~~~~~~A~~aL---~nLs~~~~n~~~l~~~g~v~----~Lv~l---L-~~~~v~~~Al~~L~nLs~  332 (519)
                      .|+++|+...+..++..+.....+|   .|.+..+.-...+.+.++..    ..+++   + .++++...|+..|+.+-+
T Consensus       260 Kl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls  339 (938)
T KOG1077|consen  260 KLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLS  339 (938)
T ss_pred             HHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhh
Confidence            2334444322223444444433333   33333222111111122211    11222   2 234466666666666555


Q ss_pred             CcccH-HHH--------hhc-------CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064          333 TPEGR-KAI--------SRV-------PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL  396 (519)
Q Consensus       333 ~~e~r-~~i--------~~~-------~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L  396 (519)
                      +.|.. +-+        ...       ..-...++..|+-..+..++..|+..|+.||.  .++.+.+     |.-|++.
T Consensus       340 ~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~I-----V~elLqY  412 (938)
T KOG1077|consen  340 HRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQI-----VAELLQY  412 (938)
T ss_pred             cccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHH-----HHHHHHH
Confidence            32211 100        000       01144555556644566778888888888884  3555444     4567888


Q ss_pred             hhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064          397 TLLGSTLAQKRASRILECLRVDKGKQVS  424 (519)
Q Consensus       397 l~~gs~~~~~~A~~~L~~l~~~~~~~~~  424 (519)
                      +.+.++.+|+....=.+.|++-..+...
T Consensus       413 L~tAd~sireeivlKvAILaEKyAtDy~  440 (938)
T KOG1077|consen  413 LETADYSIREEIVLKVAILAEKYATDYS  440 (938)
T ss_pred             HhhcchHHHHHHHHHHHHHHHHhcCCcc
Confidence            8888888888887778888877666554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.75  E-value=0.19  Score=55.74  Aligned_cols=245  Identities=19%  Similarity=0.162  Sum_probs=158.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.+++.....|.+.|...--.+.+-+...+...     .+++..++.=...+++.++..|.+.++-+-++      .+.
T Consensus        51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~------~i~  119 (734)
T KOG1061|consen   51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD------KIT  119 (734)
T ss_pred             hHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh------HHH
Confidence            6778888888888888888888888887764332     34677777766778999999999988887774      222


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      +. +..+|.+++++.   ++.++..++-.+.++-.  .+.......|.++.|.+++..    .++.+..+|+.+|..+..
T Consensus       120 ey-~~~Pl~~~l~d~---~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D----~~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  120 EY-LCDPLLKCLKDD---DPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSD----SNPMVVANALAALSEIHE  189 (734)
T ss_pred             HH-HHHHHHHhccCC---ChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcC----CCchHHHHHHHHHHHHHH
Confidence            22 578899999998   78888877665555543  345666789999999999996    799999999999999976


Q ss_pred             CCcc-HHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          294 FPSN-ISFILETDLIRYLLEMLGDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       294 ~~~n-~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                      ...+ -...+..-.+..++..+.... ...-+.+|-+|+.+ +..-....   ..+..+...|. +.++.+.-.++.+++
T Consensus       190 ~~~~~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lq-h~n~avvlsavKv~l  264 (734)
T KOG1061|consen  190 SHPSVNLLELNPQLINKLLEALNECT-EWGQIFILDCLAEYVPKDSREAE---DICERLTPRLQ-HANSAVVLSAVKVIL  264 (734)
T ss_pred             hCCCCCcccccHHHHHHHHHHHHHhh-hhhHHHHHHHHHhcCCCCchhHH---HHHHHhhhhhc-cCCcceEeehHHHHH
Confidence            5542 222222233444554443332 12233344444441 11111111   13345666666 456777777788887


Q ss_pred             HHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHH
Q 010064          372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK  406 (519)
Q Consensus       372 nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~  406 (519)
                      .+...-.. ....+-..+.|+|+.++...+ ..+-
T Consensus       265 ~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qy  297 (734)
T KOG1061|consen  265 QLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQY  297 (734)
T ss_pred             HHHHHHHH-HHHHHHHHhcccceeeecccc-hhhH
Confidence            77754222 333344456677777776665 4443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.72  E-value=0.037  Score=40.86  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          188 ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGL  246 (519)
Q Consensus       188 ~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L  246 (519)
                      +.++..|+++|.+++...+..-.. .-..+++.|+.+|+++   +..++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~---~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD---DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS---SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC---CHHHHHHHHHHHhcC
Confidence            467899999999998764444333 5556999999999988   789999999998764

...

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.47  E-value=0.19  Score=49.62  Aligned_cols=103  Identities=12%  Similarity=0.065  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL  224 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l  224 (519)
                      ......|+..|..++--++..|..+.+...+..|+.+|+. ..+.++.+++.+|..+..+++.|...+-+.+++..++.+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            3356778899999888888999999999999999999954 678999999999999999999999999999999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHH-HhccC
Q 010064          225 IESPVAPNPSVSEAIVANFL-GLSAL  249 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~-~LS~~  249 (519)
                      +++... +.+++-.++-.|+ .|...
T Consensus       185 lk~~~~-~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSKST-DRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             Hccccc-cHHHhHHHHHHHHHHHccc
Confidence            998754 6667666655554 45433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.073  Score=58.97  Aligned_cols=69  Identities=19%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN  205 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~  205 (519)
                      +.++.+.++.+++.++..|+.++.++-..   ..+.....|.++.|..++...++.+-.+|+.+|..+...+
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            57888888899999999999998887744   3445668999999999999999999999999999998753

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.76  Score=51.28  Aligned_cols=255  Identities=18%  Similarity=0.154  Sum_probs=158.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH-----
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA-----  211 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~-----  211 (519)
                      +=..|.+...-+..+|+..+..|....  .|. +.  .++..|=-+|+++.+.+|..|.++|..+|.. .+++..     
T Consensus       250 l~s~l~~K~emV~~EaArai~~l~~~~--~r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~-~P~~v~~cN~e  323 (865)
T KOG1078|consen  250 LESCLRHKSEMVIYEAARAIVSLPNTN--SRE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK-HPQAVTVCNLD  323 (865)
T ss_pred             HHHHHhchhHHHHHHHHHHHhhccccC--Hhh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-CCccccccchh
Confidence            333455667778889999998887543  232 21  2677777788899999999999999999853 222111     


Q ss_pred             ----HHhcC---cHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhccCCCChhh-------------hhhCCChHHHHHHhh
Q 010064          212 ----IVKAG---AVHKMLKLIESPVAPNP-SVSEAIVANFLGLSALDSNKPI-------------IGSSGAVPFLVKTLK  270 (519)
Q Consensus       212 ----iv~aG---~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~~~~~k~~-------------I~~~gai~~LV~lL~  270 (519)
                          |-+.+   +.+++-.+|+.+.+.+. .+...+......+|.  +.|-.             .-..+.+.+|-.+|.
T Consensus       324 lE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD--eFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr  401 (865)
T KOG1078|consen  324 LESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD--EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR  401 (865)
T ss_pred             HHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--cceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence                11111   22334445555421011 112222333333332  11111             113456788888888


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064          271 NSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPI  349 (519)
Q Consensus       271 ~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~  349 (519)
                      +.   +..+-+...+.++..+... ++.+.     -++..|+..+.|++...-+..+|.-|-.  ++-....- ...+..
T Consensus       402 ~e---Gg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~P-skyir~  470 (865)
T KOG1078|consen  402 EE---GGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNP-SKYIRF  470 (865)
T ss_pred             hc---cCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCc-chhhHH
Confidence            74   7888888888888877763 33332     3667888999888877778887776654  12222222 334444


Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          350 LVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       350 Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +...+. =.+..++..|+.+|.++..+.+..+.     -+.-.|.+.+.+.+..++.+|...|..+.
T Consensus       471 iyNRvi-LEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  471 IYNRVI-LENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             Hhhhhh-hhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            544333 23678899999999998865444322     23445667777889999999999999998

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.69  Score=51.15  Aligned_cols=213  Identities=15%  Similarity=0.117  Sum_probs=135.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CCh
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNK  253 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k  253 (519)
                      ..+-++.+|.+.-+=++..|..+|+.+...-++.   +.  -.+|.|.+-|.++   ++.++.+|+..++.|+.-. .+-
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDp---Dp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDP---DPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCC---CchHHHHHHHHHHHHHhhCCccc
Confidence            3456788888888999999999999988753332   11  2579999999999   9999999999999999643 332


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HHHHHHHHHH--
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LSERILSILS--  328 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~~~Al~~L~--  328 (519)
                      -     ..-|.+.++|...   .+--+....+....+|+-...-    +-...+++|..++.+..   +.-++..++.  
T Consensus       217 L-----~LAP~ffkllttS---sNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~  284 (877)
T KOG1059|consen  217 L-----QLAPLFYKLLVTS---SNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAV  284 (877)
T ss_pred             c-----cccHHHHHHHhcc---CCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence            2     2357778888764   5556677777777777754431    22346788888886543   3334444332  


Q ss_pred             HhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064          329 NLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR  407 (519)
Q Consensus       329 nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~  407 (519)
                      |+++. +++-..+.-   ++..|-.++. ..++.++-.++-++.-+....+...++-     -..++..+.+.++.+|-+
T Consensus       285 s~s~g~~d~~asiqL---CvqKLr~fie-dsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlr  355 (877)
T KOG1059|consen  285 SMSSGMSDHSASIQL---CVQKLRIFIE-DSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLR  355 (877)
T ss_pred             hhccCCCCcHHHHHH---HHHHHhhhhh-cCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHH
Confidence            34442 233333322   6677777777 5677777777777777765544322211     122355555666666666


Q ss_pred             HHHHHHHhh
Q 010064          408 ASRILECLR  416 (519)
Q Consensus       408 A~~~L~~l~  416 (519)
                      |..+|--+.
T Consensus       356 ALdLl~gmV  364 (877)
T KOG1059|consen  356 ALDLLYGMV  364 (877)
T ss_pred             HHHHHHHHh
Confidence            666655444

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.42  E-value=0.65  Score=51.33  Aligned_cols=239  Identities=16%  Similarity=0.192  Sum_probs=140.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      ...++.+|++.-+-+|..|+..+..+.-.-+ ..|.      ++|-|++=|+.+|+.++.+|...++.||..|+.|--.+
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L  219 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL  219 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence            5667788888888899999988888664333 3333      67999999999999999999999999999888875433


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC-------------------C
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-------------------D  273 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-------------------~  273 (519)
                           -|.+.++|-..+  +--+.-..+-.+.+|+..++-   + ....+++|..++.+.                   .
T Consensus       220 -----AP~ffkllttSs--NNWmLIKiiKLF~aLtplEPR---L-gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  220 -----APLFYKLLVTSS--NNWVLIKLLKLFAALTPLEPR---L-GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             -----cHHHHHHHhccC--CCeehHHHHHHHhhccccCch---h-hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                 477777776542  333444445555666655432   1 222455555555442                   0


Q ss_pred             -CCCCHHHHHHHHHHHHHhcCCCc-cHHHH--------Hhc--CcHH----HHHHHcCC--HHHHHHHHHHHHHhcCCcc
Q 010064          274 -KKVSPQAKQDALRALYNLSIFPS-NISFI--------LET--DLIR----YLLEMLGD--MELSERILSILSNLVSTPE  335 (519)
Q Consensus       274 -~~~~~~~~~~A~~aL~nLs~~~~-n~~~l--------~~~--g~v~----~Lv~lL~~--~~v~~~Al~~L~nLs~~~e  335 (519)
                       -.........|+.=|+-+..+.+ |...+        ...  .+|+    .++..|.|  +.++..|+..|..++.. +
T Consensus       289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk-k  367 (877)
T KOG1059|consen  289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK-K  367 (877)
T ss_pred             CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh-h
Confidence             11344555566666666666554 44332        111  1222    22344433  34777788777777653 2


Q ss_pred             cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHHhh
Q 010064          336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG-IASALLELTL  398 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G-~i~~Ll~Ll~  398 (519)
                      +-.+|+.      .|+..+...+....+..-+.-+..+|..  .+-+.+.+.. -+..|++|..
T Consensus       368 Nl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~--snY~~ItdFEWYlsVlveLa~  423 (877)
T KOG1059|consen  368 NLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQ--SNYQYITDFEWYLSVLVELAR  423 (877)
T ss_pred             hHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHh
Confidence            3444444      5555554333334555555555555532  2233444433 3666777766

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.37  E-value=2.2  Score=47.52  Aligned_cols=69  Identities=22%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh---HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD---RQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~---~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .+.+|.|.-+|+ +.+.++|+.++.++..+|..++++   |+-|.   +-=-|++++......++..|...+.+++
T Consensus       882 ~dllPrltPILk-nrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  882 KDLLPRLTPILK-NRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             hhhcccchHhhh-hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            468999999999 678999999999999999876654   33332   1223566666556666666655444443

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.37  E-value=0.47  Score=51.18  Aligned_cols=273  Identities=12%  Similarity=0.051  Sum_probs=150.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++..++.-+.++.+.+..|..++.++..-.-..-....+.-.........+++++++...+...-.-++.  +++...+.
T Consensus       223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWstice--Eeid~~~e  300 (858)
T COG5215         223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICE--EEIDGEME  300 (858)
T ss_pred             heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH--HHhhhHHH
Confidence            4455555566788899999999998775433333444444455555677788898888777765545553  22211111


Q ss_pred             ------------------hcCcHHHHHHhhcCCCC-C---CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhc
Q 010064          214 ------------------KAGAVHKMLKLIESPVA-P---NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKN  271 (519)
Q Consensus       214 ------------------~aG~v~~Lv~lL~s~~~-~---~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~  271 (519)
                                        -+.++|.|+.+|....+ +   +-....+|...|--.+..  ....|... ++.++=+-+++
T Consensus       301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~p-Vl~FvEqni~~  377 (858)
T COG5215         301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMRP-VLGFVEQNIRS  377 (858)
T ss_pred             HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHHH-HHHHHHHhccC
Confidence                              23478999999876322 1   112233333333222211  12222222 33333333444


Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcch
Q 010064          272 SDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFP  348 (519)
Q Consensus       272 ~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~  348 (519)
                          .+-.-+..|+.++..+..++. ....-+-..++|.+...+.|+-  +.+-+.|+++.++.+-   ..+++-.+-++
T Consensus       378 ----~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~  450 (858)
T COG5215         378 ----ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLV  450 (858)
T ss_pred             ----chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCcccccc
Confidence                677889999999999988775 2222233567888888887765  6778889999888631   12222122222


Q ss_pred             hhhhhc--cCCCCHHHHHHHHHHHHHHhcCChhh-HH--HHH---HcCcHHHHHHHhh--cCCHHHHHHHHHHHHHhhhc
Q 010064          349 ILVDVL--NWTDSPGCQEKASYVLMVMAHKSYGD-RQ--AMI---EAGIASALLELTL--LGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       349 ~Lv~lL--~~s~~~~~qe~A~~~L~nL~~~~~~~-~~--~i~---~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l~~~  418 (519)
                      ..+.-.  .-.++|....+++|...||..+-.+. ++  .++   -..++..|+.-..  ......|..+-.+|.-|..-
T Consensus       451 ~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~  530 (858)
T COG5215         451 LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI  530 (858)
T ss_pred             HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence            222111  11246889999999999998652221 11  111   1223333333222  22334566666666666643

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.30  E-value=2.2  Score=48.96  Aligned_cols=247  Identities=18%  Similarity=0.144  Sum_probs=141.3

Q ss_pred             HHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc----CCCC-CCHHHHHH
Q 010064          169 TLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE----SPVA-PNPSVSEA  238 (519)
Q Consensus       169 ~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~----s~~~-~~~~~~~~  238 (519)
                      .+.+.|++..|+.+|++     ...++-...+..|..++. -..||+.+++.|+++.|+..+.    .+.+ ....+.+.
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~  190 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ  190 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence            45568999999999976     233455566777777777 4999999999999999998763    3310 02455555


Q ss_pred             HHHHHHHhccC---CCChhhh--hhC--------CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 010064          239 IVANFLGLSAL---DSNKPII--GSS--------GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD  305 (519)
Q Consensus       239 a~~aL~~LS~~---~~~k~~I--~~~--------gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g  305 (519)
                      ...++-.|...   .+.....  ...        .-+..|++.+.+.....++.+....++.|-+|+-+....-..+-.-
T Consensus       191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            54444333221   1111110  111        1266777777664344678899999999999998876433222111


Q ss_pred             cHHHHHHHc--CCH--HHHHHHHHHHHHhcC----C---cccHHHHhhcCCcchhhhhhccCC-------CCHHHH----
Q 010064          306 LIRYLLEML--GDM--ELSERILSILSNLVS----T---PEGRKAISRVPDAFPILVDVLNWT-------DSPGCQ----  363 (519)
Q Consensus       306 ~v~~Lv~lL--~~~--~v~~~Al~~L~nLs~----~---~e~r~~i~~~~g~i~~Lv~lL~~s-------~~~~~q----  363 (519)
                      . .+.+.+=  +..  +-...-+.+++.++.    +   ..-|..|++ .|.+...++.|...       .+++..    
T Consensus       271 F-~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  271 F-KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             H-HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            1 1111111  100  011123444555543    2   245667777 78888888877421       233333    


Q ss_pred             ----HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhhcC
Q 010064          364 ----EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRVDK  419 (519)
Q Consensus       364 ----e~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~~~  419 (519)
                          ..+..+|.-|+.+.. ..|.++..+++|.+-.|-... +..+-..|-.+|.-|++++
T Consensus       349 ~psLp~iL~lL~GLa~gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence                235666777777643 344446666776665555543 4455556666776666543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.30  E-value=0.58  Score=45.50  Aligned_cols=149  Identities=16%  Similarity=0.091  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHH
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVH  219 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~  219 (519)
                      ....++|+..+.-++.+ ++.|..|.+.-.--.|..+|..     +.+-++..++..+..|...++.. -..+...++||
T Consensus        93 snRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             cchHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            34567888888888865 6899999888877777788753     45679999999999999875555 44455679999


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--------CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--------SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--------~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ..++.+..+   +...+..|+.++-.+-.++..-..|.+        .-.+..+|.-+.+.   .+......++++..+|
T Consensus       172 lCLrime~G---SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~---ps~RllKhviRcYlrL  245 (293)
T KOG3036|consen  172 LCLRIMESG---SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM---PSPRLLKHVIRCYLRL  245 (293)
T ss_pred             HHHHHHhcc---cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHh
Confidence            999999999   777788787777666666655544432        12333444444443   7888888889998888


Q ss_pred             cCCCccHHHH
Q 010064          292 SIFPSNISFI  301 (519)
Q Consensus       292 s~~~~n~~~l  301 (519)
                      +.++..+..+
T Consensus       246 sdnprar~aL  255 (293)
T KOG3036|consen  246 SDNPRARAAL  255 (293)
T ss_pred             cCCHHHHHHH
Confidence            8887655543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.15  E-value=1.2  Score=45.21  Aligned_cols=170  Identities=14%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             HHHHH-HHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh--HH
Q 010064          134 LKIVV-KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN--KA  210 (519)
Q Consensus       134 l~~Lv-~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n--k~  210 (519)
                      +..+| ..+.+.+..+|..|+.+|...+--+.+....     .++.+...++.++..++..|+.+|+.+..-....  ..
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            55555 5678889999999999999988666433332     3667888887789999999999999998532211  11


Q ss_pred             ------HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          211 ------AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       211 ------~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                            ......++..+...+.+.   +++++..++-.+..|-.......   ....+..|+-++-++....+...++.-
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence                  112235778888899988   78999999888888765433222   134566666666554344556777766


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064          285 LRALYNLSIFPSNISFILETDLIRYLLEML  314 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL  314 (519)
                      ...+-..+......+..+....++.+-.+.
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~  206 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLS  206 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            667777776666445566666666665555

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.09  E-value=0.9  Score=46.39  Aligned_cols=187  Identities=17%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC--C-
Q 010064          221 MLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF--P-  295 (519)
Q Consensus       221 Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~--~-  295 (519)
                      .+..+...   +...++.++..|..+....-....+..  ...+..+.+.++.    +..+-+..|+.++.-|+..  . 
T Consensus        48 ~Id~l~eK---~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk----g~~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   48 AIDLLTEK---SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK----GKSEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHhc---CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHhhhcCCC
Confidence            34444444   578888888888776544322222222  3356677777776    4556667777777766654  2 


Q ss_pred             ccHHHHHhcCcHHHHHHHcCCH----HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhh--hhcc---------C
Q 010064          296 SNISFILETDLIRYLLEMLGDM----ELSERILSILSNLVS----TPEGRKAISRVPDAFPILV--DVLN---------W  356 (519)
Q Consensus       296 ~n~~~l~~~g~v~~Lv~lL~~~----~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv--~lL~---------~  356 (519)
                      .....+.+ ...|+|..++.|.    .++..++.+|+-++.    .++......+   .+..+.  .+++         .
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~  196 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAA  196 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccC
Confidence            23444433 5777888888643    244555555555443    2222221112   222111  1122         1


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcC
Q 010064          357 TDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK  419 (519)
Q Consensus       357 s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~  419 (519)
                      .+++.+...|+...+-|...-+. ..... -...+|.|..++...+..+|..|..+|+.|.+-.
T Consensus       197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  197 EDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            22356777775554444433222 22222 2446899999999999999999999999998653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.08  E-value=3.7  Score=40.13  Aligned_cols=177  Identities=15%  Similarity=0.181  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHH
Q 010064          192 ISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVK  267 (519)
Q Consensus       192 ~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~  267 (519)
                      -.++..|--++. .++-|..++++-+--.|-.+|.....  +.+-++-.+.+.+..|..+++.  -..+...+.||..++
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr  175 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR  175 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence            344444555555 48889999998764444444432211  2567888899999999877653  334457999999999


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc----C----cHHHHHHHc---CCHHHHHHHHHHHHHhcCCccc
Q 010064          268 TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET----D----LIRYLLEML---GDMELSERILSILSNLVSTPEG  336 (519)
Q Consensus       268 lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~----g----~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~  336 (519)
                      .+..    ++...+.-|+.+|.-+..++.....+.+.    -    .+..++.-|   .+..+...++++..+|+.++..
T Consensus       176 ime~----GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra  251 (293)
T KOG3036|consen  176 IMES----GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA  251 (293)
T ss_pred             HHhc----ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence            9998    78899999999998888777644444332    1    222222222   2344888999999999999999


Q ss_pred             HHHHhhc-CC-cc-hhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064          337 RKAISRV-PD-AF-PILVDVLNWTDSPGCQEKASYVLMVMAH  375 (519)
Q Consensus       337 r~~i~~~-~g-~i-~~Lv~lL~~s~~~~~qe~A~~~L~nL~~  375 (519)
                      |.++..+ ++ .- ..+-.++.  +++..+..-...+.||+.
T Consensus       252 r~aL~~clPd~Lrd~tfs~~l~--~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  252 RAALRSCLPDQLRDGTFSLLLK--DDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHHHHhhCcchhccchHHHHHh--cChhHHHHHHHHHHHhcc
Confidence            9888652 01 11 12233344  345555554555555553

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.06  E-value=0.31  Score=50.90  Aligned_cols=246  Identities=17%  Similarity=0.153  Sum_probs=133.2

Q ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCH-HHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLA-DSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~-~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .+.-++.-|.++ ....|+.++..|..-+. ++..|..+...|.+..+++.+. .++. ..-..++.+++-++. +..+-
T Consensus        22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~-d~~~~   99 (361)
T PF07814_consen   22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSR-DGLNM   99 (361)
T ss_pred             HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHcc-CCcch
Confidence            366777777743 45678899988888774 5799999999999999999994 3443 444444555555554 35555


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHH-HHHHHhccCCCChhhhhhCCChHHHHHHhhcC-----CCCCCHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIV-ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS-----DKKVSPQAKQD  283 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~-~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~-----~~~~~~~~~~~  283 (519)
                      ..+...+.+..+++++....  ........- .-=.+++       .+ ....+..+..++...     ........+.-
T Consensus       100 ~l~~~~~~~~ll~~Ll~~~~--~~~~~~~~~~~~~~~ls-------k~-~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~l  169 (361)
T PF07814_consen  100 HLLLDRDSLRLLLKLLKVDK--SLDVPSDSDSSRKKNLS-------KV-QQKSRSLCKELLSSGSSWKSPKPPELSPQTL  169 (361)
T ss_pred             hhhhchhHHHHHHHHhcccc--ccccccchhhhhhhhhh-------HH-HHHHHHHHHHHHhccccccccCCcccccccH
Confidence            55556677788788887110  000000000 0000000       00 001111111111000     00012222333


Q ss_pred             HHHHHHHhc-----------C---C-CccHHHHHhcCcHHHHHHHcCC----H------------H--HHHHHHHHHHHh
Q 010064          284 ALRALYNLS-----------I---F-PSNISFILETDLIRYLLEMLGD----M------------E--LSERILSILSNL  330 (519)
Q Consensus       284 A~~aL~nLs-----------~---~-~~n~~~l~~~g~v~~Lv~lL~~----~------------~--v~~~Al~~L~nL  330 (519)
                      |+.+|-.++           .   . ...+..+.+-|++..++.++.+    .            +  ..+.++.+|.|-
T Consensus       170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~  249 (361)
T PF07814_consen  170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV  249 (361)
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence            444443331           0   0 1134556677888888887631    0            1  556899999998


Q ss_pred             cC-CcccHHHHhhcC-Ccchhhhhhc-cC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcH
Q 010064          331 VS-TPEGRKAISRVP-DAFPILVDVL-NW--TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIA  390 (519)
Q Consensus       331 s~-~~e~r~~i~~~~-g~i~~Lv~lL-~~--s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i  390 (519)
                      +. ..++...+.... +.++.+...+ ..  ...+.++..++.++.||+++++..++.+...+++
T Consensus       250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~  314 (361)
T PF07814_consen  250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLG  314 (361)
T ss_pred             HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhc
Confidence            87 556666655432 2222333322 21  1123446778999999999988877777655443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=1.1  Score=49.51  Aligned_cols=113  Identities=18%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-C-ccc--
Q 010064          263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-T-PEG--  336 (519)
Q Consensus       263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~-~e~--  336 (519)
                      ..++..|+.   +.+..+++.|+..|+-+|...+ ...|     |.-|++.|.  |..+++...-=..-|+. + .+.  
T Consensus       371 d~Ii~sLkt---erDvSirrravDLLY~mcD~~N-ak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W  441 (938)
T KOG1077|consen  371 DTIINSLKT---ERDVSIRRRAVDLLYAMCDVSN-AKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSW  441 (938)
T ss_pred             HHHHHHhcc---ccchHHHHHHHHHHHHHhchhh-HHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch
Confidence            344455553   3788999999999999986543 3332     344555553  33355544333334443 1 110  


Q ss_pred             ----HH-------HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064          337 ----RK-------AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG  388 (519)
Q Consensus       337 ----r~-------~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G  388 (519)
                          .-       .+++ .+.|..+++++-  .++++|..|+..+....+. +...+.|++.|
T Consensus       442 yVdviLqLiriagd~vs-deVW~RvvQiVv--Nnedlq~yaak~~fe~Lq~-~a~hE~mVKvg  500 (938)
T KOG1077|consen  442 YVDVILQLIRIAGDYVS-DEVWYRVVQIVV--NNEDLQGYAAKRLFEYLQK-PACHENMVKVG  500 (938)
T ss_pred             hHHHHHHHHHHhccccc-HHHHHHhheeEe--cchhhhHHHHHHHHHHHhh-hHHHHHHHHhh
Confidence                00       1234 578899999887  3788999888887776655 45555555543

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=95.02  E-value=0.36  Score=44.07  Aligned_cols=117  Identities=12%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             HHHHhcCcHHHHHHHcCC--------HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHH
Q 010064          299 SFILETDLIRYLLEMLGD--------MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYV  369 (519)
Q Consensus       299 ~~l~~~g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~  369 (519)
                      ..++..+++..|+.++.+        .++...++.++..|-.+.-.-....+ ..++..++.+++... ++.+...|..+
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHH
Confidence            467888999999999943        23566788888888776554455666 578999999998443 57899999999


Q ss_pred             HHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          370 LMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       370 L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      |-++...++...+.+.++=-++.|+..+...++.+|..|..++--|-
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999998887888888888999999999999999999888776554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.93  E-value=4.1  Score=40.24  Aligned_cols=199  Identities=23%  Similarity=0.231  Sum_probs=123.4

Q ss_pred             cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064          173 LGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD  250 (519)
Q Consensus       173 ~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~  250 (519)
                      ..+++.|+..|..  ..+.++..|+.+|.++..  +         +.++.|-+..+.+   -..+++.+-.++..+-..+
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp---~~~v~ETc~lAi~rle~~~  131 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDP---CKEVRETCELAIKRLEWKD  131 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCC---ccccchHHHHHHHHHHHhh
Confidence            3478999998865  557788899999999873  2         3556666766555   5666665555554443211


Q ss_pred             C-----Ch-hhh-------hhCCChHHHHHHhhcCCCCCCHH-HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC
Q 010064          251 S-----NK-PII-------GSSGAVPFLVKTLKNSDKKVSPQ-AKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD  316 (519)
Q Consensus       251 ~-----~k-~~I-------~~~gai~~LV~lL~~~~~~~~~~-~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~  316 (519)
                      .     +. +.+       ...+-|.-|-..|...   ..+. -+..|...|+|+-..          .+|..|..-+.+
T Consensus       132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~---t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~  198 (289)
T KOG0567|consen  132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDE---TKPLFERYRAMFYLRNIGTE----------EAINALIDGLAD  198 (289)
T ss_pred             ccccccccCccccCCCCCccccccHHHHHHHHHhc---chhHHHHHhhhhHhhccCcH----------HHHHHHHHhccc
Confidence            0     00 111       1222344444444331   2222 233444455544211          133444444543


Q ss_pred             HH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH
Q 010064          317 ME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASAL  393 (519)
Q Consensus       317 ~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~L  393 (519)
                      +.  ++..+..+|+-|-+           +-.|+.|.+.|. ...+|.++-.|+.+|+.++.  ++         +++.|
T Consensus       199 ~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL  256 (289)
T KOG0567|consen  199 DSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVL  256 (289)
T ss_pred             chHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHH
Confidence            33  67788888876543           346677777664 24678999999999998874  33         68888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064          394 LELTLLGSTLAQKRASRILECLRVDKG  420 (519)
Q Consensus       394 l~Ll~~gs~~~~~~A~~~L~~l~~~~~  420 (519)
                      .+++.+..+-+++.+..+|..+.....
T Consensus       257 ~e~~~D~~~vv~esc~valdm~eyens  283 (289)
T KOG0567|consen  257 KEYLGDEERVVRESCEVALDMLEYENS  283 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998875543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=94.90  E-value=3.9  Score=44.42  Aligned_cols=105  Identities=13%  Similarity=0.069  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhcCC-------CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHH
Q 010064          132 EELKIVVKDLQSE-------SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML----DFQLADSQISSLYALLN  200 (519)
Q Consensus       132 ~~l~~Lv~~L~s~-------~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----~s~~~~~~~~a~~aL~N  200 (519)
                      ..++.|+++|...       ++..-..|..+|...+..   ..+.     .+.|++.++    ++++-.-++.++.|++.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~-----i~~pVl~FvEqni~~~~w~nreaavmAfGS  392 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDK-----IMRPVLGFVEQNIRSESWANREAAVMAFGS  392 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhH-----hHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence            4588888888642       334556777777766522   1112     234454544    55777889999999999


Q ss_pred             hcCCCh-hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc
Q 010064          201 LGIGND-LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA  248 (519)
Q Consensus       201 La~~~~-~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~  248 (519)
                      .-.+.. .....++. .++|.+...+.++   ..-+++.++|++..++.
T Consensus       393 vm~gp~~~~lT~~V~-qalp~i~n~m~D~---~l~vk~ttAwc~g~iad  437 (858)
T COG5215         393 VMHGPCEDCLTKIVP-QALPGIENEMSDS---CLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             hhcCccHHHHHhhHH-hhhHHHHHhcccc---eeehhhHHHHHHHHHHH
Confidence            887522 23444443 4788888888766   67778878888777763

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.83  E-value=0.095  Score=45.45  Aligned_cols=72  Identities=19%  Similarity=0.271  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064          132 EELKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI  203 (519)
Q Consensus       132 ~~l~~Lv~~L~-s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~  203 (519)
                      +.+..|++.|. +.++....-|+.-|..+++..+..|..+-+.|+=..++.++.++|++++..|+.++..|-.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44888899894 4456667779999999999999999988889999999999999999999999999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=2.6  Score=48.85  Aligned_cols=248  Identities=17%  Similarity=0.117  Sum_probs=139.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      +..|+..|++.+..++..||+-+..++...+  . .++ ..+|...++++.- ++...-..++.+|..|+.. .--.-..
T Consensus       343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~r-GlLlps~  417 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALR-GLLLPSL  417 (1133)
T ss_pred             HHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-CCcchHH
Confidence            7888888899999999999999999998875  2 222 2356666665543 3345555788888888864 1111111


Q ss_pred             HhcCcHHHHHHhhcCCCC-----CCHHHHHHHHHHHHHhccCCC---ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          213 VKAGAVHKMLKLIESPVA-----PNPSVSEAIVANFLGLSALDS---NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~-----~~~~~~~~a~~aL~~LS~~~~---~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                      ++ .++|.+++-+.-...     ....++.+|+.++|.++..-+   .++ +.+.-+-..|...+-.    .+..+++.|
T Consensus       418 l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFD----revncRRAA  491 (1133)
T KOG1943|consen  418 LE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFD----REVNCRRAA  491 (1133)
T ss_pred             HH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcC----chhhHhHHH
Confidence            11 356666664422100     035688999999998875422   133 2222222233333333    578899999


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHH-HHhcCCcccHHHHhhcCCcchhhhhh-ccCCCCH
Q 010064          285 LRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSIL-SNLVSTPEGRKAISRVPDAFPILVDV-LNWTDSP  360 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L-~nLs~~~e~r~~i~~~~g~i~~Lv~l-L~~s~~~  360 (519)
                      ..||........|.+.     ++ .|+...+.-.  .+.++-..| ..++..+..+.-+.+      .|+.- +. +-++
T Consensus       492 sAAlqE~VGR~~n~p~-----Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~------~L~t~Kv~-HWd~  558 (1133)
T KOG1943|consen  492 SAALQENVGRQGNFPH-----GI-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN------HLLTKKVC-HWDV  558 (1133)
T ss_pred             HHHHHHHhccCCCCCC-----ch-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH------HHHhcccc-cccH
Confidence            9998766544333211     11 1222222111  111211111 122224444444444      22222 22 2368


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          361 GCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       361 ~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      .+++.++++|.+|....++    ....+..|.|+..+..++...+.-+-
T Consensus       559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~  603 (1133)
T KOG1943|consen  559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVF  603 (1133)
T ss_pred             HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhH
Confidence            8999999999998865443    23346678888887777776655433

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.80  E-value=2.1  Score=42.25  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcCCCC----CC--H---HHHHHHHHHHHHhccCCCChhh
Q 010064          186 QLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIESPVA----PN--P---SVSEAIVANFLGLSALDSNKPI  255 (519)
Q Consensus       186 ~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~----~~--~---~~~~~a~~aL~~LS~~~~~k~~  255 (519)
                      -+++.++.|+.-|..--...+.-.-.+-. .|.+..|++=+-+-..    ++  .   .-...|++.|-.++.+++.|..
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            46777777766666554432333333333 4888888772221100    01  1   1223556666778999999999


Q ss_pred             hhhCCChHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064          256 IGSSGAVPFLVKTLKNSDKK-VSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEMLG--DMELSERILSILSNL  330 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~-~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL  330 (519)
                      +.+....-.|...|...... .-...+...+..+..|...++  .+.+++++..+|..+..++  +.-.+.-|..++..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99988777777777652101 125578889999999987554  6788889999999999984  444677788888888


Q ss_pred             cCCcccHHHHhhcC-------CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH-----HHHhh
Q 010064          331 VSTPEGRKAISRVP-------DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASAL-----LELTL  398 (519)
Q Consensus       331 s~~~e~r~~i~~~~-------g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~L-----l~Ll~  398 (519)
                      -.++.+-.-+..+.       .++..++..|....++.+-++.+.+-..|+.+ +..++++.+  .+|..     ..-+.
T Consensus       167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~--~LP~~Lrd~~f~~~l  243 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ--CLPDQLRDGTFSNIL  243 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH--HS-GGGTSSTTTTGG
T ss_pred             HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH--hCcHHHhcHHHHHHH
Confidence            77776666554422       24445555444356888999999999999987 455665553  22221     11122


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 010064          399 LGSTLAQKRASRILECL  415 (519)
Q Consensus       399 ~gs~~~~~~A~~~L~~l  415 (519)
                      .+++.+++--..++.++
T Consensus       244 ~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  244 KDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             CS-HHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            34677777666666654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.76  E-value=0.24  Score=41.45  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=64.1

Q ss_pred             HHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCcHHHHHHHhh
Q 010064          322 RILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE--AGIASALLELTL  398 (519)
Q Consensus       322 ~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~--~G~i~~Ll~Ll~  398 (519)
                      .++..|...+. -+..-....+  ..++.++..+. ..++.++..|+.+|.|++..   .+..++.  ..+.+.|..++.
T Consensus         5 ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    5 GGLIGLAAVAIALGKDISKYLD--EILPPVLKCFD-DQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             HHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            34555555544 2222233333  37888888888 67899999999999999853   3444443  568899999999


Q ss_pred             cCCHHHHHHHHHHHHHhhh
Q 010064          399 LGSTLAQKRASRILECLRV  417 (519)
Q Consensus       399 ~gs~~~~~~A~~~L~~l~~  417 (519)
                      +.++.+|..|..+-++|++
T Consensus        79 D~d~~Vr~~a~~Ld~llkd   97 (97)
T PF12755_consen   79 DPDENVRSAAELLDRLLKD   97 (97)
T ss_pred             CCchhHHHHHHHHHHHhcC
Confidence            9999999988777766653

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.69  E-value=0.13  Score=48.77  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHhc----------------CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCC
Q 010064          278 PQAKQDALRALYNLSIFPSNISFILET----------------DLIRYLLEMLGD--------MELSERILSILSNLVST  333 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~~n~~~l~~~----------------g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~  333 (519)
                      ......++..|.||+........+++.                ..+..|+..+..        .+-......+|.||+..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            345667888999999887766654432                256666666622        12556788999999999


Q ss_pred             cccHHHHhhcCC-c--chhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH---cCcHHHHHHHhh
Q 010064          334 PEGRKAISRVPD-A--FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE---AGIASALLELTL  398 (519)
Q Consensus       334 ~e~r~~i~~~~g-~--i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~---~G~i~~Ll~Ll~  398 (519)
                      +++|+.+.+... .  +..|+-++.+ .+..-+.-++.+|.|+|..... ...++.   .+++|.|+--+.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~-~s~iRR~Gva~~IrNccFd~~~-H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEH-KSVIRRGGVAGTIRNCCFDTDS-HEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhcc-CcHHHHHHHHHHHHHhhccHhH-HHHhcCchhhhhHHHHHhhcc
Confidence            999999987432 2  5677777774 4777788899999999998444 444443   467777666666

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.47  E-value=2.4  Score=45.06  Aligned_cols=185  Identities=12%  Similarity=0.162  Sum_probs=117.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCChh---hHHHHHhcCcHHHHHHhhcCCCCC----CHHHHHHHHHHHHHhccCCC
Q 010064          179 LAGMLDFQLADSQISSLYALLNLGIGNDL---NKAAIVKAGAVHKMLKLIESPVAP----NPSVSEAIVANFLGLSALDS  251 (519)
Q Consensus       179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~---nk~~iv~aG~v~~Lv~lL~s~~~~----~~~~~~~a~~aL~~LS~~~~  251 (519)
                      +..++...+++-+.+|+.....++.+.+-   ||+.++++=+.+-+-+++.+.+.|    +.-.+..++.+|......++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            55667777778888888888888876443   588899997788888887665332    32334445555655555554


Q ss_pred             C--hhhhhhCCChHHHHHHhhcCCCCCCHH------HHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HH
Q 010064          252 N--KPIIGSSGAVPFLVKTLKNSDKKVSPQ------AKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LS  320 (519)
Q Consensus       252 ~--k~~I~~~gai~~LV~lL~~~~~~~~~~------~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~  320 (519)
                      .  .+.|+  ..||.|..++...   .+++      ...++-.+|+-++..+.....++..|+++.+.++-.-++   -.
T Consensus        96 lAsh~~~v--~~IP~llev~~~~---~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKG---IDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhc---CCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhH
Confidence            3  23332  3589999999876   3333      788999999999999889999999999999998763222   12


Q ss_pred             HHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHH
Q 010064          321 ERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMV  372 (519)
Q Consensus       321 ~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~n  372 (519)
                      .-++.++--++.    .++....+..   .|..+..-+. ..+...+-+.|.+|..
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~fla---li~~va~df~-~~~~a~KfElc~lL~~  222 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLA---LIAAVARDFA-VLHNALKFELCHLLSA  222 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHH---HHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            233333333332    3333333333   3444443333 2334455556666653

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.47  E-value=0.66  Score=46.75  Aligned_cols=221  Identities=18%  Similarity=0.135  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHHHHhc-CcHHHH
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAAIVKA-GAVHKM  221 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-G~v~~L  221 (519)
                      .-.+.-|+.++.++... ++.|..+.. .-+-..+++.++.  +..++|-..+-+++-|+.. +...+.|-+- ..+.-|
T Consensus       163 ~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence            34567788999998854 577776654 4566778888877  6788999999999999994 6666555443 567778


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh---CCChHHHHHHhhcCCCCCCHHHHHHHHHH-----------
Q 010064          222 LKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS---SGAVPFLVKTLKNSDKKVSPQAKQDALRA-----------  287 (519)
Q Consensus       222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~---~gai~~LV~lL~~~~~~~~~~~~~~A~~a-----------  287 (519)
                      +++.+...  ...+...+++++.++..- ..|..|-+   .|-+..-|++|... .=.+.+++.+.-..           
T Consensus       241 i~iVk~~~--keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~er-kysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         241 IAIVKERA--KEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLER-KYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhhhhh
Confidence            88877642  467778889999997652 22333332   34455566666543 11223332222111           


Q ss_pred             ------HHHh-----cCC---------CccHHHHHhc--CcHHHHHHHcC--CHH-HHHHHHHHHHHhcC-CcccHHHHh
Q 010064          288 ------LYNL-----SIF---------PSNISFILET--DLIRYLLEMLG--DME-LSERILSILSNLVS-TPEGRKAIS  341 (519)
Q Consensus       288 ------L~nL-----s~~---------~~n~~~l~~~--g~v~~Lv~lL~--~~~-v~~~Al~~L~nLs~-~~e~r~~i~  341 (519)
                            +..|     .-+         .+|...+.+.  ..+..|..++.  .+. +..-||.-+..+.. .||.+..+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence                  1111     101         1244555544  46777777773  233 44567777777777 899998888


Q ss_pred             hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064          342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA  374 (519)
Q Consensus       342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~  374 (519)
                      . -|+=..++++++ +++++++-+|..++..+.
T Consensus       397 K-yg~k~~im~L~n-h~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 K-YGVKEIIMNLIN-HDDDDVKFEALQALQTCI  427 (432)
T ss_pred             H-hhhHHHHHHHhc-CCCchhhHHHHHHHHHHH
Confidence            8 689999999999 678999999988876654

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=94.46  E-value=6.4  Score=41.19  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=97.9

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc--C--------CCHHHHHHHHHHHHHhc
Q 010064          134 LKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD--F--------QLADSQISSLYALLNLG  202 (519)
Q Consensus       134 l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~--s--------~~~~~~~~a~~aL~NLa  202 (519)
                      ...+++.|..+- ...+...+..++.|+++. ..-..+...--+..|+.+-+  +        .+-.+...++++|+|+.
T Consensus        47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk-~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv  125 (532)
T KOG4464|consen   47 GERIFEVLENGEPLTHRVVCLETVRILSRDK-DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV  125 (532)
T ss_pred             HHHHHHHHhcCCCchhhhhHHHHHHHHhccc-cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence            456777777665 456777888999999774 22221211112334444332  1        34578899999999999


Q ss_pred             CCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCC-Chhhh-hhCCChHHHHHHhhcCC-----
Q 010064          203 IGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDS-NKPII-GSSGAVPFLVKTLKNSD-----  273 (519)
Q Consensus       203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~-~k~~I-~~~gai~~LV~lL~~~~-----  273 (519)
                      .++...+....+...+-.+++.+.....  ..-++...-+..|+-|+.... .|..+ ...++++++.+++....     
T Consensus       126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse  205 (532)
T KOG4464|consen  126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE  205 (532)
T ss_pred             hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence            9999999999998777777765432200  012233334455555554443 34444 45788999999886541     


Q ss_pred             ---CC---CCHHHHHHHHHHHHHhcCCCc
Q 010064          274 ---KK---VSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       274 ---~~---~~~~~~~~A~~aL~nLs~~~~  296 (519)
                         +.   ........++.++.|++...+
T Consensus       206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~~  234 (532)
T KOG4464|consen  206 INVPPLNPQETNRACEALKVFFNVTCDSD  234 (532)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence               11   123355567777788876543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.29  E-value=1.2  Score=50.78  Aligned_cols=133  Identities=19%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~i  212 (519)
                      ++-+++.|+  +.-.+..|++++..++...-..-..-.-..+++.|..+++.....++...+.++-.|......+ ....
T Consensus       613 L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~  690 (1233)
T KOG1824|consen  613 LPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAEL  690 (1233)
T ss_pred             HHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            445555553  6667888999999888543222211111347888999998877778888888777776532111 2222


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS  272 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~  272 (519)
                      .++ ++.-|..++...   +..+.+.+...|..+.........-...-.++.++.+++++
T Consensus       691 ~e~-vL~el~~Lises---dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp  746 (1233)
T KOG1824|consen  691 LEA-VLVELPPLISES---DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP  746 (1233)
T ss_pred             HHH-HHHHhhhhhhHH---HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence            222 222233334333   56777778777777776655444434455677777777664

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.10  E-value=0.11  Score=45.13  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          345 DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       345 g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ..+..|+.+|..+.++.+..-||.=|..++...+..+..+-+.|+-..+++|+.++++.++..|..+++.+-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            456789999964567778888899999999887888888889999999999999999999999999999875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.04  E-value=2.1  Score=50.03  Aligned_cols=214  Identities=16%  Similarity=0.161  Sum_probs=121.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChhhHHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCC
Q 010064          185 FQLADSQISSLYALLNLGIGNDLNKAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSG  260 (519)
Q Consensus       185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~g  260 (519)
                      +.+..+|..+-..|..++.. +.........  .+...|..-+++.   +...+.....+|..|-...  +....+  ..
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~---~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k  738 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSS---SSPAQASRLKCLKRLLKLLSAEHCDLI--PK  738 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHhccHHHHHHH--HH
Confidence            35778899999999988875 4433332221  2344455555554   3444444444443332211  112211  11


Q ss_pred             ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC------cHHHHHHHc-----CCHHHHHHH-HHHHH
Q 010064          261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD------LIRYLLEML-----GDMELSERI-LSILS  328 (519)
Q Consensus       261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g------~v~~Lv~lL-----~~~~v~~~A-l~~L~  328 (519)
                      .||-++-.++.    .+...++.|..+|++|..    +....+.|      .|...+.++     ++......+ +-++.
T Consensus       739 ~I~EvIL~~Ke----~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~  810 (1176)
T KOG1248|consen  739 LIPEVILSLKE----VNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAIT  810 (1176)
T ss_pred             HHHHHHHhccc----ccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence            23333333344    789999999999999983    22222222      445555444     232211111 33444


Q ss_pred             HhcCCcccHHHHhhc---CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHH
Q 010064          329 NLVSTPEGRKAISRV---PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ  405 (519)
Q Consensus       329 nLs~~~e~r~~i~~~---~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~  405 (519)
                      .+...   -..+.+.   .+.+..+.-.|. +.++++...|+..+-.++..-++.+-.-...-++|.++.++.+.+..++
T Consensus       811 ~il~e---~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r  886 (1176)
T KOG1248|consen  811 HILQE---FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVR  886 (1176)
T ss_pred             HHHHH---HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence            44331   1112220   234555555666 6789999999999999998766544444455678999999888888888


Q ss_pred             HHHHHHHHHhh
Q 010064          406 KRASRILECLR  416 (519)
Q Consensus       406 ~~A~~~L~~l~  416 (519)
                      ..+.-+|..|.
T Consensus       887 ~Kvr~LlekLi  897 (1176)
T KOG1248|consen  887 KKVRLLLEKLI  897 (1176)
T ss_pred             HHHHHHHHHHH
Confidence            88777777665

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.68  E-value=0.23  Score=46.34  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             cHHHHHhcCcHHHHHHHcC-----------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064          297 NISFILETDLIRYLLEMLG-----------DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK  365 (519)
Q Consensus       297 n~~~l~~~g~v~~Lv~lL~-----------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~  365 (519)
                      -...+++.|++..|+.+|.           +.+....++.||..|..+..+...+...++++..|+..|. +.++.++..
T Consensus        99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~  177 (187)
T PF06371_consen   99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKL  177 (187)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHH
Confidence            3566788899999998882           2347788999999999999999999998999999999998 788999999


Q ss_pred             HHHHHHHHhc
Q 010064          366 ASYVLMVMAH  375 (519)
Q Consensus       366 A~~~L~nL~~  375 (519)
                      ++.+|..+|.
T Consensus       178 ~leiL~~lc~  187 (187)
T PF06371_consen  178 ALEILAALCL  187 (187)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999998883

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.66  E-value=4.2  Score=47.76  Aligned_cols=270  Identities=17%  Similarity=0.162  Sum_probs=152.9

Q ss_pred             cchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhc---
Q 010064          128 EEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG---  202 (519)
Q Consensus       128 ~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa---  202 (519)
                      .|++-.+..+..-+.. ...+.|..|+..|..|+..- .+.+-    .-++|.+|.++..+.+.+|..|+.+|..+.   
T Consensus       418 ~ga~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~V  493 (1431)
T KOG1240|consen  418 EGAVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALV  493 (1431)
T ss_pred             cceeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence            3443333444333332 25678899999999998652 23322    347999999999999999999988887765   


Q ss_pred             CCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc------------------cCCCCh---hhhhhC--
Q 010064          203 IGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS------------------ALDSNK---PIIGSS--  259 (519)
Q Consensus       203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS------------------~~~~~k---~~I~~~--  259 (519)
                      ..-++.-..|+-.-++|-|-.++.+..  ...++..-+..|..|+                  .++.+-   ..-...  
T Consensus       494 r~~~~~daniF~eYlfP~L~~l~~d~~--~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~  571 (1431)
T KOG1240|consen  494 RDIPPSDANIFPEYLFPHLNHLLNDSS--AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTE  571 (1431)
T ss_pred             cCCCcccchhhHhhhhhhhHhhhccCc--cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchH
Confidence            223444455555668888888887741  2223322222222222                  111111   110001  


Q ss_pred             -----CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc----CcHHHHHHHcCCHHHHHHH--HHHHH
Q 010064          260 -----GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET----DLIRYLLEMLGDMELSERI--LSILS  328 (519)
Q Consensus       260 -----gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~----g~v~~Lv~lL~~~~v~~~A--l~~L~  328 (519)
                           ..|..+|..|-..   .++-+++.-+..|.-||.      ++...    =.++.|+..|+|.+..-.+  ...+.
T Consensus       572 ~~~L~~~V~~~v~sLlsd---~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  572 LQALHHTVEQMVSSLLSD---SPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV  642 (1431)
T ss_pred             HHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc
Confidence                 1222233322221   344566666666655542      22221    2567777888776633322  22222


Q ss_pred             HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       329 nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                      -++..-..| . ++ +..+|.|.+-|. ...+.+...|.++|..|+...--.+..+.  .+++...-++.+++.-+|..+
T Consensus       643 gvsi~VG~r-s-~s-eyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~  716 (1431)
T KOG1240|consen  643 GVSIFVGWR-S-VS-EYLLPLLQQGLT-DGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAV  716 (1431)
T ss_pred             ceEEEEeee-e-HH-HHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHH
Confidence            222221111 1 22 356777777777 56788999999999999975322222333  355666778888999999998


Q ss_pred             HHHHHHhhhc
Q 010064          409 SRILECLRVD  418 (519)
Q Consensus       409 ~~~L~~l~~~  418 (519)
                      +.++.-....
T Consensus       717 ~~iI~~~~~~  726 (1431)
T KOG1240|consen  717 LGIIAAIARQ  726 (1431)
T ss_pred             HHHHHHHHhh
Confidence            8888777643

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.58  E-value=0.16  Score=49.29  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHhhc------CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHH
Q 010064          319 LSERILSILSNLVSTPEGRKAISRV------PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIAS  391 (519)
Q Consensus       319 v~~~Al~~L~nLs~~~e~r~~i~~~------~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~  391 (519)
                      -+..|+.+|+.|+..+.+-..+..+      +..+..|+++|...+++.++|.|+.+|.|||++++... ....+.+.|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            4667888888888876666666543      23566777778767889999999999999999977654 4556889999


Q ss_pred             HHHHHhhcCCHHHH
Q 010064          392 ALLELTLLGSTLAQ  405 (519)
Q Consensus       392 ~Ll~Ll~~gs~~~~  405 (519)
                      .|+.++......++
T Consensus       220 ~Li~FiE~a~~~~~  233 (257)
T PF12031_consen  220 HLIAFIEDAEQNAH  233 (257)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999987654443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.30  E-value=2.5  Score=41.79  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh
Q 010064          319 LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT  397 (519)
Q Consensus       319 v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll  397 (519)
                      ....|+.+|--++- ++..|..+.+ ...+..|+.+|..+..+.++..+..+|..+..+++.+...+.+.+++..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            44567888888887 8888888888 799999999996567789999999999999999899999999999999999999


Q ss_pred             hcC--CHHHHHHHHHHHHHhh
Q 010064          398 LLG--STLAQKRASRILECLR  416 (519)
Q Consensus       398 ~~g--s~~~~~~A~~~L~~l~  416 (519)
                      .+.  +..++-+....|-..-
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            975  4466666555555444

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.11  E-value=2.3  Score=41.98  Aligned_cols=219  Identities=16%  Similarity=0.201  Sum_probs=136.7

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC--H--HHH-HHHHHHHHHhcCCChhhHHH
Q 010064          145 SEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGML-------DFQL--A--DSQ-ISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL-------~s~~--~--~~~-~~a~~aL~NLa~~~~~nk~~  211 (519)
                      +++.|..|+..|..--...++..-.+.. -|.+..|++=+       ..+.  +  .-+ -.|+..|--+|. +++-|..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            6778888888887755444566666666 56666665422       2221  2  122 344445555666 5999999


Q ss_pred             HHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064          212 IVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA  287 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a  287 (519)
                      ++++.+.-.|.-+|.....  +-+.++-...+++..|...++.  -..+.+.+.+|..++.+..    ++.-.+.-|.-+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~----GselSKtvAtfI  162 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF----GSELSKTVATFI  162 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH----S-HHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh----ccHHHHHHHHHH
Confidence            9999886666666654311  1244566778888888865432  3344578999999999998    788899999999


Q ss_pred             HHHhcCCCccHHHHHhc--------CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh------h
Q 010064          288 LYNLSIFPSNISFILET--------DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRVPDAFPI------L  350 (519)
Q Consensus       288 L~nLs~~~~n~~~l~~~--------g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~------L  350 (519)
                      +..+-.++.....+.+.        .++..++.-+ .  ++.+.+..+++-..|+.++..|.++..   ++|.      +
T Consensus       163 lqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~---~LP~~Lrd~~f  239 (262)
T PF04078_consen  163 LQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ---CLPDQLRDGTF  239 (262)
T ss_dssp             HHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH---HS-GGGTSSTT
T ss_pred             HHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH---hCcHHHhcHHH
Confidence            99888776655444432        2333333333 2  334888999999999999999998876   2222      2


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHH
Q 010064          351 VDVLNWTDSPGCQEKASYVLMVM  373 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~nL  373 (519)
                      ..+++  +++.++..-...+.|+
T Consensus       240 ~~~l~--~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  240 SNILK--DDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             TTGGC--S-HHHHHHHHHHHHHT
T ss_pred             HHHHh--cCHHHHHHHHHHHHHh
Confidence            22333  3666766655555554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.93  E-value=5.3  Score=42.55  Aligned_cols=233  Identities=15%  Similarity=0.057  Sum_probs=133.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCHHHHHHhhcC-------CCHHHHHHHHHHHHHhcCCC
Q 010064          136 IVVKDLQSESEEQRREAASKVRSLAKENS---ETRVTLAMLGAIPPLAGMLDF-------QLADSQISSLYALLNLGIGN  205 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---~~r~~l~~~G~i~~Lv~lL~s-------~~~~~~~~a~~aL~NLa~~~  205 (519)
                      .+..++...+.+.|..|+-.+.++++.+.   .+|+.+.+.=+.+-+=++|.+       ++.-.+..+...|.-.|.. 
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence            35566677788888889999999998753   567667777777777788865       2233456666677777764 


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCCCC----HHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHH
Q 010064          206 DLNKAAIVKAGAVHKMLKLIESPVAPN----PSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAK  281 (519)
Q Consensus       206 ~~nk~~iv~aG~v~~Lv~lL~s~~~~~----~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~  281 (519)
                      ++-...=---..||.|.+++....++|    ..+.+.+-..|...+..+.....++..|+++.+-++-...  ... .-.
T Consensus        94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~--~~~-~d~  170 (698)
T KOG2611|consen   94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP--DGS-HDM  170 (698)
T ss_pred             hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC--CCc-hhH
Confidence            543222112256899999987654322    2256677778888888888888888999999999876553  122 222


Q ss_pred             HHHHHHHHHh----cCCCccHHHHHhcCcHHHHHHHc--CCHHHHHHHHHHHHHhcCCc-------ccHHHHhhcCCcch
Q 010064          282 QDALRALYNL----SIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTP-------EGRKAISRVPDAFP  348 (519)
Q Consensus       282 ~~A~~aL~nL----s~~~~n~~~l~~~g~v~~Lv~lL--~~~~v~~~Al~~L~nLs~~~-------e~r~~i~~~~g~i~  348 (519)
                      .-|+..|.-+    -+.++....+..-  |+.+..-+  .+...+.+.|.+|..+-..+       .-+..+.. .....
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~-~~l~~  247 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWA-DYLRT  247 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchH-HHHHH
Confidence            2333333222    2233333333221  22221111  12235667788877543321       12211221 12233


Q ss_pred             hhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064          349 ILVDVLNWTDSPGCQEKASYVLMVMAH  375 (519)
Q Consensus       349 ~Lv~lL~~s~~~~~qe~A~~~L~nL~~  375 (519)
                      -++.+|+..-.|.-+..|.....|+++
T Consensus       248 G~~~IL~~kv~p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  248 GVVAILQNKVAPSQRLPALILAANMMH  274 (698)
T ss_pred             HHHHHHhcccCchhcChHHHHHHHHHH
Confidence            455566533345555566666666665

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=92.80  E-value=0.78  Score=49.93  Aligned_cols=210  Identities=15%  Similarity=0.206  Sum_probs=125.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh--hhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGND--LNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--  250 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~--~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--  250 (519)
                      .|..++..|++..+.+++.|+.....|+.--.  ..-+.+.+.|.|  |.+-|...   .+++...++.+++.+-...  
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~---ypEvLgsil~Ai~~I~sv~~~  679 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED---YPEVLGSILKAICSIYSVHRF  679 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc---cHHHHHHHHHHHHHHhhhhcc
Confidence            35556678889999999999999888875211  112334445543  55666666   7888888877777665432  


Q ss_pred             -CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cH---HHH-HhcCcHHHHHHHcC--CHHHHHH
Q 010064          251 -SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NI---SFI-LETDLIRYLLEMLG--DMELSER  322 (519)
Q Consensus       251 -~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~---~~l-~~~g~v~~Lv~lL~--~~~v~~~  322 (519)
                       ..++.  -.|.+|.|..+|.+    ...++..+.+..++-++.+.. ..   .-+ +..+    |+.+|.  ..+++.+
T Consensus       680 ~~mqpP--i~~ilP~ltPILrn----kh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe----Lvd~Lks~nKeiRR~  749 (975)
T COG5181         680 RSMQPP--ISGILPSLTPILRN----KHQKVVANTIALVGTICMNSPEYIGVREWMRICFE----LVDSLKSWNKEIRRN  749 (975)
T ss_pred             cccCCc--hhhccccccHhhhh----hhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH----HHHHHHHhhHHHHHh
Confidence             22333  26889999999998    688899999999999987654 21   111 1222    444554  3458889


Q ss_pred             HHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH---HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc
Q 010064          323 ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG---CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL  399 (519)
Q Consensus       323 Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~---~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~  399 (519)
                      |..+++.++.      +|.- .+.+..|++-|+ .....   +...|..++..-|- +         ..++|.|+.=+..
T Consensus       750 A~~tfG~Is~------aiGP-qdvL~~LlnnLk-vqeRq~RvctsvaI~iVae~cg-p---------fsVlP~lm~dY~T  811 (975)
T COG5181         750 ATETFGCISR------AIGP-QDVLDILLNNLK-VQERQQRVCTSVAISIVAEYCG-P---------FSVLPTLMSDYET  811 (975)
T ss_pred             hhhhhhhHHh------hcCH-HHHHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcC-c---------hhhHHHHHhcccC
Confidence            9988888774      1211 233445555554 21111   11222333332221 1         1256666666666


Q ss_pred             CCHHHHHHHHHHHHHhhh
Q 010064          400 GSTLAQKRASRILECLRV  417 (519)
Q Consensus       400 gs~~~~~~A~~~L~~l~~  417 (519)
                      +...+|.-..++++.+-+
T Consensus       812 Pe~nVQnGvLkam~fmFe  829 (975)
T COG5181         812 PEANVQNGVLKAMCFMFE  829 (975)
T ss_pred             chhHHHHhHHHHHHHHHH
Confidence            666666666666665554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.66  E-value=6.4  Score=40.19  Aligned_cols=192  Identities=16%  Similarity=0.085  Sum_probs=106.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--ChhhH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIG--NDLNK  209 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~--~~~nk  209 (519)
                      +...+..|.......|..|+..|.++...... -..+..  .-++..+.+.++.+..+-+..|+.++.-++..  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            66677777777788888999888886655422 222221  23577788888877766666777766666654  34556


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHH---HHHHHhccCCCC-hhhhhhCCChH--HHHHHhhcCC------CCCC
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIV---ANFLGLSALDSN-KPIIGSSGAVP--FLVKTLKNSD------KKVS  277 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~---~aL~~LS~~~~~-k~~I~~~gai~--~LV~lL~~~~------~~~~  277 (519)
                      ..+++. ..|.|.+.+.+... +..++..++   +++..+...+.. -...  ...+.  +.....+...      ...+
T Consensus       124 ~ei~~~-~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  124 EEIFEE-LKPVLKRILTDSSA-SPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHHH-HHHHHHHHHhCCcc-chHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence            666664 78899998887633 445544443   334444443221 1100  11222  2222222210      0123


Q ss_pred             HHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHh
Q 010064          278 PQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNL  330 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nL  330 (519)
                      +.+...|+.+-.-|...-+ ....-.-...++.|..+|.++  +++..|-.+|.-|
T Consensus       200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll  255 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL  255 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            5677777766666654333 211122245688899998644  4666555444433

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.66  E-value=1.8  Score=46.60  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH
Q 010064          219 HKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI  298 (519)
Q Consensus       219 ~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~  298 (519)
                      ..+.+.+.++   +...+..+.-.|.++|.+......++...++..|.+++.++............+.++..+-.+.--.
T Consensus        86 ~~i~e~l~~~---~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   86 KRIMEILTEG---NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            4566777777   6777777888888999888877788888889999999988532234567777777777765544333


Q ss_pred             HHHHhcCcHHHHHHHcC----CHHHHHHHHHHHHHhcCCcc-cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064          299 SFILETDLIRYLLEMLG----DMELSERILSILSNLVSTPE-GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM  373 (519)
Q Consensus       299 ~~l~~~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~~~e-~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL  373 (519)
                      ...+...+|.....+..    +..+-..|+.+|.+++.... .++.+.. +--+..|+..|+ ..+..++..|...+..|
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~e-ev~i~~li~hlq-~~n~~i~~~aial~nal  240 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAE-EVPIETLIRHLQ-VSNQRIQTCAIALLNAL  240 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHh-cCcHHHHHHHHH-hcchHHHHHHHHHHHHH
Confidence            33344444444444442    22377789999999998555 4555555 678899999998 56788888888888888


Q ss_pred             hcCCh-hhHHHHH
Q 010064          374 AHKSY-GDRQAMI  385 (519)
Q Consensus       374 ~~~~~-~~~~~i~  385 (519)
                      ....+ +.|..+.
T Consensus       241 ~~~a~~~~R~~~~  253 (713)
T KOG2999|consen  241 FRKAPDDKRFEMA  253 (713)
T ss_pred             HhhCChHHHHHHH
Confidence            77633 3444444

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.60  E-value=0.41  Score=37.85  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 010064          320 SERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG  388 (519)
Q Consensus       320 ~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G  388 (519)
                      .+.|+++++|+++++.+...+.+ .+.++.++++...++...++.-|.++|+-++.. .+-++.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            35799999999998888887776 689999999998777788898899999888876 55566555554

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.59  E-value=0.84  Score=43.22  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHh----------------cCCHHHHHHhhcC------CCHHHHHHHHHHHHHhcC
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAM----------------LGAIPPLAGMLDF------QLADSQISSLYALLNLGI  203 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~----------------~G~i~~Lv~lL~s------~~~~~~~~a~~aL~NLa~  203 (519)
                      ...-..++..|.||++.+ .....+..                ...+..|+..+-.      ...+-....+.++.|++.
T Consensus         9 ~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             cchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            334456777888888765 33332322                1246666665533      234456778999999999


Q ss_pred             CChhhHHHHHhc--Cc--HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC---CChHHHHHHhh
Q 010064          204 GNDLNKAAIVKA--GA--VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS---GAVPFLVKTLK  270 (519)
Q Consensus       204 ~~~~nk~~iv~a--G~--v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~---gai~~LV~lL~  270 (519)
                       .++.|..+++.  +.  +..|+-++++.   +..-+.-++++|.|++.+.+....+...   +.+|.|+--|.
T Consensus        88 -~~~gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 -LPEGRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             -CHHHHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence             49999999975  45  78888888887   6777888999999999998887777663   45555544443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=92.30  E-value=7.1  Score=36.29  Aligned_cols=92  Identities=21%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc-HHHHHH
Q 010064          145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA-VHKMLK  223 (519)
Q Consensus       145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~-v~~Lv~  223 (519)
                      ++.+|..++.++..|+..-+..-+     ..++.+...|+++++.++..|+.+|.+|... +-.|.    .|- +..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKV----KGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cceee----hhhhhHHHHH
Confidence            467889999999998876544333     3578999999999999999999999999874 22221    133 377888


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064          224 LIESPVAPNPSVSEAIVANFLGLSAL  249 (519)
Q Consensus       224 lL~s~~~~~~~~~~~a~~aL~~LS~~  249 (519)
                      ++.++   ++.++..|...+..++..
T Consensus        71 ~l~D~---~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDE---NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCC---CHHHHHHHHHHHHHHHHh
Confidence            88887   899999999888888765

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.06  E-value=9.7  Score=40.06  Aligned_cols=108  Identities=10%  Similarity=0.191  Sum_probs=81.8

Q ss_pred             HHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCChHHHHHHhh-cCCCCCCHHHHHHHHHH
Q 010064          211 AIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGAVPFLVKTLK-NSDKKVSPQAKQDALRA  287 (519)
Q Consensus       211 ~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~gai~~LV~lL~-~~~~~~~~~~~~~A~~a  287 (519)
                      -+++ ...+..|..++++....-+.+...|+.++...-.+++. -..|.+.|.++.+++.+. .. -..+.++....-.+
T Consensus       100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~-i~~s~e~l~~lP~~  178 (379)
T PF06025_consen  100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKG-ILPSSEVLTSLPNV  178 (379)
T ss_pred             cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccC-CCCcHHHHHHHHHH
Confidence            3445 44566666677775433466777777778777666554 566667999999999888 32 23567788888888


Q ss_pred             HHHhcCCCccHHHHHhcCcHHHHHHHcCCHHH
Q 010064          288 LYNLSIFPSNISFILETDLIRYLLEMLGDMEL  319 (519)
Q Consensus       288 L~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v  319 (519)
                      |.-||.+......+.+.+.++.++.++.+++.
T Consensus       179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~  210 (379)
T PF06025_consen  179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSPDY  210 (379)
T ss_pred             HhHHhcCHHHHHHHHhcChHHHHHHHhCCHHH
Confidence            89999999999999999999999999988873

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.88  E-value=5.1  Score=41.85  Aligned_cols=266  Identities=18%  Similarity=0.169  Sum_probs=137.3

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCC-CHHHH-HHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSE-SEEQR-REAASKVRSLAKENSETRVTLAMLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~-~~~~~-~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L  179 (519)
                      ...|+..+..|.....+...+..++..|.   .+.+++.+... +.+.- ..++..+.-++.+. ..-..+...+.+..+
T Consensus        36 ~s~Rr~sll~La~K~~~~~Fr~~~ra~g~---~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~l~~~~~~~~ll  111 (361)
T PF07814_consen   36 SSVRRSSLLELASKCADPQFRRQFRAHGL---VKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMHLLLDRDSLRLL  111 (361)
T ss_pred             ccHHHHHHHHHHHHhCCHHHHHHHHHcCc---HHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchhhhhchhHHHHH
Confidence            34577777888888889999999999998   89999988543 33233 33444444555443 455545556667777


Q ss_pred             HHhhcCCCH-HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC------CCCCCHHHHHHHHHHHHHh------
Q 010064          180 AGMLDFQLA-DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES------PVAPNPSVSEAIVANFLGL------  246 (519)
Q Consensus       180 v~lL~s~~~-~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s------~~~~~~~~~~~a~~aL~~L------  246 (519)
                      +.+|..+.. +......      .. ...+-.++. ...+..+...+..      ...+...-+..+..++-.+      
T Consensus       112 ~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~~  183 (361)
T PF07814_consen  112 LKLLKVDKSLDVPSDSD------SS-RKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLRE  183 (361)
T ss_pred             HHHhccccccccccchh------hh-hhhhhhHHH-HHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHhh
Confidence            888872100 0000000      00 001111111 1111111111100      0000111122222222222      


Q ss_pred             --------ccC-CCChhhhhhCCChHHHHHHhhc----C--------CCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhc
Q 010064          247 --------SAL-DSNKPIIGSSGAVPFLVKTLKN----S--------DKKVSPQAKQDALRALYNLSIFP-SNISFILET  304 (519)
Q Consensus       247 --------S~~-~~~k~~I~~~gai~~LV~lL~~----~--------~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~  304 (519)
                              ... +..|+.+...|++..++.++..    .        ....+......++.+|-|.+... +|...++..
T Consensus       184 ~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~  263 (361)
T PF07814_consen  184 AGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLLSH  263 (361)
T ss_pred             cccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHHHh
Confidence                    111 1237777788999999999862    1        01122334556777777777654 477776654


Q ss_pred             --CcHHHHHHHc-C---C--HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhcc-------------CCCCHHH
Q 010064          305 --DLIRYLLEML-G---D--MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLN-------------WTDSPGC  362 (519)
Q Consensus       305 --g~v~~Lv~lL-~---~--~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~-------------~s~~~~~  362 (519)
                        +.++.+...+ .   +  ..+...++++|.||+. +++.+.++.. .+....+..+..             ....-+.
T Consensus       264 ~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s-~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~  342 (361)
T PF07814_consen  264 RSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS-PKLGQQLGLIVTSFFCVLSLPNYVPEESSFDI  342 (361)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh-hHhccchHHHHHhhcccccccccccccccchH
Confidence              3343333332 1   1  1256789999999998 6666666654 333332222211             0112345


Q ss_pred             HHHHHHHHHHHhcCChhh
Q 010064          363 QEKASYVLMVMAHKSYGD  380 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~~~  380 (519)
                      .-.+.+++.||+..++.+
T Consensus       343 ~IL~Lg~LINL~E~s~~n  360 (361)
T PF07814_consen  343 LILALGLLINLVEHSEAN  360 (361)
T ss_pred             HHHHHHhHHHheeeCccC
Confidence            566788888888765543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=91.80  E-value=2.9  Score=44.51  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=79.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-------------HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-------------KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVA  241 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-------------k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~  241 (519)
                      .+..|+.+|++  +++...++.++.-|..+.+..             |++++.. .+|.|++..+..   +...+..-.-
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~---~~~~k~~yL~  345 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEA---DDEIKSNYLT  345 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhc---ChhhHHHHHH
Confidence            45678888865  777788888888888763332             4445544 788888888876   5556776677


Q ss_pred             HHHHhccCCCChhhhh-h-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064          242 NFLGLSALDSNKPIIG-S-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP  295 (519)
Q Consensus       242 aL~~LS~~~~~k~~I~-~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~  295 (519)
                      +|.++-.+-+ +..+. + ...+|.|++.|..    .+.+++..++.+|..+....
T Consensus       346 ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~----~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  346 ALSHLLKNVP-KSVLLPELPTLLPLLLQSLSL----PDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHcC
Confidence            7777766544 33333 3 5689999999977    68889999999999988765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=91.67  E-value=20  Score=37.76  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-C---CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHH
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-F---QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM  221 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s---~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~L  221 (519)
                      ..+-..|+..+..+-..+|..-..+.+.|+++.++..+. .   ++.++....-.+|..||. |....+.+.+.+.++.+
T Consensus       123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~  201 (379)
T PF06025_consen  123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKL  201 (379)
T ss_pred             hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHH
Confidence            456677899999988888888888899999999999887 3   678888999999999999 69999999999999999


Q ss_pred             HHhhcCC
Q 010064          222 LKLIESP  228 (519)
Q Consensus       222 v~lL~s~  228 (519)
                      ++++.++
T Consensus       202 f~if~s~  208 (379)
T PF06025_consen  202 FEIFTSP  208 (379)
T ss_pred             HHHhCCH
Confidence            9988775

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.53  E-value=0.92  Score=37.98  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKMLKLIESPVAPNPSVSEAIVANFLG  245 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~  245 (519)
                      -++++++..+..++..++..|+.+|.|++..   .+..++.  ..+++.|.+++.++   ++.++..| ..|-+
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~---d~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADP---DENVRSAA-ELLDR   93 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC---chhHHHHH-HHHHH
Confidence            3789999999999999999999999999974   2334443  36889999999988   78887766 34433

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.43  E-value=0.56  Score=45.54  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHH
Q 010064          104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ-----SESEEQRREAASKVRSLAKENSETRVTLA-MLGAIP  177 (519)
Q Consensus       104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~-----s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~~G~i~  177 (519)
                      .|..++.+|++++..|.|.+.+...+-...++.++..|.     .++...++-|+..|.+|+..+....+.++ +.++|.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            356788899999999999988877777777777766663     45777889999999999998876665554 488999


Q ss_pred             HHHHhhcCCC
Q 010064          178 PLAGMLDFQL  187 (519)
Q Consensus       178 ~Lv~lL~s~~  187 (519)
                      .|+.+++...
T Consensus       220 ~Li~FiE~a~  229 (257)
T PF12031_consen  220 HLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.39  E-value=20  Score=40.48  Aligned_cols=68  Identities=21%  Similarity=0.158  Sum_probs=49.7

Q ss_pred             CHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC
Q 010064          175 AIPPLAGML----DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD  250 (519)
Q Consensus       175 ~i~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~  250 (519)
                      +..+++.+|    ++....+...++.++.+|...+.+.-..     ++..|--++.++   ...++-+|..+|-.++...
T Consensus       242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp---~~~lRfaAvRtLnkvAm~~  313 (865)
T KOG1078|consen  242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSP---KVALRFAAVRTLNKVAMKH  313 (865)
T ss_pred             chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCc---HHHHHHHHHHHHHHHHHhC
Confidence            344555444    4577889999999999998754432221     677777788888   7889999999998888554

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=91.26  E-value=1.8  Score=46.02  Aligned_cols=210  Identities=14%  Similarity=0.079  Sum_probs=107.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcC----CChh--h-HHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHH
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGI----GNDL--N-KAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLG  245 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~----~~~~--n-k~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~  245 (519)
                      .+...+...|.+..-..|+.++|++.|++.    +.+.  . ...+.. -.+..+++.- ....+ +..+...+..+|.|
T Consensus       433 ~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad-~dkV~~navraLgn  510 (728)
T KOG4535|consen  433 DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASAD-KDKVKSNAVRALGN  510 (728)
T ss_pred             HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhh-hhhhhhHHHHHHhh
Confidence            344555555655667789999999999872    1111  1 112211 1233333322 11111 45677777777777


Q ss_pred             hccCC----CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCcc--HHHHHhcCcHHHHHHHcCCH--
Q 010064          246 LSALD----SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSN--ISFILETDLIRYLLEMLGDM--  317 (519)
Q Consensus       246 LS~~~----~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n--~~~l~~~g~v~~Lv~lL~~~--  317 (519)
                      ++.--    +.-......|.+..++....-   ....+++-+|+.++.||..++.-  ...=....+++.|+.++.+.  
T Consensus       511 llQvlq~i~~~~~~e~~~~~~~~l~~~v~~---~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~N  587 (728)
T KOG4535|consen  511 LLQFLQPIEKPTFAEIIEESIQALISTVLT---EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKN  587 (728)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHhcccceec---ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhcc
Confidence            76421    111111123333333332222   26788999999999999987652  11111234677788887544  


Q ss_pred             -HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064          318 -ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL  396 (519)
Q Consensus       318 -~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L  396 (519)
                       +++..|..+|.--..-...-..+.   =.|..++..|.|+.     +..+.+.++.+.   .+++.+-+  +|..|+.+
T Consensus       588 FKVRi~AA~aL~vp~~re~~~d~~~---Lsw~~lv~aLi~s~-----~~v~f~eY~~~D---sl~~q~c~--av~hll~l  654 (728)
T KOG4535|consen  588 FKVRIRAAAALSVPGKREQYGDQYA---LSWNALVTALQKSE-----DTIDFLEYKYCD---SLRTQICQ--ALIHLLSL  654 (728)
T ss_pred             ceEeehhhhhhcCCCCcccchhHHh---HHHHHHHHHHHHHH-----HHHHHHHHHHHH---HHHHHHHH--HHHHHHHH
Confidence             477788877754332111111111   24556777776531     123455555542   23333322  34455555


Q ss_pred             hhcCC
Q 010064          397 TLLGS  401 (519)
Q Consensus       397 l~~gs  401 (519)
                      +.+.+
T Consensus       655 a~Ssd  659 (728)
T KOG4535|consen  655 ASSSD  659 (728)
T ss_pred             hhccc
Confidence            55433

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.21  E-value=2.9  Score=43.14  Aligned_cols=199  Identities=14%  Similarity=0.075  Sum_probs=138.1

Q ss_pred             HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH-----HHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA-----AIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANF  243 (519)
Q Consensus       171 ~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~-----~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL  243 (519)
                      ...+.+..|+..|..-+-+.+..++.+..|+.......+.     -+...  .++..|+.--.++     ++.-.+...|
T Consensus        73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~-----dial~~g~ml  147 (335)
T PF08569_consen   73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP-----DIALNCGDML  147 (335)
T ss_dssp             HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST-----TTHHHHHHHH
T ss_pred             HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc-----cccchHHHHH
Confidence            3456788899999888899999999999999876444432     23322  4566666655554     4444455566


Q ss_pred             HHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHHhc---CcHHHHHHHcCCHH-
Q 010064          244 LGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFILET---DLIRYLLEMLGDME-  318 (519)
Q Consensus       244 ~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~~~---g~v~~Lv~lL~~~~-  318 (519)
                      .....++.....|.....+..+.+.+..    .+.++..+|..++.-|-. +.......+..   ..+.....+|.+++ 
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY  223 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQL----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY  223 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTS----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcC----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence            6666666666677777788888888887    799999999999999754 44454555554   35666777787666 


Q ss_pred             -HHHHHHHHHHHhcCCcccHHHH---hhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064          319 -LSERILSILSNLVSTPEGRKAI---SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       319 -v~~~Al~~L~nLs~~~e~r~~i---~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~  379 (519)
                       ++..++..|+.|-.++.+...+   ++.+.-+..++.+|. +.+..+|-+|..+.-...+.+..
T Consensus       224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhCCCC
Confidence             7789999999999877776644   333567778888888 67889999998888877776543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=91.15  E-value=2.4  Score=38.68  Aligned_cols=146  Identities=16%  Similarity=0.094  Sum_probs=91.7

Q ss_pred             ChHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-Cccc
Q 010064          261 AVPFLVKTLKN-SDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEG  336 (519)
Q Consensus       261 ai~~LV~lL~~-~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~  336 (519)
                      -+..++.-|.. .   .+..++..++-++..+-  +..... ...-+-..+-.++.+.+  -...++.+|..|-. .++.
T Consensus         4 ~l~~lL~~L~~~~---~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    4 ELDTLLTSLDMLR---QPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCCHHHHHHHCTT---TSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHHhcccC---CCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence            35556665553 2   56678888888887773  112221 12222333334444433  45567777777766 6677


Q ss_pred             HHHHhhcCCcchhhhhhcc-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-CHH-HHHHHHHHHH
Q 010064          337 RKAISRVPDAFPILVDVLN-WTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-STL-AQKRASRILE  413 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~-~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s~~-~~~~A~~~L~  413 (519)
                      ...+...+|+.+.++.++. ...+...+..++.+|..=|.+  +.+...+...+++-|.+++..+ +.. +|.+|...|.
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            7777766899999999887 345778888888888776654  4455555555689999999654 455 6888877765


Q ss_pred             H
Q 010064          414 C  414 (519)
Q Consensus       414 ~  414 (519)
                      .
T Consensus       156 K  156 (157)
T PF11701_consen  156 K  156 (157)
T ss_dssp             H
T ss_pred             c
Confidence            4

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.03  E-value=5.2  Score=43.90  Aligned_cols=134  Identities=18%  Similarity=0.246  Sum_probs=83.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..++..-+ ++...|..|+..|....+.-++....     ++..++.+++.++..++..|...|-.+|.+++++-..+ 
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            556666544 67889999999999999888877775     57899999999999999999999999999876665544 


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                          +..|+++|++.   ++.-...+-.+|..|-..++       .+.+..|..-+... +.++..++..++..|.
T Consensus        98 ----aDvL~QlL~td---d~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   98 ----ADVLVQLLQTD---DPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESS-KSGDEQVRERALKFLR  158 (556)
T ss_dssp             ----HHHHHHHTT------HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH----HS-HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhcc---cHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhc-ccCchHHHHHHHHHHH
Confidence                67899999987   55555555555555432211       22333333333210 1146667777776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.02  E-value=6.6  Score=42.54  Aligned_cols=153  Identities=14%  Similarity=0.091  Sum_probs=103.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCH----HHHHHHHHHHHHhcCCChhhH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLA----DSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~----~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      ...+++.+.+++...|..|...+..++. ++.....+....++..|.+++.+++.    ++...++.++..+-.+.--..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            5678888999999999999999999995 56788888899999999999988554    455555555555442211000


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                       ..+....|-.+..+..-... +..+...|++.|-++...+. .+..+.+.--+..|+..++.    .+..++..|...|
T Consensus       164 -~~~~~~fV~~~a~~V~~~~~-~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~----~n~~i~~~aial~  237 (713)
T KOG2999|consen  164 -ESVSNDFVVSMASYVNAKRE-DANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV----SNQRIQTCAIALL  237 (713)
T ss_pred             -eecccHHHHHHHHHHhhhhh-cccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh----cchHHHHHHHHHH
Confidence             01111122223332221111 45677888888888877665 46666678889999999987    6888888877777


Q ss_pred             HHhcC
Q 010064          289 YNLSI  293 (519)
Q Consensus       289 ~nLs~  293 (519)
                      -.|..
T Consensus       238 nal~~  242 (713)
T KOG2999|consen  238 NALFR  242 (713)
T ss_pred             HHHHh
Confidence            66654

>PRK14707 hypothetical protein; Provisional

Probab=90.72  E-value=17  Score=45.57  Aligned_cols=257  Identities=19%  Similarity=0.144  Sum_probs=150.4

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcCCCHHH-HHHHHHHHHHhcCCChhhHH
Q 010064          134 LKIVVKDLQ-SESEEQRREAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDFQLADS-QISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       134 l~~Lv~~L~-s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~-~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +-..+..|+ -.+......|+..|.. +. .++..+..+-..++-..|=.+=+-++..+ +..+...-..|.. +..-..
T Consensus       249 va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~-d~~l~~  326 (2710)
T PRK14707        249 LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLAD-DPELCK  326 (2710)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhc-cHhhhh
Confidence            444555443 2333444555555554 55 44566666654444444444444455544 4444444444544 466555


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHH-HHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANF-LGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL-~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                      .+-..++-..|-.+.+-+   +..+...++-+| ..|..+++.+..+-..|.-..|-.+-+-.   +++.++..|...-.
T Consensus       327 ~~~~~~~~~~LNalsKWp---d~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp---~~~~c~~aa~~LA~  400 (2710)
T PRK14707        327 ALNARGLSTALNALSKWP---DNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWP---DTPVCAAAASALAE  400 (2710)
T ss_pred             ccchHHHHHHHHHhhcCC---CchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCC---CchHHHHHHHHHHH
Confidence            554455556666666766   555555444444 56888877777775566555554454443   55666665555556


Q ss_pred             HhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHH-HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHH
Q 010064          290 NLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILS-NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK  365 (519)
Q Consensus       290 nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~-nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~  365 (519)
                      .|..+.+-+.. ++...|..+++-|   .+.+++..+...|. .|+-+.+.++.+-- .++...|--+-+|.++|.+.+.
T Consensus       401 ~l~~d~~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p-~~va~~LnalSKWPd~p~c~~a  478 (2710)
T PRK14707        401 HVVDDLELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDP-INVTQALDALSKWPDTPICGQT  478 (2710)
T ss_pred             HhccChhhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcCh-HHHHHHHHHhhcCCCChhHHHH
Confidence            66655444443 4455555555555   24456655555554 34447777777765 3444455455578889988888


Q ss_pred             HHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCC
Q 010064          366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGS  401 (519)
Q Consensus       366 A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs  401 (519)
                      |-.+...|++. .+.++.+--.++...|-.|..-++
T Consensus       479 a~~La~~l~~~-~~l~~a~~~q~~~~~L~aLSK~Pd  513 (2710)
T PRK14707        479 ASALAARLAHE-RRLRKALKPQEVVIALHSLSKWPD  513 (2710)
T ss_pred             HHHHHHHhccc-HHHHhhcCHHHHHHHHHHhhcCCC
Confidence            88888888887 456777766677777777777665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=90.60  E-value=10  Score=44.78  Aligned_cols=232  Identities=16%  Similarity=0.085  Sum_probs=119.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcc---ChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChh--
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKE---NSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDL--  207 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~---~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~--  207 (519)
                      ++-+|.++.....++|..|+..|..+...   -+..-..+--.-.+|-|-.|+.+ ...-++..-+..|..||.....  
T Consensus       464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl  543 (1431)
T KOG1240|consen  464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL  543 (1431)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence            88889999989999999999998885422   22222223223344555455544 3334555555556555531111  


Q ss_pred             -hHHHHHhcCcHHHHHH-hhcCCCCCCH---HHHHHHHHHHHHhccCCC-C-hhhhhh---------------CCChHHH
Q 010064          208 -NKAAIVKAGAVHKMLK-LIESPVAPNP---SVSEAIVANFLGLSALDS-N-KPIIGS---------------SGAVPFL  265 (519)
Q Consensus       208 -nk~~iv~aG~v~~Lv~-lL~s~~~~~~---~~~~~a~~aL~~LS~~~~-~-k~~I~~---------------~gai~~L  265 (519)
                       ....+..+|....... -..... ++.   ++...+......|..+++ + |..+.+               .-.++.|
T Consensus       544 e~~q~~~~~g~~n~~nset~~~~~-~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshL  622 (1431)
T KOG1240|consen  544 ELTQELRQAGMLNDPNSETAPEQN-YNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHL  622 (1431)
T ss_pred             HHHHHHHhcccccCcccccccccc-cchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHH
Confidence             1111111222111111 000000 000   111111122222222222 1 222222               2235566


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHH-HHhh
Q 010064          266 VKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRK-AISR  342 (519)
Q Consensus       266 V~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~-~i~~  342 (519)
                      +..|+.    .+...+..-...+..++..-.  ..-++...+|-|.+-|.|.+  +...|+.+|..|....--++ .+.+
T Consensus       623 iTfLND----kDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~  696 (1431)
T KOG1240|consen  623 ITFLND----KDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD  696 (1431)
T ss_pred             HHHhcC----ccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH
Confidence            666655    466666655555555443211  11245567787888887765  88999999999987444444 3333


Q ss_pred             cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          343 VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       343 ~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                         .+....-+|- +.+.-++..++.++....+.
T Consensus       697 ---i~~~v~PlL~-hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  697 ---ILQDVLPLLC-HPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             ---HHHhhhhhee-CchHHHHHHHHHHHHHHHhh
Confidence               4555566677 46788999999988877654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.48  E-value=3.6  Score=38.17  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcC---------CCHHHHHHHHHHHHHhc
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDF---------QLADSQISSLYALLNLG  202 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s---------~~~~~~~~a~~aL~NLa  202 (519)
                      ....+++.|.+.....  ..+..|+...+.. ..--..|.+.||+..|+.+|..         .+...+..++.+|..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            4666777787665443  3444555433333 3445567788999999998853         45678899999999999


Q ss_pred             CCChhhHHHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          203 IGNDLNKAAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGL  246 (519)
Q Consensus       203 ~~~~~nk~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L  246 (519)
                      . +......++. .+++..|+..|.++   +..++..++-+|..+
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~---~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSP---NIKTRKLALEILAAL  185 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TT---SHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCC---CHHHHHHHHHHHHHH
Confidence            8 4777777776 58999999999988   899999888777655

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=90.23  E-value=2.7  Score=47.56  Aligned_cols=103  Identities=21%  Similarity=0.209  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ..+..+.+-|++.|+..|..|++.+..|=-  .+.-..     +++++.+++.++++.++..|+.++.++-.-   .+..
T Consensus        92 LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~-----~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l  161 (757)
T COG5096          92 LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN-----IIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDL  161 (757)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH-----HHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhh
Confidence            347778888899999999998888866542  233332     578999999999999999999999999743   4667


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      +.+.|.+..+..++.+.   ++.+..+|..+|..+-
T Consensus       162 ~~~~g~~~~l~~l~~D~---dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         162 YHELGLIDILKELVADS---DPIVIANALASLAEID  194 (757)
T ss_pred             hhcccHHHHHHHHhhCC---CchHHHHHHHHHHHhc
Confidence            88889999999999888   8999999888887764

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.16  E-value=8.2  Score=43.32  Aligned_cols=92  Identities=14%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             CCHHHHHHHHHHHHHhcCC-CccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhh
Q 010064          276 VSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILV  351 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv  351 (519)
                      .+.+-++.-+.+++..+.. ++     +.+.+|+.|+..|.|..  .....+..+...-. .|.-|..++.      .|+
T Consensus       371 ~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~  439 (948)
T KOG1058|consen  371 DNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE------KLL  439 (948)
T ss_pred             cchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHH
Confidence            4556688888888887753 32     33467889999997654  33344444443333 5666666655      344


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          352 DVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       352 ~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                      +-+..-.+.++.+.|+|+++.-|....
T Consensus       440 ~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  440 ETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HhhhhhcccccchhHHHHHHHHHhhhH
Confidence            444322356788889999999887744

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=89.89  E-value=0.52  Score=30.41  Aligned_cols=28  Identities=14%  Similarity=0.146  Sum_probs=25.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 010064          176 IPPLAGMLDFQLADSQISSLYALLNLGI  203 (519)
Q Consensus       176 i~~Lv~lL~s~~~~~~~~a~~aL~NLa~  203 (519)
                      +|.++++++++++++|..|+++|.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=89.79  E-value=11  Score=34.96  Aligned_cols=90  Identities=17%  Similarity=0.084  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCC-HHHHHH
Q 010064          103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGA-IPPLAG  181 (519)
Q Consensus       103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~-i~~Lv~  181 (519)
                      ..+..++.++..+...-++-  +  ..+   ++.+...|.++++.+|..|+..|..|...+. .+.    .|- +..++.
T Consensus         3 ~vR~n~i~~l~DL~~r~~~~--v--e~~---~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~----k~~l~~~~l~   70 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPNL--V--EPY---LPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKV----KGQLFSRILK   70 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcHH--H--HhH---HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eee----hhhhhHHHHH
Confidence            45666777776665433221  1  123   7888899999999999999999999886652 221    233 367778


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      +|..++++++..|...+..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88889999999999999999874

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.77  E-value=7.3  Score=44.31  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHH
Q 010064          185 FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPF  264 (519)
Q Consensus       185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~  264 (519)
                      .+.+.++-.+++.|..+... .+.+..+...+++...+..+++.   ++-+.-+|+..+..|+.-       -....+|.
T Consensus       738 d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~Lkde---dsyvyLnaI~gv~~Lcev-------y~e~il~d  806 (982)
T KOG4653|consen  738 DDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDE---DSYVYLNAIRGVVSLCEV-------YPEDILPD  806 (982)
T ss_pred             CCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhccc---CceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence            35566888899999999883 56677788889999999999998   777777777766665532       12334666


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCc--ccHHH
Q 010064          265 LVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTP--EGRKA  339 (519)
Q Consensus       265 LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~--e~r~~  339 (519)
                      |..--.+......++.+...-.++.++..... ....-. .-.+...+..+.+++  ++..+++.|++|+.-.  ..-..
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~  885 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF  885 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence            66633221111113334444466666553322 111111 133444455555555  6888999999998721  12223


Q ss_pred             HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc---CcHHHHHHHhhcC-CHHHHHHHHHHHHHh
Q 010064          340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GIASALLELTLLG-STLAQKRASRILECL  415 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~---G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l  415 (519)
                      +.+   ++..++.+..-.+++.+++.|+-++..+-++....--.+..+   .....+..+.... +..++..|+..|..+
T Consensus       886 ~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  886 FHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            333   566677777656788999999999998888744322222221   2333344444433 344555555555444


Q ss_pred             h
Q 010064          416 R  416 (519)
Q Consensus       416 ~  416 (519)
                      .
T Consensus       963 ~  963 (982)
T KOG4653|consen  963 Q  963 (982)
T ss_pred             H
Confidence            3

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=89.09  E-value=44  Score=38.52  Aligned_cols=220  Identities=15%  Similarity=0.135  Sum_probs=135.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHH--hcCcHH
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIV--KAGAVH  219 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv--~aG~v~  219 (519)
                      +..+..-..|.++|...+.....+...+-.  .+...+..+.. ..+-++..|+.+++--+..     ..+.  ..+++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~ild  533 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMILD  533 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHHHH
Confidence            344555557777777666443222222111  22333333332 4455677777777766621     1122  246778


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHH
Q 010064          220 KMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNIS  299 (519)
Q Consensus       220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~  299 (519)
                      .|+++....   +.++.....-+|......+.-.....++...|..+.++...  ..++.+...+-.++-.|+...+|..
T Consensus       534 ~L~qlas~~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~el~q~~~~~g  608 (1005)
T KOG2274|consen  534 GLLQLASKS---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY--SEDPQVASLAQDLFEELLQIAANYG  608 (1005)
T ss_pred             HHHHHcccc---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHHhhc
Confidence            888887665   56777766777777666665555555677889888877652  3677777777777777665333322


Q ss_pred             HHHhcCcHHHHHHHcCC------HHHHHHHHHHHHHhcC-C-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          300 FILETDLIRYLLEMLGD------MELSERILSILSNLVS-T-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       300 ~l~~~g~v~~Lv~lL~~------~~v~~~Al~~L~nLs~-~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                      . ...-.+|.|++.|..      .....-++.+|.-+.. . +.--+.+..  -++|++.+..-|+++......+..||.
T Consensus       609 ~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  609 P-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             c-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHH
Confidence            2 234578999999943      2356667777776665 2 233344444  388899888777888888888888888


Q ss_pred             HHhcCC
Q 010064          372 VMAHKS  377 (519)
Q Consensus       372 nL~~~~  377 (519)
                      .+...+
T Consensus       686 a~Is~~  691 (1005)
T KOG2274|consen  686 ALISVT  691 (1005)
T ss_pred             HHHhcC
Confidence            776543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=88.97  E-value=1  Score=35.64  Aligned_cols=62  Identities=19%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH---HHHHHHHHHHHhcCCcccHHHHhh
Q 010064          281 KQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME---LSERILSILSNLVSTPEGRKAISR  342 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~---v~~~Al~~L~nLs~~~e~r~~i~~  342 (519)
                      .+.|+||+.|++..+.....+.+.++++.++++....+   ++--|..+|.-++.+.++.+.+.+
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            56799999999998888888888899999999996543   777889999988989888887766

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=88.85  E-value=51  Score=38.11  Aligned_cols=234  Identities=21%  Similarity=0.192  Sum_probs=129.6

Q ss_pred             HhcchhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc----CCC----HHHHH
Q 010064          126 KKEEALEELKIVVKDLQS-----ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD----FQL----ADSQI  192 (519)
Q Consensus       126 ~~~g~~~~l~~Lv~~L~s-----~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~----s~~----~~~~~  192 (519)
                      .+.|+   +..+++.|.+     ...+.-...+..|+..++- ..+|+.+.+.|+++.|+..|.    .+.    +++-+
T Consensus       114 ~~~gG---L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  114 AECGG---LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             hcCCC---HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            34566   4444444432     2333444456666667765 599999999999999998884    233    45555


Q ss_pred             HHHHHHHHhcCCChhhHHHH------Hhc--------CcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCChhhhh
Q 010064          193 SSLYALLNLGIGNDLNKAAI------VKA--------GAVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNKPIIG  257 (519)
Q Consensus       193 ~a~~aL~NLa~~~~~nk~~i------v~a--------G~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k~~I~  257 (519)
                      ..+.++--|...  .+...+      ...        ..+..|++.+.++.. .++.+....+.+|-+|+...+.+.   
T Consensus       190 ~LL~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m---  264 (802)
T PF13764_consen  190 QLLEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM---  264 (802)
T ss_pred             HHHHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH---
Confidence            555555555432  221111      111        237777777765421 257778888888888887654332   


Q ss_pred             hCCChHHHHHHhhcC------CCCCCHHHHHHHHHHHHHhcCCC-------ccHHHHHhcCcHHHHHHHcC---------
Q 010064          258 SSGAVPFLVKTLKNS------DKKVSPQAKQDALRALYNLSIFP-------SNISFILETDLIRYLLEMLG---------  315 (519)
Q Consensus       258 ~~gai~~LV~lL~~~------~~~~~~~~~~~A~~aL~nLs~~~-------~n~~~l~~~g~v~~Lv~lL~---------  315 (519)
                           ..||+.+...      +.....+- ...+.++..++.+-       .-+..+++.|++...+..|.         
T Consensus       265 -----~~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~  338 (802)
T PF13764_consen  265 -----DALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNT  338 (802)
T ss_pred             -----HHHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccC
Confidence                 3333332221      11111111 12255555554321       14677889999998888771         


Q ss_pred             -CHHHH--------HHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcC
Q 010064          316 -DMELS--------ERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       316 -~~~v~--------~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~  376 (519)
                       ++++.        ..++.+|.-|+......+.++. ..++ .++..|... ....+=..|=-+|-.|+.+
T Consensus       339 ~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~-~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  339 DSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIA-EQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHH-hhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence             23333        3688999999985444444455 4566 444444322 2334444444445555543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.66  E-value=32  Score=38.31  Aligned_cols=169  Identities=15%  Similarity=0.095  Sum_probs=101.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh---cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM---LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~---~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      .+..+..-+.+.+--|+..||.+.++..-+-..+-.   ...+..++..+. .++..+..++++|.|+..+ +-+++.+.
T Consensus       549 ~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~  626 (745)
T KOG0301|consen  549 ALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFM  626 (745)
T ss_pred             HHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHH
Confidence            334444556777888999999988775433333221   224555555554 6688899999999999995 77776665


Q ss_pred             hc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcC-CCCCCHHHHHHHHHHH
Q 010064          214 KA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNS-DKKVSPQAKQDALRAL  288 (519)
Q Consensus       214 ~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~-~~~~~~~~~~~A~~aL  288 (519)
                      ..  -++..+++.-..+   +..++.+.+...+|+|..  ..+    .+.+..+.|..++... .+..+.++.-.++.||
T Consensus       627 s~~~~i~~~~~~~~s~~---~knl~ia~atlaln~sv~l~~~~----~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al  699 (745)
T KOG0301|consen  627 SRLESILDPVIEASSLS---NKNLQIALATLALNYSVLLIQDN----EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVAL  699 (745)
T ss_pred             HHHHHHhhhhhhhhccc---chhHHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            54  2222232222222   455555555455555532  111    1245566665555442 1224555677788999


Q ss_pred             HHhcCCCccHHHHHhcCcHHHHHHHc
Q 010064          289 YNLSIFPSNISFILETDLIRYLLEML  314 (519)
Q Consensus       289 ~nLs~~~~n~~~l~~~g~v~~Lv~lL  314 (519)
                      .+|+..+.....+...--+..+..-+
T Consensus       700 gtL~t~~~~~~~~A~~~~v~sia~~~  725 (745)
T KOG0301|consen  700 GTLMTVDASVIQLAKNRSVDSIAKKL  725 (745)
T ss_pred             HhhccccHHHHHHHHhcCHHHHHHHH
Confidence            99998888777777666666666655

>PRK14707 hypothetical protein; Provisional

Probab=88.52  E-value=28  Score=43.70  Aligned_cols=264  Identities=16%  Similarity=0.156  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064          144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML  222 (519)
Q Consensus       144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv  222 (519)
                      ++.+.+..+......++.++ ..+..+-..|+...|=.+-+- +++.++..+...-.-|+.+ ..-+..+-..|+-..|-
T Consensus       177 ~~~~c~~aa~~la~~~~~~d-~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~~~q~va~~lN  254 (2710)
T PRK14707        177 DNPDCQAVAPRFAALVASDD-RLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRNELKPQELGNALN  254 (2710)
T ss_pred             CCchHHHHHHHHHHHhcCCh-hhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhCChHHHHHHHH
Confidence            45566666666666777665 666666444444444333343 6677777776666666664 55565555567777777


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHH-hccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHH
Q 010064          223 KLIESPVAPNPSVSEAIVANFLG-LSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFI  301 (519)
Q Consensus       223 ~lL~s~~~~~~~~~~~a~~aL~~-LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l  301 (519)
                      .+.+-+   +......++.+|.. |+.+...+..+-..+.-..|-.+-+-.   ....++..|...-..|...++.++. 
T Consensus       255 ~lsKwp---~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwp---d~~vc~~Aa~~la~rl~~d~~l~~~-  327 (2710)
T PRK14707        255 ALSKWA---DTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWA---DLPVCAEAAIALAERLADDPELCKA-  327 (2710)
T ss_pred             HHhcCC---CchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCC---CchHHHHHHHHHHHHHhccHhhhhc-
Confidence            777777   66666666666654 654444455443343333333333332   4555666666666777765554433 


Q ss_pred             HhcCcHHHHHHHc-C--CHHHHHH-HHHHHHHhcCCcccHHHHhhcCCcchhhhh-hccCCCCHHHHHHHHHHHHHHhcC
Q 010064          302 LETDLIRYLLEML-G--DMELSER-ILSILSNLVSTPEGRKAISRVPDAFPILVD-VLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       302 ~~~g~v~~Lv~lL-~--~~~v~~~-Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~-lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      ++.-.+..+++-| +  |..++.. |..+-.-|+.+++.++.+-. . ++...+. +-+|++++.|...|..+-..|..+
T Consensus       328 ~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q-~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d  405 (2710)
T PRK14707        328 LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-Q-GVSSVLNALSKWPDTPVCAAAASALAEHVVDD  405 (2710)
T ss_pred             cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-h-HHHHHHhhhhcCCCchHHHHHHHHHHHHhccC
Confidence            2333344444444 2  3334444 44444456668888887765 2 4444444 457888888887777777777755


Q ss_pred             ChhhHHHHHHcCcHHHHHHHhhcCCH-HHHHHHHHHHHHhhhcC
Q 010064          377 SYGDRQAMIEAGIASALLELTLLGST-LAQKRASRILECLRVDK  419 (519)
Q Consensus       377 ~~~~~~~i~~~G~i~~Ll~Ll~~gs~-~~~~~A~~~L~~l~~~~  419 (519)
                       .+.++.+-..|+-..|=.|..=++. .....|..+=..+..|.
T Consensus       406 -~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~  448 (2710)
T PRK14707        406 -LELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDT  448 (2710)
T ss_pred             -hhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccH
Confidence             6777777777766666666554433 33444444444444443

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=88.15  E-value=8.8  Score=43.86  Aligned_cols=250  Identities=15%  Similarity=0.103  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHhccC-hhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064          147 EQRREAASKVRSLAKEN-SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI  225 (519)
Q Consensus       147 ~~~~~Aa~~L~~La~~~-~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL  225 (519)
                      +.+..++.-...++... ......+...-.+|.+-.++...+..++...+..+.++.--.+  +..-+. -.+|.++..+
T Consensus       370 e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~-~llp~~~~~l  446 (759)
T KOG0211|consen  370 EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTIS-ELLPLLIGNL  446 (759)
T ss_pred             hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCcc-ccChhhhhhc
Confidence            34444444444444321 1222333334445555555556666666666666666553322  111111 2456677777


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhccCCC-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 010064          226 ESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET  304 (519)
Q Consensus       226 ~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~  304 (519)
                      ++.   .+.++.+....+..+-...+ .-....++-.+|.++.+-..    ....++...++.+..++.... ..++.+.
T Consensus       447 ~de---~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d----~~wRvr~ail~~ip~la~q~~-~~~~~~~  518 (759)
T KOG0211|consen  447 KDE---DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED----LLWRVRLAILEYIPQLALQLG-VEFFDEK  518 (759)
T ss_pred             chh---hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc----hhHHHHHHHHHHHHHHHHhhh-hHHhhHH
Confidence            777   78888877765544333222 23333455667777776544    456777778888777775443 2222222


Q ss_pred             CcHHHHH-HHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH
Q 010064          305 DLIRYLL-EMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR  381 (519)
Q Consensus       305 g~v~~Lv-~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~  381 (519)
                        ...++ .-+.+.  .+.+.|...|..++..-...... .  ..++.++.+.. .++-..+...+..+.-|+   +-.-
T Consensus       519 --~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~-q~~y~~R~t~l~si~~la---~v~g  589 (759)
T KOG0211|consen  519 --LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDL-QDNYLVRMTTLFSIHELA---EVLG  589 (759)
T ss_pred             --HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhc-CcccchhhHHHHHHHHHH---HHhc
Confidence              22222 222222  48888888888887622211211 2  24555555554 223334444444444333   2223


Q ss_pred             HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          382 QAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       382 ~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +.+...-.+|.+..+..+..+.+|-.+++.|..+.
T Consensus       590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~  624 (759)
T KOG0211|consen  590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL  624 (759)
T ss_pred             cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence            44556667899999999999999999999998887

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.98  E-value=4.1  Score=46.55  Aligned_cols=150  Identities=17%  Similarity=0.192  Sum_probs=96.2

Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      |++++. .++|.|++.+...   ....+..-.-+|.+.-.+-+ ++.+..  ...+|.|++.|.-    .+..++..++.
T Consensus       861 kQRfF~-~ivP~l~~~~~t~---~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~----~D~~v~vstl~  931 (1030)
T KOG1967|consen  861 KQRFFC-DIVPILVSKFETA---PGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSM----PDVIVRVSTLR  931 (1030)
T ss_pred             HHHHHH-hhHHHHHHHhccC---CccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCC----CccchhhhHhh
Confidence            344433 4899999988854   34444444445555433322 344432  5667888888876    68888899999


Q ss_pred             HHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH-----HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCH
Q 010064          287 ALYNLSIFPSNISFILETDLIRYLLEMLGDME-----LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSP  360 (519)
Q Consensus       287 aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~-----v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~  360 (519)
                      ++.-+..-.......--.-.||.|+.+-.+++     +++-|+.+|..|.. .|-..-.-.. +.++..|...|. +...
T Consensus       932 ~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~Ld-DkKR 1009 (1030)
T KOG1967|consen  932 TIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILD-DKKR 1009 (1030)
T ss_pred             hhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccC-cHHH
Confidence            88877654332222112345677776664433     78999999999998 5443333333 568889999998 5567


Q ss_pred             HHHHHHHHH
Q 010064          361 GCQEKASYV  369 (519)
Q Consensus       361 ~~qe~A~~~  369 (519)
                      .++++|+.+
T Consensus      1010 lVR~eAv~t 1018 (1030)
T KOG1967|consen 1010 LVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHH
Confidence            788888755

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.85  E-value=4.4  Score=45.60  Aligned_cols=167  Identities=17%  Similarity=0.171  Sum_probs=105.8

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCC
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSG  260 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~g  260 (519)
                      .+|.+.++.+..+++.+.+.+|-.+ ++      ..++.+|+++|.++    ..++.-.+..+..++...  +..     
T Consensus       294 pLl~S~n~sVVmA~aql~y~lAP~~-~~------~~i~kaLvrLLrs~----~~vqyvvL~nIa~~s~~~--~~l-----  355 (968)
T KOG1060|consen  294 PLLQSRNPSVVMAVAQLFYHLAPKN-QV------TKIAKALVRLLRSN----REVQYVVLQNIATISIKR--PTL-----  355 (968)
T ss_pred             HHHhcCCcHHHHHHHhHHHhhCCHH-HH------HHHHHHHHHHHhcC----CcchhhhHHHHHHHHhcc--hhh-----
Confidence            3556788999999999999999742 21      23589999999986    677777767777776431  111     


Q ss_pred             ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHH
Q 010064          261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRK  338 (519)
Q Consensus       261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~  338 (519)
                      +-|.+-...-.  ..+..+++..=+..|.||+... |+..+     ++-|...+.+++  +...++.+|+..+..   ..
T Consensus       356 F~P~lKsFfv~--ssDp~~vk~lKleiLs~La~es-ni~~I-----LrE~q~YI~s~d~~faa~aV~AiGrCA~~---~~  424 (968)
T KOG1060|consen  356 FEPHLKSFFVR--SSDPTQVKILKLEILSNLANES-NISEI-----LRELQTYIKSSDRSFAAAAVKAIGRCASR---IG  424 (968)
T ss_pred             hhhhhhceEee--cCCHHHHHHHHHHHHHHHhhhc-cHHHH-----HHHHHHHHhcCchhHHHHHHHHHHHHHHh---hC
Confidence            23444443322  1256667777778888887543 33222     334444554444  666777777765541   12


Q ss_pred             HHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064          339 AISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       339 ~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~  379 (519)
                      .+.+  .++..|+.+|. +.+..+..+++..+-.|.+..+.
T Consensus       425 sv~~--tCL~gLv~Lls-shde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  425 SVTD--TCLNGLVQLLS-SHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             chhh--HHHHHHHHHHh-cccchhHHHHHHHHHHHHhhChH
Confidence            2333  47788899998 45777777788888888776553

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=87.75  E-value=29  Score=33.87  Aligned_cols=204  Identities=14%  Similarity=0.111  Sum_probs=115.6

Q ss_pred             HHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChh
Q 010064          176 IPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP  254 (519)
Q Consensus       176 i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~  254 (519)
                      ++.|+. .-+..++..+...+++|..++.++..+...     ++..|..+...+   +......+...+..+-... .+.
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~---~~~~~~~~~rLl~~lw~~~-~r~   72 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQG---SLELRYVALRLLTLLWKAN-DRH   72 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCC---chhHHHHHHHHHHHHHHhC-chH
Confidence            344544 445688999999999999999963122222     456666666666   4555444444444443322 221


Q ss_pred             hhhhCCChHHHHHH-----hhc-CCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc-CCH--HHHHHHHH
Q 010064          255 IIGSSGAVPFLVKT-----LKN-SDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML-GDM--ELSERILS  325 (519)
Q Consensus       255 ~I~~~gai~~LV~l-----L~~-~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL-~~~--~v~~~Al~  325 (519)
                      .    +.+..++..     ... .......+.......+++.++....+    .-...++.+..+| ++.  .++..++.
T Consensus        73 f----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale  144 (234)
T PF12530_consen   73 F----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALE  144 (234)
T ss_pred             H----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            1    223322222     000 01234555666667788888876554    2224566777777 433  27778888


Q ss_pred             HHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCC
Q 010064          326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGS  401 (519)
Q Consensus       326 ~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs  401 (519)
                      .|..|+     ...+++....|..+..-|.....|.+...-+..+..+.++.-+.. -......++..|.++....+
T Consensus       145 ~l~~Lc-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  145 ALAPLC-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHH-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            888887     344444445666676666645567777666666665555433322 23345566666666666544

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.56  E-value=0.51  Score=49.92  Aligned_cols=99  Identities=21%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHH----HHHhcCcHHHHHHHcC---CHHHHHHHHHHHHHhcCCcccHHH--HhhcCCc
Q 010064          276 VSPQAKQDALRALYNLSIFPSNIS----FILETDLIRYLLEMLG---DMELSERILSILSNLVSTPEGRKA--ISRVPDA  346 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~n~~----~l~~~g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~~~e~r~~--i~~~~g~  346 (519)
                      ...+++.+|+.+|.|+...-+...    ..+..+.+..++.-..   ..+++.+||.+++||..++..+-+  =.. +.+
T Consensus       496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA-~~~  574 (728)
T KOG4535|consen  496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWA-SQA  574 (728)
T ss_pred             hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCch-HHH
Confidence            456788888888888864322111    1122233333332221   234889999999999987654221  123 457


Q ss_pred             chhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064          347 FPILVDVLNWTDSPGCQEKASYVLMVMAH  375 (519)
Q Consensus       347 i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~  375 (519)
                      ++.|..++....|-+++..|+.+|..-..
T Consensus       575 F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  575 FNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            88999998877889999999998876554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.79  E-value=3  Score=40.14  Aligned_cols=146  Identities=16%  Similarity=0.090  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCChhhH-HHHHhcCcHHH
Q 010064          147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----QLADSQISSLYALLNLGIGNDLNK-AAIVKAGAVHK  220 (519)
Q Consensus       147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----~~~~~~~~a~~aL~NLa~~~~~nk-~~iv~aG~v~~  220 (519)
                      ...+.|+..|.-++.+ ++.|..+.+.-+--.|..+|..     .-+-++..++..+..|..++++.- ..+....+||.
T Consensus       115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            3457788888888855 6899888876655455555532     334588899999999998755554 44455789999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--------CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          221 MLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--------SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       221 Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--------~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      +++++..+   ++..+..++-++-.+-.++..-..|.+        ...+..++.-+-+.   ++......++++-.+|+
T Consensus       194 cLrIme~g---SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~---~~~RLlKh~iRcYlRLs  267 (315)
T COG5209         194 CLRIMELG---SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSL---GSTRLLKHAIRCYLRLS  267 (315)
T ss_pred             HHHHHHhh---hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHheeec
Confidence            99999998   555555555555445555554444332        11222333323222   56666666777666666


Q ss_pred             CCCccHH
Q 010064          293 IFPSNIS  299 (519)
Q Consensus       293 ~~~~n~~  299 (519)
                      ..+..+.
T Consensus       268 d~p~aR~  274 (315)
T COG5209         268 DKPHARA  274 (315)
T ss_pred             CCHhHHH
Confidence            6655443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=86.27  E-value=6.5  Score=44.77  Aligned_cols=181  Identities=15%  Similarity=0.105  Sum_probs=119.8

Q ss_pred             HHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChH--HHHHHhhcCCC
Q 010064          197 ALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVP--FLVKTLKNSDK  274 (519)
Q Consensus       197 aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~--~LV~lL~~~~~  274 (519)
                      +|+++...++++-+.+++.|++..+..+++.-.  +.+.+..+.+.+.+++.-.+.+....-...+.  ..-.++..-  
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~--~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w--  569 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD--NEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW--  569 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--
Confidence            788999999999999999999999999998652  67888899999999987766655443322222  222233331  


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHH-HHhhcCCcchh-hh
Q 010064          275 KVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRK-AISRVPDAFPI-LV  351 (519)
Q Consensus       275 ~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~-~i~~~~g~i~~-Lv  351 (519)
                       ...+.--.|+..|+.+..+.+.   ..             .......+...+..... .+.... .+.+  ..+.. +.
T Consensus       570 -~~~ersY~~~siLa~ll~~~~~---~~-------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~--~~f~~~~~  630 (699)
T KOG3665|consen  570 -DSIERSYNAASILALLLSDSEK---TT-------------ECVFRNSVNELLVEAISRWLTSEIRVIND--RSFFPRIL  630 (699)
T ss_pred             -chhhHHHHHHHHHHHHHhCCCc---Cc-------------cccchHHHHHHHHHHhhccCccceeehhh--hhcchhHH
Confidence             3336777788888877665433   00             11122233333332222 222222 2223  23333 66


Q ss_pred             hhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC
Q 010064          352 DVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG  400 (519)
Q Consensus       352 ~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g  400 (519)
                      .++..+..+..+-.|+|++.++++..+++++.+.+.|+++.+..+-...
T Consensus       631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (699)
T KOG3665|consen  631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLS  679 (699)
T ss_pred             HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhH
Confidence            6666567788999999999999999888999999999999887765543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=86.24  E-value=8.8  Score=43.98  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=97.8

Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Cc
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--MELSERILSILSNLVS-TP  334 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~  334 (519)
                      ...+|.|++.+..    .+...+..-+.+|.++..+-.-...+-+. ..+|-|++.|+-  ..++..++.++.-+.. .+
T Consensus       866 ~~ivP~l~~~~~t----~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  866 CDIVPILVSKFET----APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HhhHHHHHHHhcc----CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            4678999988875    56677888888998887754432222232 456667777754  4466777777766654 34


Q ss_pred             ccHHHHhhcCCcchhhhhhccCCCC--HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          335 EGRKAISRVPDAFPILVDVLNWTDS--PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       335 e~r~~i~~~~g~i~~Lv~lL~~s~~--~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      .-...-+++  .+|.++.+=...++  ..+++.|..+|..|+..-+-..-.-.+..++.+|...+.+..-.+|+.|...=
T Consensus       942 tL~t~~~~T--lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  942 TLQTEHLST--LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             ccchHHHhH--HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            344444443  77777777663333  57889999999999984333332333455677888888887777888877653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=86.07  E-value=1.5  Score=28.16  Aligned_cols=29  Identities=21%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          389 IASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       389 ~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ++|.+++++.++++.+|..|...|..+.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=15  Score=41.34  Aligned_cols=62  Identities=16%  Similarity=0.091  Sum_probs=35.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLN  200 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~N  200 (519)
                      ++.+.+.|.+.+.-+|.+|.-+|..+-+...   ..+  .++-+.+-.+|. ..++.++.+|...|..
T Consensus       136 ~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDapeLi~~fL~~e~DpsCkRNAFi~L~~  198 (948)
T KOG1058|consen  136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAPELIESFLLTEQDPSCKRNAFLMLFT  198 (948)
T ss_pred             HHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence            5666678888888899988887777665421   111  112233334443 3556666666555543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.31  E-value=74  Score=37.11  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHhc---cChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHH
Q 010064          146 EEQRREAASKVRSLAK---ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKML  222 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~---~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv  222 (519)
                      .-.+.-|+..+..|+.   .+..++..+ +.=.++.++..++++..-++..|+|.+..++.-+=.+...+  ..++....
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~  508 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTH  508 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHH
Confidence            3445567777766552   233455444 33356677778888999999999999999993222222222  23566667


Q ss_pred             Hhhc-CCCCCCHHHHHHHHHHHHHh-ccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH
Q 010064          223 KLIE-SPVAPNPSVSEAIVANFLGL-SALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI  298 (519)
Q Consensus       223 ~lL~-s~~~~~~~~~~~a~~aL~~L-S~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~  298 (519)
                      .+|. +.   +..++-.|+-+|..+ +..+.++..+..  .+.+..|+.+.+.    .+.+........+.  +..++..
T Consensus       509 ~~l~~d~---~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne----~End~Lt~vme~iV--~~fseEl  579 (1010)
T KOG1991|consen  509 NCLLNDN---ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE----VENDDLTNVMEKIV--CKFSEEL  579 (1010)
T ss_pred             HHhccCC---cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh----cchhHHHHHHHHHH--HHHHHhh
Confidence            7777 44   577777777777654 444445555533  3444455555554    33333333333321  1111111


Q ss_pred             HHH---HhcCcHHHHHHHcCC--------HHHHHHHHHHHHHhcC---CcccHHHHhh-c-CCcchhhhhhccCCCCHHH
Q 010064          299 SFI---LETDLIRYLLEMLGD--------MELSERILSILSNLVS---TPEGRKAISR-V-PDAFPILVDVLNWTDSPGC  362 (519)
Q Consensus       299 ~~l---~~~g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~---~~e~r~~i~~-~-~g~i~~Lv~lL~~s~~~~~  362 (519)
                      ..+   +.........+++.+        .+=+..|.++|.-+..   +-+....+.. - +-+++.+-.+|. ++-.+.
T Consensus       580 sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~-~~i~df  658 (1010)
T KOG1991|consen  580 SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILK-NDITDF  658 (1010)
T ss_pred             chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence            111   112333344444421        1122234444443332   2222222221 0 124455555565 455677


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          363 QEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      -+++..++.+++..+++-.-.|+  |..+.+.+.+......--....-+|.|+.
T Consensus       659 yeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~v  710 (1010)
T KOG1991|consen  659 YEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYV  710 (1010)
T ss_pred             HHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhe
Confidence            78888888888876543322333  24556666666655555556666677665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.03  E-value=39  Score=38.92  Aligned_cols=122  Identities=22%  Similarity=0.223  Sum_probs=84.1

Q ss_pred             HHHHHhcCcHHHHHHHcC----------CHHHHHHHHHHHHHhcCCcccHHHHhhc-------CCcchhhhhhccCC---
Q 010064          298 ISFILETDLIRYLLEMLG----------DMELSERILSILSNLVSTPEGRKAISRV-------PDAFPILVDVLNWT---  357 (519)
Q Consensus       298 ~~~l~~~g~v~~Lv~lL~----------~~~v~~~Al~~L~nLs~~~e~r~~i~~~-------~g~i~~Lv~lL~~s---  357 (519)
                      ...++..+++..++.+..          -.++...|+.+|.-+...|..+.++...       ..+|..|+..-..+   
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i  673 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI  673 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence            344566677777777662          1347788999999988899999887631       23566666554311   


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhH-----------------------------------HHHHHcCcHHHHHHHhhcCC-
Q 010064          358 DSPGCQEKASYVLMVMAHKSYGDR-----------------------------------QAMIEAGIASALLELTLLGS-  401 (519)
Q Consensus       358 ~~~~~qe~A~~~L~nL~~~~~~~~-----------------------------------~~i~~~G~i~~Ll~Ll~~gs-  401 (519)
                      .+|+++..|..++.|+...++.++                                   ..+....+|..|+.|+.... 
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP  753 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence            378999999999999877653221                                   12233678999999998543 


Q ss_pred             ----HHHHHHHHHHHHHhhhcC
Q 010064          402 ----TLAQKRASRILECLRVDK  419 (519)
Q Consensus       402 ----~~~~~~A~~~L~~l~~~~  419 (519)
                          ..++.-|+++|--|+.++
T Consensus       754 ~t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             CCcHHHHHHHHHHHHhccccCc
Confidence                356777888887777554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.93  E-value=3.2  Score=39.94  Aligned_cols=104  Identities=21%  Similarity=0.148  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccC----CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHH
Q 010064          319 LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNW----TDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASAL  393 (519)
Q Consensus       319 v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~----s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~L  393 (519)
                      -...|+.+|-.++++|+.++.+.+ ....--|...|.-    +..+.++-.+.+++..|..... ....-+....+||-+
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            345788899999999999999988 4554444455531    1234677788999999998644 446667789999999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHhh-hcCCCcc
Q 010064          394 LELTLLGSTLAQKRASRILECLR-VDKGKQV  423 (519)
Q Consensus       394 l~Ll~~gs~~~~~~A~~~L~~l~-~~~~~~~  423 (519)
                      +.+...|+...|.-|..+++.+- +|.+-+.
T Consensus       195 LrIme~gSElSktvaifI~qkil~dDvGLqY  225 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKILGDDVGLQY  225 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchhHHH
Confidence            99999999999999999999887 5544444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=84.74  E-value=28  Score=35.95  Aligned_cols=160  Identities=11%  Similarity=0.137  Sum_probs=119.2

Q ss_pred             hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-c-----HHHHHhc--CcHHHHHHHcCCHHHHHHHHHHH
Q 010064          256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-N-----ISFILET--DLIRYLLEMLGDMELSERILSIL  327 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n-----~~~l~~~--g~v~~Lv~lL~~~~v~~~Al~~L  327 (519)
                      +.+.+.+..|+..|..    -+.+.+.+++....++..... .     ...+...  .++..|+.--+.+++.-.+-.+|
T Consensus        72 i~~~dll~~Li~~L~~----L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPK----LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHTHHHHHHHTGGG----S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhh----CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHH
Confidence            3467889999999888    699999999999999987642 2     2223322  35555555556778888888899


Q ss_pred             HHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc---CcHHHHHHHhhcCCHHH
Q 010064          328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GIASALLELTLLGSTLA  404 (519)
Q Consensus       328 ~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~---G~i~~Ll~Ll~~gs~~~  404 (519)
                      +....++...+.+.. ...+..+.+.+. ..+-++...|..++-.|-..........+..   ..+...-.|+.+++...
T Consensus       148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~-~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  148 RECIKHESLAKIILY-SECFWKFFKYVQ-LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHTTSHHHHHHHHT-SGGGGGHHHHTT-SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHhhHHHHHHHhC-cHHHHHHHHHhc-CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            998888887788877 678888999998 6788999999888887655545555555543   45678888999999999


Q ss_pred             HHHHHHHHHHhhhcCCC
Q 010064          405 QKRASRILECLRVDKGK  421 (519)
Q Consensus       405 ~~~A~~~L~~l~~~~~~  421 (519)
                      |.++.++|.-|-.|+..
T Consensus       226 krqslkLL~ellldr~n  242 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSN  242 (335)
T ss_dssp             HHHHHHHHHHHHHSGGG
T ss_pred             ehhhHHHHHHHHHchhH
Confidence            99999999999877543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=84.66  E-value=31  Score=39.60  Aligned_cols=253  Identities=15%  Similarity=0.154  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064          145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL  224 (519)
Q Consensus       145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l  224 (519)
                      ++.++..++.-+.++++.-.   ......++++.++.++..+...+++.|...+.++..-.+..-  =+..-..+.+++.
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~  324 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQA  324 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHH
Confidence            34455555555555553321   134456677888888877778888888887777764211110  1122366788888


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHH
Q 010064          225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFIL  302 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~  302 (519)
                      ..++   +..++.......+.|...=.  +......-+++...++..    .....+...+.-..-++..-.  ....+.
T Consensus       325 ~~d~---~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~----~~~e~r~a~a~~~~~l~~~l~~~~~~~i~  395 (759)
T KOG0211|consen  325 VEDG---SWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKD----EEWEVRYAIAKKVQKLACYLNASCYPNIP  395 (759)
T ss_pred             hcCh---hHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcc----hhhhhhHHhhcchHHHhhhcCcccccccc
Confidence            8877   66666665555555543211  122233445666666654    233333333333333333221  233344


Q ss_pred             hcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064          303 ETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       303 ~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~  379 (519)
                      ....++.+-.+..+..  +....+....+++- .+  +..-+  .-..+.+...++ ...+.++..-.+.+..+-.....
T Consensus       396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti--~~llp~~~~~l~-de~~~V~lnli~~ls~~~~v~~v  470 (759)
T KOG0211|consen  396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI--SELLPLLIGNLK-DEDPIVRLNLIDKLSLLEEVNDV  470 (759)
T ss_pred             hhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc--cccChhhhhhcc-hhhHHHHHhhHHHHHHHHhccCc
Confidence            4455666666655443  44444444444433 21  11111  224455555555 45666666666555444333222


Q ss_pred             hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          380 DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       380 ~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ........-.+|.+.++.....-+++....+-+..+.
T Consensus       471 ~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la  507 (759)
T KOG0211|consen  471 IGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA  507 (759)
T ss_pred             ccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH
Confidence            2222333344555555554444444444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=84.66  E-value=35  Score=38.92  Aligned_cols=200  Identities=14%  Similarity=0.025  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCc-HHHHHHh
Q 010064          147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGA-VHKMLKL  224 (519)
Q Consensus       147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~-v~~Lv~l  224 (519)
                      ..++.+. .|.+++.+++++...+.+.|++..+...++. ...+++..+...|.|++...+.........-+ ...+-.+
T Consensus       487 ~~~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~  565 (699)
T KOG3665|consen  487 DDVLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVL  565 (699)
T ss_pred             hHHHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            3344444 7778888889999999999999999999986 67889999999999999863333222222211 1233333


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHH
Q 010064          225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFIL  302 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~  302 (519)
                      +..- . +.+..-.++++|..+..+.+.   ....+.-               ..+...-..+..++.....  ......
T Consensus       566 ~~~w-~-~~ersY~~~siLa~ll~~~~~---~~~~~~r---------------~~~~~~l~e~i~~~~~~~~~~~~~~~f  625 (699)
T KOG3665|consen  566 LNKW-D-SIERSYNAASILALLLSDSEK---TTECVFR---------------NSVNELLVEAISRWLTSEIRVINDRSF  625 (699)
T ss_pred             Hhhc-c-hhhHHHHHHHHHHHHHhCCCc---Cccccch---------------HHHHHHHHHHhhccCccceeehhhhhc
Confidence            3222 1 346777788888877665443   1111111               1112222222222222211  111111


Q ss_pred             hcCcHHHHHHHcCCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064          303 ETDLIRYLLEMLGDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV  369 (519)
Q Consensus       303 ~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~  369 (519)
                      ..+ +..++..-..+..+--|++++.|+.. .+++++.+.. .+++..+.++-..+....+++.+...
T Consensus       626 ~~~-~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  626 FPR-ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             chh-HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhhcchhHHHHHHHHHHHHH
Confidence            122 33344333455577788888888888 6666666666 67777777765533333344444333

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=84.37  E-value=60  Score=35.97  Aligned_cols=171  Identities=18%  Similarity=0.149  Sum_probs=92.0

Q ss_pred             cHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-
Q 010064          217 AVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-  293 (519)
Q Consensus       217 ~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-  293 (519)
                      ++..+.+.+++.   .....+ ++.++..+...  .+...      .+..+..++.+........++..|+-++++|.. 
T Consensus       358 a~~~i~~~i~~~---~~~~~e-a~~~~~~~~~~~~~Pt~~------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~  427 (574)
T smart00638      358 ALKFIKQWIKNK---KITPLE-AAQLLAVLPHTARYPTEE------ILKALFELAESPEVQKQPYLRESALLAYGSLVRR  427 (574)
T ss_pred             HHHHHHHHHHcC---CCCHHH-HHHHHHHHHHhhhcCCHH------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence            577777788876   322222 22222222211  12222      356666777653223455677777777766643 


Q ss_pred             ---CCccHHHHHhcCcHHHHHHHcC------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhcc--CCCCHHH
Q 010064          294 ---FPSNISFILETDLIRYLLEMLG------DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLN--WTDSPGC  362 (519)
Q Consensus       294 ---~~~n~~~l~~~g~v~~Lv~lL~------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~--~s~~~~~  362 (519)
                         ..+.....+-...++.|...|.      +.+-....+.+|+|+...           ..+..|..++.  ...++.+
T Consensus       428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~i  496 (574)
T smart00638      428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFI  496 (574)
T ss_pred             HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHH
Confidence               2222212233446666766663      223445678888887641           22233333333  2235689


Q ss_pred             HHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          363 QEKASYVLMVMAH-KSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       363 qe~A~~~L~nL~~-~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +..|+++|..++. .+..         +.+.|+.++.+.+.....|.+..+.++.-
T Consensus       497 R~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      497 RLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            9999999998874 3333         45667888887655444555555555553

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=83.62  E-value=5.4  Score=39.50  Aligned_cols=151  Identities=19%  Similarity=0.202  Sum_probs=93.4

Q ss_pred             hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcC--cHHHHHHHc------CCHHHHHHHHHHHHHhcCC
Q 010064          262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD--LIRYLLEML------GDMELSERILSILSNLVST  333 (519)
Q Consensus       262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g--~v~~Lv~lL------~~~~v~~~Al~~L~nLs~~  333 (519)
                      +..+.+++..    .+.+.+-.++..++-+..++.....+...+  ....+..++      ..+..+.-++++|+||-.+
T Consensus        65 ~~~~~~~~~~----Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~  140 (268)
T PF08324_consen   65 LILLLKILLS----WPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH  140 (268)
T ss_dssp             HHHHHHHHCC----S-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHh----CCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence            4455555544    344557778888887777776555554432  233444433      2344788899999999999


Q ss_pred             cccHHHHhhcCC-cchhhhhhccCCC---CHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhh--cCCHHHHH
Q 010064          334 PEGRKAISRVPD-AFPILVDVLNWTD---SPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTL--LGSTLAQK  406 (519)
Q Consensus       334 ~e~r~~i~~~~g-~i~~Lv~lL~~s~---~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~--~gs~~~~~  406 (519)
                      +.++..+....+ .+...+..+..+.   +..++..++.++.|++..-...+ ..=.+..++..+.+.+.  ..++++.-
T Consensus       141 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~  220 (268)
T PF08324_consen  141 PPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALY  220 (268)
T ss_dssp             CCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHH
T ss_pred             CccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHH
Confidence            999999888544 3333333333122   57788889999999976322111 11111223455555333  26899999


Q ss_pred             HHHHHHHHhh
Q 010064          407 RASRILECLR  416 (519)
Q Consensus       407 ~A~~~L~~l~  416 (519)
                      |+..+|.+|.
T Consensus       221 R~LvAlGtL~  230 (268)
T PF08324_consen  221 RLLVALGTLL  230 (268)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999999

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.47  E-value=32  Score=40.65  Aligned_cols=221  Identities=16%  Similarity=0.142  Sum_probs=115.2

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCh-hhHHHHHhcCcHH
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGND-LNKAAIVKAGAVH  219 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~-~nk~~iv~aG~v~  219 (519)
                      +.+..+|..+-+.|..++.. +........  ..+...|..-+++-+..++...+.+|..|-...+ ++...+.+. +..
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~-I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL-IPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH-HHH
Confidence            34677889999999998865 222222211  1233444444455455556555555555554322 334333322 344


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHhcc----CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064          220 KMLKLIESPVAPNPSVSEAIVANFLGLSA----LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP  295 (519)
Q Consensus       220 ~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~----~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~  295 (519)
                      .++.+ +..   +...++.+-..|..+..    .++....  ....|...+.++..+...........-+-++..+..  
T Consensus       743 vIL~~-Ke~---n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~--  814 (1176)
T KOG1248|consen  743 VILSL-KEV---NVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ--  814 (1176)
T ss_pred             HHHhc-ccc---cHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH--
Confidence            44444 665   77888888777766652    1111110  122455555555442100122222111333333322  


Q ss_pred             ccHHHHHhcCcHHHHHH----Hc--CCHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064          296 SNISFILETDLIRYLLE----ML--GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY  368 (519)
Q Consensus       296 ~n~~~l~~~g~v~~Lv~----lL--~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~  368 (519)
                       +...+++.+.++.+++    .|  +.+++...|+..+.-++. .|+.+-.--. +..++.+..+++ ..+..++..+-.
T Consensus       815 -e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~-d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  815 -EFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSH-DHKIKVRKKVRL  891 (1176)
T ss_pred             -HHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHH-hhhHHHHHHHHH
Confidence             1122333444444444    34  456799999999998887 5554433322 247777777766 556777777777


Q ss_pred             HHHHHhcC
Q 010064          369 VLMVMAHK  376 (519)
Q Consensus       369 ~L~nL~~~  376 (519)
                      +|-.|+..
T Consensus       892 LlekLirk  899 (1176)
T KOG1248|consen  892 LLEKLIRK  899 (1176)
T ss_pred             HHHHHHHH
Confidence            77777654

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.90  E-value=10  Score=37.50  Aligned_cols=187  Identities=19%  Similarity=0.203  Sum_probs=103.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhccCCCCh
Q 010064          177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIESPVA-PNPSVSEAIVANFLGLSALDSNK  253 (519)
Q Consensus       177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS~~~~~k  253 (519)
                      ..+...+..=.++-+.-++-.++-++.+ +..-..+...+  +...+..++..... ..+..+-.++.++.|+-.++..+
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            3344444332223345566666666663 44444443332  24444444433321 15777888999999999998888


Q ss_pred             hhhhhC-C-ChHHHHHHhhcCCCCC---CHHHHHHHHHHHHHhcCCCc-cH-HHHHhcCcHHHHHHHc----CCHHHHHH
Q 010064          254 PIIGSS-G-AVPFLVKTLKNSDKKV---SPQAKQDALRALYNLSIFPS-NI-SFILETDLIRYLLEML----GDMELSER  322 (519)
Q Consensus       254 ~~I~~~-g-ai~~LV~lL~~~~~~~---~~~~~~~A~~aL~nLs~~~~-n~-~~l~~~g~v~~Lv~lL----~~~~v~~~  322 (519)
                      ..+.+. + .+-..+..+..   ..   +..++..++..++|++..-. +. ..-.....+..++..+    .|+++...
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~---~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLS---SLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCT---TS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhh---ccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            887763 2 33333333332   12   67889999999999975321 11 0001112344444433    47789999


Q ss_pred             HHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064          323 ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS  367 (519)
Q Consensus       323 Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~  367 (519)
                      ++.+|++|...+.........-++-..+-..-.....+.+++.+.
T Consensus       222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~  266 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA  266 (268)
T ss_dssp             HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence            999999999866655555552233333333332234566665543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.51  E-value=56  Score=35.22  Aligned_cols=152  Identities=16%  Similarity=0.043  Sum_probs=90.4

Q ss_pred             hcCCHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          172 MLGAIPPLAGMLD----FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       172 ~~G~i~~Lv~lL~----s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      +.|.+.-++..+.    +++...+..|+..|.|.+.+ -+.|..-...-.+..++.-|.++.  +.++...+...|.-++
T Consensus       252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th~~~~ldaii~gL~D~~--~~~V~leam~~Lt~v~  328 (533)
T KOG2032|consen  252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTHKTTQLDAIIRGLYDDL--NEEVQLEAMKCLTMVL  328 (533)
T ss_pred             ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHhHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHH
Confidence            3466655555543    36778899999999999997 344444444456777777665542  5777777777776655


Q ss_pred             cCCCChhhhhhCCChH---HHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc--cHHHHHh--cCcHHHHHHHcCCHH-H
Q 010064          248 ALDSNKPIIGSSGAVP---FLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS--NISFILE--TDLIRYLLEMLGDME-L  319 (519)
Q Consensus       248 ~~~~~k~~I~~~gai~---~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~l~~--~g~v~~Lv~lL~~~~-v  319 (519)
                      ....++.  ...+.++   .+..++.+    .+++.+..|..++..|+....  -...+.+  .+...+|+-.|.|+. .
T Consensus       329 ~~~~~~~--l~~~~l~ialrlR~l~~s----e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~  402 (533)
T KOG2032|consen  329 EKASNDD--LESYLLNIALRLRTLFDS----EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY  402 (533)
T ss_pred             Hhhhhcc--hhhhchhHHHHHHHHHHh----cChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence            4433333  2333444   34456666    688999999888888876443  3333443  133334444444443 3


Q ss_pred             HHHHHHHHHHhcC
Q 010064          320 SERILSILSNLVS  332 (519)
Q Consensus       320 ~~~Al~~L~nLs~  332 (519)
                      ...||....-.+.
T Consensus       403 va~ACr~~~~~c~  415 (533)
T KOG2032|consen  403 VARACRSELRTCY  415 (533)
T ss_pred             HHHHHHHHHHhcC
Confidence            4455555544443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=82.12  E-value=80  Score=34.17  Aligned_cols=265  Identities=16%  Similarity=0.116  Sum_probs=131.6

Q ss_pred             HHHHHHHh-cCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          134 LKIVVKDL-QSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       134 l~~Lv~~L-~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +-.+.+.| ..+ ..+.|..+...+..+.+.... +....+    ..++..+.. ..++.-..-+.+|..|+.+ .++- 
T Consensus        29 iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~-Grdi-  101 (464)
T PF11864_consen   29 IWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMR----AEFFRDISDPSNDDDFDLRLEALIALTDN-GRDI-  101 (464)
T ss_pred             HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcC-CcCc-
Confidence            33444444 322 456788888888887766422 111111    122333332 3333233445555555553 3333 


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhh-hh----CCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPII-GS----SGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I-~~----~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                      ..++.++.|.|...|..-    ......+-.....-+..+.. ...+ .+    ...+.+++.+++-....-+.......
T Consensus       102 ~~~~~~i~~~L~~wl~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~l  177 (464)
T PF11864_consen  102 DFFEYEIGPFLLSWLEPS----YQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSL  177 (464)
T ss_pred             hhcccchHHHHHHHHHHH----HHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            447888999999888643    11111111111111111111 0000 01    22344455555443222344444445


Q ss_pred             HHHHHHhcCCCccHH------H----HHhcCc-----HHHHHHHc----CCHHHHHHHHHHHHHhcCCcccHHHHhhcCC
Q 010064          285 LRALYNLSIFPSNIS------F----ILETDL-----IRYLLEML----GDMELSERILSILSNLVSTPEGRKAISRVPD  345 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~------~----l~~~g~-----v~~Lv~lL----~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g  345 (519)
                      +..+..+|..+.+..      .    ++..|.     ++.++..|    +..++...+-.++.||+.+.-+..       
T Consensus       178 v~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~-------  250 (464)
T PF11864_consen  178 VDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS-------  250 (464)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-------
Confidence            555555543332111      1    222232     22333333    444677788888999987554433       


Q ss_pred             cchhhhhhccC-----CCCHHHHHHHHHHHHHHhcCChhhHH-HHHHc--CcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          346 AFPILVDVLNW-----TDSPGCQEKASYVLMVMAHKSYGDRQ-AMIEA--GIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       346 ~i~~Lv~lL~~-----s~~~~~qe~A~~~L~nL~~~~~~~~~-~i~~~--G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ++..|.++|..     ..+..+..-|+.++..+..+..+.+- .+--.  -++|.|...+..+++.+--....++..+-
T Consensus       251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            34467777721     13455667888888888877533222 22122  37888888888887777666666666665

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.91  E-value=52  Score=37.09  Aligned_cols=113  Identities=19%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..+++...+.+..+|-..+..|..+.....+.-+.+ -.+....+..=|...-+.++..|+.+|..+-.. +.+-    
T Consensus        87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~de----  160 (892)
T KOG2025|consen   87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDE----  160 (892)
T ss_pred             HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCC----
Confidence            6677777777888899999999999886443333322 345566666666667788999999999999842 2211    


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhh
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIG  257 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~  257 (519)
                      +..++..+..++++.+  +++++.++   |.+++.++...+.|+
T Consensus       161 e~~v~n~l~~liqnDp--S~EVRRaa---LsnI~vdnsTlp~Iv  199 (892)
T KOG2025|consen  161 ECPVVNLLKDLIQNDP--SDEVRRAA---LSNISVDNSTLPCIV  199 (892)
T ss_pred             cccHHHHHHHHHhcCC--cHHHHHHH---HHhhccCcccchhHH
Confidence            2346788889998863  78888854   778887777777665

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=81.78  E-value=45  Score=38.47  Aligned_cols=157  Identities=15%  Similarity=0.082  Sum_probs=101.8

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064          173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                      .+++..|.++....+.++......+|+..+.- +.-.....+.-+.|.++.+.-..++ ++.+...+--++..|+....+
T Consensus       529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~-DP~V~~~~qd~f~el~q~~~~  606 (1005)
T KOG2274|consen  529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSE-DPQVASLAQDLFEELLQIAAN  606 (1005)
T ss_pred             hHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHh
Confidence            34566777777667788888888888888885 4445556667788888775432222 677777776677777765555


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHH
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEML---GDMELSERILSILS  328 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~  328 (519)
                      ...+ +.-.||.||+.|.............-|+..|.-+..+.. -....+-.-++|++.++.   +|..+...+-.||+
T Consensus       607 ~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  607 YGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             hcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence            4444 345799999999874211224555666677776666544 345555566778887776   34556666666666


Q ss_pred             HhcC
Q 010064          329 NLVS  332 (519)
Q Consensus       329 nLs~  332 (519)
                      .+..
T Consensus       686 a~Is  689 (1005)
T KOG2274|consen  686 ALIS  689 (1005)
T ss_pred             HHHh
Confidence            6655

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=81.43  E-value=44  Score=37.75  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH
Q 010064          305 DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR  381 (519)
Q Consensus       305 g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~  381 (519)
                      ++|+.|+..- .  +.+++..|+.+|+-++..+         +..++..+++|..+.||.++-.++.+|..-|.+. +.+
T Consensus       554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~  623 (929)
T KOG2062|consen  554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLK  623 (929)
T ss_pred             hhHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcH
Confidence            5667777663 3  3568888888888666521         3456677888877789999999999999988873 434


Q ss_pred             HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          382 QAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       382 ~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .+      |..|-.|..+...-+|+-|+.+++.+-
T Consensus       624 eA------i~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  624 EA------INLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             HH------HHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence            32      223333444555556666666666554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=81.42  E-value=14  Score=33.70  Aligned_cols=132  Identities=18%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhccChhhHHHHH-hcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDL-QSESEEQRREAASKVRSLAKENSETRVTLA-MLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L-~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~-~~G~i~~L  179 (519)
                      ...+..++..+..+-  +..++..     .+.+...+..+ ..++.+....++.++..|--..++.-..+. ..|+++.+
T Consensus        19 ~~~r~~a~v~l~k~l--~~~~~~~-----~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l   91 (157)
T PF11701_consen   19 EEVRSHALVILSKLL--DAAREEF-----KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL   91 (157)
T ss_dssp             CCHHHHHHHHHHHHH--HHHHHHH-----HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred             HhHHHHHHHHHHHHH--HHhHHHH-----HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence            344555555554441  3333322     23344555433 334445778888888887766666555554 57889999


Q ss_pred             HHhhc--CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHH-HHHHHHHHHH
Q 010064          180 AGMLD--FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPS-VSEAIVANFL  244 (519)
Q Consensus       180 v~lL~--s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~-~~~~a~~aL~  244 (519)
                      +.++.  +.+..++..++.+|..=|. ++..+..|.+. +++.|-+..+...  +.. ++..|+-.|.
T Consensus        92 ~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~--~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   92 LPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSK--DDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC---HH-CHHHHHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHcccc--chHHHHHHHHHHHh
Confidence            99998  7889999999999888777 36666666665 7899999996541  344 5666555554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=81.30  E-value=39  Score=39.66  Aligned_cols=149  Identities=14%  Similarity=0.137  Sum_probs=89.4

Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCccc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEG  336 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~  336 (519)
                      +++..|...++.    .+..++-.|+..+..++...+   .-+...+|...+.++   .++..=-.+|-+|+.|+.-.=-
T Consensus       341 ~vie~Lls~l~d----~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL  413 (1133)
T KOG1943|consen  341 FVIEHLLSALSD----TDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL  413 (1133)
T ss_pred             HHHHHHHHhccC----CcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence            345555555555    799999999999999987654   223334455555555   3333334788888888862111


Q ss_pred             HHHHhhcCCcchhhhhhccC-------CCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          337 RKAISRVPDAFPILVDVLNW-------TDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~-------s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                      ......  .+++.++.-|..       +....+++.||++++.+++..+. .-+.+.+.=.-..|+.-+.+..-..|..|
T Consensus       414 lps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  414 LPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             chHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence            111111  356666665542       12356899999999999987332 12222221111223334446677889889


Q ss_pred             HHHHHHhhh
Q 010064          409 SRILECLRV  417 (519)
Q Consensus       409 ~~~L~~l~~  417 (519)
                      ..+++-...
T Consensus       492 sAAlqE~VG  500 (1133)
T KOG1943|consen  492 SAALQENVG  500 (1133)
T ss_pred             HHHHHHHhc
Confidence            999887764

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=81.12  E-value=59  Score=36.02  Aligned_cols=213  Identities=18%  Similarity=0.147  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--cChhhHHHHHhcCC---HHHHHHhhcCCCH---HHHHHHHHHHHHhc
Q 010064          131 LEELKIVVKDLQSESEEQRREAASKVRSLAK--ENSETRVTLAMLGA---IPPLAGMLDFQLA---DSQISSLYALLNLG  202 (519)
Q Consensus       131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~--~~~~~r~~l~~~G~---i~~Lv~lL~s~~~---~~~~~a~~aL~NLa  202 (519)
                      ...+-.|++.|..-+.+.-......+.. ..  .-.-+.+.+...|-   +..+.+++.++..   +.......++..+.
T Consensus       310 ~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~  388 (574)
T smart00638      310 AAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR  388 (574)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh
Confidence            3446677777776665554444444443 11  11234555555564   4555555655432   22222222222222


Q ss_pred             CCChhhHHHHHhcCcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhc---c-CCCChhhhhhCCChHHHHHHhhcCCCCCC
Q 010064          203 IGNDLNKAAIVKAGAVHKMLKLIESPVA-PNPSVSEAIVANFLGLS---A-LDSNKPIIGSSGAVPFLVKTLKNSDKKVS  277 (519)
Q Consensus       203 ~~~~~nk~~iv~aG~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS---~-~~~~k~~I~~~gai~~LV~lL~~~~~~~~  277 (519)
                      ..+++         .+..|..+++++.. .+..+...++-++.++.   + +.+..........++.|...|.......+
T Consensus       389 ~Pt~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  459 (574)
T smart00638      389 YPTEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD  459 (574)
T ss_pred             cCCHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence            22222         45677777776422 13455665555554443   2 22221112224467777776654211245


Q ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC-----CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhh
Q 010064          278 PQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG-----DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILV  351 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~-----~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv  351 (519)
                      ..-+..++.+|.|+....          .+..|..++.     +..++..|+++|..++. .++   .      +-+.|+
T Consensus       460 ~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---~------v~~~l~  520 (574)
T smart00638      460 EEEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---K------VQEVLL  520 (574)
T ss_pred             chheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---H------HHHHHH
Confidence            566788899999886433          2233333342     23488999999998875 322   1      222444


Q ss_pred             hhcc-CCCCHHHHHHHHHHHHH
Q 010064          352 DVLN-WTDSPGCQEKASYVLMV  372 (519)
Q Consensus       352 ~lL~-~s~~~~~qe~A~~~L~n  372 (519)
                      .+.. ...+++++-.|+.+|+.
T Consensus       521 ~i~~n~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      521 PIYLNRAEPPEVRMAAVLVLME  542 (574)
T ss_pred             HHHcCCCCChHHHHHHHHHHHh
Confidence            4443 24567788777666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	519
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-06

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
           G +  L  +L    ++ Q  +  AL N+  G D    AIV AG V  ++KL+ S  +   
Sbjct: 44  GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQ 103
Query: 234 SVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI 293
             +   +AN    S  D     I  +G V  LVK L ++D +V    +++A RAL N++ 
Sbjct: 104 KEAARALANI--ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV----QKEAARALANIAS 157
Query: 294 FPSN-ISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDA--FP 348
            P   I  I++   +  L+++L   D E+ +     L+N+ S P    AI  + DA    
Sbjct: 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--TSAIKAIVDAGGVE 215
Query: 349 ILVDVLNWTDSPGCQEKASYVL 370
           +L  +L  TDS   Q++A   L
Sbjct: 216 VLQKLLTSTDSE-VQKEAQRAL 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	519
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-35
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-25
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-15
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-34
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-17
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-34
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-31
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-18
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-15
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-34
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	3e-30
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-19
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-15
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-08
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-20
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-20
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-12
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-28
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-11
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-25
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-24
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-10
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-08
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-22
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-20
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-15
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-07
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-14
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-07
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-04

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  138 bits (348), Expect = 7e-35
 Identities = 61/309 (19%), Positives = 114/309 (36%), Gaps = 17/309 (5%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           +  L++ EA+     +   +  +  +V+ +Q+ ++ +     S        + E  + + 
Sbjct: 174 VHQLSKKEASRHAIMRSPQM--VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231

Query: 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
             G IP L  ML   +      ++  L NL +  +  K A+  AG + KM+ L+      
Sbjct: 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---T 288

Query: 232 NPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290
           N             L+  +  +K II +SG    LV  ++        +      R L  
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT---YEKLLWTTSRVLKV 345

Query: 291 LSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFP 348
           LS+  SN   I+E   ++ L   L      L +  L  L NL      ++ +        
Sbjct: 346 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLG 402

Query: 349 ILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST--LAQK 406
            LV +L  +D       A+ +L  +   +Y ++  + + G   AL+   L         +
Sbjct: 403 TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461

Query: 407 RASRILECL 415
            A   L  L
Sbjct: 462 PAICALRHL 470

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  112 bits (282), Expect = 2e-26
 Identities = 59/324 (18%), Positives = 120/324 (37%), Gaps = 22/324 (6%)

Query: 112 LLNLAEGEAASEIKKKEE-ALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTL 170
           L NL   +  +++  +    L+++   V  L   + +        ++ LA  N E+++ +
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKM---VALLNKTNVKFLAITTDCLQILAYGNQESKLII 314

Query: 171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
              G    L  ++     +  + +   +L +      NK AIV+AG +  +   +  P  
Sbjct: 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-- 372

Query: 231 PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290
            +  + +  +     LS  D+     G  G +  LV+ L + D  V       A   L N
Sbjct: 373 -SQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINV----VTCAAGILSN 425

Query: 291 LSIF-PSNISFILETDLIRYLLEMLGDMELSERI----LSILSNLVSTPEGRK---AISR 342
           L+     N   + +   I  L+  +      E I    +  L +L S  +  +      R
Sbjct: 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485

Query: 343 VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST 402
           +    P++V +L+   S     KA+  L+        +   + E G    L++L +    
Sbjct: 486 LHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 544

Query: 403 LAQKRASRILECLRVDKGKQVSGT 426
             Q+R S      +  +G ++   
Sbjct: 545 DTQRRTSMGGTQQQFVEGVRMEEI 568

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  109 bits (274), Expect = 2e-25
 Identities = 47/290 (16%), Positives = 96/290 (33%), Gaps = 13/290 (4%)

Query: 128 EEALEELKIVVKDLQSESEEQRREAASKVRSLAKE--NSETRVTLAMLGAIPPLAGMLDF 185
           +E ++            + ++  E +  ++       N +    LA   AIP L  +L+ 
Sbjct: 103 DEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELA-TRAIPELTKLLND 161

Query: 186 QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLG 245
           +       +   +  L        A +     V  +++ +++    +   +         
Sbjct: 162 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHN 219

Query: 246 LSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILET 304
           LS        I  SG +P LV  L +    V       A+  L+NL +        +   
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSV----LFHAITTLHNLLLHQEGAKMAVRLA 275

Query: 305 DLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGC 362
             ++ ++ +L   +++        L  L    +  K I         LV+++        
Sbjct: 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKL 335

Query: 363 QEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412
               S VL V++  S  ++ A++EAG   AL       S    +     L
Sbjct: 336 LWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  108 bits (270), Expect = 6e-25
 Identities = 50/310 (16%), Positives = 101/310 (32%), Gaps = 19/310 (6%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           +L  A     +     E A   +  + K L  E +    +AA  V  L+K+ +     + 
Sbjct: 130 MLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189

Query: 172 MLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
               +  +   +      ++   +   L NL    +    AI K+G +  ++ ++ S   
Sbjct: 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGS--- 245

Query: 231 PNPSVSEAIVANFLGLSA-LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
           P  SV    +     L    +  K  +  +G +  +V  L  ++ K            L 
Sbjct: 246 PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF----LAITTDCLQ 301

Query: 290 NLSIF-PSNISFILETDLIRYLLEMLGDMELSERILS---ILSNLVSTPEGRKAISRVPD 345
            L+     +   IL +   + L+ ++      + + +   +L  L      + AI     
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-G 360

Query: 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ 405
               L   L    S    +   + L    + S    +     G+   L++L         
Sbjct: 361 GMQALGLHLT-DPSQRLVQNCLWTL---RNLSDAATKQEGMEGLLGTLVQLLGSDDINVV 416

Query: 406 KRASRILECL 415
             A+ IL  L
Sbjct: 417 TCAAGILSNL 426

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 83.9 bits (207), Expect = 3e-17
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 33/289 (11%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLA---KENSETRV 168
           L NL      +++   +    E  +       + E+    A   +R L    ++    + 
Sbjct: 423 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482

Query: 169 TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP 228
            + +   +P +  +L        I +   L+        N A + + GA+ ++++L+   
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR- 541

Query: 229 VAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL 288
              +                ++  +                         +  +    AL
Sbjct: 542 --AHQDTQRRTSMGGTQQQFVEGVR-----------------------MEEIVEACTGAL 576

Query: 289 YNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDA 346
           + L+    N   I   + I   +++L      +      +L  L    E  +AI     A
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE-GA 635

Query: 347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLE 395
              L ++L+ + + G    A+ VL  M+     D +  +   + S+L  
Sbjct: 636 TAPLTELLH-SRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 77.0 bits (189), Expect = 6e-15
 Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 32/232 (13%)

Query: 112 LLNLAEGEAASEIKKKEEALEE-LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTL 170
           L +L      +E+ +    L   L +VVK L   S     +A   +             L
Sbjct: 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 526

Query: 171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL---------------------NK 209
              GAIP L  +L     D+Q  +            +                     N+
Sbjct: 527 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNR 586

Query: 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269
             I     +   ++L+ SP     ++          L+        I + GA   L + L
Sbjct: 587 IVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643

Query: 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSE 321
            + ++ V       A   L+ +S    +     +  L   L   L   E   
Sbjct: 644 HSRNEGV----ATYAAAVLFRMS---EDKPQDYKKRLSVELTSSLFRTEPMT 688

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 4/131 (3%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           L  LA       + +    +      V+ L S  E  +R AA  +  LA ++ E    + 
Sbjct: 576 LHILARDIHNRIVIRGLNTIPLF---VQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIE 631

Query: 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
             GA  PL  +L  +       +   L  +      +    +       + +        
Sbjct: 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNE 691

Query: 232 NPSVSEAIVAN 242
              +   I A 
Sbjct: 692 TGDLGLDIGAQ 702

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  129 bits (326), Expect = 2e-34
 Identities = 53/248 (21%), Positives = 112/248 (45%), Gaps = 19/248 (7%)

Query: 129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLA 188
             L ++    + L S+  +++  A  K   +  + +E    +   GA+P L  +L     
Sbjct: 12  SELPQM---TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248
                +L+AL N+  G +    A++ AGA+  +++L+ S   PN  + +      L   A
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQ-EALWALSNIA 124

Query: 249 LDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETD 305
                    +  +GA+P LV+ L + ++++     Q+AL AL N++      I  +++  
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALWALSNIASGGNEQIQAVIDAG 180

Query: 306 LIRYLLEML--GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGC 362
            +  L+++L   + ++ +  L  LSN+ S   E ++A+     A   L  + +  ++   
Sbjct: 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQS-HENEKI 238

Query: 363 QEKASYVL 370
           Q++A   L
Sbjct: 239 QKEAQEAL 246

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 40/183 (21%), Positives = 83/183 (45%), Gaps = 12/183 (6%)

Query: 112 LLNLAEGEAASEIKKKEEALEE--LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVT 169
           L N+A G       + +  ++   L  +V+ L S +E+  +EA   + ++A   +E    
Sbjct: 78  LSNIASGGNE----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229
           +   GA+P L  +L          +L+AL N+  G +    A++ AGA+  +++L+ SP 
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193

Query: 230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
                 +   ++N       +  K  +  +GA+  L +   + ++K+    +++A  AL 
Sbjct: 194 EQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSHENEKI----QKEAQEALE 247

Query: 290 NLS 292
            L 
Sbjct: 248 KLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 33/167 (19%), Positives = 68/167 (40%), Gaps = 8/167 (4%)

Query: 249 LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL-SIFPSNISFILETDLI 307
           +  +         +P + + L + D     Q +  A R    + S     I  +++   +
Sbjct: 1   MRGSHHHHHHGSELPQMTQQLNSDD----MQEQLSATRKFSQILSDGNEQIQAVIDAGAL 56

Query: 308 RYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
             L+++L   + ++ +  L  LSN+ S    +        A P LV +L+ + +    ++
Sbjct: 57  PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQE 115

Query: 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412
           A + L  +A       QA+I+AG   AL++L    +    + A   L
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  135 bits (341), Expect = 2e-34
 Identities = 64/310 (20%), Positives = 119/310 (38%), Gaps = 19/310 (6%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESE-EQRREAASKVRSLAKENSETRVTL 170
           +  L++ EA+     +   +  +  +V+ +Q+ ++ E  R  A  + +L+  + E  + +
Sbjct: 41  VHQLSKKEASRHAIMRSPQM--VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAI 97

Query: 171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA 230
              G IP L  ML   +      ++  L NL +  +  K A+  AG + KM+ L+     
Sbjct: 98  FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--- 154

Query: 231 PNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
            N             L+  +  +K II +SG    LV  ++        +      R L 
Sbjct: 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---EKLLWTTSRVLK 211

Query: 290 NLSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAF 347
            LS+  SN   I+E   ++ L   L      L +  L  L NL      ++ +       
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLL 268

Query: 348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST--LAQ 405
             LV +L  +D       A+ +L  +   +Y ++  + + G   AL+   L         
Sbjct: 269 GTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327

Query: 406 KRASRILECL 415
           + A   L  L
Sbjct: 328 EPAICALRHL 337

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  126 bits (317), Expect = 3e-31
 Identities = 60/330 (18%), Positives = 110/330 (33%), Gaps = 26/330 (7%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQ 148
           N    E  +   G          L NL+          K   +  L   VK L S  +  
Sbjct: 70  NTNDVETARCTAGT---------LHNLSHHREGLLAIFKSGGIPAL---VKMLGSPVDSV 117

Query: 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN 208
              A + + +L       ++ + + G +  +  +L+         +   L  L  GN  +
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT 268
           K  I+ +G    ++ ++ +       +          LS   SNKP I  +G +  L   
Sbjct: 178 KLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 269 LKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSI 326
           L +  +++     Q+ L  L NLS   +         L+  L+++L   D+ +      I
Sbjct: 236 LTDPSQRL----VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGI 289

Query: 327 LSNLVSTPEGRKAISRVPDAFPILVDVL-NWTDSPGCQEKASYVLMVMAHKSYGD---RQ 382
           LSNL       K +         LV  +    D     E A   L  +  +       + 
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 383 AMIEAGIASALLELTLLGSTLAQKRASRIL 412
           A+        +++L    S     +A+  L
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  114 bits (288), Expect = 1e-27
 Identities = 49/292 (16%), Positives = 96/292 (32%), Gaps = 22/292 (7%)

Query: 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLA 188
           A+ EL    K L  E +    +AA  V  L+K+ +     +     +  +   +      
Sbjct: 18  AIPEL---TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248
           ++   +   L NL    +    AI K+G +  ++K++ S   P  SV    +     L  
Sbjct: 75  ETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLL 130

Query: 249 LDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDL 306
                K  +  +G +  +V  L  ++     +        L  L+     +   IL +  
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTN----VKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 307 IRYLLEMLG---DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363
            + L+ ++      +L      +L  L      + AI         L   L    S    
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLT-DPSQRLV 244

Query: 364 EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
           +   + L  ++       +     G+   L++L           A+ IL  L
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 85.6 bits (212), Expect = 7e-18
 Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 28/243 (11%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLA---KENSETRV 168
           L NL      +++   +    E  +       + E+    A   +R L    +E    + 
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 169 TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP 228
            + +   +P +  +L        I +   L+        N A + + GA+ ++++L+   
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409

Query: 229 -------------------VAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269
                                    + E        L+    N+ +I     +P  V+ L
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL 469

Query: 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSIL 327
            +  + +    ++ A   L  L+        I        L E+L   +  ++    ++L
Sbjct: 470 YSPIENI----QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 328 SNL 330
             +
Sbjct: 526 FRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 35/203 (17%), Positives = 61/203 (30%), Gaps = 29/203 (14%)

Query: 112 LLNLAEGEAASEIKKKEEALEE-LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTL 170
           L +L      +E+ +    L   L +VVK L   S     +A   +             L
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 171 AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL---------------------NK 209
              GAIP L  +L     D+Q  +            +                     N+
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453

Query: 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269
             I     +   ++L+ SP     ++          L+        I + GA   L + L
Sbjct: 454 IVIRGLNTIPLFVQLLYSP---IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 510

Query: 270 KNSDKKVSPQAKQDALRALYNLS 292
            + ++ V       A   L+ +S
Sbjct: 511 HSRNEGV----ATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  135 bits (342), Expect = 3e-34
 Identities = 60/309 (19%), Positives = 114/309 (36%), Gaps = 17/309 (5%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           +  L++ EA+     +   +  +  +V+ +Q+ ++ +     +        + E  + + 
Sbjct: 38  VHQLSKKEASRHAIMRSPQM--VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95

Query: 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
             G IP L  ML   +      ++  L NL +  +  K A+  AG + KM+ L+      
Sbjct: 96  KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---T 152

Query: 232 NPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290
           N             L+  +  +K II +SG    LV  ++        +      R L  
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY---EKLLWTTSRVLKV 209

Query: 291 LSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFP 348
           LS+  SN   I+E   ++ L   L      L +  L  L NL      ++ +        
Sbjct: 210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLG 266

Query: 349 ILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGST--LAQK 406
            LV +L  +D       A+ +L  +   +Y ++  + + G   AL+   L         +
Sbjct: 267 TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325

Query: 407 RASRILECL 415
            A   L  L
Sbjct: 326 PAICALRHL 334

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  127 bits (320), Expect = 2e-31
 Identities = 61/402 (15%), Positives = 123/402 (30%), Gaps = 32/402 (7%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQ 148
           N    E  +   G          L NL+          K   +  L   VK L S  +  
Sbjct: 67  NTNDVETARCTAGT---------LHNLSHHREGLLAIFKSGGIPAL---VKMLGSPVDSV 114

Query: 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN 208
              A + + +L       ++ + + G +  +  +L+         +   L  L  GN  +
Sbjct: 115 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174

Query: 209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT 268
           K  I+ +G    ++ ++ +       +          LS   SNKP I  +G +  L   
Sbjct: 175 KLIILASGGPQALVNIMRTY--TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232

Query: 269 LKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSI 326
           L +  +++     Q+ L  L NLS   +         L+  L+++L   D+ +      I
Sbjct: 233 LTDPSQRL----VQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGI 286

Query: 327 LSNLVSTPEGRKAISRVPDAFPILVDVL-NWTDSPGCQEKASYVLMVMAHKSYGD---RQ 382
           LSNL       K +         LV  +    D     E A   L  +  +       + 
Sbjct: 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346

Query: 383 AMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSGTYGGNLVAAAAVSAPIC 442
           A+        +++L    S     +A+  L           +       +        + 
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA------PLREQGAIPRLV 400

Query: 443 GSSSSTSTNPNGVAKECLEEEEDMMSEEKKAVKQLVQQSLQN 484
                   +          +++ +     + + +    +L  
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  119 bits (299), Expect = 1e-28
 Identities = 50/292 (17%), Positives = 97/292 (33%), Gaps = 22/292 (7%)

Query: 130 ALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-QLA 188
           A+ EL    K L  E +    +AA  V  L+K+ +     +     +  +   +      
Sbjct: 15  AIPEL---TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 71

Query: 189 DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA 248
           ++   +   L NL    +    AI K+G +  ++K++ S   P  SV    +     L  
Sbjct: 72  ETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLL 127

Query: 249 -LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDL 306
             +  K  +  +G +  +V  L  ++ K            L  L+     +   IL +  
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKF----LAITTDCLQILAYGNQESKLIILASGG 183

Query: 307 IRYLLEMLG---DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ 363
            + L+ ++      +L      +L  L      + AI         L   L    S    
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLT-DPSQRLV 241

Query: 364 EKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
           +   + L  ++       +     G+   L++L           A+ IL  L
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 99.6 bits (248), Expect = 2e-22
 Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 10/243 (4%)

Query: 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPN 232
             AIP L  +L+ +       +   +  L        A +     V  +++ +++    +
Sbjct: 13  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--ND 70

Query: 233 PSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292
              +         LS        I  SG +P LVK L +    V       A+  L+NL 
Sbjct: 71  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV----LFYAITTLHNLL 126

Query: 293 IFPSNI-SFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPI 349
           +        +     ++ ++ +L   +++        L  L    +  K I         
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186

Query: 350 LVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409
           LV+++            S VL V++  S  ++ A++EAG   AL       S    +   
Sbjct: 187 LVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245

Query: 410 RIL 412
             L
Sbjct: 246 WTL 248

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 90.0 bits (223), Expect = 3e-19
 Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 11/213 (5%)

Query: 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-PIIGSSGAVPFLVKTL 269
           A +   A+ ++ KL+      +  V          LS  ++++  I+ S   V  +V+T+
Sbjct: 9   AELATRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSIL 327
           +N++     +  +     L+NLS     +  I ++  I  L++ML      +    ++ L
Sbjct: 66  QNTN---DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 328 SNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA 387
            NL+   EG K   R+      +V +LN   +       +  L ++A+ +   +  ++ +
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILAS 181

Query: 388 GIASALLELTLLGSTLAQKR-ASRILECLRVDK 419
           G   AL+ +    +        SR+L+ L V  
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 214

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 88.1 bits (218), Expect = 1e-18
 Identities = 40/296 (13%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 112 LLNLAEGEAA-SEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLA---KENSETR 167
           L NL         +  +   +E L +       + E+    A   +R L    +E    +
Sbjct: 287 LSNLTCNNYKNKMMVCQVGGIEAL-VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345

Query: 168 VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES 227
             + +   +P +  +L        I +   L+        N A + + GA+ ++++L+  
Sbjct: 346 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 405

Query: 228 PVA-------------------PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT 268
                                     + E        L+    N+ +I     +P  V+ 
Sbjct: 406 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 465

Query: 269 LKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSI 326
           L +  + +    ++ A   L  L+        I        L E+L   +  ++    ++
Sbjct: 466 LYSPIENI----QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 521

Query: 327 LSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQ 382
           L  +    E +    +   +  +   +   T+     E A   L + A       +
Sbjct: 522 LFRMS---EDKPQDYKKRLSVELTSSLFR-TEPMAWNETADLGLDIGAQGEPLGYR 573

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  121 bits (306), Expect = 3e-30
 Identities = 64/329 (19%), Positives = 125/329 (37%), Gaps = 23/329 (6%)

Query: 93  PEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQ-SESEEQRRE 151
           PE+Q  A               L   E    I +       +   V+ L+  E+   + E
Sbjct: 34  PEQQLSATQK---------FRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 152 AASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA 211
           +A  + ++A  NS     +   GA+P    +L  +  D Q  +++AL N+   + + +  
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP-IIGSSGAVPFLVKTLK 270
           ++    +  +L+L         +++   V     L    S  P     S  +  L   L 
Sbjct: 145 VLDCNILPPLLQLFSKQ--NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 271 NSDKKVSPQAKQDALRALYNLSI-FPSNISFILETDLIRYLLEMLG--DMELSERILSIL 327
            SD  V      DA  AL  LS      I  +++  + R L+E+L   D ++    L  +
Sbjct: 203 VSDTDV----LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV 258

Query: 328 SNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE 386
            N+V+      + I     A   L+ +L+ +     +++A + +  +   +    Q +I+
Sbjct: 259 GNIVTGDDIQTQVILN-CSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTVID 316

Query: 387 AGIASALLELTLLGSTLAQKRASRILECL 415
           A I  AL+ +        +K A+  +   
Sbjct: 317 ANIFPALISILQTAEFRTRKEAAWAITNA 345

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  107 bits (268), Expect = 4e-25
 Identities = 62/306 (20%), Positives = 110/306 (35%), Gaps = 20/306 (6%)

Query: 118 GEAASEIKKKEEALEELKI--VVKDLQSESEEQRREAASKVRSLAK--ENSETRVTLAML 173
           G   ++I   E A   +    +++ + S+S EQ+  A  K R L     N      ++  
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 174 GAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPN 232
           G +      L   +    Q  S + L N+  GN L    +++AGAV   ++L+ S     
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS---EF 120

Query: 233 PSVSE-AIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
             V E A+ A  LG  A DS   +  +     +P L++     ++       ++A+ AL 
Sbjct: 121 EDVQEQAVWA--LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR---LTMTRNAVWALS 175

Query: 290 NLSI-FPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDA 346
           NL         F   +  +  L  +L   D ++       LS L   P  +         
Sbjct: 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235

Query: 347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK 406
              LV++L   +       A   +  +        Q ++      +LL L        +K
Sbjct: 236 CRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294

Query: 407 RASRIL 412
            A   +
Sbjct: 295 EACWTI 300

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 98.8 bits (246), Expect = 2e-22
 Identities = 61/332 (18%), Positives = 121/332 (36%), Gaps = 23/332 (6%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQ 148
                  Q E+            L N+A G   S   +       + I ++ L SE E+ 
Sbjct: 75  RKENCTLQFESAWV---------LTNIASGN--SLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 149 RREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSL-YALLNLGIGNDL 207
           + +A   + ++A +++  R  +     +PPL  +   Q   +   +  +AL NL  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGSSGAVPFLV 266
                  +  ++ +  L+      +  V          LS   +     +  +G    LV
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVS---DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLV 240

Query: 267 KTLKNSDKKVSPQAKQDALRALYNL-SIFPSNISFILETDLIRYLLEML--GDMELSERI 323
           + L ++D KV       ALRA+ N+ +        IL    ++ LL +L      + +  
Sbjct: 241 ELLMHNDYKV----VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296

Query: 324 LSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQA 383
              +SN+ +    +       + FP L+ +L   +    +E A  +    +  S    + 
Sbjct: 297 CWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356

Query: 384 MIEAGIASALLELTLLGSTLAQKRASRILECL 415
           ++E G    L +L  +  +   + A   LE +
Sbjct: 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 88.0 bits (218), Expect = 8e-19
 Identities = 42/235 (17%), Positives = 94/235 (40%), Gaps = 14/235 (5%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           L NL  G+  S   +  +    L ++   L     +   +A   +  L+   ++    + 
Sbjct: 174 LSNLCRGK--SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231

Query: 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAP 231
             G    L  +L          +L A+ N+  G+D+    I+   A+  +L L+ S   P
Sbjct: 232 DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---P 288

Query: 232 NPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290
             S+ +        ++A +      +  +   P L+  L+ ++ +     +++A  A+ N
Sbjct: 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT----RKEAAWAITN 344

Query: 291 LSIFPS--NISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAIS 341
            +   S   I +++E   I+ L ++L   D ++ +  L+ L N++   E     +
Sbjct: 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  118 bits (297), Expect = 5e-29
 Identities = 60/340 (17%), Positives = 125/340 (36%), Gaps = 33/340 (9%)

Query: 105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS 164
           +  ++L LL        +  + +E     +      + +  E Q   A   +  L+  + 
Sbjct: 121 REIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DE 179

Query: 165 ETRVTLAMLGAIPPLAGMLDFQLADSQISSLY-----------ALLNLGIGNDLNKAAIV 213
           E R  +  LG +  +A +L        +++ +           AL NL  G+  NKA + 
Sbjct: 180 EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239

Query: 214 -KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLK 270
              G +  ++  ++S    +  + + I +    LS     ++K  +   G+V  L++   
Sbjct: 240 SMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 296

Query: 271 NSDKKVSPQAKQDALRALYNLSIFPSN--ISFILETDLIRYLLEMLGDMELSER------ 322
                      +  L AL+NLS   +            + +L+  L     +        
Sbjct: 297 EVK---KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIES 353

Query: 323 ---ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG 379
              IL  +S+L++T E  + I R  +    L+  L  + S      A   L  ++ ++  
Sbjct: 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPK 412

Query: 380 DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDK 419
           D++A+ + G  S L  L      +    ++  L  L  ++
Sbjct: 413 DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 51/352 (14%), Positives = 111/352 (31%), Gaps = 61/352 (17%)

Query: 116 AEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGA 175
           +     S +  K E +  L      L       + + +  + +++  + ++ +++   G 
Sbjct: 19  SHMRLTSHLGTKVEMVYSL------LSMLGTHDKDDMSRTLLAMSS-SQDSCISMRQSGC 71

Query: 176 IPPLAGMLDFQLADSQISSLY------------ALLNLGIGNDLNKAAIVKAGAVHKMLK 223
           +P L  +L     DS +                AL N+ I +  +     +   V  +L+
Sbjct: 72  LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI-IHSQPDDKRGRREIRVLHLLE 130

Query: 224 LIESPV----------------------APNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261
            I +                        AP        V   + LS  + ++  +   G 
Sbjct: 131 QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG 190

Query: 262 VPFLVKTLK-------NSDKKVSPQAKQDALRALYNLSIFPSNI--SFILETDLIRYLLE 312
           +  + + L+        ++   S   ++ A  AL NL+        +       +R L+ 
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250

Query: 313 ML--GDMELSERILSILSNLVST--PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY 368
            L     +L + I S+L NL        +K +  V  +   L++           +    
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG-SVKALMECALEVKKESTLKSVLS 309

Query: 369 VLMVMAHKSYGDRQAMIEAGIASALLELTLL-----GSTLAQKRASRILECL 415
            L  ++     ++  +     A A L  TL       +    +    IL  +
Sbjct: 310 ALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 21/174 (12%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAA--SEIKKKEEALEEL-KIVVKDLQSES 145
             +K    K              L NL+       ++I   + AL  L   +    Q+ +
Sbjct: 297 EVKKESTLKSVLSA---------LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347

Query: 146 EEQRREAASKVR---SLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202
                     +R   SL   N + R  L     +  L   L         ++   L NL 
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 203 IGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPII 256
             N  ++ A+   GAV  +  LI S    +  ++    A    L  L +N+P  
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAMGSAA---ALRNLMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           L+ +++ L+S S      A   + +L+  N + +  L  +GA+  L  ++  +     + 
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440

Query: 194 SLYALLNLGIGNDLNK 209
           S  AL NL        
Sbjct: 441 SAAALRNLMANRPAKY 456

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  115 bits (290), Expect = 1e-28
 Identities = 58/323 (17%), Positives = 119/323 (36%), Gaps = 33/323 (10%)

Query: 122 SEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181
           +  + +E     +      + +  E Q   A   +  L+  + E R  +  LG +  +A 
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAE 80

Query: 182 MLDFQLADSQISSLY-----------ALLNLGIGNDLNKAAIV-KAGAVHKMLKLIESPV 229
           +L        +++ +           AL NL  G+  NKA +    G +  ++  ++S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-- 138

Query: 230 APNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA 287
             +  + + I +    LS      +K  +   G+V  L++              +  L A
Sbjct: 139 -ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSA 194

Query: 288 LYNLSIFPSN--ISFILETDLIRYLLEMLGD---------MELSERILSILSNLVSTPEG 336
           L+NLS   +            + +L+  L           +E    IL  +S+L++T E 
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254

Query: 337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL 396
            + I R  +    L+  L  + S      A   L  ++ ++  D++A+ + G  S L  L
Sbjct: 255 HRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313

Query: 397 TLLGSTLAQKRASRILECLRVDK 419
                 +    ++  L  L  ++
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANR 336

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  100 bits (250), Expect = 3e-23
 Identities = 48/262 (18%), Positives = 98/262 (37%), Gaps = 15/262 (5%)

Query: 143 SESEEQRREAASKVRSLAKENSETRVTL-AMLGAIPPLAGMLDFQLADSQISSLYALLNL 201
             S   RR A   + +L   +   + TL +M G +  L   L  +  D Q      L NL
Sbjct: 95  HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154

Query: 202 GIG-NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGS 258
               +  +K  + + G+V  +++          S  +++++    LSA  +     I   
Sbjct: 155 SWRADVNSKKTLREVGSVKALMECALEV--KKESTLKSVLSALWNLSAHCTENKADICAV 212

Query: 259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF----PSNISFILETDLIRYLLEML 314
            GA+ FLV TL    +  +    +     L N+S        +   + E + ++ LL+ L
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272

Query: 315 --GDMELSERILSILSNL-VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM 371
               + +       L NL    P+ ++A+  +  A  +L ++++ +        ++  L 
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIH-SKHKMIAMGSAAALR 330

Query: 372 VMAHKSYGDRQAMIEAGIASAL 393
            +        +        S+L
Sbjct: 331 NLMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 91.4 bits (227), Expect = 2e-20
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 32/291 (10%)

Query: 148 QRREAASKVRSLAK----ENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGI 203
                   +  L +      +      A    +      +   +      ++  L+ L  
Sbjct: 3   HHHHHHM-LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 61

Query: 204 GNDLNKAAIVKAGAVHKMLKLIESPVA--------PNPSVSEAIVANFLGLSALDSN--K 253
             + ++ A+ + G +  + +L++             + ++          L+  D     
Sbjct: 62  DEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120

Query: 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF--PSNISFILETDLIRYLL 311
            +    G +  LV  LK+  + +    +Q     L NLS     ++   + E   ++ L+
Sbjct: 121 TLCSMKGCMRALVAQLKSESEDL----QQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176

Query: 312 EML---GDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNW---TDSPGCQE 364
           E           + +LS L NL +   E +  I  V  A   LV  L +   T++    E
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236

Query: 365 KASYVLMVMAHKSYGD---RQAMIEAGIASALLELTLLGSTLAQKRASRIL 412
               +L  ++     +   RQ + E      LL+     S      A   L
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 28/188 (14%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAA--SEIKKKEEALEEL-KIVVKDLQSES 145
             +K    K              L NL+       ++I   + AL  L   +    Q+ +
Sbjct: 181 EVKKESTLKSVLSA---------LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231

Query: 146 EEQRREAA---SKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLG 202
                        V SL   N + R  L     +  L   L         ++   L NL 
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

Query: 203 IGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP-------I 255
             N  ++ A+   GAV  +  LI S    +  ++    A    L  L +N+P       I
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHS---KHKMIAMGSAA---ALRNLMANRPAKYKDANI 345

Query: 256 IGSSGAVP 263
           +    ++P
Sbjct: 346 MSPGSSLP 353

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  111 bits (281), Expect = 1e-28
 Identities = 48/207 (23%), Positives = 95/207 (45%), Gaps = 19/207 (9%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           L  +V+ L S  +++ + A  K+  +A   +E    +   GA+P L  +L          
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSV-SEAIVANFLGLSAL--- 249
           +L+AL N+  G +    A++ AGA+  +++L+ S   PN  +  EA+ A    LS +   
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWA----LSNIASG 126

Query: 250 -DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLI 307
            +     +  +GA+P LV+ L + ++++     Q+AL AL N++         + E   +
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 308 RYLLEML--GDMELSERILSILSNLVS 332
             L ++    + ++ +     L  L S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNP 233
             +P +   L+        S+L  L  +  G +    A++ AGA+  +++L+ S   PN 
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS---PNE 68

Query: 234 SVSEAIVANFLGLSAL-DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292
            + +  +     +++  +     +  +GA+P LV+ L + ++++     Q+AL AL N++
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI----LQEALWALSNIA 124

Query: 293 -IFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPI 349
                 I  +++   +  L+++L   + ++ +  L  LSN+ S    +K   +   A   
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEK 184

Query: 350 LVDVLNWTDSPGCQEKASYVLMVMA 374
           L  + +  ++   Q++A   L  + 
Sbjct: 185 LEQLQS-HENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 249 LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLI 307
           +  +         +P +V+ L + D++      Q ALR L  ++   +  I  +++   +
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQE----LQSALRKLSQIASGGNEQIQAVIDAGAL 56

Query: 308 RYLLEML--GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQE 364
             L+++L   + ++ +  L  LSN+ S   E  +A+     A P LV +L+ + +    +
Sbjct: 57  PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLS-SPNEQILQ 114

Query: 365 KASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
           +A + L  +A       QA+I+AG   AL++L    +    + A   L  +
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  116 bits (291), Expect = 5e-28
 Identities = 54/290 (18%), Positives = 115/290 (39%), Gaps = 14/290 (4%)

Query: 134 LKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           +   V  L  ++    + E+A  + ++A   SE    +   GAIP    +L    A    
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161

Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252
            +++AL N+       +  ++K GA+  +L L+  P     +           LS L  N
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT-WTLSNLCRN 220

Query: 253 K----PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFILETDLI 307
           K    P+      +P LV+ L ++D +V      D+  A+  L+      I  +++  ++
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEV----LADSCWAISYLTDGPNERIEMVVKKGVV 276

Query: 308 RYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
             L+++LG  ++ +    L  + N+V+  + +        A  +   +L        Q++
Sbjct: 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKE 335

Query: 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
           A++ +  +        Q ++  G+   L+ +        QK A+  +   
Sbjct: 336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  106 bits (265), Expect = 1e-24
 Identities = 68/345 (19%), Positives = 120/345 (34%), Gaps = 16/345 (4%)

Query: 79  ESRGVDSEKGNGRKPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVV 138
            S G+       ++    K  +  +   +   D  + A  +  S       ++E++   V
Sbjct: 7   HSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDI---V 63

Query: 139 KDLQSESEEQRREAASKVRSLA-KENSETRVTLAMLGAIPPLAGMLDFQ-LADSQISSLY 196
           K + S + E + +A    R L  +E       +   G IP     L     +  Q  S +
Sbjct: 64  KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAW 123

Query: 197 ALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKP 254
           AL N+  G      A+V  GA+   + L+ S   P+  +SE      LG  A D    + 
Sbjct: 124 ALTNIASGTSEQTKAVVDGGAIPAFISLLAS---PHAHISEQ-AVWALGNIAGDGSAFRD 179

Query: 255 IIGSSGAVPFLVKTLKNSDKKV-SPQAKQDALRALYNL-SIFPSNISFILETDLIRYLLE 312
           ++   GA+  L+  L   D    +    ++    L NL               ++  L+ 
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239

Query: 313 ML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL 370
           +L   D E+       +S L   P  R  +       P LV +L           A   +
Sbjct: 240 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG-ATELPIVTPALRAI 298

Query: 371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
             +   +    Q +I+AG  +    L     T  QK A+  +  +
Sbjct: 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNI 343

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 64.3 bits (156), Expect = 4e-11
 Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 20/230 (8%)

Query: 112 LLNLAEGEAASEIKKKEEALEE--LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVT 169
           +  L +G       + E  +++  +  +VK L +        A   + ++     E    
Sbjct: 256 ISYLTDGPNE----RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311

Query: 170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229
           +   GA+     +L     + Q  + + + N+  G       +V  G V  ++ ++    
Sbjct: 312 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371

Query: 230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
                 +   + N             +   G +  L+  L   D K+     Q  L A+ 
Sbjct: 372 FKTQKEAAWAITN-YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI----IQVILDAIS 426

Query: 290 NLSIF-------PSNISFILETDLIRYLLEMLG--DMELSERILSILSNL 330
           N+                I E   +  +  +    +  + +  L+++   
Sbjct: 427 NIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  108 bits (271), Expect = 2e-25
 Identities = 57/320 (17%), Positives = 117/320 (36%), Gaps = 16/320 (5%)

Query: 103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLA-K 161
                   D     E   +++ +   +  +EL  + + L S+  +++  A  K R +  +
Sbjct: 58  FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117

Query: 162 ENSETRVTLAMLGAIPPLAGML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHK 220
           E+      +   G +P L   + + Q    Q+ + +AL N+  G       +V A AV  
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPL 177

Query: 221 MLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSP 278
            ++L+ +    +  V E  +   LG  A DS   +  +    A+  ++    ++   +  
Sbjct: 178 FIQLLYT---GSVEVKEQAIW-ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL-- 231

Query: 279 QAKQDALRALYNLSIFPSNI-SFILETDLIRYLLEML--GDMELSERILSILSNLVSTPE 335
              + A   L NL         + + +  +  L +++   D E        +S L   P+
Sbjct: 232 --IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289

Query: 336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLE 395
                         LV++L+  +S   Q  A   +  +   +    Q +I AG+  AL  
Sbjct: 290 EAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348

Query: 396 LTLLGSTLAQKRASRILECL 415
           L        +K A   +  +
Sbjct: 349 LLSSPKENIKKEACWTISNI 368

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  105 bits (262), Expect = 3e-24
 Identities = 57/336 (16%), Positives = 126/336 (37%), Gaps = 22/336 (6%)

Query: 134 LKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           +  +V+ ++    E  + EAA  + ++A   S     +    A+P    +L     + + 
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--- 249
            +++AL N+   +   +  +++  A+  +L L  S     PS+          LS L   
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATW---TLSNLCRG 245

Query: 250 -DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS-IFPSNISFILETDLI 307
                     S A+P L K + + D +       DA  A+  LS      I  +++  + 
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYSMDTET----LVDACWAISYLSDGPQEAIQAVIDVRIP 301

Query: 308 RYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
           + L+E+L      +    L  + N+V+  + +  +       P L  +L+ +     +++
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKE 360

Query: 366 ASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVSG 425
           A + +  +   +    QA+I+A +   L++L  +     +K A   +        ++   
Sbjct: 361 ACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDI 420

Query: 426 TYGGNLVAAAAVSAPICGSSSSTSTNPNGVAKECLE 461
                 + +     P+C            V  + LE
Sbjct: 421 I---RYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 95.9 bits (238), Expect = 3e-21
 Identities = 53/330 (16%), Positives = 113/330 (34%), Gaps = 26/330 (7%)

Query: 93  PEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREA 152
              Q EA            L N+A G   S   K     + + + ++ L + S E + +A
Sbjct: 145 EMLQLEAAWA---------LTNIASGT--SAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 153 ASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI 212
              + ++A ++++ R  +    A+ P+ G+ +        ++ + L NL  G        
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253

Query: 213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSSGAVPFLVKTLKN 271
           V + A+  + KLI S    +             LS         +        LV+ L +
Sbjct: 254 VVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 272 SDKKVSPQAKQDALRALYNLSIF-PSNISFILETDLIRYLLEML--GDMELSERILSILS 328
               V    +  ALRA+ N+          ++   ++  L  +L      + +     +S
Sbjct: 311 ESTLV----QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366

Query: 329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR---QAMI 385
           N+ +    +       +  P LV +L        +++A + +   +          + ++
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425

Query: 386 EAGIASALLELTLLGSTLAQKRASRILECL 415
             G    L +L  +      +     LE +
Sbjct: 426 SQGCIKPLCDLLEIADNRIIEVTLDALENI 455

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  107 bits (268), Expect = 2e-25
 Identities = 39/276 (14%), Positives = 87/276 (31%), Gaps = 33/276 (11%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           +   V+ L S+ E+ +   A  ++    ++   +  +  LG I  L  +L     + Q +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253
           +  AL NL   +  NK    +   + + + L+      N  + + +      LS+ D  K
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSSTDELK 121

Query: 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEM 313
             + +  A+P L   +              +                             
Sbjct: 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSRE--------------------------- 153

Query: 314 LGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373
           + D E+       L NL S   GR+ +         L+  +    +    +  S    + 
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213

Query: 374 AHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS 409
                 +    ++A + +   +L         +++S
Sbjct: 214 VLH---NLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.8 bits (144), Expect = 9e-10
 Identities = 40/290 (13%), Positives = 85/290 (29%), Gaps = 29/290 (10%)

Query: 98  EAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVR 157
             +  +     L+D L        +  +  ++++E     +  L + S     E  ++ R
Sbjct: 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC---MCVLHNLSYRLDAEVPTRYR 231

Query: 158 SLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGA 217
            L           +  G     +  +     D  +            N      +  + A
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE-------TNPKGSGWLYHSDA 284

Query: 218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP------IIGSSGAVPFLVKTLKN 271
           +   L L+        +  EA       L+A            I      +P + + L++
Sbjct: 285 IRTYLNLMGKS--KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

Query: 272 SDKKVSPQAKQDALRALYNLSIFPSNISFILE---TDLIRYLLEMLGDMELSE----RIL 324
            +  V     +     L N+S  P     +      ++ R L    G+   SE       
Sbjct: 343 GNSDV----VRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC 398

Query: 325 SILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA 374
             + NL+++                ++++   + SP   E A  +L  M 
Sbjct: 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 59.5 bits (143), Expect = 1e-09
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 17/216 (7%)

Query: 89  NGRKPEKQKEAKGCVSKSEKLLD----LLNLAEGEAASEIKKKEEALEELKIVVKDLQ-S 143
           N R    +K + GC S     +        L E E   +        + ++  +  +  S
Sbjct: 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295

Query: 144 ESEEQRREAASKVRSLAKENSETRVTLAML-----GAIPPLAGMLDFQLADSQISSLYAL 198
           + +      A  +++L          ++ L       +P +A +L    +D   S    L
Sbjct: 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355

Query: 199 LNLGIGNDLNKAAIVKAGAVH--KMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPI 255
            N+   + L    +         ++L       + +  +  +       L A        
Sbjct: 356 SNMSR-HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414

Query: 256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291
             SS  +  ++   ++S    SP+A + A   L ++
Sbjct: 415 YFSSSMLNNIINLCRSSA---SPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 39/294 (13%), Positives = 93/294 (31%), Gaps = 20/294 (6%)

Query: 139 KDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYAL 198
              +    E    A   +R+L+  ++  +      G I  L   +   +A S+       
Sbjct: 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVE 209

Query: 199 LNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAI------------VANFLGL 246
             + + ++L+     +    ++ L+          S +                      
Sbjct: 210 NCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEE 269

Query: 247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS---NISFILE 303
                    +  S A+   +  +  S K  + +A   AL+ L       S   +    L+
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329

Query: 304 TDLIRYLLEML--GDMELSERILSILSNLVSTPEGRKAISR--VPDAFPILVDVLNWT-D 358
              +  +  +L  G+ ++     S+LSN+   P   + +     P+   +L      T +
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389

Query: 359 SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL 412
           S      A Y +  +        +    + + + ++ L    ++     A+R+L
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 93.9 bits (233), Expect = 5e-22
 Identities = 43/238 (18%), Positives = 83/238 (34%), Gaps = 33/238 (13%)

Query: 133 ELKIVVKDLQSES--EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADS 190
            L+  V  L+++     +   AA+ ++    + SE R  +  L  I  L  +L  Q  D 
Sbjct: 9   TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68

Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
           Q +   AL NL   ++ NK  + +   V ++L++++     +    + I      LS+ D
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQT--RDLETKKQITGLLWNLSSND 126

Query: 251 SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYL 310
             K ++ +   +      +        P+        L +  IF                
Sbjct: 127 KLKNLMITEALLTLTENIIIPFSG--WPEGDYPKANGLLDFDIF---------------- 168

Query: 311 LEMLGDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS 367
                       +   L N+ S   +GRKA+ R       LV  +  T +    +  +
Sbjct: 169 ----------YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 70.0 bits (171), Expect = 8e-14
 Identities = 35/197 (17%), Positives = 78/197 (39%), Gaps = 18/197 (9%)

Query: 112 LLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA 171
           + +    +  SE +K+   L  +  +++ L+ ++E+ +R     +R+L  E+++ ++ +A
Sbjct: 34  IQHECFQK--SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVA 91

Query: 172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI------ 225
            L  +P L  +L           +  LL     ND  K  ++    +     +I      
Sbjct: 92  ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGW 151

Query: 226 --ESPVAPNPSVSEAIVANFLG----LSALDSNKP--IIGSSGAVPFLVKTLKNSDKKVS 277
                   N  +   I  N  G    +S+  ++    +    G +  LV  ++ +     
Sbjct: 152 PEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

Query: 278 PQAK--QDALRALYNLS 292
           P  K  ++ +  L+NLS
Sbjct: 212 PDDKATENCVCILHNLS 228

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 92.7 bits (229), Expect = 4e-20
 Identities = 63/340 (18%), Positives = 114/340 (33%), Gaps = 57/340 (16%)

Query: 133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           EL  V+  L    +  +  AA+ ++ L   N + +  +  L  IP L G+LD    +  +
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 193 SSLYALLNLGIG-NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS 251
            +  AL N+  G +  NK AI     V  +++L+    A +  ++E I      LS+ DS
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK--ARDMDLTEVITGTLWNLSSHDS 166

Query: 252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDAL--------------RALYNLSIFPSN 297
            K  I    A+  L   +         +  +D                  L N+S   S 
Sbjct: 167 IKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225

Query: 298 --ISFILETDLIRYLLEMLG---------------------------------DMELSER 322
                     L+  L+ ++                                       E 
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285

Query: 323 ILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMA----HKSY 378
             ++ +N  ++P     +   P+   I + +L  + +P   E ++  +  +         
Sbjct: 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR 345

Query: 379 GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD 418
             R A+ +    SA+ +L         K AS  L  L VD
Sbjct: 346 YIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD 385

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 78.1 bits (191), Expect = 2e-15
 Identities = 49/291 (16%), Positives = 94/291 (32%), Gaps = 35/291 (12%)

Query: 128 EEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQL 187
           E  + E     +   +   +  R + + + SL K              +P +  ML F+L
Sbjct: 4   EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQ--PELPEVIAMLGFRL 61

Query: 188 ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS 247
              + ++   L +L   ND  K  + K   +  ++ L++    P   V          +S
Sbjct: 62  DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH---PKKEVHLGACGALKNIS 118

Query: 248 ALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD 305
                 NK  I +   VP LV+ L+ +         +     L+NLS   S         
Sbjct: 119 FGRDQDNKIAIKNCDGVPALVRLLRKARD---MDLTEVITGTLWNLSSHDSI-------- 167

Query: 306 LIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
                      ME+ +  L  L++ V  P          D  P  +      +       
Sbjct: 168 ----------KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI------EWESVLTN 211

Query: 366 ASYVLMVMAHKSYGDRQAMIEA-GIASALLELTLLGSTLAQKRASRILECL 415
            +  L  ++ +    R+ + E  G+  AL+ +           +  +  C+
Sbjct: 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 58.8 bits (141), Expect = 2e-09
 Identities = 27/160 (16%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 142 QSESEEQRREAASKVRSLAKEN----SETRVTLAMLGAIPPLAGMLDFQLADSQISSLYA 197
           +S++      +A  +++L           R  L    A+  +A +L  +      ++  A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378

Query: 198 LLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLG-----LSALDSN 252
           L NL + +  NK  I K    + +  L       + + SE  V + L      ++     
Sbjct: 379 LRNLAV-DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS 292
              +  +  +  LV   K+ ++  S +  + A   L  + 
Sbjct: 438 AKKLRETQGIEKLVLINKSGNR--SEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 53.4 bits (127), Expect = 1e-07
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 158 SLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS---SLYALLNLGIGNDLNKAAIVK 214
            + +++S++++    +  +  L+  +  ++  ++     +     N G         + +
Sbjct: 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306

Query: 215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKP-----IIGSSGAVPFLVKTL 269
              V   + L++   +  P++ EA       L A            +    A+  +   L
Sbjct: 307 PEVVRIYISLLK--ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364

Query: 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILET---DLIRYLLEMLGDM------ELS 320
            N  ++V     + A  AL NL++   N   I +    +L++ L     +       +  
Sbjct: 365 TNEHERV----VKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420

Query: 321 ERILSILSNLVST-PEGRKAISRVPDAFPILVDVL-NWTDSPGCQEKASYVLMVMAH 375
             IL+ ++ +++   E  K +         LV +  +   S      A+ VL  +  
Sbjct: 421 ISILNTINEVIAENLEAAKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 16/154 (10%)

Query: 112 LLNLAEGEAASEIKKKEEALEE--LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVT 169
           + NL  G        +    +E  L  +   L +E E   + A+  +R+LA  ++  +  
Sbjct: 333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV-DARNKEL 391

Query: 170 LAMLGAIPPLAGML--------DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKM 221
           +    AIP L   L             D+ IS L  +  +   N      + +   + K+
Sbjct: 392 IGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL 450

Query: 222 LKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI 255
           + + +S       V  A +     L  +   K +
Sbjct: 451 VLINKSGNRSEKEVRAAALV----LQTIWGYKEL 480

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.2 bits (228), Expect = 7e-20
 Identities = 53/310 (17%), Positives = 104/310 (33%), Gaps = 16/310 (5%)

Query: 116 AEGEAASEIKKKEEALEELKIV---VKDLQSESEEQRREAASKVRSLAKENSETRVTLAM 172
            E +    I K+   L    I        ++ES   +   A  + ++     E R  +  
Sbjct: 476 HELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQ 534

Query: 173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGND--LNKAAIVKAGAVHKMLKLIESPVA 230
            G +  L  M        +  +  AL  +GI  +  ++ +       +  +L L++    
Sbjct: 535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594

Query: 231 PNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN 290
                 E+++A     S  +S +  I     V  +   L      +     + A + L N
Sbjct: 595 ALE-NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL----TRAAAQCLCN 649

Query: 291 LSIFPSNIS-FILETDLIRYLLEMLG--DMELSERILSILSNLVST-PEGRKAISRVPDA 346
           L +    I  F    D +++L  +    D E +      L+ + S   +  + I  +   
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 347 FPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK 406
             IL  ++    SP  Q +   +++ M +      + + E  I   L  L  L      K
Sbjct: 710 LDILHTLIA-NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAK 768

Query: 407 RASRILECLR 416
                 +CL 
Sbjct: 769 AREVATQCLA 778

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 74.5 bits (182), Expect = 3e-14
 Identities = 44/307 (14%), Positives = 100/307 (32%), Gaps = 23/307 (7%)

Query: 113 LNLAEGEAASEIKKKEEALEELKIVVKDL---QSESEEQRREAASKVRSLAKENSETRVT 169
           L    G+ A+     + A  +L    +       + ++ RR AA  +  L  +       
Sbjct: 357 LGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416

Query: 170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPV 229
           +    +I  L  +            +   +NL    +  +        + +M++L +   
Sbjct: 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE-------MLPEMIELAKFAK 469

Query: 230 APNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY 289
              P   E        +  ++    ++ + G    L    K      S  +++   R L 
Sbjct: 470 QHIPEEHE-----LDDVDFINKRITVLANEGITTALCALAKTE----SHNSQELIARVLN 520

Query: 290 NLSIFPSNISFILETDLIRYLLEML--GDMELSERILSILSNLVST--PEGRKAISRVPD 345
            +         +++   ++ LL M   G  +        L+ +  T  PE   +  R  D
Sbjct: 521 AVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD 580

Query: 346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ 405
               L+++L    +     ++   L  +A  +   RQ +I+    S +    +       
Sbjct: 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640

Query: 406 KRASRIL 412
           + A++ L
Sbjct: 641 RAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 73.0 bits (178), Expect = 1e-13
 Identities = 41/254 (16%), Positives = 85/254 (33%), Gaps = 15/254 (5%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLA--KENSETRVTLAMLGAIPPLAGMLDFQL-ADS 190
           +K +++     +E+ +R A   +  +        +      L  I PL  +L     A  
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597

Query: 191 QISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD 250
              SL AL NL   N+  +  I+K   V K+   +      +  ++ A       L   +
Sbjct: 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED---HLYLTRAAAQCLCNLVMSE 654

Query: 251 SN-KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFIL--ETDLI 307
              K   G++  V FL    ++ D++           AL  ++         +      +
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEET----ATACAGALAIITSVSVKCCEKILAIASWL 710

Query: 308 RYLLEML--GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEK 365
             L  ++      +  R + I+ N+++  E         D   +L  +    D    + +
Sbjct: 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAR 770

Query: 366 ASYVLMVMAHKSYG 379
                 + A + Y 
Sbjct: 771 EVATQCLAAAERYR 784

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 33/250 (13%), Positives = 75/250 (30%), Gaps = 21/250 (8%)

Query: 124 IKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAI--PPLAG 181
           + +  +   EL+    +   +        AS   +   EN       A         +  
Sbjct: 195 LCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKD 254

Query: 182 MLDFQLADSQISSLYALLNLGIGN-DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIV 240
            L     +S++    A+  L  G  D+    + + G +  +L +  +    +        
Sbjct: 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTD---DELQQRVAC 311

Query: 241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISF 300
              +  S+       +   G V  L +   + +       +  AL  L  L  +    + 
Sbjct: 312 ECLIAASSKKDKAKALCEQG-VDILKRLYHSKN----DGIRVRALVGLCKLGSYGGQDAA 366

Query: 301 I----------LETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPIL 350
           I          L     R+L++   D ++       L+ L    E ++ +     +   L
Sbjct: 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHAL 426

Query: 351 VDVLNWTDSP 360
           +D+    +  
Sbjct: 427 MDLARGGNQS 436

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 36/265 (13%)

Query: 97  KEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELK--------------------I 136
           ++ K C+    + +        +AA + +++E ALE L                     +
Sbjct: 28  EQMKSCLRVLSQPMPPTAGEAEQAADQ-QEREGALELLADLCENMDNAADFCQLSGMHLL 86

Query: 137 VVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADS-QISSL 195
           V + L++ +   R  AA  + + ++  +  +  +  LGA+  L  +LD    D+ ++ +L
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 196 YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKP 254
           +A+  L    +      ++      +++ ++        +          L      +K 
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---QVQKLKVKSAFLLQNLLVGHPEHKG 203

Query: 255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL-SIFPSNISFILET-----DLIR 308
            + S G V  LV  ++           +  L AL +L + FP  +    E      +L+R
Sbjct: 204 TLCSMGMVQQLVALVRTEH----SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 259

Query: 309 YLLEMLGDMELSERILSILSNLVST 333
           +  ++L   E  +  L     L+ T
Sbjct: 260 HRCQLLQQHEEYQEELEFCEKLLQT 284

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 58.9 bits (142), Expect = 1e-09
 Identities = 45/252 (17%), Positives = 77/252 (30%), Gaps = 16/252 (6%)

Query: 153 ASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQ--ISSLYALLNLGIGNDLNKA 210
            S +R    E  + +  L +L    P       Q AD Q    +L  L +L   N  N A
Sbjct: 17  GSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAA 75

Query: 211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGSSGAVPFLVKTL 269
              +   +H ++       A    +           S   +  +  +   GA+  L++ L
Sbjct: 76  DFCQLSGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133

Query: 270 KNSDKKVSPQAKQDALRALYNLSI-FPSNISFILETDLIRYLLEML--GDMELSERILSI 326
                      +  AL A+  L     + +   L  D    L+  +     +L  +   +
Sbjct: 134 DRDA---CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFL 190

Query: 327 LSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE 386
           L NL+      K           LV ++  T+     E     L  +        Q + E
Sbjct: 191 LQNLLVGHPEHKGTLCSMGMVQQLVALVR-TEHSPFHEHVLGALCSLVT---DFPQGVRE 246

Query: 387 AGIASALLELTL 398
                  LE  L
Sbjct: 247 CREPELGLEELL 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 5e-12
 Identities = 74/463 (15%), Positives = 129/463 (27%), Gaps = 154/463 (33%)

Query: 43  RKIFDAVSCGGSSRYGR---EILDD------EGISLPT--PKAKTEMESRGVDSEKGNGR 91
            ++F  +         +   E+L          I      P   T M     D    +  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN- 123

Query: 92  KPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELK----IVV-------KD 140
               Q  AK  VS+ +  L L                +AL EL+    +++       K 
Sbjct: 124 ----QVFAKYNVSRLQPYLKL---------------RQALLELRPAKNVLIDGVLGSGKT 164

Query: 141 ------LQSESEEQRREAASKVR--SLAKENSETRVTLAMLGAI-----PPLAGMLD--- 184
                   S   + + +   K+   +L   NS   V L ML  +     P      D   
Sbjct: 165 WVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSS 221

Query: 185 -----FQLADSQISSL-----Y--ALLNLGIGNDLNKAAIVKA----------------- 215
                     +++  L     Y   LL L    ++  A    A                 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 216 ----GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKN 271
                A    + L    +   P   ++++  +L     D                  L  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------------------LPR 320

Query: 272 SDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLV 331
                +P+           LSI   +I              +  D +L+  I S L+ L 
Sbjct: 321 EVLTTNPRR----------LSIIAESIR--DGLATWDNWKHVNCD-KLTTIIESSLNVL- 366

Query: 332 STPEGRK-----AISRVPDAFPILVDVLN--WTDSPGCQEKASYVLMVMAHKSYGDRQAM 384
              E RK     ++   P +  I   +L+  W D           +MV+ +K +  + ++
Sbjct: 367 EPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLH--KYSL 416

Query: 385 IEA-------GIASALLELTLLGSTLAQKRASRILECLRVDKG 420
           +E         I S  LEL +            I++   + K 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKT 458

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 39/331 (11%), Positives = 104/331 (31%), Gaps = 42/331 (12%)

Query: 124 IKKKEEALEELKIV---VKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA 180
           +   E+ +   +++    +++ + S   +++    + ++   +      LA  GA+  + 
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIIL 504

Query: 181 GML---DFQLADSQISSLYALLNLGIGND--LNKAAIVKAGAVHKMLKLIESPVAPNPSV 235
             L          +I    AL  + I  +  L         A+  + +L+      + + 
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564

Query: 236 SEA-----IVANFLGLSAL------------DSNKPIIGSSGAVPFLVKTLKNSDKKVSP 278
                   +  N+  L AL            +  K I+ +      +   + + +  +  
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL-- 622

Query: 279 QAKQDALRALYNLSIFPSNISFIL-------ETDLIRYLLEMLG--DMELSERILSILSN 329
             ++  L  + N+   P  I+                 L+++L   D+E    + +I +N
Sbjct: 623 --QRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680

Query: 330 LVST-PEGRKAISRVPDAFPILVDVL-NWTDSPGCQEKASYVLM-VMAHKSYGDRQAMIE 386
           + +T P   K +    +     + V  +  D    +++   +   +           +  
Sbjct: 681 IATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYP 740

Query: 387 AGIASALLELTLLGSTLAQKRASRILECLRV 417
               +  L+  L  S             + V
Sbjct: 741 LLQENQKLKDALNMSLKRGDSGPEFSAAIPV 771

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 42/173 (24%)

Query: 119 EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPP 178
           +AA+ ++   E +E     +K+LQ +S   RR AA    +L K   E         A+ P
Sbjct: 9   KAAAPLRADPEKVEMY---IKNLQDDSYYVRRAAA---YALGKIGDER--------AVEP 54

Query: 179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEA 238
           L   L  + A  + ++  AL  +G              AV  ++K ++     +  V ++
Sbjct: 55  LIKALKDEDAWVRRAAADALGQIG-----------DERAVEPLIKALKD---EDGWVRQS 100

Query: 239 IVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL 291
                    AL      IG   AV  L+K LK+ D  V    +  A  AL  +
Sbjct: 101 AAV------ALGQ----IGDERAVEPLIKALKDEDWFV----RIAAAFALGEI 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	519
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.98
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.97
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.81
3grl_A	651	General vesicular transport factor P115; vesicle t	99.5
3grl_A	651	General vesicular transport factor P115; vesicle t	99.49
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.28
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.2
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.2
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.17
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.02
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.99
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.95
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.88
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.84
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.8
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.61
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.53
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.52
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.48
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.45
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.35
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.22
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.22
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.2
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.12
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.08
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.07
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.03
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.99
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.86
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.86
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.77
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.76
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.69
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.58
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.52
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.5
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.43
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.38
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.32
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.22
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.68
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.06
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	95.88
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.38
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.27
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.99
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.53
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.32
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.2
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.49
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	92.48
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.33
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	91.87
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	91.22
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.13
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	90.79
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.03
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.78
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.74
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.96
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	87.52
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	86.44
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	85.19
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	83.6
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	83.41
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	82.95
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	81.98
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	81.88
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	80.95
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	80.38

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=6e-32  Score=293.32  Aligned_cols=368  Identities=17%  Similarity=0.189  Sum_probs=271.2

Q ss_pred             Hhhhhhhheecc-CCcccccccccccCCCC----CCcchhhhhcccCCCCCCCCC-------CCccchhhh------hch
Q 010064           41 FRRKIFDAVSCG-GSSRYGREILDDEGISL----PTPKAKTEMESRGVDSEKGNG-------RKPEKQKEA------KGC  102 (519)
Q Consensus        41 ~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~------~~~  102 (519)
                      -|++.|+.-+.. ++.|+||++..-..|+.    ++.++|....... +......       ......++.      +-+
T Consensus        12 ~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lv~~l~s~d~   90 (529)
T 3tpo_A           12 ARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPD-DATSPLQENRNNQGTVNWSVEDIVKGINSNNL   90 (529)
T ss_dssp             --------------------------------CCSCSCCCCCC----------------CGGGSSCCHHHHHHHHTSSCH
T ss_pred             HHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcc-cccChhhhccchhhhHHHHHHHHHHHhcCCCH
Confidence            378888877766 78888888887777766    6666654322111 1000000       000000000      113


Q ss_pred             hhHHHHHHHHHcc-cC-ChhhHHHHHhcchhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064          103 VSKSEKLLDLLNL-AE-GEAASEIKKKEEALEELKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL  179 (519)
Q Consensus       103 ~~~~~~l~aLl~l-s~-~e~~~~~i~~~g~~~~l~~Lv~~L~-s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L  179 (519)
                      ..+.+++..+.++ +. .....+.+.+.|+   ++.||+.|. +++++.|.+|+++|.+|+..+++.+..+.+.|+||+|
T Consensus        91 ~~q~~a~~~~rklLs~~~~~~i~~ii~~G~---ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~L  167 (529)
T 3tpo_A           91 ESQLQATQAARKLLSREKQPPIDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF  167 (529)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCCHHHHHHTTH---HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCchHHHHHHCCC---HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            3445555555554 22 2233456668888   999999996 4568899999999999999888889999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCChhhh-
Q 010064          180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSNKPII-  256 (519)
Q Consensus       180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~k~~I-  256 (519)
                      +.+|.+++.++++.|+++|+||+.+++.++..+++.|++++|+.++..+..  ....+...++++|.+++........+ 
T Consensus       168 v~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~  247 (529)
T 3tpo_A          168 ISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD  247 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            999999999999999999999999889999999999999999999987521  13456788999999999876554444 


Q ss_pred             hhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-
Q 010064          257 GSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-  332 (519)
Q Consensus       257 ~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-  332 (519)
                      ...+++|.|+.++.+    .+.+++.+|+|+|.+|+.+++ ....+++.|+++.|+.+|.+  ..++..++.+|+||+. 
T Consensus       248 ~~~~~lp~L~~LL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  323 (529)
T 3tpo_A          248 AVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  323 (529)
T ss_dssp             HHHHHHHHHHHHTTS----SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHhhHHHHHHHHhcC----CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence            347899999999988    799999999999999998876 56667789999999999964  4599999999999998 


Q ss_pred             CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       333 ~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      +++.+..+.+ .|+++.|+.+|. +.++.+++.|+|+|+||+.+++..++.+.+.|++|.|+.++.+++..+++.|+++|
T Consensus       324 ~~~~~~~i~~-~g~l~~L~~LL~-~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  401 (529)
T 3tpo_A          324 TDEQTQKVID-AGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI  401 (529)
T ss_dssp             CHHHHHHHHH-TTGGGGHHHHTT-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             chHHHHHHhh-cccHHHHHHHHc-CCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5667777888 799999999999 67899999999999999999899999999999999999999999999999999999


Q ss_pred             HHhhhc
Q 010064          413 ECLRVD  418 (519)
Q Consensus       413 ~~l~~~  418 (519)
                      .++...
T Consensus       402 ~nl~~~  407 (529)
T 3tpo_A          402 TNYTSG  407 (529)
T ss_dssp             HHHHHH
T ss_pred             HHHHcC
Confidence            999854

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=5.9e-33  Score=286.08  Aligned_cols=268  Identities=20%  Similarity=0.210  Sum_probs=235.2

Q ss_pred             hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHHHh
Q 010064          104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-----------ESEEQRREAASKVRSLAKENSETRVTLAM  172 (519)
Q Consensus       104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-----------~~~~~~~~Aa~~L~~La~~~~~~r~~l~~  172 (519)
                      .+++++++|.|++.+++++..+.+.|+   ++.|+.+|..           .+...|..|+++|++|+..+..+|..+..
T Consensus        48 ~~~~A~~aL~nls~d~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           48 QICPAVCVLMKLSFDEEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             THHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCC---HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            378999999999999999999999998   8888888842           24678999999999999988778888865


Q ss_pred             -cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcc-
Q 010064          173 -LGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLSA-  248 (519)
Q Consensus       173 -~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS~-  248 (519)
                       .|+||+||.+|+++++++++.|+++|.||+.+ ++.+|..|++.|+||.|+++| +++   +..+++.++++|++|+. 
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~---~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTT
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcc
Confidence             46699999999999999999999999999985 678999999999999999974 566   78999999999999998 


Q ss_pred             CCCChhhhh-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcCC--HHHHH
Q 010064          249 LDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLGD--MELSE  321 (519)
Q Consensus       249 ~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~  321 (519)
                      .+++|..|. ..|+||.|+.+|.......+..++..|+++|+||+.    +++++..+++.|++++|+.+|.+  .++++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            557888888 699999999999874111112689999999999995    66789999999999999999964  56999


Q ss_pred             HHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064          322 RILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       322 ~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~  379 (519)
                      .|+++|+||+. +++++..+.+ .|+++.|+++|. ++++.+++.|+++|.||+.+.+.
T Consensus       282 ~A~~aL~nLa~~~~~~~~~i~~-~G~i~~Lv~LL~-s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHH-TTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999996 7889999999 799999999998 67899999999999999988554

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=290.37  Aligned_cols=310  Identities=19%  Similarity=0.202  Sum_probs=260.7

Q ss_pred             hhhHHHHHHHHHcccCCh-hhHHHHHhcchh-------HHHHHHHHHhcCCC--H------------HHHHHHHHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGE-AASEIKKKEEAL-------EELKIVVKDLQSES--E------------EQRREAASKVRSL  159 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e-~~~~~i~~~g~~-------~~l~~Lv~~L~s~~--~------------~~~~~Aa~~L~~L  159 (519)
                      +..+.++.++|.|+.... +.....++.+.+       .....+++.+.+..  .            ..++.|+++|.++
T Consensus        96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl  175 (458)
T 3nmz_A           96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL  175 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence            466888999999997543 333333344443       12244556665442  1            1245899999999


Q ss_pred             hccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCChhhHHHHHh-cCcHHHHHHhhcC
Q 010064          160 AKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLGIGNDLNKAAIVK-AGAVHKMLKLIES  227 (519)
Q Consensus       160 a~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~-aG~v~~Lv~lL~s  227 (519)
                      +. ++++|..+.+.|++++|+.+|..           .++.++..|+++|.||+.+++.+|..+.. .|+||.|+++|++
T Consensus       176 s~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s  254 (458)
T 3nmz_A          176 SF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS  254 (458)
T ss_dssp             TT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred             cC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC
Confidence            85 47999999999999999999952           34678999999999999987778888875 5679999999998


Q ss_pred             CCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHH-h
Q 010064          228 PVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFIL-E  303 (519)
Q Consensus       228 ~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~-~  303 (519)
                      +   +.++++.++++|.+|+..  +++|..|.+.|+||.||++|...   .+..++..|+.+|+||+. +++++..++ .
T Consensus       255 ~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s---~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~  328 (458)
T 3nmz_A          255 E---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSALWNLSAHCTENKADICAV  328 (458)
T ss_dssp             S---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC---CSHHHHHHHHHHHHHHHHHCHHHHHHHHHS
T ss_pred             C---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC---CCHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence            8   899999999999999985  45789999999999999986542   688999999999999998 557888887 7


Q ss_pred             cCcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064          304 TDLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM  373 (519)
Q Consensus       304 ~g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL  373 (519)
                      .|++++|+.+|.+.      ++++.|+++|+||+.    ++++++.+.+ .|+++.|+++|. +++..+++.|+|+|+||
T Consensus       329 ~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~-~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLK-SHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSS-CSCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHc-CCChHHHHHHHHHHHHH
Confidence            89999999999532      489999999999994    8888999998 799999999999 67899999999999999


Q ss_pred             hcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064          374 AHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKG  420 (519)
Q Consensus       374 ~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~  420 (519)
                      +.+++++++.+.+.|+||.|++++..+++.+++.|.++|.+|.....
T Consensus       407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            98888999999999999999999999999999999999999996543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.7e-32  Score=292.58  Aligned_cols=284  Identities=17%  Similarity=0.184  Sum_probs=246.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.++++|++++.+.|..|++.|++|+..++..+..+.+.|+||+||.+|+++++.++..|+++|.||+.+++++|..|+
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~   83 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            78999999999999999999999999988878898899999999999999999999999999999999998899999999


Q ss_pred             hcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh--------cCCC----CCCHHH
Q 010064          214 KAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK--------NSDK----KVSPQA  280 (519)
Q Consensus       214 ~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~--------~~~~----~~~~~~  280 (519)
                      ++|+||.|+++|+ ++   +..+++.++++|++|+..+++|..|++ |++|.|+++|.        +...    ..+..+
T Consensus        84 ~~G~i~~Lv~lL~~~~---~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           84 RQNGIREAVSLLRRTG---NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HTTCHHHHHHHHTTCC---CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HcCCHHHHHHHHhhCC---CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            9999999999999 76   799999999999999999999999999 99999999993        2100    035677


Q ss_pred             HHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCC------------------
Q 010064          281 KQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--------MELSERILSILSNLVST------------------  333 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~------------------  333 (519)
                      +.+|+|+|+||+.+++++..+++. |++++|+.+|.+        ..+.+.++++|.||+..                  
T Consensus       160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            889999999999987799999998 999999999953        34788999999999731                  


Q ss_pred             ---------------------------------cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh
Q 010064          334 ---------------------------------PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD  380 (519)
Q Consensus       334 ---------------------------------~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~  380 (519)
                                                       +.+.+.+++ .++++.|+.+|.+++++.+++.|+|+|.|||.++..+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                             123334555 5788999999987778999999999999999875432


Q ss_pred             -----HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCc
Q 010064          381 -----RQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQ  422 (519)
Q Consensus       381 -----~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~  422 (519)
                           +..+.+.|++|.|++++.+++..+++.|.++|.+|..+.+.+
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~  365 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH
Confidence                 223446899999999999999999999999999999765444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=2.2e-32  Score=281.76  Aligned_cols=270  Identities=21%  Similarity=0.236  Sum_probs=240.0

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcCCChhhHHHHHh
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLGIGNDLNKAAIVK  214 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa~~~~~nk~~iv~  214 (519)
                      ...++.|+++|.+++.+ +++|..+.+.|++++|+.+|..           .++.++..|+++|.||+.+++.+|..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35678899999999965 7999999999999999999952           24779999999999999987889988865


Q ss_pred             -cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          215 -AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       215 -aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                       .|+||.|+++|+++   +.++++.++++|.+|+..  +++|..|.+.|+||.||++|...   .+..++..|+.+|+||
T Consensus       125 ~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~---~~~~~~~~A~~aL~nL  198 (354)
T 3nmw_A          125 MKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV---KKESTLKSVLSALWNL  198 (354)
T ss_dssp             CHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHCCC---CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence             46699999999998   899999999999999985  45789999999999999986442   6889999999999999


Q ss_pred             cC-CCccHHHHH-hcCcHHHHHHHcCCH------HHHHHHHHHHHHhcC----CcccHHHHhhcCCcchhhhhhccCCCC
Q 010064          292 SI-FPSNISFIL-ETDLIRYLLEMLGDM------ELSERILSILSNLVS----TPEGRKAISRVPDAFPILVDVLNWTDS  359 (519)
Q Consensus       292 s~-~~~n~~~l~-~~g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~----~~e~r~~i~~~~g~i~~Lv~lL~~s~~  359 (519)
                      +. +++++..++ ..|++++|+.+|.+.      ++++.|+++|.||+.    .+++++.+.+ .|+++.|+++|. +++
T Consensus       199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~-~~~  276 (354)
T 3nmw_A          199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLK-SHS  276 (354)
T ss_dssp             HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTT-CSC
T ss_pred             HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHc-CCC
Confidence            99 446888887 689999999999532      489999999999995    8889999888 799999999999 678


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCccc
Q 010064          360 PGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQVS  424 (519)
Q Consensus       360 ~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~~~  424 (519)
                      ..+++.|+++|.||+.+++++++.+.+.|+||.|++++..+++.+++.|.++|.+|......++.
T Consensus       277 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence            99999999999999988889999999999999999999999999999999999999976555443

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5e-31  Score=284.90  Aligned_cols=308  Identities=18%  Similarity=0.235  Sum_probs=264.2

Q ss_pred             hhhHHHHHHHHHcc-cC-ChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHH
Q 010064          102 CVSKSEKLLDLLNL-AE-GEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPP  178 (519)
Q Consensus       102 ~~~~~~~l~aLl~l-s~-~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~  178 (519)
                      +..+.+++.++.++ +. ...-.+.+.+.|+   ++.||++|+. ++++.|.+|+++|.+|+..+++.+..+++.|+||+
T Consensus        71 ~~~q~~a~~~~rklls~e~~ppi~~ii~~G~---ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~  147 (510)
T 3ul1_B           71 LESQLQATQAARKLLSREKQPPIDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  147 (510)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCHHHHHHTTH---HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHCCC---HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence            44455555555554 22 2223455668888   9999999974 56889999999999999988899999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCChhhh
Q 010064          179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSNKPII  256 (519)
Q Consensus       179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~k~~I  256 (519)
                      |+.+|++++.++++.|+++|+||+.+++.++..+++.|++++|+.++..+..  ....+...++++|.+++........+
T Consensus       148 Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~  227 (510)
T 3ul1_B          148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  227 (510)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHH
Confidence            9999999999999999999999999889999999999999999999987621  12456778999999999876554444


Q ss_pred             h-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064          257 G-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS  332 (519)
Q Consensus       257 ~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~  332 (519)
                      . ..+++|.|+.++.+    .+.+++..|+++|.+|+.+++ ....+++.|+++.|+.+|.+  ..++..++++|+||+.
T Consensus       228 ~~~~~~lp~L~~LL~~----~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~  303 (510)
T 3ul1_B          228 DAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  303 (510)
T ss_dssp             HHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence            3 47899999999988    799999999999999998876 55667788999999999964  4699999999999988


Q ss_pred             -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064          333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRI  411 (519)
Q Consensus       333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~  411 (519)
                       +++.+..+.+ .|+++.|+.+|. +.++.+++.|+|+|+||+.++..+++.+.+.|++|.|+.++.+++..+|+.|.++
T Consensus       304 ~~~~~~~~i~~-~g~l~~L~~LL~-~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a  381 (510)
T 3ul1_B          304 GTDEQTQKVID-AGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  381 (510)
T ss_dssp             SCHHHHHHHHH-TTGGGGCC-CTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHhh-ccchHHHHHHhc-CCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence             5667777888 799999999999 6789999999999999999989999999999999999999999999999999999


Q ss_pred             HHHhhhc
Q 010064          412 LECLRVD  418 (519)
Q Consensus       412 L~~l~~~  418 (519)
                      |.++...
T Consensus       382 L~Nl~~~  388 (510)
T 3ul1_B          382 ITNYTSG  388 (510)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            9999854

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.7e-30  Score=279.33  Aligned_cols=367  Identities=18%  Similarity=0.162  Sum_probs=278.5

Q ss_pred             hHHhhhhhhheecc-CCcccccccccccCCCC----CCcchhhhhcccCC--CC-CCCC-CCCc------cchhhhhchh
Q 010064           39 AAFRRKIFDAVSCG-GSSRYGREILDDEGISL----PTPKAKTEMESRGV--DS-EKGN-GRKP------EKQKEAKGCV  103 (519)
Q Consensus        39 ~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-~~~~-~~~~------~~~~~~~~~~  103 (519)
                      ...|++.|+. ++. ++.|++|++..-..|++    +.-++|........  +. .+.. ....      ...-..+-+.
T Consensus        11 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~s~~~~   89 (528)
T 4b8j_A           11 VEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMIGGVYSDDNN   89 (528)
T ss_dssp             -----------------CCCCC-----------------CCCC----------------------CHHHHHHHHTSSCHH
T ss_pred             hHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHHHHHcCCCHH
Confidence            3458889998 466 88899998888887776    56566654211100  00 0000 0000      0000011144


Q ss_pred             hHHHHHHHHHccc-CCh-hhHHHHHhcchhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          104 SKSEKLLDLLNLA-EGE-AASEIKKKEEALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       104 ~~~~~l~aLl~ls-~~e-~~~~~i~~~g~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      .+..++.+|.++. ... .....+...|+   ++.|+++|.+++ +..+..|+++|.+|+..+++.+..+.+.|++++|+
T Consensus        90 ~~~~A~~~L~~l~s~~~~~~~~~~~~~g~---v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~  166 (528)
T 4b8j_A           90 LQLEATTQFRKLLSIERSPPIEEVIQSGV---VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (528)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHTTC---HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHCCC---HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence            5667777777773 332 55666777888   999999999886 89999999999999988889999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhC
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSS  259 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~  259 (519)
                      .+|.++++.++..|+++|.||+.+++.++..+++.|+++.|+.++ .+.   +..++..++++|.+|+...+........
T Consensus       167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~  243 (528)
T 4b8j_A          167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHT---KLSMLRNATWTLSNFCRGKPQPSFEQTR  243 (528)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC---CHHHHHHHHHHHHHHHCSSSCCCHHHHT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC---CHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence            999999999999999999999998888999999999999999999 454   7899999999999999886555555679


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Ccc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPE  335 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e  335 (519)
                      |++|.|+.+|..    .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+  +.++..|+++|+||+. .+.
T Consensus       244 ~~l~~L~~lL~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~  319 (528)
T 4b8j_A          244 PALPALARLIHS----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA  319 (528)
T ss_dssp             THHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence            999999999988    799999999999999998876 45678889999999999964  4599999999999998 666


Q ss_pred             cHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064          336 GRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC  414 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~  414 (519)
                      .+..+.+ .|+++.|+.+|. +. ++.++..|+|+|.||+.++....+.+++.|++|.|+.++.++++.++..|.++|.+
T Consensus       320 ~~~~~~~-~~~l~~L~~lL~-~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~n  397 (528)
T 4b8j_A          320 QTQCIID-HQALPCLLSLLT-QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISN  397 (528)
T ss_dssp             HHHHHHT-TTHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hhhHHHHHHHHc-CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            7777887 799999999999 55 89999999999999999888888899999999999999999999999999999999


Q ss_pred             hhhc
Q 010064          415 LRVD  418 (519)
Q Consensus       415 l~~~  418 (519)
                      +...
T Consensus       398 l~~~  401 (528)
T 4b8j_A          398 ATSG  401 (528)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            9965

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.98  E-value=3.3e-31  Score=287.62  Aligned_cols=286  Identities=22%  Similarity=0.249  Sum_probs=243.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~i  212 (519)
                      ++.||++|.+++.+.|..|+++|++|+..+.++|..+++.|+||+||.+|++++.++++.|+++|.||+.+ +++||..|
T Consensus        50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I  129 (584)
T 3l6x_A           50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI  129 (584)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999995 69999999


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhc---C-----------CCCCCH
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKN---S-----------DKKVSP  278 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~---~-----------~~~~~~  278 (519)
                      +++|+||.|+.+|++..  +..+++.++++|++||.++++|..|++ ++||.|++++..   +           ....+.
T Consensus       130 ~~~GaIp~LV~LL~s~~--~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          130 KNCDGVPALVRLLRKAR--DMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHTTHHHHHHHHHHHCC--SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence            99999999999999731  688999999999999999999999985 579999998721   0           011367


Q ss_pred             HHHHHHHHHHHHhcCCCc-cHHHHHhc-CcHHHHHHHcCC--------HHHHHHHHHHHHHhcCCcc-------------
Q 010064          279 QAKQDALRALYNLSIFPS-NISFILET-DLIRYLLEMLGD--------MELSERILSILSNLVSTPE-------------  335 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~-n~~~l~~~-g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~~~e-------------  335 (519)
                      .++.+|+++|.||+...+ ++..+++. |+++.|+.+|.+        ...++.|+++|.||+...+             
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            999999999999998875 58888876 667899999842        3589999999999996411             


Q ss_pred             -------------cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh----hhHHHHHHcCcHHHHHHHhh
Q 010064          336 -------------GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY----GDRQAMIEAGIASALLELTL  398 (519)
Q Consensus       336 -------------~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~----~~~~~i~~~G~i~~Ll~Ll~  398 (519)
                                   +...++. .++++.|+.+|..+.++.+++.|+++|.|||.+..    ..+..+.+.|++|.|+.|+.
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~  365 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT  365 (584)
T ss_dssp             ---------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred             ccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence                         1122223 34566778899756789999999999999998752    23445667899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064          399 LGSTLAQKRASRILECLRVDKGKQV  423 (519)
Q Consensus       399 ~gs~~~~~~A~~~L~~l~~~~~~~~  423 (519)
                      .+++.+++.|.++|.+|..+.+.+.
T Consensus       366 s~~~~v~~~A~~aL~nLs~~~~~~~  390 (584)
T 3l6x_A          366 NEHERVVKAASGALRNLAVDARNKE  390 (584)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             CCCHHHHHHHHHHHHHHhCChhHHH
Confidence            9999999999999999998766554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.5e-30  Score=274.65  Aligned_cols=314  Identities=17%  Similarity=0.153  Sum_probs=265.3

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+.+++.+|.+++.+ +..+..+.+.|+   ++.|+++|++++...|..|+++|++|+..++++|..+++.|+||+|+
T Consensus        16 ~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~---i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv   92 (457)
T 1xm9_A           16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGG---ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV   92 (457)
T ss_dssp             THHHHHHHHHHHHHTSSCSSHHHHHHHTTH---HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence            55688899999999865 456778888888   99999999999999999999999999988789999999999999999


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc--------CCCC-----CCHHHHHHHHHHHHHh
Q 010064          181 GMLD-FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE--------SPVA-----PNPSVSEAIVANFLGL  246 (519)
Q Consensus       181 ~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~--------s~~~-----~~~~~~~~a~~aL~~L  246 (519)
                      ++|+ ++++++++.++++|+||+.+ +.+|..+++ |++|.|++++.        ++..     .+..+...|+++|.||
T Consensus        93 ~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL  170 (457)
T 1xm9_A           93 SLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL  170 (457)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH
Confidence            9999 88999999999999999997 889999999 99999999993        2200     1456677999999999


Q ss_pred             ccCCCChhhhhhC-CChHHHHHHhhcC------C-C--------------------------------------------
Q 010064          247 SALDSNKPIIGSS-GAVPFLVKTLKNS------D-K--------------------------------------------  274 (519)
Q Consensus       247 S~~~~~k~~I~~~-gai~~LV~lL~~~------~-~--------------------------------------------  274 (519)
                      +..++++..+.+. |+++.|+.+|.+.      + .                                            
T Consensus       171 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (457)
T 1xm9_A          171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF  250 (457)
T ss_dssp             TTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------
T ss_pred             ccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchh
Confidence            9987788888887 9999999888640      0 0                                            


Q ss_pred             --------------------------------------------CCCHHHHHHHHHHHHHhcCCCcc----H-HHHH-hc
Q 010064          275 --------------------------------------------KVSPQAKQDALRALYNLSIFPSN----I-SFIL-ET  304 (519)
Q Consensus       275 --------------------------------------------~~~~~~~~~A~~aL~nLs~~~~n----~-~~l~-~~  304 (519)
                                                                  ..++.++..|+|+|.||+.++..    . +.++ +.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~  330 (457)
T 1xm9_A          251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKE  330 (457)
T ss_dssp             ---------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTS
T ss_pred             hccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHc
Confidence                                                        12456778899999999986542    1 2334 68


Q ss_pred             CcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCC-----HHHHHHHHHHHHHHhcCC
Q 010064          305 DLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDS-----PGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       305 g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~A~~~L~nL~~~~  377 (519)
                      |+++.|+.+|.  +.+++..|+++|.||+.+++.+..|..  ++++.|+++|...+.     +++...++++|.|+..++
T Consensus       331 ~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~  408 (457)
T 1xm9_A          331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ  408 (457)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred             CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence            99999999995  456999999999999998877766654  799999999984322     368889999999999888


Q ss_pred             hhhHHHHHHcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhhcCCCc
Q 010064          378 YGDRQAMIEAGIASALLELTLLG-STLAQKRASRILECLRVDKGKQ  422 (519)
Q Consensus       378 ~~~~~~i~~~G~i~~Ll~Ll~~g-s~~~~~~A~~~L~~l~~~~~~~  422 (519)
                      +++.+.+.+.|+++.|++|+.++ ++++++.|.++|.++..+.+-|
T Consensus       409 ~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~  454 (457)
T 1xm9_A          409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence            88899999999999999999999 9999999999999988665433

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=2.8e-30  Score=289.05  Aligned_cols=305  Identities=14%  Similarity=0.073  Sum_probs=268.0

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHh-cchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh----------------
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKK-EEALEELKIVVKDLQSESEEQRREAASKVRSLAKENS----------------  164 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~-~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~----------------  164 (519)
                      ...+..++.+|..++.+...++.++. .|.   ++.||++|++++...+..|+++|.||+...+                
T Consensus       393 ~~v~~~AveaLayLS~~~~vk~~lv~d~g~---Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~  469 (810)
T 3now_A          393 KDIRRWAADGLAYLTLDAECKEKLIEDKAS---IHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAK  469 (810)
T ss_dssp             SSHHHHHHHHHHHHTTSHHHHHHHHHCHHH---HHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTC
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHccch---HHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhh
Confidence            45678889999999999888888864 566   9999999999999999999999999997531                


Q ss_pred             -------------hhH---HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC
Q 010064          165 -------------ETR---VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP  228 (519)
Q Consensus       165 -------------~~r---~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~  228 (519)
                                   ..+   ..+.+.|++|+|+.+|+++++.+++.|+|+|.||+. +++++..++++|++|+|+.+|+++
T Consensus       470 ~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~  548 (810)
T 3now_A          470 QHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG  548 (810)
T ss_dssp             CSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred             ccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC
Confidence                         123   577889999999999999999999999999999997 588999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCCCChhhhh---hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhc
Q 010064          229 VAPNPSVSEAIVANFLGLSALDSNKPIIG---SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP-SNISFILET  304 (519)
Q Consensus       229 ~~~~~~~~~~a~~aL~~LS~~~~~k~~I~---~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~  304 (519)
                         +...++.|+++|.+|+...+....+.   ..|++|+|+.+|...   .+...+..|+++|.||+..+ +++..+++.
T Consensus       549 ---~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a  622 (810)
T 3now_A          549 ---TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD---CTALENFESLMALTNLASMNESVRQRIIKE  622 (810)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC---CcHHHHHHHHHHHHHHhcCCHHHHHHHHHc
Confidence               78999999999999987644333321   246999999999863   45566779999999999986 488899999


Q ss_pred             CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 010064          305 DLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQ  382 (519)
Q Consensus       305 g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~  382 (519)
                      |+++.|+.+|.+  +.+++.|+++|+||+.+++.+..++...|.++.|+.++. +.+..+|+.|+|+|.||+.+++..++
T Consensus       623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~  701 (810)
T 3now_A          623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCE  701 (810)
T ss_dssp             THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            999999999953  459999999999999998888888853689999999999 67899999999999999997788889


Q ss_pred             HHHH-cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          383 AMIE-AGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       383 ~i~~-~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      .+++ .|++|.|+.|+.+++..+|++|.++|.++..
T Consensus       702 ~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            9998 9999999999999999999999999999985

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=276.23  Aligned_cols=269  Identities=20%  Similarity=0.202  Sum_probs=235.5

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccChhhHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-----------ESEEQRREAASKVRSLAKENSETRVTL  170 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-----------~~~~~~~~Aa~~L~~La~~~~~~r~~l  170 (519)
                      ...+++++++|.|++.+++++..+.+.|+   ++.|+.+|..           .+...+.+|+++|.+|+..++.++..+
T Consensus       162 ~~~~~qAv~aL~nls~~~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i  238 (458)
T 3nmz_A          162 EHQICPAVCVLMKLSFDEEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  238 (458)
T ss_dssp             TTTTHHHHHHHHHHTTSHHHHHHHHHTTH---HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHH
Confidence            45588999999999999999999999998   8888888842           245679999999999999887788877


Q ss_pred             Hh-cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHHHHhcCcHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhc
Q 010064          171 AM-LGAIPPLAGMLDFQLADSQISSLYALLNLGIG-NDLNKAAIVKAGAVHKMLKLI-ESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       171 ~~-~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~iv~aG~v~~Lv~lL-~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      .. .|+||+||.+|+++++++++.|+++|.||+.+ ++.+|..|+++|+||.|+++| .++   +..+++.++++|++|+
T Consensus       239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs  315 (458)
T 3nmz_A          239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK---KESTLKSVLSALWNLS  315 (458)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHc
Confidence            65 56699999999999999999999999999985 678999999999999999975 555   7899999999999999


Q ss_pred             c-CCCChhhhh-hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC----CCccHHHHHhcCcHHHHHHHcC--CHHH
Q 010064          248 A-LDSNKPIIG-SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI----FPSNISFILETDLIRYLLEMLG--DMEL  319 (519)
Q Consensus       248 ~-~~~~k~~I~-~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~----~~~n~~~l~~~g~v~~Lv~lL~--~~~v  319 (519)
                      . .++++..|. ..|+||.|+.+|.......+..++..|+++|+||+.    +++++..+++.|++++|+.+|.  +.++
T Consensus       316 ~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v  395 (458)
T 3nmz_A          316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI  395 (458)
T ss_dssp             HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHH
T ss_pred             cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHH
Confidence            8 667888888 699999999999874111112689999999999995    6678999999999999999995  4569


Q ss_pred             HHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          320 SERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       320 ~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                      ++.|+++|+||+. +++++..+++ .|+++.|+++|. ++++.+++.|+++|.||+.+++
T Consensus       396 ~~~A~~aL~nLa~~~~~~~~~i~~-~G~I~~Lv~LL~-s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          396 VSNACGTLWNLSARNPKDQEALWD-MGAVSMLKNLIH-SKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHH-HTHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999996 7889999999 799999999998 6889999999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=2.6e-29  Score=272.81  Aligned_cols=311  Identities=17%  Similarity=0.137  Sum_probs=261.0

Q ss_pred             hhhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~L  179 (519)
                      ...+.++..+|.+++. ++.++..+.+.|+   ++.||++|.+++.++|..|+++|++|+.. +.++|..+++.|+||+|
T Consensus        62 ~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~---Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~L  138 (584)
T 3l6x_A           62 DAVKSNAAAYLQHLCYRNDKVKTDVRKLKG---IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL  138 (584)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---HHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHcCC---cHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHH
Confidence            5678888899999985 7889999999998   99999999999999999999999999985 57999999999999999


Q ss_pred             HHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC---------------CCCCCHHHHHHHHHHH
Q 010064          180 AGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES---------------PVAPNPSVSEAIVANF  243 (519)
Q Consensus       180 v~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s---------------~~~~~~~~~~~a~~aL  243 (519)
                      |.+|++ .+.++++.++.+|+||+. ++.+|..|++ |++|.|++++..               ....+..+++.|+++|
T Consensus       139 V~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L  216 (584)
T 3l6x_A          139 VRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCL  216 (584)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHH
Confidence            999997 688999999999999999 5999999996 579999997720               0001578999999999


Q ss_pred             HHhccCCCC-hhhhhh-CCChHHHHHHhhcC----------------------------C--------------------
Q 010064          244 LGLSALDSN-KPIIGS-SGAVPFLVKTLKNS----------------------------D--------------------  273 (519)
Q Consensus       244 ~~LS~~~~~-k~~I~~-~gai~~LV~lL~~~----------------------------~--------------------  273 (519)
                      .||+...++ |..|.+ .|+++.||.++.+.                            .                    
T Consensus       217 ~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~  296 (584)
T 3l6x_A          217 RNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTS  296 (584)
T ss_dssp             HHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------C
T ss_pred             HHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccccc
Confidence            999987644 777777 46667888876530                            0                    


Q ss_pred             ----------------------CCCCHHHHHHHHHHHHHhcCCCc-----cHHHHHhcCcHHHHHHHcC--CHHHHHHHH
Q 010064          274 ----------------------KKVSPQAKQDALRALYNLSIFPS-----NISFILETDLIRYLLEMLG--DMELSERIL  324 (519)
Q Consensus       274 ----------------------~~~~~~~~~~A~~aL~nLs~~~~-----n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al  324 (519)
                                            ...++.+++.|++||.||+.+..     ++..+.+.++++.|+.+|.  +.++++.|+
T Consensus       297 ~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~  376 (584)
T 3l6x_A          297 PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS  376 (584)
T ss_dssp             CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred             CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence                                  01346677888888888876542     2233445689999999995  467999999


Q ss_pred             HHHHHhcCCcccHHHHhhcCCcchhhhhhccCCC-------CHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHh
Q 010064          325 SILSNLVSTPEGRKAISRVPDAFPILVDVLNWTD-------SPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELT  397 (519)
Q Consensus       325 ~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~-------~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll  397 (519)
                      ++|+||+.++.++..| . .|+++.|+++|.+..       +..++..|+++|.||+.+++++++.+.+.|+||.|+.++
T Consensus       377 ~aL~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL  454 (584)
T 3l6x_A          377 GALRNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLIN  454 (584)
T ss_dssp             HHHHHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH
Confidence            9999999988888776 5 589999999998542       467889999999999999999999999999999999999


Q ss_pred             hcC--CHHHHHHHHHHHHHhhhcC
Q 010064          398 LLG--STLAQKRASRILECLRVDK  419 (519)
Q Consensus       398 ~~g--s~~~~~~A~~~L~~l~~~~  419 (519)
                      .++  ++.+++.|.++|.+|..+.
T Consensus       455 ~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          455 KSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             hCCCCChHHHHHHHHHHHHHHcCH
Confidence            987  8999999999999998554

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.97  E-value=5.2e-28  Score=261.81  Aligned_cols=365  Identities=16%  Similarity=0.181  Sum_probs=289.5

Q ss_pred             hhhhhhhee-cc-CCcccccccccccCCCC----CCcchhhhhcc-----cCCCCC-----CCCCC-C-------ccchh
Q 010064           42 RRKIFDAVS-CG-GSSRYGREILDDEGISL----PTPKAKTEMES-----RGVDSE-----KGNGR-K-------PEKQK   97 (519)
Q Consensus        42 ~~~~~~~~~-~~-~~~r~~~~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~-----~~~~~-~-------~~~~~   97 (519)
                      |++.|+.-+ .. ++.|++|++..-..|+.    ++.++|.....     ...+..     ....+ .       ....-
T Consensus        17 ~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L   96 (530)
T 1wa5_B           17 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQL   96 (530)
T ss_dssp             GCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHHHHH
T ss_pred             HHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            677777755 33 78888888888777776    55555554211     000000     00000 0       00000


Q ss_pred             hhhchhhHHHHHHHHHcccCC--hhhHHHHHhcchhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcC
Q 010064           98 EAKGCVSKSEKLLDLLNLAEG--EAASEIKKKEEALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLG  174 (519)
Q Consensus        98 ~~~~~~~~~~~l~aLl~ls~~--e~~~~~i~~~g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G  174 (519)
                      ..+.+..+..++.+|.++...  +.....+.+.|.   ++.|++.|.++ ++.++..|+++|.+++..+++.+..+...|
T Consensus        97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~---i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  173 (530)
T 1wa5_B           97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV---VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  173 (530)
T ss_dssp             SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTC---HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCC---HHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence            011144566777777776432  344456667787   99999999987 899999999999999988888899999999


Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CCh
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNK  253 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k  253 (519)
                      ++++|+.+|+++++.++..|+++|.||+..++.++..++..|+++.|+.++.+.   +..++..++++|.+|+... +..
T Consensus       174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~L~~~~~~~~  250 (530)
T 1wa5_B          174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTLSNLCRGKKPQP  250 (530)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC---CHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999998889999999999999999999987   8999999999999999775 555


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNL  330 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL  330 (519)
                      ......+++|.|+.+|..    .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.  +..++..|+++|+||
T Consensus       251 ~~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l  326 (530)
T 1wa5_B          251 DWSVVSQALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  326 (530)
T ss_dssp             CHHHHGGGHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence            555668999999999987    689999999999999998764 6777888999999999995  455999999999999


Q ss_pred             cC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          331 VS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       331 s~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      +. .++....+.+ .|+++.|+.+|. ++++.++..|+|+|.||+.+++...+.+++.|++|.|+.++.++++.++..|.
T Consensus       327 ~~~~~~~~~~~~~-~~~l~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  404 (530)
T 1wa5_B          327 VTGNDLQTQVVIN-AGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  404 (530)
T ss_dssp             TTSCHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHH-cchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            98 5566677777 799999999999 56899999999999999998888888899999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 010064          410 RILECLRVD  418 (519)
Q Consensus       410 ~~L~~l~~~  418 (519)
                      ++|.+|...
T Consensus       405 ~aL~~l~~~  413 (530)
T 1wa5_B          405 WAISNASSG  413 (530)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999864

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=4.7e-30  Score=287.29  Aligned_cols=346  Identities=15%  Similarity=0.071  Sum_probs=276.8

Q ss_pred             hhHHHHHHHHHcccCC---hhhHHHHHhcchhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHh-cCCH
Q 010064          103 VSKSEKLLDLLNLAEG---EAASEIKKKEEALEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETRVTLAM-LGAI  176 (519)
Q Consensus       103 ~~~~~~l~aLl~ls~~---e~~~~~i~~~g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i  176 (519)
                      ..+..++.+|++++..   +.....+.+.+....++.++++|.++  +.+.+..|++.|..|+.. ++.|..++. .|++
T Consensus       345 ~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~I  423 (810)
T 3now_A          345 GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASI  423 (810)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchH
Confidence            4566777788888532   22222332222234477888888887  789999999999999954 578888875 7999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCh-----------------------------hhH---HHHHhcCcHHHHHHh
Q 010064          177 PPLAGMLDFQLADSQISSLYALLNLGIGND-----------------------------LNK---AAIVKAGAVHKMLKL  224 (519)
Q Consensus       177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~-----------------------------~nk---~~iv~aG~v~~Lv~l  224 (519)
                      |+||.+|++++..++..++++|.||+.+++                             .++   ..++++|++|.|+.+
T Consensus       424 p~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L  503 (810)
T 3now_A          424 HALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL  503 (810)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence            999999999999999999999999998643                             233   688999999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHH---
Q 010064          225 IESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFI---  301 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l---  301 (519)
                      ++++   ++.+++.|+++|.|++.+++++..+++.|++|+|+.+|.+    ++...+..|+|+|.||+.+.+....+   
T Consensus       504 L~s~---s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s----~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~  576 (810)
T 3now_A          504 AKTE---SHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE----GTEKGKRHATQALARIGITINPEVSFSGQ  576 (810)
T ss_dssp             HTCC---CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHSCHHHHTTTH
T ss_pred             HcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc----CCHHHHHHHHHHHHHHhcCCChhhhhcch
Confidence            9998   8999999999999999988899999999999999999998    68899999999999998765432221   


Q ss_pred             HhcCcHHHHHHHcCCH---HHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          302 LETDLIRYLLEMLGDM---ELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       302 ~~~g~v~~Lv~lL~~~---~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      ...+++++|+.+|.++   ..+..|+++|.||+.. ++.+..+++ .|+++.|+++|. ++++.+|+.|+++|+||+.+ 
T Consensus       577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~-  653 (810)
T 3now_A          577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMS-  653 (810)
T ss_dssp             HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTS-
T ss_pred             hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC-
Confidence            1246999999999643   2456899999999995 678889998 799999999999 67899999999999999997 


Q ss_pred             hhhHHHHHH-cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc-C-CCccccc-CCCcccccccccCccccCCCCCCCCCC
Q 010064          378 YGDRQAMIE-AGIASALLELTLLGSTLAQKRASRILECLRVD-K-GKQVSGT-YGGNLVAAAAVSAPICGSSSSTSTNPN  453 (519)
Q Consensus       378 ~~~~~~i~~-~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~-~-~~~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~  453 (519)
                      ++.+..+.+ .|+++.|+.|+..++..+|+.|+++|++|... + +.+.... +||        -.|+.           
T Consensus       654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~--------I~~Lv-----------  714 (810)
T 3now_A          654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW--------LDILH-----------  714 (810)
T ss_dssp             HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH--------HHHHH-----------
T ss_pred             hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC--------HHHHH-----------
Confidence            456666665 79999999999999999999999999999963 2 2222211 221        01111           


Q ss_pred             CcchhhhhHhhhhhHHHHHHHHHHHHHH
Q 010064          454 GVAKECLEEEEDMMSEEKKAVKQLVQQS  481 (519)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s  481 (519)
                         .++..++++++++|..++.|++..+
T Consensus       715 ---~LL~s~d~~vq~~A~~aL~NL~~~s  739 (810)
T 3now_A          715 ---TLIANPSPAVQHRGIVIILNMINAG  739 (810)
T ss_dssp             ---HHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             ---HHHCCCCHHHHHHHHHHHHHHHhCC
Confidence               1445567888999999999998744

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=9.8e-29  Score=266.95  Aligned_cols=304  Identities=17%  Similarity=0.175  Sum_probs=268.2

Q ss_pred             hhhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..|.+++++|.|++. +++++..+++.|+   ++.|+++|.+++.+++..|+++|.+|+.+++..|..+.+.|++++|+
T Consensus       115 ~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga---Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll  191 (510)
T 3ul1_B          115 SPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL  191 (510)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHH
Confidence            4567889999999964 5678888889998   99999999999999999999999999998889999999999999999


Q ss_pred             HhhcCCC-----HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hh
Q 010064          181 GMLDFQL-----ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KP  254 (519)
Q Consensus       181 ~lL~s~~-----~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~  254 (519)
                      .+|...+     ..++..++++|.|++.+...........|++|.|++++.++   +..++..++++|.+|+..++. ..
T Consensus       192 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~~  268 (510)
T 3ul1_B          192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIE  268 (510)
T ss_dssp             HHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhHH
Confidence            9998743     45788999999999996545455555578999999999998   899999999999999987654 45


Q ss_pred             hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhc
Q 010064          255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLV  331 (519)
Q Consensus       255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs  331 (519)
                      .+...|+++.|+.+|.+    .+..++..++++|.||+..++ +...+++.|+++.|+.+|.+  .++++.|+++|+||+
T Consensus       269 ~i~~~g~i~~Lv~lL~~----~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~  344 (510)
T 3ul1_B          269 MVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT  344 (510)
T ss_dssp             HHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHhcccchhhhhhhcC----CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            56789999999999998    699999999999999998776 67788899999999999964  459999999999999


Q ss_pred             C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      . .++.+..+.+ .|+++.|+.+|. ++++.++..|+|+|+||+.+ +.+++..+.+.|+++.|++++...+++++..+.
T Consensus       345 a~~~~~~~~v~~-~g~i~~Lv~lL~-~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L  422 (510)
T 3ul1_B          345 AGRQDQIQQVVN-HGLVPFLVGVLS-KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL  422 (510)
T ss_dssp             TSCHHHHHHHHH-TTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             cCcHHHHHHHHh-cCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence            8 6667777888 799999999999 67899999999999999974 567788899999999999999999999999999


Q ss_pred             HHHHHhhh
Q 010064          410 RILECLRV  417 (519)
Q Consensus       410 ~~L~~l~~  417 (519)
                      .+|.++..
T Consensus       423 ~aL~nil~  430 (510)
T 3ul1_B          423 DAISNIFQ  430 (510)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998873

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=1.8e-28  Score=265.97  Aligned_cols=304  Identities=17%  Similarity=0.179  Sum_probs=268.4

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+.+++++|.|++.+ ..+...+.+.|+   ++.|+.+|.+++.+++..|+++|.+|+.+++.+|..+.+.|++++|+
T Consensus       134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga---ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll  210 (529)
T 3tpo_A          134 SPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL  210 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHH
Confidence            45677888999999765 566778888888   99999999999999999999999999998889999999999999999


Q ss_pred             HhhcCCC-----HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hh
Q 010064          181 GMLDFQL-----ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KP  254 (519)
Q Consensus       181 ~lL~s~~-----~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~  254 (519)
                      .+|..++     ..+...++++|.|++.+...........|++|.|+.++.++   ++.++..++++|.+++..++. ..
T Consensus       211 ~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~a~~aL~~l~~~~~~~~~  287 (529)
T 3tpo_A          211 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIE  287 (529)
T ss_dssp             HTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHHHHHHHHHHhhhhhhhhHH
Confidence            9997643     45788999999999997555555555678999999999998   899999999999999987654 55


Q ss_pred             hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhc
Q 010064          255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLV  331 (519)
Q Consensus       255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs  331 (519)
                      .+...|++|.|+.+|.+    .+..++..|+.+|.||+.+++ +...+++.|+++.|+.+|.+  ++++..|+++|+||+
T Consensus       288 ~v~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~  363 (529)
T 3tpo_A          288 MVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT  363 (529)
T ss_dssp             HHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHhcC----CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            66789999999999998    699999999999999998765 77788899999999999964  459999999999999


Q ss_pred             C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      . .++.+..+.+ .|+++.|+.+|. ++++.++..|+|+|+||+.+ +.+++..+.+.|+|+.|++++...+++++..+.
T Consensus       364 ~~~~~~~~~v~~-~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L  441 (529)
T 3tpo_A          364 AGRQDQIQQVVN-HGLVPFLVGVLS-KADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL  441 (529)
T ss_dssp             TSCHHHHHHHHH-TTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             cccHHHHHHHHh-cCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence            8 6666777788 799999999999 67899999999999999974 567788899999999999999999999999999


Q ss_pred             HHHHHhhh
Q 010064          410 RILECLRV  417 (519)
Q Consensus       410 ~~L~~l~~  417 (519)
                      .+|.++..
T Consensus       442 ~aL~nil~  449 (529)
T 3tpo_A          442 DAISNIFQ  449 (529)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999873

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.96  E-value=4e-26  Score=240.07  Aligned_cols=303  Identities=18%  Similarity=0.185  Sum_probs=261.5

Q ss_pred             hhhHHHHHHHHHccc---CChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCH
Q 010064          102 CVSKSEKLLDLLNLA---EGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAI  176 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls---~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i  176 (519)
                      +..+..++..|.++.   .++..+..+ +. +.   ++.|++.|.++ +...+..|+++|.+++..+++....+.+.|++
T Consensus        34 ~~~r~~A~~~L~~l~~~~~~~~~~~~~-~~~~~---i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i  109 (450)
T 2jdq_A           34 PEQQLSATQKFRKLLSKEPNPPIDEVI-STPGV---VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV  109 (450)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSCCHHHHH-TSTTH---HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCc---HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence            445666776776652   233334433 44 66   99999999988 89999999999999998777788888899999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCC--CCh
Q 010064          177 PPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALD--SNK  253 (519)
Q Consensus       177 ~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~--~~k  253 (519)
                      +.|+.+|+++++.+++.|+++|.||+..++.++..+++.|+++.|+.++++ .   +..++..++++|.+++...  ..+
T Consensus       110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~  186 (450)
T 2jdq_A          110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN---RLTMTRNAVWALSNLCRGKSPPPE  186 (450)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC---CHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999999999888899999999999999999995 4   7899999999999999764  333


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP-SNISFILETDLIRYLLEMLG--DMELSERILSILSNL  330 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL  330 (519)
                      ..+. .+++|.|+.++.+    .+..++..++++|.||+... ++...+++.|+++.|+.+|.  +++++..|+++|+||
T Consensus       187 ~~~~-~~~l~~L~~~l~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          187 FAKV-SPCLNVLSWLLFV----SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             GGGT-GGGHHHHHHHTTC----CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHcc----CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            3333 8899999999987    68999999999999999875 47777888999999999996  456999999999999


Q ss_pred             cCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          331 VST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       331 s~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      +.. ++.++.+.+ .|+++.|+.+|. +.++.++..|+++|.||+.+++...+.+++.|++|.|+.++.++++.+|..|.
T Consensus       262 ~~~~~~~~~~~~~-~~~l~~L~~ll~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          262 VTGDDIQTQVILN-CSALQSLLHLLS-SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             TTSCHHHHHHHHT-TTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhCChHHHHHHHH-CccHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            984 445566777 699999999999 57899999999999999998888888899999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 010064          410 RILECLRVD  418 (519)
Q Consensus       410 ~~L~~l~~~  418 (519)
                      ++|.++...
T Consensus       340 ~~L~~l~~~  348 (450)
T 2jdq_A          340 WAITNATSG  348 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcC
Confidence            999999854

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.95  E-value=1.4e-26  Score=250.07  Aligned_cols=304  Identities=20%  Similarity=0.208  Sum_probs=269.2

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+..++.+|.+++.+ +.++..+...|+   ++.|+++|.+++..++..|+++|.+|+..++.++..+...|++++|+
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~---i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll  208 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGA---VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLL  208 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCc---HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHH
Confidence            45677888899999875 677777877787   99999999999999999999999999988888999999999999999


Q ss_pred             Hhh-cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-hhhhh
Q 010064          181 GML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-PIIGS  258 (519)
Q Consensus       181 ~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k-~~I~~  258 (519)
                      .+| .+.+..++..++++|.||+... .+.......|++|.|+.++.++   +..++..++++|.+|+...+.+ ..+.+
T Consensus       209 ~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~  284 (528)
T 4b8j_A          209 AQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSN---DEEVLTDACWALSYLSDGTNDKIQAVIE  284 (528)
T ss_dssp             HTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999 6689999999999999999864 4444555689999999999988   8999999999999999776543 56678


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC---CHHHHHHHHHHHHHhcC-C
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG---DMELSERILSILSNLVS-T  333 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~---~~~v~~~Al~~L~nLs~-~  333 (519)
                      .|+++.|+.+|..    .+..++..|+++|.||+.+.+ ....+++.|+++.|+.+|.   ++.++..|+++|+||+. .
T Consensus       285 ~g~v~~Lv~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~  360 (528)
T 4b8j_A          285 AGVCPRLVELLLH----PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN  360 (528)
T ss_dssp             TTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC
T ss_pred             cCHHHHHHHHHcC----CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC
Confidence            9999999999998    689999999999999998665 6777889999999999994   45699999999999998 5


Q ss_pred             cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      ++....+.+ .|+++.|+.+|. ++++.++..|+++|.||+.. +++.+..+.+.|+++.|+.++..+++.++..|..+|
T Consensus       361 ~~~~~~~~~-~~~i~~L~~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L  438 (528)
T 4b8j_A          361 KDQIQAVIN-AGIIGPLVNLLQ-TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL  438 (528)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            566777788 799999999998 56899999999999999986 677888899999999999999999999999999999


Q ss_pred             HHhhhc
Q 010064          413 ECLRVD  418 (519)
Q Consensus       413 ~~l~~~  418 (519)
                      .+|...
T Consensus       439 ~~l~~~  444 (528)
T 4b8j_A          439 ENILKV  444 (528)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999843

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=1.3e-26  Score=249.12  Aligned_cols=306  Identities=17%  Similarity=0.135  Sum_probs=258.2

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +..+..++.+|.+++.++.++..+.+.|+   ++.|+++|++++...+..|++.|.+|+..++..+..+.+.|++|.|+.
T Consensus        74 ~~~~~~a~~~L~~ls~~~~~~~~i~~~g~---i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  150 (529)
T 1jdh_A           74 VETARCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCchhHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHH
Confidence            45677788899999988888888888877   999999999999999999999999999887788888989999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA  261 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga  261 (519)
                      +|++++..++..++.+|.|++.++++++..+++.|+++.|+.+++++.  .......++.+|.+|+..++++..+.+.|+
T Consensus       151 ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~  228 (529)
T 1jdh_A          151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  228 (529)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred             HHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence            999999999999999999999988999999999999999999998763  466777888999999998888888888888


Q ss_pred             hHHHHHHhhcC-----------------------------------CCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcC
Q 010064          262 VPFLVKTLKNS-----------------------------------DKKVSPQAKQDALRALYNLSIFPS-NISFILETD  305 (519)
Q Consensus       262 i~~LV~lL~~~-----------------------------------~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g  305 (519)
                      ++.|+.++...                                   ....+++++..|+++|.||+.++. ++..+.+.|
T Consensus       229 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  308 (529)
T 1jdh_A          229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            87777666542                                   012578888999999999988754 888899999


Q ss_pred             cHHHHHHHcCC----HHHHHHHHHHHHHhcCC-cc---cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          306 LIRYLLEMLGD----MELSERILSILSNLVST-PE---GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       306 ~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~-~e---~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      +++.|+.+|.+    +++++.|+.+|+||+.. ++   .+..+.+ .|+++.|+.+|.+..++.++..++|+|.|++.+ 
T Consensus       309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-  386 (529)
T 1jdh_A          309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-  386 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-
T ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC-
Confidence            99999999942    57999999999999884 33   4667888 799999999999544569999999999999987 


Q ss_pred             hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064          378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRILEC  414 (519)
Q Consensus       378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~  414 (519)
                      +.+++.+.+.|++|.|+.++.++++.+|+.|.|++.+
T Consensus       387 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n  423 (529)
T 1jdh_A          387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ  423 (529)
T ss_dssp             GGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence            5667889999999999999999999999999999887

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.2e-26  Score=222.72  Aligned_cols=238  Identities=24%  Similarity=0.311  Sum_probs=219.4

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCC
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSN  252 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~  252 (519)
                      |.++.|+.+|++++++++..|+++|.+++..+++++..+++.|+++.|+.+++++   +..++..++++|.+++.. +++
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChHH
Confidence            6799999999999999999999999999998788999999999999999999998   899999999999999987 677


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHH
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI-FPSNISFILETDLIRYLLEMLGD--MELSERILSILSN  329 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~n  329 (519)
                      +..+.+.|+++.|+.++.+    .+..++..|+++|.||+. .++++..+++.|+++.|+.+|.+  ++++..++++|+|
T Consensus        79 ~~~~~~~~~i~~l~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~  154 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN  154 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTC----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            8889999999999999998    689999999999999995 45688889999999999999964  5699999999999


Q ss_pred             hcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          330 LVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       330 Ls~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                      |+. .++.+..+.+ .|+++.|+.+|. ++++.++..|+++|.||+.+++..++.+.+.|+++.|++++.++++.+++.|
T Consensus       155 l~~~~~~~~~~~~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  232 (252)
T 4hxt_A          155 IASGPDEAIKAIVD-AGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA  232 (252)
T ss_dssp             HTTSCHHHHHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHcCCHHHHHHHHH-CcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHH
Confidence            998 5555677777 799999999999 6789999999999999999888889999999999999999999999999999


Q ss_pred             HHHHHHhhhcCC
Q 010064          409 SRILECLRVDKG  420 (519)
Q Consensus       409 ~~~L~~l~~~~~  420 (519)
                      .++|.+|.....
T Consensus       233 ~~~L~~l~~~~~  244 (252)
T 4hxt_A          233 QRALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHHTCB
T ss_pred             HHHHHHHHcCCC
Confidence            999999996543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.95  E-value=2.9e-26  Score=246.34  Aligned_cols=303  Identities=22%  Similarity=0.221  Sum_probs=266.8

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L  179 (519)
                      +..+..++..|.+++.++.++..+... +.   ++.|++.|.++ +.+.+..|+..|++|+.. ++++..+.+.|++++|
T Consensus        31 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~---i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L  106 (529)
T 1jdh_A           31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQM---VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPAL  106 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccHHHHHhCcch---HHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHH
Confidence            567888889999999888777665433 55   99999999755 889999999999999976 4799999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhh
Q 010064          180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGS  258 (519)
Q Consensus       180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~  258 (519)
                      +.+|+++++.++..++++|.||+.+++.++..+.+.|++|.|+++++++   +..++..++.+|.+++.. ++++..+.+
T Consensus       107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~~L~~la~~~~~~~~~i~~  183 (529)
T 1jdh_A          107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILA  183 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999999999999997778899999999999999999998   889999999999999874 567888889


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCccc
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEG  336 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~  336 (519)
                      .|+++.|+.++...   .....+..++.+|.||+.+++++..+++.|+++.|+.++.+  ++++..++++|.||+.....
T Consensus       184 ~~~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  260 (529)
T 1jdh_A          184 SGGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             TTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             CCCHHHHHHHHHhC---ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh
Confidence            99999999999985   67778888999999999998999999999999999999964  56899999999999985432


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG--STLAQKRASRILEC  414 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g--s~~~~~~A~~~L~~  414 (519)
                      ..  .. .++++.|+++|. +.++.+++.|+++|.||+.++++.++.+.+.|++|.|++++.+.  ++.++..|.++|.+
T Consensus       261 ~~--~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n  336 (529)
T 1jdh_A          261 QE--GM-EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  336 (529)
T ss_dssp             CS--CC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hH--HH-HhHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            22  12 478999999998 67899999999999999998888999999999999999999863  37999999999999


Q ss_pred             hhhc
Q 010064          415 LRVD  418 (519)
Q Consensus       415 l~~~  418 (519)
                      |...
T Consensus       337 l~~~  340 (529)
T 1jdh_A          337 LTSR  340 (529)
T ss_dssp             HTSS
T ss_pred             HHcC
Confidence            9854

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=6.5e-26  Score=238.41  Aligned_cols=304  Identities=20%  Similarity=0.207  Sum_probs=264.5

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+..++.+|.+++.. ..+...+.+.|.   ++.|++.|++++...+..|+++|.+|+..++..+..+.+.|++++|+
T Consensus        79 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  155 (450)
T 2jdq_A           79 CTLQFESAWVLTNIASGNSLQTRIVIQAGA---VPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL  155 (450)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHhCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence            45677888889898764 455555656676   99999999999999999999999999988888999999999999999


Q ss_pred             HhhcC-CCHHHHHHHHHHHHHhcCCC-hhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhh
Q 010064          181 GMLDF-QLADSQISSLYALLNLGIGN-DLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIG  257 (519)
Q Consensus       181 ~lL~s-~~~~~~~~a~~aL~NLa~~~-~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~  257 (519)
                      .+|++ .+..++..++++|.||+.+. +..+..++ .|++|.|+.++.++   +..++..++++|.+|+... +.+..+.
T Consensus       156 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~  231 (450)
T 2jdq_A          156 QLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWALSYLSDGPNDKIQAVI  231 (450)
T ss_dssp             HHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            99996 78999999999999999764 33333333 78999999999988   8999999999999999764 4466677


Q ss_pred             hCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-C
Q 010064          258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-T  333 (519)
Q Consensus       258 ~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~  333 (519)
                      ..|+++.|+.++..    .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+  +.++..|+++|+||+. .
T Consensus       232 ~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~  307 (450)
T 2jdq_A          232 DAGVCRRLVELLMH----NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN  307 (450)
T ss_dssp             HTTTHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             HcCcHHHHHHHHCC----CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            89999999999987    689999999999999998876 45667888999999999965  4599999999999997 6


Q ss_pred             cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      ++..+.+.+ .++++.|+.+|. ++++.++..|+|+|.||+.+ +++..+.+++.|++|.|++++..+++.++..|.++|
T Consensus       308 ~~~~~~~~~-~~~l~~L~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL  385 (450)
T 2jdq_A          308 RAQIQTVID-ANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGL  385 (450)
T ss_dssp             HHHHHHHHH-TTHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence            677777887 699999999998 57899999999999999975 567788888999999999999999999999999999


Q ss_pred             HHhhhc
Q 010064          413 ECLRVD  418 (519)
Q Consensus       413 ~~l~~~  418 (519)
                      .++...
T Consensus       386 ~~l~~~  391 (450)
T 2jdq_A          386 ENILRL  391 (450)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999854

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=5.6e-26  Score=219.91  Aligned_cols=237  Identities=24%  Similarity=0.333  Sum_probs=218.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .++.|++.|.+++.+.+..|++.|.+++..+++++..+.+.|+++.|+.+|++++++++..++++|.||+.+++.++..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            48999999999999999999999999998887899999999999999999999999999999999999999889999999


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc-cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS-ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS-~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ++.|+++.|+.+++++   +..++..++++|.+|+ ..++++..+.+.|+++.|++++.+    .++.++..|+++|.||
T Consensus        83 ~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~----~~~~~~~~a~~~L~~l  155 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANI  155 (252)
T ss_dssp             HHTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence            9999999999999988   8999999999999999 556778888899999999999998    6899999999999999


Q ss_pred             cCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064          292 SIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS  367 (519)
Q Consensus       292 s~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~  367 (519)
                      +...+ +...+++.|+++.|+.+|.+  ++++..|+++|.||+. .++.+..+.+ .|+++.|++++. ++++.+++.|+
T Consensus       156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~-~~~~~v~~~a~  233 (252)
T 4hxt_A          156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLT-STDSEVQKEAQ  233 (252)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGG-CSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHC-CCcHHHHHHHH
Confidence            98665 66788899999999999964  5699999999999998 6677778888 799999999999 67899999999


Q ss_pred             HHHHHHhcCCh
Q 010064          368 YVLMVMAHKSY  378 (519)
Q Consensus       368 ~~L~nL~~~~~  378 (519)
                      ++|.||+...+
T Consensus       234 ~~L~~l~~~~~  244 (252)
T 4hxt_A          234 RALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHTCB
T ss_pred             HHHHHHHcCCC
Confidence            99999998643

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=1e-25  Score=243.72  Aligned_cols=305  Identities=17%  Similarity=0.168  Sum_probs=268.6

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+..++.+|.+++.+ +.....+...|+   ++.|+++|.+++..++..|+++|.+|+..++.++..+...|++++|+
T Consensus       145 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~---i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~  221 (530)
T 1wa5_B          145 EMLQLEAAWALTNIASGTSAQTKVVVDADA---VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL  221 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHCCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHH
Confidence            45677888899999865 456667767787   99999999999999999999999999988788999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhC
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSS  259 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~  259 (519)
                      .+|.+.+..++..++++|.||+.+...........|++|.|+.++.++   +..++..++++|.+|+... +....+.+.
T Consensus       222 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~  298 (530)
T 1wa5_B          222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDV  298 (530)
T ss_dssp             HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             HHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence            999999999999999999999986535555666789999999999988   8999999999999999764 346667788


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Ccc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPE  335 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e  335 (519)
                      |+++.|+.+|..    .+..++..|+++|.||+...+ ....+++.|+++.|+.+|.+  ..++..|+++|+||+. .++
T Consensus       299 ~~v~~Lv~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~  374 (530)
T 1wa5_B          299 RIPKRLVELLSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE  374 (530)
T ss_dssp             TCHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CcHHHHHHHHCC----CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999987    689999999999999998765 66777889999999999964  4599999999999997 666


Q ss_pred             cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-Ch--hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SY--GDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~--~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      ..+.+++ .++++.|+.+|. ++++.++..|+|+|.||+.. ++  +..+.+.+.|++|.|+.++.++++.++..|.++|
T Consensus       375 ~~~~~~~-~~~l~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL  452 (530)
T 1wa5_B          375 QIQAVID-ANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL  452 (530)
T ss_dssp             HHHHHHH-TTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            7777887 799999999998 57899999999999999985 34  6788888999999999999999999999999999


Q ss_pred             HHhhhc
Q 010064          413 ECLRVD  418 (519)
Q Consensus       413 ~~l~~~  418 (519)
                      .++...
T Consensus       453 ~~l~~~  458 (530)
T 1wa5_B          453 ENILKM  458 (530)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999854

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.3e-26  Score=223.78  Aligned_cols=234  Identities=23%  Similarity=0.335  Sum_probs=214.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .++.+++.|++++.+.+..|++.|+++...+.+.+..+.+.|+++.|+.+|+++++.++..++++|.||+.+++.++..+
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            37889999999999999999999987555566888899999999999999999999999999999999999889999999


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh-hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK-PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k-~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ++.|++|.|+.+++++   ++.+++.++++|.+|+..++.+ ..+.+.|++|.|+.+|.+    .+..++..|+++|.||
T Consensus        93 ~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l  165 (252)
T 4db8_A           93 IDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNI  165 (252)
T ss_dssp             HHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence            9999999999999998   8999999999999999988887 788899999999999988    6999999999999999


Q ss_pred             cCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064          292 SIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS  367 (519)
Q Consensus       292 s~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~  367 (519)
                      +..++ +...+++.|+++.|+.+|.  ++++++.|+++|.||+. +++.+..+.+ .|+++.|++++. ++++.+++.|+
T Consensus       166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~-~~~~~v~~~A~  243 (252)
T 4db8_A          166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQS-HENEKIQKEAQ  243 (252)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTT-CSSSHHHHTHH
T ss_pred             HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhC-CCCHHHHHHHH
Confidence            98664 7778889999999999995  45699999999999997 6777788888 799999999999 67899999999


Q ss_pred             HHHHHHhc
Q 010064          368 YVLMVMAH  375 (519)
Q Consensus       368 ~~L~nL~~  375 (519)
                      ++|.||+.
T Consensus       244 ~~L~~l~~  251 (252)
T 4db8_A          244 EALEKLQS  251 (252)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHHHhc
Confidence            99999974

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=7.6e-26  Score=250.87  Aligned_cols=303  Identities=22%  Similarity=0.220  Sum_probs=267.0

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhc-chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKE-EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~-g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L  179 (519)
                      +..+..++.+|.+++.++.++..+... +.   ++.|++.|.++ +.+.+..|+..|++|+... +++..+.+.|+++.|
T Consensus        28 ~~vr~~A~~~L~~La~~~~~~~~i~~~~~~---i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~L  103 (644)
T 2z6h_A           28 QVVVNKAAVMVHQLSKKEASRHAIMRSPQM---VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPAL  103 (644)
T ss_dssp             HHHHHHHHHHHHHHHTSTTHHHHHTTCHHH---HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhHHHHHhccCh---HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHH
Confidence            567888889999999887776666433 45   99999999865 8899999999999999764 799999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhh
Q 010064          180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGS  258 (519)
Q Consensus       180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~  258 (519)
                      +.+|+++++.++..|+++|.||+..++.++..+++.|++|.|+++|+++   +..++..++.+|.+|+. +++++..+.+
T Consensus       104 v~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~La~~~~~~~~~i~~  180 (644)
T 2z6h_A          104 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILA  180 (644)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999999999999999997778888999999999999999998   78888888889999996 5677889999


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCccc
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEG  336 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~  336 (519)
                      .|+++.|+.++.+.   .....+..++.+|.||+.+++++..+++.|+++.|+.++.+  .+++..++++|.||+.....
T Consensus       181 ~g~v~~Lv~lL~~~---~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          181 SGGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             TTHHHHHHHHHTTC---CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred             cCChHHHHHHHHcC---ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence            99999999999985   56788999999999999998999999999999999999964  56999999999999974322


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC-C-HHHHHHHHHHHHH
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG-S-TLAQKRASRILEC  414 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g-s-~~~~~~A~~~L~~  414 (519)
                      .  ... .++++.|+.+|. +.++.+++.|+++|.+|+.+++++++.+.+.|+++.|++++.+. + +.++..|.++|.+
T Consensus       258 ~--~~~-~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n  333 (644)
T 2z6h_A          258 Q--EGM-EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH  333 (644)
T ss_dssp             C--CSC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             h--hhh-hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence            1  112 378999999999 67899999999999999998888999999999999999999974 3 7999999999999


Q ss_pred             hhhc
Q 010064          415 LRVD  418 (519)
Q Consensus       415 l~~~  418 (519)
                      |...
T Consensus       334 L~~~  337 (644)
T 2z6h_A          334 LTSR  337 (644)
T ss_dssp             HTSS
T ss_pred             HhcC
Confidence            9853

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=247.41  Aligned_cols=307  Identities=18%  Similarity=0.146  Sum_probs=268.0

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ...+..++.+|.+++.++.++..+.+.|+   ++.|+++|.+++...+..|+++|.+|+..+...+..+.+.|+++.|+.
T Consensus        71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~  147 (644)
T 2z6h_A           71 VETARCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  147 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHTTTH---HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcChhhHHHHHHcCC---HHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence            45677788889999988888888888777   999999999999999999999999999887788888889999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA  261 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga  261 (519)
                      +|+++++.++..++.+|.||+.++++++..+++.|+++.|+.++++..  ...+++.++.+|++|+..++++..+.+.|+
T Consensus       148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~  225 (644)
T 2z6h_A          148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  225 (644)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTH
T ss_pred             HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence            999999999999999999999888999999999999999999999873  467888999999999999999999999999


Q ss_pred             hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC-CcccHH
Q 010064          262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS-TPEGRK  338 (519)
Q Consensus       262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~-~~e~r~  338 (519)
                      ++.|+.++..    .+..++..++++|.||+......  ....++++.|+.+|.  ++++++.|+++|+||+. .++.+.
T Consensus       226 l~~L~~ll~~----~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~  299 (644)
T 2z6h_A          226 MQALGLHLTD----PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM  299 (644)
T ss_dssp             HHHHHTTTTC----SCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999988    68999999999999999764321  122378999999995  45699999999999998 457788


Q ss_pred             HHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCCh---hhHHHHHHcCcHHHHHHHhhcCC-HHHHHHHHHHHH
Q 010064          339 AISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSY---GDRQAMIEAGIASALLELTLLGS-TLAQKRASRILE  413 (519)
Q Consensus       339 ~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~---~~~~~i~~~G~i~~Ll~Ll~~gs-~~~~~~A~~~L~  413 (519)
                      .+.+ .|+++.|+++|.+.+ .+.+++.|+++|.||+....   ..+..+.+.|++|.|++++.+++ +.+++.|.++|.
T Consensus       300 ~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  378 (644)
T 2z6h_A          300 MVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR  378 (644)
T ss_dssp             HHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHH
Confidence            8888 799999999998433 37999999999999997533   23556889999999999999875 799999999999


Q ss_pred             HhhhcCC
Q 010064          414 CLRVDKG  420 (519)
Q Consensus       414 ~l~~~~~  420 (519)
                      +|...+.
T Consensus       379 nLa~~~~  385 (644)
T 2z6h_A          379 NLALCPA  385 (644)
T ss_dssp             HHTTSGG
T ss_pred             HHccCHH
Confidence            9985443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=9.2e-26  Score=219.56  Aligned_cols=235  Identities=23%  Similarity=0.302  Sum_probs=215.8

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCC
Q 010064          173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDS  251 (519)
Q Consensus       173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~  251 (519)
                      ....+.++.+|.+++++++..|+++|.++...+++++..+++.|++|.|+.+|+++   ++.++..++++|.+++. +++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHH
Confidence            34689999999999999999999999887765688899999999999999999998   89999999999999997 567


Q ss_pred             ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHcC--CHHHHHHHHHHHH
Q 010064          252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNI-SFILETDLIRYLLEMLG--DMELSERILSILS  328 (519)
Q Consensus       252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~-~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~  328 (519)
                      ++..+.+.|+++.|+.+|.+    .+..++..|+++|.||+.+++++ ..+++.|+++.|+.+|.  +++++..|+++|+
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  163 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            78889999999999999998    68999999999999999998877 88899999999999995  4569999999999


Q ss_pred             HhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064          329 NLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKR  407 (519)
Q Consensus       329 nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~  407 (519)
                      ||+. .++.+..+.+ .|+++.|+++|. ++++.+++.|+++|.||+..+++.++.+.+.|+++.|+.++.++++.++..
T Consensus       164 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~  241 (252)
T 4db8_A          164 NIASGGNEQIQAVID-AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE  241 (252)
T ss_dssp             HHTTSCHHHHHHHHH-TTCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred             HHHcCChHHHHHHHH-CCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence            9998 5566677777 799999999999 678999999999999999888888999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 010064          408 ASRILECLR  416 (519)
Q Consensus       408 A~~~L~~l~  416 (519)
                      |.++|.+|.
T Consensus       242 A~~~L~~l~  250 (252)
T 4db8_A          242 AQEALEKLQ  250 (252)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHh
Confidence            999999886

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=1.3e-24  Score=246.02  Aligned_cols=303  Identities=17%  Similarity=0.145  Sum_probs=253.8

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ...+..++.+|.+++.++.++..+.+.|+   ++.|+++|.+++...+..|+++|.+|+..+...+..+.+.|+++.|+.
T Consensus       207 ~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~---I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~  283 (780)
T 2z6g_A          207 VETARCTSGTLHNLSHHREGLLAIFKSGG---IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  283 (780)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHcCC---HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH
Confidence            34566777788888888777888877777   999999999999999999999999999887788888889999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA  261 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga  261 (519)
                      +|++++..++..++.+|.+|+..+++++..+++.|+++.|+.++++..  .....+.++.+|++|+..+.++..+.+.|+
T Consensus       284 lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~  361 (780)
T 2z6g_A          284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  361 (780)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSTTHHHHHHHTTH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHHHHHHHHhch
Confidence            999999999999999999999988999999999999999999999872  456677888999999988888888888887


Q ss_pred             hHHHHHHhhcC-----------------------------------CCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcC
Q 010064          262 VPFLVKTLKNS-----------------------------------DKKVSPQAKQDALRALYNLSIFP-SNISFILETD  305 (519)
Q Consensus       262 i~~LV~lL~~~-----------------------------------~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g  305 (519)
                      ++.|+.++...                                   ....+..++..|+++|.||+..+ +++..+++.|
T Consensus       362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g  441 (780)
T 2z6g_A          362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  441 (780)
T ss_dssp             HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence            77777665431                                   12267888999999999999876 4788888999


Q ss_pred             cHHHHHHHcCC----HHHHHHHHHHHHHhcCC-cc---cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          306 LIRYLLEMLGD----MELSERILSILSNLVST-PE---GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       306 ~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~-~e---~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      +++.|+.+|.+    .++++.|+++|+||+.. ++   .+..+.. .++++.|+++|.+...+.+++.|+|+|.||+.+ 
T Consensus       442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-  519 (780)
T 2z6g_A          442 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-  519 (780)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-
T ss_pred             CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-
Confidence            99999999943    26999999999999873 33   2556777 789999999999555569999999999999986 


Q ss_pred             hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064          378 YGDRQAMIEAGIASALLELTLLGSTLAQKRASRI  411 (519)
Q Consensus       378 ~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~  411 (519)
                      +.++..+.+.|++|.|++++.++++.+++.|.|+
T Consensus       520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~a  553 (780)
T 2z6g_A          520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG  553 (780)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhc
Confidence            5667889999999999999987665555444333

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.93  E-value=2e-24  Score=244.57  Aligned_cols=306  Identities=18%  Similarity=0.178  Sum_probs=264.6

Q ss_pred             HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc
Q 010064          105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD  184 (519)
Q Consensus       105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~  184 (519)
                      +..++.+|.+++....++..+.+.|+   ++.|+.+|.+++...+..|+++|.+|+......   ....++++.|+.+|+
T Consensus       336 ~~~a~~aL~~Ls~~~~~~~~i~~~g~---l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~  409 (780)
T 2z6g_A          336 LWTTSRVLKVLSVCSSNKPAIVEAGG---MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG  409 (780)
T ss_dssp             HHHHHHHHHHHHTSTTHHHHHHHTTH---HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcChHHHHHHHHhch---HHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHc
Confidence            34456678888877788888888887   999999999999999999999999999765321   112468999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC----hhhhhhCC
Q 010064          185 FQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN----KPIIGSSG  260 (519)
Q Consensus       185 s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~----k~~I~~~g  260 (519)
                      +.++.++..|+++|.||+.+++.++..+++.|+++.|+++|....+ ...++..++++|.+|+.....    +..+...|
T Consensus       410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~  488 (780)
T 2z6g_A          410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-REDITEPAICALRHLTSRHQDAEMAQNAVRLHY  488 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence            9999999999999999999888999999999999999999976311 348999999999999875432    45777899


Q ss_pred             ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC------------------------
Q 010064          261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD------------------------  316 (519)
Q Consensus       261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~------------------------  316 (519)
                      +++.|+.+|...   ....++..|+++|.||+.++.++..+.+.|+++.|+.+|.+                        
T Consensus       489 ~l~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~  565 (780)
T 2z6g_A          489 GLPVVVKLLHPP---SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM  565 (780)
T ss_dssp             CHHHHHHTTSTT---CCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred             CHHHHHHHhcCC---ChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence            999999999884   45699999999999999988888889999999999999843                        


Q ss_pred             HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064          317 MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL  396 (519)
Q Consensus       317 ~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L  396 (519)
                      .++++.++.+|++|+.+++++..+.. .|+++.|+++|. +.++.++..|+.+|++|+.. ++.+..+.+.|+++.|+.+
T Consensus       566 ~~v~~~a~~aL~~La~~~~~~~~l~~-~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~L  642 (780)
T 2z6g_A          566 EEIVEACTGALHILARDIHNRIVIRG-LNTIPLFVQLLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTEL  642 (780)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHH-TCCHHHHHHGGG-CSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcChhhHHHHHH-CCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHH
Confidence            23677899999999999889888888 799999999999 67899999999999999865 6788999999999999999


Q ss_pred             hhcCCHHHHHHHHHHHHHhhhcCCCcc
Q 010064          397 TLLGSTLAQKRASRILECLRVDKGKQV  423 (519)
Q Consensus       397 l~~gs~~~~~~A~~~L~~l~~~~~~~~  423 (519)
                      +.++++.++..|.++|.++..+....+
T Consensus       643 l~~~~~~Vr~~A~~aL~~l~~~~~~~~  669 (780)
T 2z6g_A          643 LHSRNEGVATYAAAVLFRMSEDKPQDY  669 (780)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence            999999999999999999997765443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=9e-25  Score=211.39  Aligned_cols=196  Identities=21%  Similarity=0.203  Sum_probs=174.9

Q ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESE--EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~--~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ++.+|++|++++.  +.|..|++.|++|+..++++|..+.+.|+||+||++|+++++++|+.|+++|.||+.++++||..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            8999999999987  88999999999999988899999999999999999999999999999999999999988999999


Q ss_pred             HHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh---cCC---------CCCCH
Q 010064          212 IVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK---NSD---------KKVSP  278 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~---~~~---------~~~~~  278 (519)
                      |+++|+||+|+++|+ ++   +..+++.++++||+||..+++|..|.+. ++|.|+.++.   ++.         ...+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHcCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            999999999999998 45   7899999999999999999999999874 6999998663   110         12477


Q ss_pred             HHHHHHHHHHHHhcCCC-ccHHHHHhc-CcHHHHHHHcC--------CHHHHHHHHHHHHHhcCC
Q 010064          279 QAKQDALRALYNLSIFP-SNISFILET-DLIRYLLEMLG--------DMELSERILSILSNLVST  333 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~-~n~~~l~~~-g~v~~Lv~lL~--------~~~v~~~Al~~L~nLs~~  333 (519)
                      .++.+|+.+|+||+... +++..+.+. |+|+.|+.++.        +...+|.|+.+|.||+..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999865 689999876 77899999993        235899999999999863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.9e-24  Score=235.68  Aligned_cols=339  Identities=13%  Similarity=0.115  Sum_probs=263.6

Q ss_pred             hHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHh
Q 010064          104 SKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGM  182 (519)
Q Consensus       104 ~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~l  182 (519)
                      .+..++..|+.+.......    +....+..+.+++.|..++.+.+..|+..|..|+. +++.|..++. .|+++.|+.+
T Consensus       310 ir~lAavvL~KL~~~~~~~----~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~l  384 (778)
T 3opb_A          310 VQIYSALVLVKTWSFTKLT----CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTM  384 (778)
T ss_dssp             GHHHHHHHHHHHTGGGTCT----TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCC----cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHH
Confidence            3555666666664322111    11222347788888888887889999999999995 4689999988 5679999999


Q ss_pred             hcC-CCHHHHHHHHHHHHHhcCCChh--------------------------------------hHHHHHhcCcHHHHHH
Q 010064          183 LDF-QLADSQISSLYALLNLGIGNDL--------------------------------------NKAAIVKAGAVHKMLK  223 (519)
Q Consensus       183 L~s-~~~~~~~~a~~aL~NLa~~~~~--------------------------------------nk~~iv~aG~v~~Lv~  223 (519)
                      ++. .+..+...++.+|.||+...+.                                      ++..++++|++|.|+.
T Consensus       385 lk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~  464 (778)
T 3opb_A          385 IKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR  464 (778)
T ss_dssp             HTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred             HhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence            995 7778899999999999963221                                      5678889999999999


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCH---HHHHHHHHHHHHhcCCCccHHH
Q 010064          224 LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSP---QAKQDALRALYNLSIFPSNISF  300 (519)
Q Consensus       224 lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~---~~~~~A~~aL~nLs~~~~n~~~  300 (519)
                      +++++   ++.+++.++++|.+|+.++++|..++++|+++.|+.+|.+.    +.   .++..|+++|.+|+...+....
T Consensus       465 Ll~S~---s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~----~~~~~~~k~~AA~ALArLlis~np~~~  537 (778)
T 3opb_A          465 EMHNL---SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK----QDIGEPIRILGCRALTRMLIFTNPGLI  537 (778)
T ss_dssp             HGGGS---CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHcCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC----CCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence            99998   89999999999999999999999999999999999999884    33   3899999999999976653332


Q ss_pred             HHh---cCcHHHHHHHcCC-HH--------------H-HHHHHHHHHHhcCCc-----ccHHHHhhcCCcchhhhhhccC
Q 010064          301 ILE---TDLIRYLLEMLGD-ME--------------L-SERILSILSNLVSTP-----EGRKAISRVPDAFPILVDVLNW  356 (519)
Q Consensus       301 l~~---~g~v~~Lv~lL~~-~~--------------v-~~~Al~~L~nLs~~~-----e~r~~i~~~~g~i~~Lv~lL~~  356 (519)
                      +-.   .|+|++|+.+|.. ++              + ..+|+.+|+||+..+     +.|+.|+...|+|+.|+++|. 
T Consensus       538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~-  616 (778)
T 3opb_A          538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML-  616 (778)
T ss_dssp             SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGG-
T ss_pred             cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHh-
Confidence            211   3899999999972 22              1 669999999999975     457878883389999999999 


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhH-HHHHH------cCcHHHHHHHhhcCCHHHHHHHHHHHHHhh-hcCCCcccccCC
Q 010064          357 TDSPGCQEKASYVLMVMAHKSYGDR-QAMIE------AGIASALLELTLLGSTLAQKRASRILECLR-VDKGKQVSGTYG  428 (519)
Q Consensus       357 s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~-~~~~~~~~~~~g  428 (519)
                      ++++.+|++|+++++||+.++ +.+ +.+..      .+.++.|+.|+..++...|..|.++|+++. .++.....    
T Consensus       617 s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~----  691 (778)
T 3opb_A          617 DENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE----  691 (778)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH----
T ss_pred             CCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH----
Confidence            678999999999999999864 433 34432      224889999999999999999999999996 44322111    


Q ss_pred             CcccccccccCccccCCCCCCCCCCCcc---hhhhh--HhhhhhHHHHHHHHHHHH
Q 010064          429 GNLVAAAAVSAPICGSSSSTSTNPNGVA---KECLE--EEEDMMSEEKKAVKQLVQ  479 (519)
Q Consensus       429 g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~v~  479 (519)
                                     +..    +++|.+   ..|.+  ++++++|||.+++.||+.
T Consensus       692 ---------------ll~----~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          692 ---------------LLT----KKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             ---------------HTT----CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             ---------------HHH----ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                           111    222333   26777  899999999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=209.77  Aligned_cols=195  Identities=19%  Similarity=0.237  Sum_probs=175.5

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCC
Q 010064          175 AIPPLAGMLDFQLA--DSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDS  251 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~--~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~  251 (519)
                      .+|+||++|+++++  +++..|+++|.||+.+++++|..|++.|+||.|+++|+++   +..+++.|+++|.+|+. +++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~---~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ---NEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCHH
Confidence            58999999999887  8999999999999988899999999999999999999998   89999999999999998 467


Q ss_pred             ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC----------------
Q 010064          252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG----------------  315 (519)
Q Consensus       252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~----------------  315 (519)
                      +|..|.+.|+||.||++|.+.   .+..++..|+.+|+||+..++++..+++ +++++|+.++.                
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~---~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~  161 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQT---RDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANG  161 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred             HHHHHHHcCCHHHHHHHHccC---CCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccc
Confidence            899999999999999999852   6899999999999999999999988887 47999998662                


Q ss_pred             --CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCC-----CCHHHHHHHHHHHHHHhcC
Q 010064          316 --DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWT-----DSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       316 --~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s-----~~~~~qe~A~~~L~nL~~~  376 (519)
                        +.++.++|..+|.||++ ++++|+.|.+..|+|+.|+.+++..     .+.+.+|.|+.+|.||+..
T Consensus       162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence              34699999999999998 6799999998778899999999731     2567899999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=2.9e-22  Score=220.89  Aligned_cols=308  Identities=15%  Similarity=0.121  Sum_probs=250.3

Q ss_pred             HHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh------------------
Q 010064          105 KSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSE------------------  165 (519)
Q Consensus       105 ~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~------------------  165 (519)
                      +..++..|.-++.+...|+.+++..  ..++.|++.++. ++......++..|.||+...+.                  
T Consensus       351 ~~~AvEgLaYLSl~~~VKe~L~~d~--~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~  428 (778)
T 3opb_A          351 VEMSVEALAYLSLKASVKIMIRSNE--SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXX  428 (778)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHCH--HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhCH--HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcccc
Confidence            5666677777888888888886542  349999999985 6777888999999999874321                  


Q ss_pred             --------------------hHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh
Q 010064          166 --------------------TRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI  225 (519)
Q Consensus       166 --------------------~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL  225 (519)
                                          ++..+.+.|+||+|+.+++++++.+++.++++|.||+. +.++|..+++.|+++.|+.++
T Consensus       429 ~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL  507 (778)
T 3opb_A          429 XPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYL  507 (778)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHT
T ss_pred             CcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHH
Confidence                                46677889999999999999999999999999999998 599999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh---CCChHHHHHHhhcCCCCC-----------CHHHHHHHHHHHHHh
Q 010064          226 ESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS---SGAVPFLVKTLKNSDKKV-----------SPQAKQDALRALYNL  291 (519)
Q Consensus       226 ~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~---~gai~~LV~lL~~~~~~~-----------~~~~~~~A~~aL~nL  291 (519)
                      .+........++.|+.+|.++....+....+..   .|+||+|+.+|... +..           +.-.+..|+.||.||
T Consensus       508 ~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~-~~~~~~~l~~~~~~~~l~~feAL~ALTNL  586 (778)
T 3opb_A          508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS-TPVDDNPLHNDEQIKLTDNYEALLALTNL  586 (778)
T ss_dssp             TCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCS-SSCSSCC---CCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCC-CCcccccccccccccHHHHHHHHHHHHHH
Confidence            987210012789999999999876654444421   49999999999831 111           113377999999999


Q ss_pred             cCCCc-----cHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccH-HHHhhcC-----CcchhhhhhccCC
Q 010064          292 SIFPS-----NISFILET-DLIRYLLEMLGD--MELSERILSILSNLVSTPEGR-KAISRVP-----DAFPILVDVLNWT  357 (519)
Q Consensus       292 s~~~~-----n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r-~~i~~~~-----g~i~~Lv~lL~~s  357 (519)
                      +..++     .+..++.. |+++.|..+|.+  ..++..|+++++||+.+++++ +.+.+..     +.++.|+.++. +
T Consensus       587 As~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s  665 (778)
T 3opb_A          587 ASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ-L  665 (778)
T ss_dssp             HHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG-C
T ss_pred             hcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc-C
Confidence            99874     36778885 999999999953  459999999999999988876 3554311     13788999998 7


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CcHHHHHHHhhc--CCHHHHHHHHHHHHHhhh
Q 010064          358 DSPGCQEKASYVLMVMAHKSYGDRQAMIEA-GIASALLELTLL--GSTLAQKRASRILECLRV  417 (519)
Q Consensus       358 ~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~-G~i~~Ll~Ll~~--gs~~~~~~A~~~L~~l~~  417 (519)
                      ++..+|++|+|+|.|++...+..++.+++. ++++.|++++.+  +++.++.++..++.+|.+
T Consensus       666 ~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          666 SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999987667777888776 899999999999  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=4.9e-22  Score=187.96  Aligned_cols=195  Identities=22%  Similarity=0.302  Sum_probs=176.8

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CC
Q 010064          172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LD  250 (519)
Q Consensus       172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~  250 (519)
                      ..|+.++|+.+|++++++++..|+++|.||+.+++.++..+++.|++|.|+.+|+++   ++.+++.++++|.+++. ++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCc
Confidence            468899999999999999999999999999988899999999999999999999998   89999999999999995 45


Q ss_pred             CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHH
Q 010064          251 SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSIL  327 (519)
Q Consensus       251 ~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L  327 (519)
                      +++..+.+.|+++.|+.+|.+    .+..++..|+++|.||+.+.+ ++..+++.|+++.|+.+|.  +++++..|+++|
T Consensus        87 ~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL  162 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHcC----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            678888899999999999998    689999999999999997655 6778889999999999996  456999999999


Q ss_pred             HHhcCC-cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhc
Q 010064          328 SNLVST-PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAH  375 (519)
Q Consensus       328 ~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~  375 (519)
                      .||+.. ++.+..+.+ .|+++.|++++. ++++.+++.|+++|.+|+.
T Consensus       163 ~~l~~~~~~~~~~~~~-~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          163 SNIASGGNEQKQAVKE-AGALEKLEQLQS-HENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHTSCHHHHHHHHH-TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHcCCcHHHHHHHH-CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence            999995 778888888 799999999999 6899999999999999985

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=5e-22  Score=187.90  Aligned_cols=192  Identities=23%  Similarity=0.313  Sum_probs=177.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      .+.|+.+|++++.+.+..|++.|.+|+..+++.+..+.+.|+++.|+.+|+++++.++..|+++|.||+.+++.++..++
T Consensus        14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (210)
T 4db6_A           14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            78999999999999999999999999988889999999999999999999999999999999999999988899999999


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      +.|++|.|+.+|+++   +..++..++++|.+++... +.+..+.+.|+++.|+.++.+    .+..++..|+++|.||+
T Consensus        94 ~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           94 DAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIA  166 (210)
T ss_dssp             HTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHcCC---cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHH
Confidence            999999999999998   8999999999999999654 445677889999999999998    68999999999999999


Q ss_pred             CC-CccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064          293 IF-PSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVS  332 (519)
Q Consensus       293 ~~-~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~  332 (519)
                      .. ++++..+.+.|+++.|+.++.  ++++++.|+++|.+|+.
T Consensus       167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88 458888889999999999995  45699999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.85  E-value=4.9e-20  Score=185.02  Aligned_cols=181  Identities=15%  Similarity=0.199  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHh
Q 010064          146 EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKL  224 (519)
Q Consensus       146 ~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~l  224 (519)
                      .+.+..|+..|..++.. .++...+...|++|+|+. +|+++++.++..|+++|.|++.+++.++..+++.|++|+|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            35788999999999954 578888899999999999 9999999999999999999999989999999999999999999


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 010064          225 IESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFIL  302 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~  302 (519)
                      |+++.  +..+++.|+++|.+++.+. +....+.+.|++|.|+.+|.+    .+..++..|+|+|.||+.+ ++.+..++
T Consensus       133 L~~~~--~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~----~d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          133 LDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----QVQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HccCC--CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            98531  6899999999999998654 446677889999999999998    7999999999999999876 45889999


Q ss_pred             hcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCC
Q 010064          303 ETDLIRYLLEMLGD--MELSERILSILSNLVST  333 (519)
Q Consensus       303 ~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~  333 (519)
                      +.|++++|+.+|.+  .++++.|+.+|.||+..
T Consensus       207 ~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999964  45999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.81  E-value=5.2e-19  Score=177.53  Aligned_cols=184  Identities=16%  Similarity=0.145  Sum_probs=167.1

Q ss_pred             hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVK-DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~-~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ..+..++..|..+.++..+...+.+.|+   ++.|+. +|.+++.++|..|+++|.+++.+++..+..+.+.|++|+|+.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~---l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCC---HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            3466777788888888778888878888   999999 999999999999999999999999899999999999999999


Q ss_pred             hhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhhC
Q 010064          182 MLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSS  259 (519)
Q Consensus       182 lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~~  259 (519)
                      +|++ ++..++..|+|+|.||+.+++.....++++|++|.|+.+|+++   +..++..|+++|.+|+.. ++.+..+++.
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~~~~vv~~  208 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLCSM  208 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence            9986 5899999999999999998888899999999999999999998   899999999999998764 5568888999


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~  296 (519)
                      |+++.|+.+|..    .+.+++..|+.+|.||+....
T Consensus       209 g~i~~Lv~LL~~----~d~~v~~~al~aL~~l~~~~~  241 (296)
T 1xqr_A          209 GMVQQLVALVRT----EHSPFHEHVLGALCSLVTDFP  241 (296)
T ss_dssp             THHHHHHHHHTS----CCSTHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHcC----CChhHHHHHHHHHHHHHhCCh
Confidence            999999999998    688999999999999998744

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.50  E-value=4.2e-12  Score=136.98  Aligned_cols=277  Identities=16%  Similarity=0.146  Sum_probs=217.3

Q ss_pred             hhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCh
Q 010064          130 ALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGND  206 (519)
Q Consensus       130 ~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~  206 (519)
                      +-+.++.|+..|.+.. .+.|+.|+..|+.++++   ++..+ ..++++.|+..|+.  .|.++-..++.+|.|+...++
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            3456899999997664 67899999999999964   55544 35789999999976  688899999999999876543


Q ss_pred             h-----------------hHHHH-HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhhhh-CCChHHH
Q 010064          207 L-----------------NKAAI-VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGS-SGAVPFL  265 (519)
Q Consensus       207 ~-----------------nk~~i-v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~-~gai~~L  265 (519)
                      .                 +...+ .+.+.|+.|+.+|++.   +-.++..++..|..|..+.+  ++..|.. .++|+.|
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~---df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L  171 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF---DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL  171 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc---cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence            2                 22233 3468899999999998   89999999999998876543  4677774 6999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH------HHHHHHHHHHHHhcC-CcccH
Q 010064          266 VKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM------ELSERILSILSNLVS-TPEGR  337 (519)
Q Consensus       266 V~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~------~v~~~Al~~L~nLs~-~~e~r  337 (519)
                      |.+|..    ....++..++..|.+|+.++.++++++.. |+++.|+.++..+      .+.+-|+.+|.||.. ++.++
T Consensus       172 v~lL~d----~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ  247 (651)
T 3grl_A          172 MDLLAD----SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQ  247 (651)
T ss_dssp             HGGGGC----SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhC----chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHH
Confidence            999998    68999999999999999999988888876 9999999999432      278999999999999 55577


Q ss_pred             HHHhhcCCcchhhhhhccCCCC-----HHHHHH---HHHHHHHHhcC------ChhhHHHHHHcCcHHHHHHHhhcC--C
Q 010064          338 KAISRVPDAFPILVDVLNWTDS-----PGCQEK---ASYVLMVMAHK------SYGDRQAMIEAGIASALLELTLLG--S  401 (519)
Q Consensus       338 ~~i~~~~g~i~~Lv~lL~~s~~-----~~~qe~---A~~~L~nL~~~------~~~~~~~i~~~G~i~~Ll~Ll~~g--s  401 (519)
                      ..+.+ .++++.|..++.....     +....+   +..++.-|+..      +..++..+.+.|+++.|++++...  .
T Consensus       248 ~~FrE-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p  326 (651)
T 3grl_A          248 NFFKE-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVP  326 (651)
T ss_dssp             HHHHH-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCC
T ss_pred             HHHHH-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCC
Confidence            77777 7999999999872211     112222   45556666654      234677899999999999999865  5


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 010064          402 TLAQKRASRILECLRVD  418 (519)
Q Consensus       402 ~~~~~~A~~~L~~l~~~  418 (519)
                      ..++..|..+++-+...
T Consensus       327 ~~i~~~Al~tla~~irg  343 (651)
T 3grl_A          327 ADILTETINTVSEVIRG  343 (651)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            67888888888887743

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.49  E-value=5.7e-12  Score=136.00  Aligned_cols=306  Identities=13%  Similarity=0.092  Sum_probs=230.2

Q ss_pred             hhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChh---------------
Q 010064          103 VSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSE---------------  165 (519)
Q Consensus       103 ~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~---------------  165 (519)
                      ..|..++..|-.++.+  ++..+ ..++   ++.|+..|+.+  |.+....++..|.++...+..               
T Consensus        37 eDRR~Av~~Lk~~sk~--y~~~V-g~~~---l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~  110 (651)
T 3grl_A           37 DDRRNAVRALKSLSKK--YRLEV-GIQA---MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLG  110 (651)
T ss_dssp             HHHHHHHHHHHHTTTT--TTTHH-HHHT---HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHH
T ss_pred             hHHHHHHHHHHHHHHH--hHHHh-hhhh---HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHH
Confidence            3455666666666532  33333 2233   89999999764  667777788888876544322               


Q ss_pred             --hHHHH-HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-hHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHH
Q 010064          166 --TRVTL-AMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-NKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIV  240 (519)
Q Consensus       166 --~r~~l-~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~  240 (519)
                        +.+.+ .+.+.|+.|+.+|++.+-.++..++..|..|+...+. +++.|+.+ ++++.|+.+|.+.   ...++..++
T Consensus       111 ~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~---rE~iRneal  187 (651)
T 3grl_A          111 SQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS---REVIRNDGV  187 (651)
T ss_dssp             HHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS---SHHHHHHHH
T ss_pred             HHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc---hHHHHHHHH
Confidence              22333 3478899999999999999999999999999987766 78889966 9999999999998   789999999


Q ss_pred             HHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH-
Q 010064          241 ANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM-  317 (519)
Q Consensus       241 ~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~-  317 (519)
                      ..|.+|+.....-..++. .|+++.|+.++...-......+..+++.+|.||..++. |+..+.+.|+++.|..+|..+ 
T Consensus       188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~  267 (651)
T 3grl_A          188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD  267 (651)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred             HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence            999999988766555554 89999999999873111234688999999999999875 899999999999999998521 


Q ss_pred             -------HHHH---HHHHHHHHhcCC-------cccHHHHhhcCCcchhhhhhccCCC-CHHHHHHHHHHHHHHhcCChh
Q 010064          318 -------ELSE---RILSILSNLVST-------PEGRKAISRVPDAFPILVDVLNWTD-SPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       318 -------~v~~---~Al~~L~nLs~~-------~e~r~~i~~~~g~i~~Lv~lL~~s~-~~~~qe~A~~~L~nL~~~~~~  379 (519)
                             ....   .++.++.-|+..       ..+++++.+ .|++..|++++..++ ...++..|..++..+..+++.
T Consensus       268 ~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~  346 (651)
T 3grl_A          268 ENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV  346 (651)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence                   1122   366777777662       235677888 799999999987432 467889999999999999999


Q ss_pred             hHHHHHHcC---------cHHHHHHHhhc-CCHHHHHHHHHHHHHhhhc
Q 010064          380 DRQAMIEAG---------IASALLELTLL-GSTLAQKRASRILECLRVD  418 (519)
Q Consensus       380 ~~~~i~~~G---------~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~  418 (519)
                      +++.+.+..         ++..|+.++.+ .....|-.|...++.+..+
T Consensus       347 ~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~  395 (651)
T 3grl_A          347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK  395 (651)
T ss_dssp             HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence            888887643         33334444433 4578888888888888844

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.28  E-value=1e-10  Score=115.17  Aligned_cols=223  Identities=11%  Similarity=0.013  Sum_probs=171.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.|++.|.+++..++..|+..|..+..           .++++.|+.+|+++++.++..++++|.++........    
T Consensus        25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~----   89 (280)
T 1oyz_A           25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED----   89 (280)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch----
Confidence            8899999999999999999999998862           1357899999999999999999999999985322111    


Q ss_pred             hcCcHHHHHH-hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          214 KAGAVHKMLK-LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       214 ~aG~v~~Lv~-lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                        .+++.|.. ++.++   +..++..++.+|..+.....    .....+++.|+.++.+    .++.++..|+++|.++.
T Consensus        90 --~l~~~L~~~~~~d~---~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d----~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           90 --NVFNILNNMALNDK---SACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFD----KSTNVRRATAFAISVIN  156 (280)
T ss_dssp             --HHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC-
T ss_pred             --HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhC----CCHHHHHHHHHHHHhcC
Confidence              13445543 45666   78999999999988863221    1123468899999887    68999999999999875


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                      .          ..+++.|+.+|.++  .++..|+++|.++....         ..+++.|+.++. ++++.++..|+++|
T Consensus       157 ~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~-d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          157 D----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ-DKNEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTT-CSCHHHHHHHHHHH
T ss_pred             C----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence            3          25889999999654  58999999999885321         246778888998 67899999999999


Q ss_pred             HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      .++..           ..++|.|+.++.+++  ++..|..+|..+..
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD  250 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred             HHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence            98862           247899999998754  78888888887753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=5.5e-10  Score=105.09  Aligned_cols=186  Identities=20%  Similarity=0.162  Sum_probs=155.3

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064          173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                      .+.++.|+.+|+++++.++..++.+|..+..           ..+++.|+.++.++   +..++..++.+|..+.     
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~-----   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---DAWVRRAAADALGQIG-----   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---CHHHHHHHHHHHHHHC-----
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC---CHHHHHHHHHHHHhhC-----
Confidence            4578999999999999999999999998764           25899999999988   8999999999988764     


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHh
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNL  330 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nL  330 (519)
                           ...+++.|+.+|.+    .++.++..|+++|.++..          ..+++.|+.+|.++  .++..|+.+|+++
T Consensus        79 -----~~~~~~~L~~~l~~----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           79 -----DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI  139 (211)
T ss_dssp             -----CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence                 24678999999987    689999999999998853          35788999999654  5999999999988


Q ss_pred             cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064          331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR  410 (519)
Q Consensus       331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~  410 (519)
                      ..           ...++.|..++. +.++.++..|+.+|..+..           ..+++.|..++.++++.++..|..
T Consensus       140 ~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~  196 (211)
T 3ltm_A          140 GD-----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVN  196 (211)
T ss_dssp             CC-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CC-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHH
Confidence            42           347788999998 6789999999999999853           237888999999999999999999


Q ss_pred             HHHHhhhcC
Q 010064          411 ILECLRVDK  419 (519)
Q Consensus       411 ~L~~l~~~~  419 (519)
                      +|..+....
T Consensus       197 aL~~~~~~~  205 (211)
T 3ltm_A          197 YLETHKSFN  205 (211)
T ss_dssp             HHHC-----
T ss_pred             HHHhcCCCC
Confidence            999888543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.20  E-value=1.8e-09  Score=100.68  Aligned_cols=182  Identities=20%  Similarity=0.173  Sum_probs=154.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK  253 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k  253 (519)
                      +..+.++++|+++++.++..|+.+|..+..           ...++.|++++.++   +..++..++.+|..+.      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---~~~vr~~a~~~L~~~~------   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---DAWVRRAAADALGQIG------   73 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC---CHHHHHHHHHHHHhhC------
Confidence            457899999999999999999999998764           25789999999888   8999999998887764      


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhc
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLV  331 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs  331 (519)
                          ...+++.|+.+|.+    .++.++..|+++|.++..          ..+++.|+.+|.++  .++..|+.+|+++.
T Consensus        74 ----~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           74 ----DERAVEPLIKALKD----EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             ----CGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             ----CHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                23578999999987    699999999999998753          34788899999654  48999999999875


Q ss_pred             CCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064          332 STPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRI  411 (519)
Q Consensus       332 ~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~  411 (519)
                      .           ...++.|..++. +.++.++..|+++|..+..  +         .+++.|..++.++++.++..|..+
T Consensus       136 ~-----------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~a  192 (201)
T 3ltj_A          136 D-----------ERAVEPLIKALK-DEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNY  192 (201)
T ss_dssp             C-----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHH
Confidence            2           357888999998 6789999999999999842  2         278899999999999999999999


Q ss_pred             HHHhh
Q 010064          412 LECLR  416 (519)
Q Consensus       412 L~~l~  416 (519)
                      |..+.
T Consensus       193 L~~l~  197 (201)
T 3ltj_A          193 LETHK  197 (201)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            98875

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.20  E-value=6e-10  Score=104.87  Aligned_cols=186  Identities=20%  Similarity=0.156  Sum_probs=153.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      +.++.|++.|.+++..+|..|+..|..+..           ..+++.|+.+|.++++.++..++++|.++..        
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            348899999999999999999999987753           2578999999999999999999999999863        


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                         .++++.|+.++.++   ++.++..++.+|..+..          ..+++.|+.++.+    .++.++..|+.+|.++
T Consensus        80 ---~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~  139 (211)
T 3ltm_A           80 ---ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRIAAAFALGEI  139 (211)
T ss_dssp             ---GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence               35789999999988   89999999999988742          4578999999987    7999999999999998


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064          292 SIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV  369 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~  369 (519)
                      ..          ..+++.|..++.++  .++..|+.+|..+..           ..+++.|..+++ ++++.++..|..+
T Consensus       140 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~A~~a  197 (211)
T 3ltm_A          140 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAE-TGTGFARKVAVNY  197 (211)
T ss_dssp             CC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHH-HCCHHHHHHHHHH
T ss_pred             CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHh-CCCHHHHHHHHHH
Confidence            53          35788899999654  589999999998842           346778888888 5789999999999


Q ss_pred             HHHHhcCCh
Q 010064          370 LMVMAHKSY  378 (519)
Q Consensus       370 L~nL~~~~~  378 (519)
                      |.++...+.
T Consensus       198 L~~~~~~~~  206 (211)
T 3ltm_A          198 LETHKSFNH  206 (211)
T ss_dssp             HHC------
T ss_pred             HHhcCCCCC
Confidence            999887643

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.17  E-value=1.5e-09  Score=106.83  Aligned_cols=199  Identities=13%  Similarity=0.043  Sum_probs=155.3

Q ss_pred             HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC
Q 010064          170 LAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL  249 (519)
Q Consensus       170 l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~  249 (519)
                      ....+.++.|+..|.++++.++..|+++|.++..           .++++.|+.+++++   +..++..++.+|..+...
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~---~~~vR~~A~~aL~~l~~~   84 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK---NYIRRDIGAFILGQIKIC   84 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS---SHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC---CHHHHHHHHHHHHHhccc
Confidence            3456789999999999999999999999999873           24789999999998   899999999999888644


Q ss_pred             CCChhhhhhCCChHHHHH-HhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHH
Q 010064          250 DSNKPIIGSSGAVPFLVK-TLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSI  326 (519)
Q Consensus       250 ~~~k~~I~~~gai~~LV~-lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~  326 (519)
                      +....     ..++.|.+ ++..    .+..++..++++|.++......    ....+++.|+.+|.++  .++..|+.+
T Consensus        85 ~~~~~-----~l~~~L~~~~~~d----~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~a  151 (280)
T 1oyz_A           85 KKCED-----NVFNILNNMALND----KSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFA  151 (280)
T ss_dssp             TTTHH-----HHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cccch-----HHHHHHHHHHhcC----CCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            33211     12344443 3344    6899999999999998643211    1124678888888654  588999999


Q ss_pred             HHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHH
Q 010064          327 LSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQK  406 (519)
Q Consensus       327 L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~  406 (519)
                      |+++..           ..+++.|++++. +.++.++..|+++|..+....+         .+++.|+.++.++++.++.
T Consensus       152 L~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~  210 (280)
T 1oyz_A          152 ISVIND-----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRI  210 (280)
T ss_dssp             HHTC--------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHH
T ss_pred             HHhcCC-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHH
Confidence            987653           358899999998 6789999999999999865433         3688999999999999999


Q ss_pred             HHHHHHHHhh
Q 010064          407 RASRILECLR  416 (519)
Q Consensus       407 ~A~~~L~~l~  416 (519)
                      .|.++|..+.
T Consensus       211 ~A~~aL~~~~  220 (280)
T 1oyz_A          211 EAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhC
Confidence            9999999886

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.16  E-value=1.4e-09  Score=101.53  Aligned_cols=182  Identities=20%  Similarity=0.168  Sum_probs=153.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ...+.+++.|.+++..+|..|+..|..+..           .+.++.|+.+|.++++.++..++++|..+..        
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            347899999999999999999999987763           2478999999999999999999999998864        


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                         ..+++.|+.++.++   ++.++..++.+|..+..          ..+++.|+.++.+    .++.++..|+++|.++
T Consensus        75 ---~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~  134 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKD----EDWFVRIAAAFALGEI  134 (201)
T ss_dssp             ---GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHh
Confidence               25789999999988   89999999999987642          3578999999987    6999999999999998


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064          292 SIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV  369 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~  369 (519)
                      ..          ..+++.|+.++.++  .++..|+.+|.++..           ..+++.|..++. +.++.++..|..+
T Consensus       135 ~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~A~~a  192 (201)
T 3ltj_A          135 GD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAE-TGTGFARKVAVNY  192 (201)
T ss_dssp             TC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHH-HCCHHHHHHHHHH
T ss_pred             CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHh-CCCHHHHHHHHHH
Confidence            53          45788899999654  599999999998832           346778888888 5789999999999


Q ss_pred             HHHHh
Q 010064          370 LMVMA  374 (519)
Q Consensus       370 L~nL~  374 (519)
                      |..+-
T Consensus       193 L~~l~  197 (201)
T 3ltj_A          193 LETHK  197 (201)
T ss_dssp             HHHCC
T ss_pred             HHHHH
Confidence            98764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.07  E-value=1.4e-09  Score=123.81  Aligned_cols=274  Identities=13%  Similarity=0.125  Sum_probs=196.7

Q ss_pred             chhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064          129 EALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA----MLGAIPPLAGMLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      .+.+.++.|++.+.+++...+..|+.+|..++...+..-..-.    -..+++.|+.+++++++.++..|+++|.++...
T Consensus       125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~  204 (852)
T 4fdd_A          125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS  204 (852)
T ss_dssp             TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            4566799999999999999999999999999865432211000    123678888888889999999999999988865


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ  282 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~~~~  282 (519)
                      .+..-... -..+++.|+.++.++   +..++..++.+|..++.....  +..+  .+.++.++.++.+    .+..++.
T Consensus       205 ~~~~~~~~-~~~~l~~l~~~~~d~---~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~----~~~~vr~  274 (852)
T 4fdd_A          205 RTQALMLH-IDSFIENLFALAGDE---EPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQD----QDENVAL  274 (852)
T ss_dssp             TCHHHHTS-HHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTC----SSHHHHH
T ss_pred             ccHHHHHH-HHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccC----CcHHHHH
Confidence            33211111 125788899988887   899999999999888754221  1111  2477888888877    6889999


Q ss_pred             HHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHc-----------CC-----------H--HHHHHHHHHHHHhcCCccc
Q 010064          283 DALRALYNLSIFPSNISFIL--ETDLIRYLLEML-----------GD-----------M--ELSERILSILSNLVSTPEG  336 (519)
Q Consensus       283 ~A~~aL~nLs~~~~n~~~l~--~~g~v~~Lv~lL-----------~~-----------~--~v~~~Al~~L~nLs~~~e~  336 (519)
                      .|+.++.+++........+.  -...++.|+..+           .+           .  .++..|..+|..|+.... 
T Consensus       275 ~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-  353 (852)
T 4fdd_A          275 EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-  353 (852)
T ss_dssp             HHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-
Confidence            99999999987653322211  124566666666           22           0  146778888888876321 


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                       ..+..  ..++.+.+.+. +.++.+++.|+++|.+++.+..+.... .-..++|.|+.++.+.++.++..|.++|..+.
T Consensus       354 -~~~~~--~l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~  428 (852)
T 4fdd_A          354 -DELLP--HILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYA  428 (852)
T ss_dssp             -GGGHH--HHHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred             -HHHHH--HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence             22333  37778888888 568999999999999999875442221 23567999999999999999999999999988


Q ss_pred             hc
Q 010064          417 VD  418 (519)
Q Consensus       417 ~~  418 (519)
                      +.
T Consensus       429 ~~  430 (852)
T 4fdd_A          429 HW  430 (852)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.02  E-value=3.5e-09  Score=120.51  Aligned_cols=300  Identities=11%  Similarity=-0.012  Sum_probs=197.8

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ...+..++.+|.++......  .+ .....+.++.+++.+.+++.+++..|+.+|..++...+..-.... .++++.++.
T Consensus       188 ~~vR~~A~~aL~~~~~~~~~--~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~  263 (852)
T 4fdd_A          188 PKIRSHAVACVNQFIISRTQ--AL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQ  263 (852)
T ss_dssp             HHHHHHHHHHHHTTTTTTCH--HH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccH--HH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHH
Confidence            44566666666665433221  11 112234578888888889999999999999999976543211111 247788888


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHHHHhhc-----------CCCC--------CCHHHHHHHH
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKMLKLIE-----------SPVA--------PNPSVSEAIV  240 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~Lv~lL~-----------s~~~--------~~~~~~~~a~  240 (519)
                      .+++.++.++..|+.++.+++.. ...+..+..  ..++|.|+..+.           +..+        .+..++..++
T Consensus       264 ~~~~~~~~vr~~a~e~l~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~  342 (852)
T 4fdd_A          264 RTQDQDENVALEACEFWLTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA  342 (852)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred             HccCCcHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence            88889999999999999999974 333332211  145777777772           2000        0123567777


Q ss_pred             HHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--H
Q 010064          241 ANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--E  318 (519)
Q Consensus       241 ~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~  318 (519)
                      .+|..++....  ..+ -...++.|...+.+    .+...+..|+++|.+++........-.-..+++.|+..+.|+  .
T Consensus       343 ~~L~~la~~~~--~~~-~~~l~~~l~~~l~~----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~  415 (852)
T 4fdd_A          343 AALDVLANVYR--DEL-LPHILPLLKELLFH----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL  415 (852)
T ss_dssp             HHHHHHHHHHG--GGG-HHHHHHHHHHHHTC----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHhcc--HHH-HHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            77777664321  111 12457777888876    689999999999999998764211112246788888888765  4


Q ss_pred             HHHHHHHHHHHhcCCc-c-cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHH
Q 010064          319 LSERILSILSNLVSTP-E-GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLEL  396 (519)
Q Consensus       319 v~~~Al~~L~nLs~~~-e-~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~L  396 (519)
                      ++..|+++|++++..- . ......  ...++.|++.|. +.++.+++.|+++|.+++......... .-.++++.|+.+
T Consensus       416 Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~  491 (852)
T 4fdd_A          416 VRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRIL-DSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFA  491 (852)
T ss_dssp             HHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHH
Confidence            9999999999998621 1 111122  247788888887 568999999999999999642221111 125678888888


Q ss_pred             hhcCCHHHHHHHHHHHHHhhh
Q 010064          397 TLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       397 l~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +..........+..++..+.+
T Consensus       492 l~~~~~~~~~~~~~ai~~l~~  512 (852)
T 4fdd_A          492 FSKYQHKNLLILYDAIGTLAD  512 (852)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHHHHHHHHHH
Confidence            887777666666677777663

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.99  E-value=3e-08  Score=108.51  Aligned_cols=277  Identities=15%  Similarity=0.100  Sum_probs=176.6

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +..+..++.+|.++...+ ..+.+        ++.+.+.|.+.++.+|..|+.++.++...+++.-   ...++++.|..
T Consensus       100 ~~ir~~AL~~L~~i~~~~-~~~~l--------~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~  167 (591)
T 2vgl_B          100 PLIRALAVRTMGCIRVDK-ITEYL--------CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRD  167 (591)
T ss_dssp             HHHHHHHHHHHHTCCSGG-GHHHH--------HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHH-HHHHH--------HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHH
Confidence            456677777777775222 22222        6678888999999999999999999987665432   23567899999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhh---------HHHHHh----------------------------cCcHHHHHHh
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLN---------KAAIVK----------------------------AGAVHKMLKL  224 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~n---------k~~iv~----------------------------aG~v~~Lv~l  224 (519)
                      +|.++++.++..|+.+|..++..++..         -..++.                            ..+++.+..+
T Consensus       168 lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~  247 (591)
T 2vgl_B          168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPR  247 (591)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTC
T ss_pred             HhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999865422         111221                            1345666666


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHhcc----CCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHH
Q 010064          225 IESPVAPNPSVSEAIVANFLGLSA----LDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISF  300 (519)
Q Consensus       225 L~s~~~~~~~~~~~a~~aL~~LS~----~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~  300 (519)
                      +++.   +..+...|+.++..+..    +++....+ -..+.+.|+.++.     .++.++..|+.+|..+.......  
T Consensus       248 l~~~---~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-----~d~~vr~~aL~~l~~i~~~~p~~--  316 (591)
T 2vgl_B          248 LSHA---NSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-----GEPEVQYVALRNINLIVQKRPEI--  316 (591)
T ss_dssp             SCSS---TTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-----SCHHHHHHHHHHHHHHHHHCCST--
T ss_pred             HcCC---ChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHhChHH--
Confidence            7776   78899999999999864    22222222 2345677776653     47888888999888886532110  


Q ss_pred             HHhcCcHHHHHHHcC-CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh
Q 010064          301 ILETDLIRYLLEMLG-DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG  379 (519)
Q Consensus       301 l~~~g~v~~Lv~lL~-~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~  379 (519)
                       +.. .+..+..... +..++..++.+|.+|+... +...      .++.|.+++. +.++.++..+++.+.+++...+.
T Consensus       317 -~~~-~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~-nv~~------iv~~L~~~l~-~~d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          317 -LKQ-EIKVFFVKYNDPIYVKLEKLDIMIRLASQA-NIAQ------VLAELKEYAT-EVDVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             -TTT-CTTTTSCCTTSCHHHHHHHHHHHHHTCCSS-THHH------HHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             -HHH-HHHhheeccCChHHHHHHHHHHHHHHCChh-hHHH------HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhChh
Confidence             000 1111111122 2347777777777776432 2222      3345666666 45677777777777777765432


Q ss_pred             hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          380 DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       380 ~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ..     ..+++.|++++.+....+...+...+..+.
T Consensus       387 ~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          387 SA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             HH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            11     235667777777666666666655555553

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.96  E-value=6e-09  Score=108.85  Aligned_cols=275  Identities=11%  Similarity=0.096  Sum_probs=191.3

Q ss_pred             chhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhh-HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 010064          129 EALEELKIVVKDLQSE--SEEQRREAASKVRSLAKEN-SET-RVTLAMLGAIPPLAGMLDFQ--LADSQISSLYALLNLG  202 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~-~~~-r~~l~~~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NLa  202 (519)
                      .+.+.++.|++.+.++  +...+..|+.+|..++... +.. ...+  ..+++.++.+|+++  ++.++..+++++.++.
T Consensus       125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~  202 (462)
T 1ibr_B          125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (462)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            4566789999999888  8899999999999998643 111 1111  23678888888887  7999999999999976


Q ss_pred             CCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCCCHH
Q 010064          203 IGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKVSPQ  279 (519)
Q Consensus       203 ~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~~~~  279 (519)
                      ...+.+- ......-+++.|...+.++   +..++..++.+|..+......  ...+ ....++.++..+..    .+..
T Consensus       203 ~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~~  274 (462)
T 1ibr_B          203 EFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS----DIDE  274 (462)
T ss_dssp             TTTHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC----SSHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC----CchH
Confidence            4322221 0111112567777777776   889999999888887653221  1211 12678888888877    6889


Q ss_pred             HHHHHHHHHHHhcCCCccH------------------HHHHh---cCcHHHHHHHcCC---------HHHHHHHHHHHHH
Q 010064          280 AKQDALRALYNLSIFPSNI------------------SFILE---TDLIRYLLEMLGD---------MELSERILSILSN  329 (519)
Q Consensus       280 ~~~~A~~aL~nLs~~~~n~------------------~~l~~---~g~v~~Lv~lL~~---------~~v~~~Al~~L~n  329 (519)
                      ++..|+..+.+++......                  ..+++   ...++.|+..|.+         ..++..|..+|..
T Consensus       275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~  354 (462)
T 1ibr_B          275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  354 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence            9999999998887542000                  00111   3356666677732         1378889999998


Q ss_pred             hcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHH
Q 010064          330 LVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRA  408 (519)
Q Consensus       330 Ls~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A  408 (519)
                      |+..-.  ..+..  .+++.+.+.+. +.++.+++.|+.++..++.+.. +..... -..++|.|+.++.+.++.+|..|
T Consensus       355 l~~~~~--~~~~~--~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a  428 (462)
T 1ibr_B          355 LATCCE--DDIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTA  428 (462)
T ss_dssp             HHHHTT--TTHHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHhcc--HHHHH--HHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHH
Confidence            887322  23333  37777888888 6789999999999999997643 111111 15689999999999999999999


Q ss_pred             HHHHHHhhhcC
Q 010064          409 SRILECLRVDK  419 (519)
Q Consensus       409 ~~~L~~l~~~~  419 (519)
                      +++|..+.+.-
T Consensus       429 ~~~l~~~~~~~  439 (462)
T 1ibr_B          429 AWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHHhc
Confidence            99999999654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.95  E-value=2e-09  Score=119.95  Aligned_cols=196  Identities=14%  Similarity=0.079  Sum_probs=147.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH-HhhcCCCHHHHHHHHHHHHHhcCC-ChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA-GMLDFQLADSQISSLYALLNLGIG-NDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv-~lL~s~~~~~~~~a~~aL~NLa~~-~~~nk~~  211 (519)
                      +.++++.|++.+...|..|+.+|.+|+. ++..+..+...|+|.+++ .+|..++.+++..|+++|.||+.. ..+....
T Consensus        36 i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~  114 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH  114 (684)
T ss_dssp             THHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence            7789999999999999999999999995 678999999999998865 578889999999999999999974 2566888


Q ss_pred             HHhcCcHHHHHHhhcCCC-------C----CC-------HHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcC
Q 010064          212 IVKAGAVHKMLKLIESPV-------A----PN-------PSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNS  272 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~-------~----~~-------~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~  272 (519)
                      ++..|++++|..+++...       .    ..       ..+.+.++.+|++|+... +....+...+.++.|+..|...
T Consensus       115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~  194 (684)
T 4gmo_A          115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA  194 (684)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence            999999999999875320       0    00       123345677888887543 3455677889999999988542


Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHH---HHHHcC-CHHHHHHHHHHHHHhc
Q 010064          273 DKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRY---LLEMLG-DMELSERILSILSNLV  331 (519)
Q Consensus       273 ~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~---Lv~lL~-~~~v~~~Al~~L~nLs  331 (519)
                       .....+++..|+.+|++|+.++. ....+.+.+....   |+.+.. +...+..++++|.|+.
T Consensus       195 -~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          195 -DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             -CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence             12467899999999999998775 5556666554332   222222 2235667889999974

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.88  E-value=4e-08  Score=105.84  Aligned_cols=259  Identities=12%  Similarity=0.064  Sum_probs=177.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.+.++.++++...|..|+..+..++..-...    ....+++.+..+++++++.++..++.+|..++......   ..
T Consensus       128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~  200 (588)
T 1b3u_A          128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NV  200 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hH
Confidence            444444556667788888888888887543221    12235788888888999999999999999998643321   22


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      ...++|.|..++.++   +..++..++.+|..++..-+.  .......+|.+..++..    .+..++..++.+|..++.
T Consensus       201 ~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d----~~~~vR~~a~~~l~~l~~  271 (588)
T 1b3u_A          201 KSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAED----KSWRVRYMVADKFTELQK  271 (588)
T ss_dssp             HHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHTC----SSHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHccC----CCHHHHHHHHHHHHHHHH
Confidence            456899999999888   889999988888777643221  11234578888888876    689999999999999975


Q ss_pred             CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCC--cccHH-HHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064          294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVST--PEGRK-AISRVPDAFPILVDVLNWTDSPGCQEKASY  368 (519)
Q Consensus       294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~--~e~r~-~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~  368 (519)
                      ....  .......++.++.++.|+  +++..|+.+|..++..  ++.+. ...  ...++.+..++. +.++.++..+++
T Consensus       272 ~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~p~l~~~l~-d~~~~vR~~a~~  346 (588)
T 1b3u_A          272 AVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM--SQILPCIKELVS-DANQHVKSALAS  346 (588)
T ss_dssp             HHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH--HTHHHHHHHHHT-CSCHHHHHHHHT
T ss_pred             HhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH--HHHHHHHHHHhc-CCCHHHHHHHHH
Confidence            3211  123346788899999654  5889999999988862  22221 222  247788888888 678899999988


Q ss_pred             HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +|..++..-..   ......++|.|+.++.+.++.+|..|..+|..+.
T Consensus       347 ~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~  391 (588)
T 1b3u_A          347 VIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             TGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence            88887642111   1112335666666666666666666665555444

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.84  E-value=9.6e-08  Score=102.85  Aligned_cols=261  Identities=15%  Similarity=0.101  Sum_probs=189.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.|...+.+++..+|..|+..|.+++...+..  .+ ..-+++.+..+..+++...+..++.+|..++......    .
T Consensus        89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~  161 (588)
T 1b3u_A           89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----V  161 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----H
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----H
Confidence            556666667788899999999999998664321  11 2234666667777888999999999999988754322    1


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      ...++|.|..+++++   ++.++..++.+|..+...-...  ......+|.|..++..    .+..++..|+.+|..++.
T Consensus       162 ~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d----~~~~vr~~a~~~l~~l~~  232 (588)
T 1b3u_A          162 KAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIAQ  232 (588)
T ss_dssp             HHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHH
Confidence            234788888888887   8999999999998887543221  2235678888888877    688999999999998875


Q ss_pred             CCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          294 FPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       294 ~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                      ....  .......++.+..++.|+  .++..++.+|..++..... ..+ . ...++.++.++. ..++.++..|+++|.
T Consensus       233 ~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~-d~~~~vr~~a~~~l~  306 (588)
T 1b3u_A          233 LLPQ--EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMK-DCEAEVRAAASHKVK  306 (588)
T ss_dssp             HSCH--HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred             hCCH--HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            4321  112234677777888654  4889999999999862111 112 2 347889999998 678999999999999


Q ss_pred             HHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          372 VMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       372 nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .++..-. +.+....-..++|.+..++.+.++.+|..+.++|..+.
T Consensus       307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9987522 22222344567899999999999999999888777665

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.80  E-value=9.5e-09  Score=114.45  Aligned_cols=192  Identities=14%  Similarity=0.120  Sum_probs=149.5

Q ss_pred             cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHH-HhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          215 AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVK-TLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       215 aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~-lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      ..++| +++.|+++   ++..+..|+++|.+|+.+++.+..+...++|..++. +|..    .+.+++..|+++|.||+.
T Consensus        34 ~~i~P-ll~~L~S~---~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D----~~~~Vr~~A~gaLrnL~~  105 (684)
T 4gmo_A           34 DKILP-VLKDLKSP---DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD----NNIDSRAAGWEILKVLAQ  105 (684)
T ss_dssp             HTTHH-HHHHHSSS---CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC----SCHHHHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHcCCC---CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHh
Confidence            34444 66778988   889999999999999988888888888888887665 5665    699999999999999996


Q ss_pred             C--CccHHHHHhcCcHHHHHHHcCC-----------------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcc
Q 010064          294 F--PSNISFILETDLIRYLLEMLGD-----------------------MELSERILSILSNLVS-TPEGRKAISRVPDAF  347 (519)
Q Consensus       294 ~--~~n~~~l~~~g~v~~Lv~lL~~-----------------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i  347 (519)
                      .  .+.+..++..|++++|..+|..                       .++.+.++.+|++|+. +.+....+.. .+.+
T Consensus       106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l  184 (684)
T 4gmo_A          106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTI  184 (684)
T ss_dssp             HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHH
T ss_pred             hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccH
Confidence            5  4578889999999999988721                       1256688999999997 5666667777 6899


Q ss_pred             hhhhhhccCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCc---HHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          348 PILVDVLNWT--DSPGCQEKASYVLMVMAHKSYGDRQAMIEAGI---ASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       348 ~~Lv~lL~~s--~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~---i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +.|+..|...  ....++..|+.+|++|+.++....+.+.+.+.   +..|+.+... +...+.-++.+|.++.
T Consensus       185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            9999988422  24679999999999999998888888887664   3344443333 3444667788888875

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=2.6e-07  Score=100.98  Aligned_cols=256  Identities=16%  Similarity=0.116  Sum_probs=187.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..+++.+.+.+...|..+...+..++..+++...     -++..|.+-|.++++.++..|+.+|+++..  ++.-.   
T Consensus        51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~---  120 (591)
T 2vgl_B           51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNPLIRALAVRTMGCIRV--DKITE---  120 (591)
T ss_dssp             HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHH---
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHH---
Confidence            66788888999999999999999888876554432     257888889999999999999999999874  33222   


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                        .+++.+.+++.++   ++.++..|+.++..+....+  ..+.+.+.++.|..+|.+    .++.++..|+.+|..++.
T Consensus       121 --~l~~~l~~~L~d~---~~~VRk~A~~al~~i~~~~p--~~~~~~~~~~~l~~lL~d----~d~~V~~~A~~aL~~i~~  189 (591)
T 2vgl_B          121 --YLCEPLRKCLKDE---DPYVRKTAAVCVAKLHDINA--QMVEDQGFLDSLRDLIAD----SNPMVVANAVAALSEISE  189 (591)
T ss_dssp             --HHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHHHHHTTSC----SCHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHcCCC---ChHHHHHHHHHHHHHHhhCh--hhcccccHHHHHHHHhCC----CChhHHHHHHHHHHHHHh
Confidence              2468899999988   89999999999998875422  223335778999999987    799999999999999987


Q ss_pred             CCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          294 FPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       294 ~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                      ... ....-+..+.++.|+..+.  ++-.+...+.+|.+++..++  ...   ...++.+..+++ +.++.++..|++++
T Consensus       190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~~~---~~~l~~l~~~l~-~~~~~V~~ea~~~i  263 (591)
T 2vgl_B          190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD--REA---QSICERVTPRLS-HANSAVVLSAVKVL  263 (591)
T ss_dssp             SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--HHH---HHHHHHHTTCSC-SSTTHHHHHHHHHH
T ss_pred             hCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--HHH---HHHHHHHHHHHc-CCChHHHHHHHHHH
Confidence            653 2111112244666777663  34467778888888775321  111   236677888888 56889999999999


Q ss_pred             HHHhcC---ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          371 MVMAHK---SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       371 ~nL~~~---~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      ..+...   +++..+.+ -..+.+.|+.++. +++.+|..|...|..+...
T Consensus       264 ~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~  312 (591)
T 2vgl_B          264 MKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQK  312 (591)
T ss_dssp             HHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence            998742   23333332 2345678887764 8899999999999999854

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.61  E-value=1.7e-06  Score=97.85  Aligned_cols=273  Identities=12%  Similarity=0.072  Sum_probs=189.3

Q ss_pred             chhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-hhhHHHHHh--cCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 010064          129 EALEELKIVVKDLQSE--SEEQRREAASKVRSLAKEN-SETRVTLAM--LGAIPPLAGMLDFQ--LADSQISSLYALLNL  201 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~-~~~r~~l~~--~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NL  201 (519)
                      .+.+.++.+++.+.++  +...+..|+.++..++..- ++   .+..  ..+++.++..+..+  +..++..++.+|.++
T Consensus       125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~  201 (876)
T 1qgr_A          125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS  201 (876)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            4566789999999888  8889999999999988642 11   1111  23567777888776  789999999999998


Q ss_pred             cCCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHHHHhhcCCCCCCH
Q 010064          202 GIGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSP  278 (519)
Q Consensus       202 a~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV~lL~~~~~~~~~  278 (519)
                      +...+.+- .......+++.+...+.+.   +..++..++.+|..+.....  ..+.+ ....++.++..+..    .+.
T Consensus       202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~----~~~  273 (876)
T 1qgr_A          202 LEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS----DID  273 (876)
T ss_dssp             GGGCHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTC----SSH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcC----Cch
Confidence            85323221 1111123678888888776   78999999888887764321  12222 23678888887766    688


Q ss_pred             HHHHHHHHHHHHhcCCCc---------------------cHHHHHhcCcHHHHHHHcC-------CH--HHHHHHHHHHH
Q 010064          279 QAKQDALRALYNLSIFPS---------------------NISFILETDLIRYLLEMLG-------DM--ELSERILSILS  328 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~---------------------n~~~l~~~g~v~~Lv~lL~-------~~--~v~~~Al~~L~  328 (519)
                      .++..|+.++.+++....                     ....-.-...++.++..|.       +.  .++..|..+|.
T Consensus       274 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~  353 (876)
T 1qgr_A          274 EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLM  353 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHH
Confidence            999999999988875320                     0000001245667777773       11  27788888888


Q ss_pred             HhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHH
Q 010064          329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKR  407 (519)
Q Consensus       329 nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~  407 (519)
                      .|+..-.  ..+..  .+++.+...+. +.++.+++.|++++..++.+.. +..... -..++|.|+..+.+.++.++..
T Consensus       354 ~l~~~~~--~~~~~--~~l~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~  427 (876)
T 1qgr_A          354 LLATCCE--DDIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDT  427 (876)
T ss_dssp             HHHHHHG--GGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHCc--HhhHH--HHHHHHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHH
Confidence            8876221  12333  36677777887 5789999999999999997643 322222 2458999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 010064          408 ASRILECLRVD  418 (519)
Q Consensus       408 A~~~L~~l~~~  418 (519)
                      |.++|..+...
T Consensus       428 a~~~l~~~~~~  438 (876)
T 1qgr_A          428 AAWTVGRICEL  438 (876)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999965

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.60  E-value=3e-06  Score=93.09  Aligned_cols=278  Identities=14%  Similarity=0.077  Sum_probs=188.2

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +..+..++.+|.++...+ .   .     ...++.+.+.|.+.++.+|..|+.++.++.+.+++.-     .++++.+..
T Consensus       121 ~~vr~lAL~~L~~i~~~~-~---~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~  186 (618)
T 1w63_A          121 QFVQGLALCTLGCMGSSE-M---C-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKN  186 (618)
T ss_dssp             SHHHHHHHHHHHHHCCHH-H---H-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTT
T ss_pred             HhHHHHHHHHHHhcCCHH-H---H-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHH
Confidence            456677777777776322 1   1     1227788888999999999999999999998776533     257888889


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCC------------CCCCHHHHHHHHHHHHHhccC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESP------------VAPNPSVSEAIVANFLGLSAL  249 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~------------~~~~~~~~~~a~~aL~~LS~~  249 (519)
                      +|...++.++..|+.+|..++..+++....+  ...+|.|+.+|.+-            ..+++-.+..++.+|..+...
T Consensus       187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~  264 (618)
T 1w63_A          187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN  264 (618)
T ss_dssp             STTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred             HhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence            9999999999999999999998644322222  25788888876530            001577777788888777754


Q ss_pred             CCChhhhhhCCChHHHHHHhhcCC--CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHH
Q 010064          250 DSNKPIIGSSGAVPFLVKTLKNSD--KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILS  325 (519)
Q Consensus       250 ~~~k~~I~~~gai~~LV~lL~~~~--~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~  325 (519)
                      ++.    .....++.|..++....  ...+..+...|+.++.++...+.    +. ..++..|..+|.  +++++..|+.
T Consensus       265 ~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~  335 (618)
T 1w63_A          265 DDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALT  335 (618)
T ss_dssp             CHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHH
T ss_pred             CHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHH
Confidence            321    12345667777765310  11345788889999988754321    11 246677888775  4458888888


Q ss_pred             HHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHH
Q 010064          326 ILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQ  405 (519)
Q Consensus       326 ~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~  405 (519)
                      +|..++..   ...++.  .....++..+. ++++.++..|..+|..|+...  +.+.     +++.|+..+.+.++..+
T Consensus       336 ~L~~i~~~---~p~~~~--~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~d~e~r  402 (618)
T 1w63_A          336 SLLKTVQT---DHNAVQ--RHRSTIVDCLK-DLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSCEPEFK  402 (618)
T ss_dssp             HHHHHHHH---HHHHHG--GGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHhh---CHHHHH--HHHHHHHHHcc-CCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhCCHHHH
Confidence            88888752   122233  25567777777 567888888999988888642  2222     34666777777777788


Q ss_pred             HHHHHHHHHhhh
Q 010064          406 KRASRILECLRV  417 (519)
Q Consensus       406 ~~A~~~L~~l~~  417 (519)
                      ..+..+|..++.
T Consensus       403 ~~~v~~I~~la~  414 (618)
T 1w63_A          403 ADCASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777775

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.53  E-value=2.5e-06  Score=93.81  Aligned_cols=252  Identities=14%  Similarity=0.053  Sum_probs=184.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..+.+.|.++|+..+..|+++|.++..  ++.-     ..+++.+..+|.+.++.++..|+.++.++...+++..    
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----  177 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM----  177 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----
Confidence            6677788889999999999999999883  2222     2357889999999999999999999999997655422    


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCCChHHHHHHhhcC----C-------CCCCHHHH
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSGAVPFLVKTLKNS----D-------KKVSPQAK  281 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~gai~~LV~lL~~~----~-------~~~~~~~~  281 (519)
                      + +.++.+..++.+.   ++.++..|+.+|..+....+. ...+  ...+|.|+.+|...    .       ...++-.+
T Consensus       178 ~-~~~~~l~~lL~D~---d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          178 E-MFLPATKNLLNEK---NHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             G-GGGGGTTTSTTCC---CHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             H-HHHHHHHHHhCCC---CHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence            2 6788888899887   899999999999998754221 1111  36788888877641    0       01478899


Q ss_pred             HHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC------CH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhh
Q 010064          282 QDALRALYNLSIFPSNISFILETDLIRYLLEMLG------DM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDV  353 (519)
Q Consensus       282 ~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~------~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~l  353 (519)
                      ...+.+|..++..+...    ....++.|..++.      +.  .+...|..++.++...+..+    .  .++..|..+
T Consensus       252 ~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~----~--~a~~~L~~~  321 (618)
T 1w63_A          252 VRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR----V--LAINILGRF  321 (618)
T ss_dssp             HHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH----H--HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH----H--HHHHHHHHH
Confidence            99999999998764321    1234445555541      22  37788999999886543222    2  356688888


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       354 L~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      |. +.++.++..|+.+|..++...+.    ++ ....+.++..+.+.++.+|.+|..+|..+...
T Consensus       322 L~-~~d~~vr~~aL~~L~~i~~~~p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          322 LL-NNDKNIRYVALTSLLKTVQTDHN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             HT-CSSTTTHHHHHHHHHHHHHHHHH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred             Hh-CCCCchHHHHHHHHHHHHhhCHH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence            88 56889999999999999875332    22 22566788888899999999999999888753

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.52  E-value=1.1e-06  Score=99.46  Aligned_cols=278  Identities=12%  Similarity=0.092  Sum_probs=183.2

Q ss_pred             hHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064          131 LEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSET-RVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL  207 (519)
Q Consensus       131 ~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~-r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~  207 (519)
                      ...++.+++.+..+  +..++..|+.++..+...-... ........+++.+...+..++.+++..++.+|..++...+.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            34467777777766  6888999999999877432111 00011112577777888888899999999999999975444


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-------------------CChhhhh--hCCChHHHH
Q 010064          208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-------------------SNKPIIG--SSGAVPFLV  266 (519)
Q Consensus       208 nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-------------------~~k~~I~--~~gai~~LV  266 (519)
                      .-...+...+++.++..+.+.   +..++..++..+..++...                   .....+.  -...+|.++
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll  327 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT  327 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHH
Confidence            323334447899999988877   7888888877666654321                   0111110  134567777


Q ss_pred             HHhhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCc--ccHHH
Q 010064          267 KTLKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTP--EGRKA  339 (519)
Q Consensus       267 ~lL~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~--e~r~~  339 (519)
                      ..+...+   .+.+...+..|+.+|..|+.....  .++ ..+++.+...+.+  ..+++.|+.+|++++...  +....
T Consensus       328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~  404 (876)
T 1qgr_A          328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  404 (876)
T ss_dssp             HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             HHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            7775421   013456888899999888753221  111 1345556666654  358999999999999742  22222


Q ss_pred             HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhH-HHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDR-QAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~-~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      ...  ..++.|+..+. +.++.++..|+++|.+++....... ..-.-..+++.|+..+.+. +.++..|.++|..+...
T Consensus       405 ~~~--~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          405 LVI--QAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHH--HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            333  48888999998 6789999999999999997532210 0001134678888888775 89999999999999854

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.48  E-value=1.3e-06  Score=98.65  Aligned_cols=270  Identities=13%  Similarity=0.180  Sum_probs=176.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh--hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh--H
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENS--ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN--K  209 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~--~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n--k  209 (519)
                      ++.+.+.|.+.++..|..|+.++..++....  .....+  ..+++.|+..+.++++.++..++++|.+++......  .
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            4555566678889999999999999996532  222222  247888999999999999999999999998531110  0


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--Chhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDAL  285 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~  285 (519)
                      ... -..++|.|+..+.++    +.++..++++|.++...-.  ....+..  ...++.|+.++...  ..+..++..++
T Consensus       449 ~~~-~~~~l~~l~~~l~~~----~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~--d~~~~vr~~a~  521 (861)
T 2bpt_A          449 QQH-LPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI--DNEFNARASAF  521 (861)
T ss_dssp             TTT-HHHHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS--CCGGGHHHHHH
T ss_pred             HHH-HHHHHHHHHHHhccC----hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc--CcchHHHHHHH
Confidence            011 123678888888663    7889999888887764311  0111111  34577888888752  12367899999


Q ss_pred             HHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC-----------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCc
Q 010064          286 RALYNLSIFPS-NISFILETDLIRYLLEMLGD-----------------MELSERILSILSNLVS-TPEGRKAISRVPDA  346 (519)
Q Consensus       286 ~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~-----------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~  346 (519)
                      .+|..+..... .....+. ..++.++..|.+                 .+++..++.+|.+++. .+..-.....  ..
T Consensus       522 ~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l  598 (861)
T 2bpt_A          522 SALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--ML  598 (861)
T ss_dssp             HHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HH
T ss_pred             HHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HH
Confidence            99999976433 2222222 355666655531                 1266789999999886 3222122222  47


Q ss_pred             chhhhhhccCCCCH-HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          347 FPILVDVLNWTDSP-GCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       347 i~~Lv~lL~~s~~~-~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ++.++.++. ..++ .+++.++.++..++......-...+ ..++|.|+..+.+.++.++..|..++..+..
T Consensus       599 ~~~l~~~l~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          599 MGLFFRLLE-KKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHHHHHH-STTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc-cCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            777888887 4445 7899999999998864222211111 2378899998887888888888888776653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.45  E-value=7.7e-06  Score=92.24  Aligned_cols=273  Identities=12%  Similarity=0.058  Sum_probs=185.6

Q ss_pred             chhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCh-hh---HHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 010064          129 EALEELKIVVKDLQSE-SEEQRREAASKVRSLAKENS-ET---RVTLAMLGAIPPLAGMLDFQ--LADSQISSLYALLNL  201 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~-~~~~~~~Aa~~L~~La~~~~-~~---r~~l~~~G~i~~Lv~lL~s~--~~~~~~~a~~aL~NL  201 (519)
                      .|.+.++.|++.+.++ +...+..|+.++..++..-. ..   ...+  ..+++.++..+.++  ++.++..++.+|.++
T Consensus       131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~  208 (861)
T 2bpt_A          131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADS  208 (861)
T ss_dssp             CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            4566789999999888 88999999999999886421 11   1111  22566777777776  899999999999997


Q ss_pred             cCCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHHHHhhcCCCCCCH
Q 010064          202 GIGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSP  278 (519)
Q Consensus       202 a~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV~lL~~~~~~~~~  278 (519)
                      ...-..+- .......+++.|...+.++   +..++..++.+|..+.....  ....+ ....++.+...+..    .+.
T Consensus       209 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~----~~~  280 (861)
T 2bpt_A          209 LIFIKNNMEREGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKS----PND  280 (861)
T ss_dssp             GGGCHHHHTSHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTC----SSH
T ss_pred             HHHHHHHccChhHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC----CcH
Confidence            53212210 0011123677777888777   78999999888877764321  12211 11556666666666    688


Q ss_pred             HHHHHHHHHHHHhcCCCcc------------------HHHHHhcCcHHHHHHHcCC---------HHHHHHHHHHHHHhc
Q 010064          279 QAKQDALRALYNLSIFPSN------------------ISFILETDLIRYLLEMLGD---------MELSERILSILSNLV  331 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~n------------------~~~l~~~g~v~~Lv~lL~~---------~~v~~~Al~~L~nLs  331 (519)
                      .++..|+.++..++.....                  .... -...++.|+..|.+         ..++..+..+|..|+
T Consensus       281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~  359 (861)
T 2bpt_A          281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA  359 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence            9999999999988754211                  1111 14567777777742         247788999998888


Q ss_pred             CCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064          332 STPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY-GDRQAMIEAGIASALLELTLLGSTLAQKRASR  410 (519)
Q Consensus       332 ~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~  410 (519)
                      ..-.  ..+..  ..++.+.+.+. +.++..++.|++++..++.+.. ......+ ..++|.|+..+.+.++.++..+.+
T Consensus       360 ~~~~--~~~~~--~l~~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~  433 (861)
T 2bpt_A          360 QNCG--NHILE--PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAW  433 (861)
T ss_dssp             HHHG--GGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHcc--HhHHH--HHHHHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHH
Confidence            6221  22222  36667777777 5689999999999999997642 2222222 257899999999999999999999


Q ss_pred             HHHHhhhc
Q 010064          411 ILECLRVD  418 (519)
Q Consensus       411 ~L~~l~~~  418 (519)
                      +|..+...
T Consensus       434 ~l~~l~~~  441 (861)
T 2bpt_A          434 CIGRIADS  441 (861)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988854

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.35  E-value=1.7e-06  Score=90.11  Aligned_cols=235  Identities=12%  Similarity=0.113  Sum_probs=153.5

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETR-VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r-~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .++.++..|...  +..+|..|+.++..+...-...- ......-+++.|...+.++++.++..++.+|..++...+..-
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  252 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            477788888877  78899999999998653211100 000011146667777788899999999999999986433211


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-------------------CChhhhh--hCCChHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-------------------SNKPIIG--SSGAVPFLVKT  268 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-------------------~~k~~I~--~~gai~~LV~l  268 (519)
                      ...+..++++.++..+++.   +..++..++..+..++...                   .....+.  -...+|.|+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~  329 (462)
T 1ibr_B          253 ETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (462)
T ss_dssp             TTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC---chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence            1112226788888888887   7889888877766665321                   1111110  13356677777


Q ss_pred             hhcCC---CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc--cHHHHh
Q 010064          269 LKNSD---KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPE--GRKAIS  341 (519)
Q Consensus       269 L~~~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e--~r~~i~  341 (519)
                      +...+   .+.+...+..|+.+|..|+..-..  .++ ..+++.+...|.++  .+++.|+.+|+.++....  .-....
T Consensus       330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l  406 (462)
T 1ibr_B          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (462)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred             HHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            75421   123456888999999988754321  111 23556666777654  488999999999997322  111122


Q ss_pred             hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                        ...++.|+..|. +.++.++..|+|+|.+++..
T Consensus       407 --~~~~~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          407 --IQAMPTLIELMK-DPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             --TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence              458899999998 57899999999999999964

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.22  E-value=0.00011  Score=69.52  Aligned_cols=185  Identities=16%  Similarity=0.202  Sum_probs=143.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +.+..|+.+|+..|...+..|+.+|.++.+.-+ ..+... -..+++.++.++++.|..+...|+++|.-|-.+.+-...
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            348889999999999999999999999887732 333322 235789999999999999999999999999987666666


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN  290 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n  290 (519)
                      .+..  ++.+|..+++++   +.-+++.++-.+-.+......+      +.+.+|..++.+    .+.+++..++.+|.|
T Consensus       112 ~y~K--l~~aL~dlik~~---~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S----kd~~vK~agl~~L~e  176 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESP---DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS----PDLYTKVAGFCLFLN  176 (265)
T ss_dssp             HHHH--HHHHHHHHTTSC---CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC----SSHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHhcCC---CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence            6655  468888999988   8999999999998885444433      357889999976    799999999999999


Q ss_pred             hcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCc
Q 010064          291 LSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTP  334 (519)
Q Consensus       291 Ls~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~  334 (519)
                      ++...+....+  ..++.-+-.+|.  |+.+.+.|+.+|..+...+
T Consensus       177 ia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          177 MLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             HGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             hhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            98755321111  223333444453  6679999999999999854

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.22  E-value=5e-05  Score=79.41  Aligned_cols=234  Identities=12%  Similarity=0.042  Sum_probs=161.4

Q ss_pred             HHHHhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcC--cHHHHHHhhcC----CC----------CCCHHHHHHHH
Q 010064          178 PLAGMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAG--AVHKMLKLIES----PV----------APNPSVSEAIV  240 (519)
Q Consensus       178 ~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG--~v~~Lv~lL~s----~~----------~~~~~~~~~a~  240 (519)
                      .++..|.. .+...+..++.+|..|... ++.|..+.+.+  .+|.++.++..    ..          .....++-.++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            35555655 3456677899999999994 99999998764  47777664431    10          00244566778


Q ss_pred             HHHHHhccCCCChhhhhhCCCh--HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-----cHH-HHHhcCcHHHHHH
Q 010064          241 ANFLGLSALDSNKPIIGSSGAV--PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-----NIS-FILETDLIRYLLE  312 (519)
Q Consensus       241 ~aL~~LS~~~~~k~~I~~~gai--~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-----n~~-~l~~~g~v~~Lv~  312 (519)
                      -++|-||..++....+...+.+  +.|+.+++..   ...++.+-++.+|.||.....     ... .++..++ .+++.
T Consensus       250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s---~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~  325 (480)
T 1ho8_A          250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT---IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQ  325 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC---CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHH
T ss_pred             HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHH
Confidence            8999999988766666666643  6778888874   678999999999999987651     223 2333455 44555


Q ss_pred             Hc-----CCHHHHH-------HHHHHHHHhcCCcccHHHHhh-------------------------cCCcchhhhhhcc
Q 010064          313 ML-----GDMELSE-------RILSILSNLVSTPEGRKAISR-------------------------VPDAFPILVDVLN  355 (519)
Q Consensus       313 lL-----~~~~v~~-------~Al~~L~nLs~~~e~r~~i~~-------------------------~~g~i~~Lv~lL~  355 (519)
                      .|     .|+++.+       .--..+..|++.++.+.++..                         .-..+..|+++|.
T Consensus       326 ~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~  405 (480)
T 1ho8_A          326 SLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQ  405 (480)
T ss_dssp             HHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            55     4555332       222223344434444443321                         1234678888887


Q ss_pred             C---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          356 W---------TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       356 ~---------s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .         +.++.+..-||.=++.++...+..|..+-+.|+=..+++|+.+.++.++..|..+++.+-
T Consensus       406 ~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          406 AKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             hhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            3         235777778888899999987888888889999999999999999999999999998775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.20  E-value=1.5e-06  Score=102.71  Aligned_cols=271  Identities=11%  Similarity=0.057  Sum_probs=182.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..++..+.+.+.+.|..|...|.+....+...-..-....+++.|+..|.+.++.+|..|+.+|.+++.....   ..
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQ   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HH
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HH
Confidence            377888889999999999999988886543210000000113578899999999999999999999999975443   11


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh------hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK------PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k------~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      + ..+++.|+..+.++   +..++..++.+|..++..-...      ..-.....+|.|+..+...   .+...+..|+.
T Consensus        84 ~-~~i~~~Ll~~l~d~---~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~---~~~~~~~~al~  156 (1230)
T 1u6g_C           84 V-ETIVDTLCTNMLSD---KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ---EDVSVQLEALD  156 (1230)
T ss_dssp             H-HHHHHHHHHHTTCS---SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC---SCHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC---CchHHHHHHHH
Confidence            1 23678888888877   6788888877776665321111      0111345789999988732   57899999999


Q ss_pred             HHHHhcCC--CccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHH
Q 010064          287 ALYNLSIF--PSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGC  362 (519)
Q Consensus       287 aL~nLs~~--~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~  362 (519)
                      +|..++..  ......  -...++.|+..|.+  +.++..|+.+|..++.....  .+.  ...++.|++.|....++..
T Consensus       157 ~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L~~~~~~~~  230 (1230)
T 1u6g_C          157 IMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMST  230 (1230)
T ss_dssp             HHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCS
T ss_pred             HHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHhccCCchhH
Confidence            99998742  111111  12355666666654  45999999999999874321  222  3467788887764333456


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCCc
Q 010064          363 QEKASYVLMVMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILECLRVDKGKQ  422 (519)
Q Consensus       363 qe~A~~~L~nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~~  422 (519)
                      +..++.++..++...+.   .+.  -..++|.++..+.+.++.++..+..++..+....+..
T Consensus       231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~  289 (1230)
T 1u6g_C          231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE  289 (1230)
T ss_dssp             CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH
Confidence            66788888888754222   111  1468999999999989999999999999888654433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.12  E-value=0.00032  Score=79.36  Aligned_cols=233  Identities=12%  Similarity=0.071  Sum_probs=160.0

Q ss_pred             HHHHHHHhcCCC--------HHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064          134 LKIVVKDLQSES--------EEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN  205 (519)
Q Consensus       134 l~~Lv~~L~s~~--------~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~  205 (519)
                      +..|...|.+.+        ...+..|+..|....-+. ...      .+++.|..+|..++..+...|+.+|+-+-.++
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS-~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~vGT  503 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS-ANI------EVYEALKEVLYNDSATSGEAAALGMGLCMLGT  503 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC-CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence            445555565443        456777777777754333 111      14677888888888777888989988775553


Q ss_pred             hhhHHHHHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          206 DLNKAAIVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       206 ~~nk~~iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                      ..+.       ++..|+..+. ..   +..++..++..|..+..        .+...++.|+.+|...   .++.++..+
T Consensus       504 gn~~-------ai~~LL~~~~e~~---~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~---~dp~vRyga  562 (963)
T 4ady_A          504 GKPE-------AIHDMFTYSQETQ---HGNITRGLAVGLALINY--------GRQELADDLITKMLAS---DESLLRYGG  562 (963)
T ss_dssp             CCHH-------HHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHC---SCHHHHHHH
T ss_pred             CCHH-------HHHHHHHHHhccC---cHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhC---CCHHHHHHH
Confidence            3222       3455555443 33   67788777666665543        2445788999998874   788899988


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHH
Q 010064          285 LRALYNLSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPG  361 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~  361 (519)
                      +.++.--..++.|..      +|+.|+..+   .+.+++..|+..|+.+....+         ..++.++++|..+.++.
T Consensus       563 a~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~  627 (963)
T 4ady_A          563 AFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAH  627 (963)
T ss_dssp             HHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHH
T ss_pred             HHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHH
Confidence            888876666665543      455666665   245688899999998765432         24567777666578999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          362 CQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       362 ~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ++..|+++|+.++.+++.       ..++..|..++.+.+..++..|..+|..+-
T Consensus       628 VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          628 VRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            999999999999987542       125677888888888888888888887665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.08  E-value=0.00053  Score=75.23  Aligned_cols=281  Identities=13%  Similarity=0.104  Sum_probs=175.8

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDL--QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPL  179 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L--~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~L  179 (519)
                      +..+.-+++++.++...+ ..+.        .++.+.+.|  .+.++.+|..|+.++.++.+.+++.-.   ..++++.|
T Consensus       125 ~~ir~lALr~L~~i~~~e-~~~~--------l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l  192 (621)
T 2vgl_A          125 PTFMGLALHCIANVGSRE-MAEA--------FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRV  192 (621)
T ss_dssp             HHHHHHHHHHHHHHCCHH-HHHH--------HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHH
T ss_pred             HHHHHHHHHHhhccCCHH-HHHH--------HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHH
Confidence            456777778888876433 2222        266777888  788999999999999999977654322   24899999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHH----hhcCCCC----------CCHHHHHHHHHHHHH
Q 010064          180 AGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLK----LIESPVA----------PNPSVSEAIVANFLG  245 (519)
Q Consensus       180 v~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~----lL~s~~~----------~~~~~~~~a~~aL~~  245 (519)
                      ..+|...++.++..|+.+|..++..++..   +  ...+|.++.    ++..+.-          +++-.+..++..|..
T Consensus       193 ~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          193 VHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            99999999999999999999998754432   1  123454444    3322100          135666666666666


Q ss_pred             hccCCC--ChhhhhhCCChHHHHHHhhcCC-----CCC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC-
Q 010064          246 LSALDS--NKPIIGSSGAVPFLVKTLKNSD-----KKV--SPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG-  315 (519)
Q Consensus       246 LS~~~~--~k~~I~~~gai~~LV~lL~~~~-----~~~--~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~-  315 (519)
                      +...++  .+..+.  ..+..++..+....     .+.  ...+...|+.++..+...++..     ..++..|..+|. 
T Consensus       268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~-----~~~~~~L~~~L~~  340 (621)
T 2vgl_A          268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLL-----VRACNQLGQFLQH  340 (621)
T ss_dssp             SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHSSC
T ss_pred             hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHHHhcC
Confidence            654321  122111  12333332221100     001  2377888888888886332222     235677888884 


Q ss_pred             -CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH
Q 010064          316 -DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALL  394 (519)
Q Consensus       316 -~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll  394 (519)
                       +++++.-++..|..++........ +.  .....++..|..++++.++..+..+|..|+.  +.+.+.     ++..|.
T Consensus       341 ~~~niry~aL~~l~~l~~~~~~~~~-~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~  410 (621)
T 2vgl_A          341 RETNLRYLALESMCTLASSEFSHEA-VK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEML  410 (621)
T ss_dssp             SCHHHHHHHHHHHHHHTTCTTTHHH-HH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhccCcHHH-HH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHH
Confidence             567999999999999874322222 33  2566777777634578899999999999985  344333     344556


Q ss_pred             HHhhcCCHHHHHHHHHHHHHhh
Q 010064          395 ELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       395 ~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ..+...+...+..+...+..++
T Consensus       411 ~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          411 SYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHH
Confidence            6666666666666666666665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.07  E-value=0.00036  Score=76.54  Aligned_cols=256  Identities=14%  Similarity=0.089  Sum_probs=177.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh--cCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML--DFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL--~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      +..+.+.|.++|+..+..|+.+|.++..  ++.-.     .+++++.++|  .+.++-++..|+.++.++...+++   .
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~  182 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---L  182 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---G
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---h
Confidence            5677778889999999999999999863  33333     3578889999  889999999999999999975443   2


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhh----cC-CC-C-------CCH
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLK----NS-DK-K-------VSP  278 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~----~~-~~-~-------~~~  278 (519)
                      +...+.++.|.++|.+.   ++.++..|+.+|..+.....  ..+  ...+|.++..|.    .. .+ .       .++
T Consensus       183 ~~~~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~  255 (621)
T 2vgl_A          183 VPMGDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP  255 (621)
T ss_dssp             CCCCSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred             cCchhHHHHHHHHhCCC---CccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence            22248899999999887   89999999999988875432  111  234555555443    21 00 0       167


Q ss_pred             HHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHc-C----------C--HHHHHHHHHHHHHhcCCcccHHHHhhc
Q 010064          279 QAKQDALRALYNLSIFPS--NISFILETDLIRYLLEML-G----------D--MELSERILSILSNLVSTPEGRKAISRV  343 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL-~----------~--~~v~~~Al~~L~nLs~~~e~r~~i~~~  343 (519)
                      -.+...+..|..++..++  ....+.+  .+..++..+ .          +  ..+..+|..++..+...++...     
T Consensus       256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----  328 (621)
T 2vgl_A          256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----
T ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----
Confidence            899999999998886432  2332322  333333322 1          1  1477788888888875443332     


Q ss_pred             CCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhhc
Q 010064          344 PDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       344 ~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~l~~~  418 (519)
                       .++..|..+|. +.++.++-.|...|..++...+. ...+  ....+.++..+. +.++.++.+|..+|..+..+
T Consensus       329 -~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          329 -RACNQLGQFLQ-HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             -HHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred             -HHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence             25567888887 57899999999999999976432 1222  235667777777 88899999999988887743

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.03  E-value=7.8e-05  Score=71.34  Aligned_cols=180  Identities=15%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          136 IVVKDLQSESEEQRREAASKVRSLAKENSETR-VTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r-~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      .+.+.+.+.++..|..|+..|..+....+... ..+  ..+++.|...|. ..+..++..|+.+|..|+..-...-...+
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            47778889999999999999999886522210 001  124677888884 88999999999999999964222111222


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                       .-++|.|+..+.++   +..+++.+..+|..+......      ...++.|...+..    .++.++..++..|..+..
T Consensus        97 -~~ilp~ll~~l~d~---~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           97 -SACVPSLLEKFKEK---KPNVVTALREAIDAIYASTSL------EAQQESIVESLSN----KNPSVKSETALFIARALT  162 (242)
T ss_dssp             -HHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTC----SCHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcC----CChHHHHHHHHHHHHHHH
Confidence             23799999999998   899999999999988764321      2246777788776    689999999999999644


Q ss_pred             C--Cc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC
Q 010064          294 F--PS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS  332 (519)
Q Consensus       294 ~--~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~  332 (519)
                      .  ++ .....+ ...++.|+.+|.|  .+++..|..+|+.|+.
T Consensus       163 ~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          163 RTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             TCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            3  22 112222 2678899999964  4699999999998875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.99  E-value=6.8e-05  Score=88.54  Aligned_cols=222  Identities=15%  Similarity=0.140  Sum_probs=153.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-----
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-----  208 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-----  208 (519)
                      ++.+++.|.+.+..+|..|+.+|..++..-.+  ..+  ..+++.|+..|.++++.++..++.+|..++......     
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~  125 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA  125 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence            77888989988999999999999999865433  111  225788888888888889999999999988542221     


Q ss_pred             -HHHHHhcCcHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhccCC-C-ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          209 -KAAIVKAGAVHKMLKLIES-PVAPNPSVSEAIVANFLGLSALD-S-NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       209 -k~~iv~aG~v~~Lv~lL~s-~~~~~~~~~~~a~~aL~~LS~~~-~-~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                       .... -..++|.|+..+.+ +   +..++..++.+|..+.... + ..+.  -...++.|+..+..    .+..++..|
T Consensus       126 ~~~~~-~~~llp~L~~~l~~~~---~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~----~~~~vR~~a  195 (1230)
T 1u6g_C          126 LAANV-CKKITGRLTSAIAKQE---DVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTS----PRLAVRKRT  195 (1230)
T ss_dssp             THHHH-HHHHHHHHHHHHSCCS---CHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGC----SSHHHHHHH
T ss_pred             hHHHH-HHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcC----CcHHHHHHH
Confidence             1111 23478999999984 5   7899999988888876321 1 1111  13356666777766    578999999


Q ss_pred             HHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC---HHHHHHHHHHHHHhcC-CcccHHHHh-hcCCcchhhhhhccCCCC
Q 010064          285 LRALYNLSIFPSNISFILETDLIRYLLEMLGD---MELSERILSILSNLVS-TPEGRKAIS-RVPDAFPILVDVLNWTDS  359 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~---~~v~~~Al~~L~nLs~-~~e~r~~i~-~~~g~i~~Lv~lL~~s~~  359 (519)
                      +.+|..++......  + -...++.|+..|.+   ..++..++.++..++. .+.   .+. .....++.++..+. ..+
T Consensus       196 ~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~-d~~  268 (1230)
T 1u6g_C          196 IIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCN-VDD  268 (1230)
T ss_dssp             HHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHS-SCC
T ss_pred             HHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhc-CCC
Confidence            99999998754321  1 12457778777732   2355567777777765 222   111 11357888888887 567


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 010064          360 PGCQEKASYVLMVMAHK  376 (519)
Q Consensus       360 ~~~qe~A~~~L~nL~~~  376 (519)
                      +.+++.+..++..++..
T Consensus       269 ~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          269 DELREYCIQAFESFVRR  285 (1230)
T ss_dssp             TTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88999999999988875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.86  E-value=0.0011  Score=62.59  Aligned_cols=220  Identities=12%  Similarity=0.111  Sum_probs=154.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-
Q 010064          175 AIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-  252 (519)
Q Consensus       175 ~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-  252 (519)
                      .+..|+.+|...|+.++..++.+|-++-..-+.. +..+++ ..+|.++.++++.   +..+.-.|+.+|..|-.+.+. 
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~---dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE---NEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST---THHHHHHHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc---chhHHHHHHHHHHHHHcCCCCC
Confidence            5678999999999999999999999999853333 434444 4899999999998   899999999999887655432 


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHh
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNL  330 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nL  330 (519)
                      ...+  .-.+..|+.++.+    .+.-....|+..|.-|..-....      .++..+.+++.  +..++..++.+|.|+
T Consensus       110 ~~~y--~Kl~~aL~dlik~----~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          110 SKTF--LKAAKTLVSLLES----PDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             HHHH--HHHHHHHHHHTTS----CCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHhcC----CCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            2222  1235677777776    79999999999999883222121      23456677775  455999999999999


Q ss_pred             cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHHh-hcCCHHHHHH
Q 010064          331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY--GDRQAMIEAGIASALLELT-LLGSTLAQKR  407 (519)
Q Consensus       331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~--~~~~~i~~~G~i~~Ll~Ll-~~gs~~~~~~  407 (519)
                      +...+....+.   ..+.-+-++|+ +.++.+++.|..++-.+...+-  +....+.  ++....-.+. ..|.|..+.+
T Consensus       178 a~~S~D~~i~~---~I~~eI~elL~-~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~k  251 (265)
T 3b2a_A          178 LNSSADSGHLT---LILDEIPSLLQ-NDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLK  251 (265)
T ss_dssp             GGGCSSCCCGG---GTTTTHHHHHT-CSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHH
T ss_pred             hcccCCHHHHH---HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHH
Confidence            98443333222   35667888998 6799999999999999887632  1111111  1222223333 4789999999


Q ss_pred             HHHHHHHhh
Q 010064          408 ASRILECLR  416 (519)
Q Consensus       408 A~~~L~~l~  416 (519)
                      |...-..+.
T Consensus       252 a~~v~~~le  260 (265)
T 3b2a_A          252 AKKVSDLID  260 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888766654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.86  E-value=1.5e-06  Score=75.54  Aligned_cols=119  Identities=16%  Similarity=0.136  Sum_probs=85.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .++.++..|++++..+|..|++.|..+..            ..++.|+.+|+++++.++..++++|.++..  +      
T Consensus        13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~------   72 (131)
T 1te4_A           13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E------   72 (131)
T ss_dssp             --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H------
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H------
Confidence            36778888888888888888877765431            126888899988899999999999988763  1      


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                         .+++.|+.+++++   ++.++..++++|..+.          ...+++.|+.++..    .+..++..|+.+|.+|
T Consensus        73 ---~a~~~L~~~L~d~---~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d----~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ---RAVEPLIKLLEDD---SGFVRSGAARSLEQIG----------GERVRAAMEKLAET----GTGFARKVAVNYLETH  131 (131)
T ss_dssp             ---HHHHHHHHHHHHC---CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTS----CCTHHHHHHHHHGGGC
T ss_pred             ---HHHHHHHHHHcCC---CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC----CCHHHHHHHHHHHHhC
Confidence               2578888888877   7889998888888764          23468888888876    6788888888887653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.77  E-value=0.00013  Score=69.83  Aligned_cols=183  Identities=10%  Similarity=0.071  Sum_probs=130.8

Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCCh-hhhhhCCChHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcCCC
Q 010064          219 HKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNK-PIIGSSGAVPFLVKTLK-NSDKKVSPQAKQDALRALYNLSIFP  295 (519)
Q Consensus       219 ~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k-~~I~~~gai~~LV~lL~-~~~~~~~~~~~~~A~~aL~nLs~~~  295 (519)
                      +.+.+.+.+.   +...+..++..|..+... +... ..+  ...++.|..++. .    .+..++..|+.+|..|+..-
T Consensus        18 ~~l~~~l~s~---~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd----~~~~V~~~a~~~l~~la~~l   88 (242)
T 2qk2_A           18 KDFYDKLEEK---KWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD----SNVVLVAMAGKCLALLAKGL   88 (242)
T ss_dssp             TTHHHHHTCS---SHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccC---CHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHHH
Confidence            3467778777   788898888888776543 2210 111  245777888885 6    69999999999999998532


Q ss_pred             ccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064          296 SNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM  373 (519)
Q Consensus       296 ~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL  373 (519)
                      .....-.-...++.|+..++|+  .+++.|..+|.++.....    +   ..+++.|...|. +.++.++..++..|..+
T Consensus        89 ~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~-~~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           89 AKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L---EAQQESIVESLS-NKNPSVKSETALFIARA  160 (242)
T ss_dssp             GGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTT-CSCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHc-CCChHHHHHHHHHHHHH
Confidence            2111112234788888888764  489999999999987432    1   136778888898 57899999999999996


Q ss_pred             hcC-Chh--hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCC
Q 010064          374 AHK-SYG--DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVDKG  420 (519)
Q Consensus       374 ~~~-~~~--~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~  420 (519)
                      ... .++  ....+  ..++|.|+.++.+..+.+|..|..+|..+...-+
T Consensus       161 l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          161 LTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            543 232  12222  2589999999999999999999999999885433

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.76  E-value=2.8e-06  Score=73.73  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=88.4

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064          173 LGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       173 ~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                      ...++.|+.+|+++++.++..|+++|.++...            .++.|+.+++++   ++.++..++++|.++..    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~---~~~vR~~A~~aL~~~~~----   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNE---DWRIRGAAAWIIGNFQD----   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCS---CHHHHHHHHHHHGGGCS----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCC---CHHHHHHHHHHHHhcCC----
Confidence            45788999999999999999999999877532            269999999987   89999999999887752    


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSN  329 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~n  329 (519)
                            ..+++.|+.++.+    .+..++..|+++|.++..          ..+++.|+.+|.++  .++..|..+|.+
T Consensus        72 ------~~a~~~L~~~L~d----~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ------ERAVEPLIKLLED----DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ------HHHHHHHHHHHHH----CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                  3468999999987    689999999999999862          24678899998654  488888888764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00013  Score=70.57  Aligned_cols=188  Identities=11%  Similarity=0.083  Sum_probs=128.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-HhccChhhHHHHHh-cCCHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCh-hhHH-H
Q 010064          137 VVKDLQSESEEQRREAASKVRS-LAKENSETRVTLAM-LGAIPPLAGML-DFQLADSQISSLYALLNLGIGND-LNKA-A  211 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~-La~~~~~~r~~l~~-~G~i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~-~nk~-~  211 (519)
                      +.+.+.+.++..|..|+..|.. +..+.+.....-.+ ..++..|...| +..+..++..|+.+|..|+.+-. ..-. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3455689999999999999999 87543222100001 12467788888 67899999999999999996421 1111 1


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN  290 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n  290 (519)
                      ... -++|.++..+++.   ...+++.+..+|..+...- +.-..---...++.|+..|.+    .+++++..++.+|..
T Consensus       101 y~~-~llp~ll~~l~dk---k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~----k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          101 YVS-LVFTPLLDRTKEK---KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH----KTPQIRMECTQLFNA  172 (249)
T ss_dssp             HHH-HHHHHHHHGGGCC---CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC----CChHHHHHHHHHHHH
Confidence            212 2789999999988   7889888888887766432 111000001257778888877    689999999999999


Q ss_pred             hcCCCcc--HH--HHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcC
Q 010064          291 LSIFPSN--IS--FILETDLIRYLLEMLGDM--ELSERILSILSNLVS  332 (519)
Q Consensus       291 Ls~~~~n--~~--~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~  332 (519)
                      +......  ..  ..+....++.|..++.|.  +++..|..+|+.++.
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8854432  12  222357899999999754  599999999988764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.58  E-value=0.0012  Score=67.13  Aligned_cols=242  Identities=14%  Similarity=0.085  Sum_probs=155.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ...+++.+.+.|...|.-.--.+.++++..++.  .+    ++..|.+=++++++-++-.|+++|+++...  +    ++
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~----m~  137 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--II----VTSSLTKDMTGKEDSYRGPAVRALCQITDS--T----ML  137 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--GG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--T----TH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--HH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--H----HH
Confidence            567888999999999999888888888764332  12    678888889999999999999999999974  2    22


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      + .+.+.+-+.|.+.   ++.++..|+-+...|-..  +.+.+  .+.++.+-.++..    .++.++..|+.+|+.+..
T Consensus       138 ~-~l~~~lk~~L~d~---~pyVRk~A~l~~~kL~~~--~pe~v--~~~~~~l~~ll~d----~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          138 Q-AIERYMKQAIVDK---VPSVSSSALVSSLHLLKC--SFDVV--KRWVNEAQEAASS----DNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             H-HHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTT--CHHHH--HTTHHHHHHHTTC----SSHHHHHHHHHHHHHHHT
T ss_pred             H-HHHHHHHHHcCCC---CHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHhcC----CCccHHHHHHHHHHHHHh
Confidence            2 2567788888888   899999998888887643  33433  3688999999887    689999999999999987


Q ss_pred             CCccHHHHHhcCcHHHHHHHcC-----CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064          294 FPSNISFILETDLIRYLLEMLG-----DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY  368 (519)
Q Consensus       294 ~~~n~~~l~~~g~v~~Lv~lL~-----~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~  368 (519)
                      .+..        ++..|+..+.     ++=.+...+.++..+...++..   .. ...++.|..+|+ +.++.+.-+|+.
T Consensus       206 ~d~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~-~~~~~~l~~~L~-~~~~aVvyEa~k  272 (355)
T 3tjz_B          206 NDRL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RD-SPLFDFIESCLR-NKHEMVVYEAAS  272 (355)
T ss_dssp             TCHH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCC-CSSHHHHHHHHH
T ss_pred             hchH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hH-HHHHHHHHHHHc-CCChHHHHHHHH
Confidence            5421        2333444432     2223334444444443321000   11 345667777888 678999999999


Q ss_pred             HHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          369 VLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      +++.|...+..    +. ..++..|..++.+.++.+|--|.+.|..+..
T Consensus       273 ~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          273 AIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             HHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred             HHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            99998653222    11 2335666677778888888888777777764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.023  Score=51.84  Aligned_cols=212  Identities=12%  Similarity=0.083  Sum_probs=152.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +.+..++..|..+-+.+|.+|+..|..+++.-++.-..+     +..|+.|++ +....+....+++++.++.-+++--.
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~  106 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK  106 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence            348899999998889999999999999998887777655     457777774 57788888899999999976554322


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN  290 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n  290 (519)
                           +.||.|..-..-+   ++..+-....+|-.+....  ...  -.+.+.-+..++.+    .+..-+..|+..+..
T Consensus       107 -----~vVp~lfanyrig---d~kikIn~~yaLeeIaran--P~l--~~~v~rdi~smlts----kd~~Dkl~aLnFi~a  170 (253)
T 2db0_A          107 -----SMIPVLFANYRIG---DEKTKINVSYALEEIAKAN--PML--MASIVRDFMSMLSS----KNREDKLTALNFIEA  170 (253)
T ss_dssp             -----HHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHC--HHH--HHHHHHHHHHHTSC----SSHHHHHHHHHHHHT
T ss_pred             -----hhHHHHHHHHhcC---CccceecHHHHHHHHHHhC--hHH--HHHHHHHHHHHhcC----CChHHHHHHHHHHHH
Confidence                 3678888888888   8999999988888776432  111  23356677778877    455555555555554


Q ss_pred             hcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064          291 LSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS  367 (519)
Q Consensus       291 Ls~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~  367 (519)
                      +..   |...- -.-.+|.|..+|.|.+  ++..|+.+|.||+. ++..|+.+.+       .++-++ ..+..++....
T Consensus       171 lGe---n~~~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~-------kl~e~~-D~S~lv~~~V~  238 (253)
T 2db0_A          171 MGE---NSFKY-VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK-------RLEELN-DTSSLVNKTVK  238 (253)
T ss_dssp             CCT---TTHHH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------HHHHCC-CSCHHHHHHHH
T ss_pred             Hhc---cCccc-cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH-------HHHHhc-CcHHHHHHHHH
Confidence            443   32221 2457889999996654  88899999999998 6665655544       344555 45788888888


Q ss_pred             HHHHHHhcC
Q 010064          368 YVLMVMAHK  376 (519)
Q Consensus       368 ~~L~nL~~~  376 (519)
                      ..|..|+.-
T Consensus       239 egL~rl~l~  247 (253)
T 2db0_A          239 EGISRLLLL  247 (253)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            888877653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.50  E-value=0.015  Score=53.02  Aligned_cols=211  Identities=17%  Similarity=0.174  Sum_probs=147.9

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhccCCCC
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE-SPVAPNPSVSEAIVANFLGLSALDSN  252 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~-s~~~~~~~~~~~a~~aL~~LS~~~~~  252 (519)
                      .++..++.+|+.+--.+|.+|+..+.+++..-++-...     .+..|+-+++ +.   ...+...++.++-.++.-   
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksE---aIpltqeIa~a~G~la~i---  100 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSE---AIPLTQEIAKAFGQMAKE---  100 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcc---cCchHHHHHHHHhHHHHh---
Confidence            46788999998888899999999999999875554443     3456666654 44   566666677777777642   


Q ss_pred             hhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHh
Q 010064          253 KPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDME--LSERILSILSNL  330 (519)
Q Consensus       253 k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nL  330 (519)
                      ++.++. +.||.|..=..-    ++++++.+-..+|-.++..+..    +-.+++.-+..++.+++  -+..|+..   +
T Consensus       101 ~Pe~v~-~vVp~lfanyri----gd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnF---i  168 (253)
T 2db0_A          101 KPELVK-SMIPVLFANYRI----GDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNF---I  168 (253)
T ss_dssp             CHHHHH-HHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHH---H
T ss_pred             CHHHHH-hhHHHHHHHHhc----CCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHH---H
Confidence            333321 234444444444    7999999999999998864421    22345677888887665  23334444   4


Q ss_pred             cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064          331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR  410 (519)
Q Consensus       331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~  410 (519)
                      ..-.++.-..+.  -.+|.|..+|. .++..++..|+.+|.+|+..++..|..+.      .-++-+.+.+..+++....
T Consensus       169 ~alGen~~~yv~--PfLprL~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~e  239 (253)
T 2db0_A          169 EAMGENSFKYVN--PFLPRIINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKE  239 (253)
T ss_dssp             HTCCTTTHHHHG--GGHHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHH
T ss_pred             HHHhccCccccC--cchHHHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHH
Confidence            443344444444  38999999999 68899999999999999999888766543      2355667888999999999


Q ss_pred             HHHHhh
Q 010064          411 ILECLR  416 (519)
Q Consensus       411 ~L~~l~  416 (519)
                      .|..+.
T Consensus       240 gL~rl~  245 (253)
T 2db0_A          240 GISRLL  245 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988876

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.49  E-value=0.002  Score=64.34  Aligned_cols=149  Identities=14%  Similarity=0.080  Sum_probs=123.3

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHH-hcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHH
Q 010064          263 PFLVKTLKNSDKKVSPQAKQDALRALYN-LSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKA  339 (519)
Q Consensus       263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~n-Ls~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~  339 (519)
                      ..++.-|.+    .+...+..++.-|.. ++.+.+-...+++.+++..|+.++.  +.+.+..++.+|.+|-.+..+...
T Consensus       121 ~~iiekL~~----~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          121 NAILEKLYS----SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHH----CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHhc----CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence            345566666    578889999999998 6677788999999999999999994  567999999999999999889988


Q ss_pred             HhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC----------cHHHHHHHhh---cCCHHHHH
Q 010064          340 ISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG----------IASALLELTL---LGSTLAQK  406 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G----------~i~~Ll~Ll~---~gs~~~~~  406 (519)
                      ++.+..+|..|..++. +....+.+.|..+|.+++..++.+...+.++=          -.+.|+.++.   .++..++.
T Consensus       197 vvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             HHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             hhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence            8876789999999999 67899999999999999988776655544321          2778999997   67899999


Q ss_pred             HHHHHHHHhh
Q 010064          407 RASRILECLR  416 (519)
Q Consensus       407 ~A~~~L~~l~  416 (519)
                      .|..++-.+-
T Consensus       276 ~amtLIN~lL  285 (339)
T 3dad_A          276 YTVTLINKTL  285 (339)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888876543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.43  E-value=0.015  Score=65.80  Aligned_cols=242  Identities=12%  Similarity=0.060  Sum_probs=157.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML-DFQLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL-~s~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +.+..|...|...+...+..|+..|..+--+. -+..      ++..|+..+ +..+..++..++.+|..+..++++   
T Consensus       472 ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---  541 (963)
T 4ady_A          472 EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---  541 (963)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence            34666777777666655666766766653222 1111      345666654 346788999999999998887444   


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYN  290 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~n  290 (519)
                            .++.+++.|....  ++.++..++.++ .++....     ++..+|..|+..+.+.   .+..+++.|+.+|..
T Consensus       542 ------~~~~li~~L~~~~--dp~vRygaa~al-glAyaGT-----Gn~~aIq~LL~~~~~d---~~d~VRraAViaLGl  604 (963)
T 4ady_A          542 ------LADDLITKMLASD--ESLLRYGGAFTI-ALAYAGT-----GNNSAVKRLLHVAVSD---SNDDVRRAAVIALGF  604 (963)
T ss_dssp             ------GGHHHHHHHHHCS--CHHHHHHHHHHH-HHHTTTS-----CCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhCC--CHHHHHHHHHHH-HHHhcCC-----CCHHHHHHHHHHhccC---CcHHHHHHHHHHHHh
Confidence                  5677777776431  566666554443 3333222     1233577788877764   678899999999999


Q ss_pred             hcCCCccHHHHHhcCcHHHHHHHc---CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHH
Q 010064          291 LSIFPSNISFILETDLIRYLLEML---GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKAS  367 (519)
Q Consensus       291 Ls~~~~n~~~l~~~g~v~~Lv~lL---~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~  367 (519)
                      +....+        ..++.++.+|   .++.++..|..+|+.++..... ..      ++..|..+++ ..++.++..|+
T Consensus       605 I~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~-D~d~~Vrq~Ai  668 (963)
T 4ady_A          605 VLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTK-DPVDFVRQAAM  668 (963)
T ss_dssp             HTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHT-CSSHHHHHHHH
T ss_pred             hccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHcc-CCCHHHHHHHH
Confidence            876653        2455666655   3566999999999999874332 22      4446667777 67899999999


Q ss_pred             HHHHHHhcCChhh-HHHHHHcCcHHHHHHHhhc--CCHHHHHHHHHHHHHhhhc
Q 010064          368 YVLMVMAHKSYGD-RQAMIEAGIASALLELTLL--GSTLAQKRASRILECLRVD  418 (519)
Q Consensus       368 ~~L~nL~~~~~~~-~~~i~~~G~i~~Ll~Ll~~--gs~~~~~~A~~~L~~l~~~  418 (519)
                      .+|..+..+..+. ...+  ......|...+.+  .++.++-.|..++..+.-.
T Consensus       669 ~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG  720 (963)
T 4ady_A          669 IALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG  720 (963)
T ss_dssp             HHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred             HHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence            9999998764432 0011  1123345566653  4678888888888888733

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.38  E-value=0.00099  Score=64.38  Aligned_cols=189  Identities=9%  Similarity=0.022  Sum_probs=127.0

Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHH-hcc-CCCChhhhhh-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-
Q 010064          221 MLKLIESPVAPNPSVSEAIVANFLG-LSA-LDSNKPIIGS-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-  296 (519)
Q Consensus       221 Lv~lL~s~~~~~~~~~~~a~~aL~~-LS~-~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-  296 (519)
                      +.+.+++.   +..-+.+++..|.. +.. .+.......+ ...+..|.+.+...   .+..++..|+.+|..|+..-. 
T Consensus        21 f~~~l~s~---~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D---~n~~v~~~A~~al~~la~~l~~   94 (249)
T 2qk1_A           21 FQERITSS---KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD---ANIQAVALAAQSVELICDKLKT   94 (249)
T ss_dssp             HHHHHTCS---SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHhhcC---CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhccc
Confidence            34566776   78888888888888 753 2221100112 24577778888432   789999999999999984221 


Q ss_pred             -cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHH-hhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          297 -NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAI-SRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       297 -n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i-~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                       ....-.-.-.++.++..+++  +.+++.+..+|..++. .+..-..- .  ..+++.|+..|. +.++.+++.++.+|.
T Consensus        95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~-~k~~~vk~~al~~l~  171 (249)
T 2qk1_A           95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMK-HKTPQIRMECTQLFN  171 (249)
T ss_dssp             TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTT-CSSHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHc-CCChHHHHHHHHHHH
Confidence             11101112368888888876  4588888888888776 21111100 1  136778888998 569999999999999


Q ss_pred             HHhcCChhh-HH--HHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          372 VMAHKSYGD-RQ--AMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       372 nL~~~~~~~-~~--~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .++...... .+  ..+...++|.|..++.+.++.+|..|..+|.-+..-
T Consensus       172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            888653321 11  122257899999999999999999999999998854

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.32  E-value=0.0015  Score=68.35  Aligned_cols=232  Identities=18%  Similarity=0.187  Sum_probs=154.2

Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcC--CHHHHHHhhcC---------------C--CHHHHHHHHH
Q 010064          137 VVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLG--AIPPLAGMLDF---------------Q--LADSQISSLY  196 (519)
Q Consensus       137 Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G--~i~~Lv~lL~s---------------~--~~~~~~~a~~  196 (519)
                      ++..|.. ++.+.+.-++.++..|.+.+ ++|..+.+.+  .+++++.+++.               +  ...++-.++.
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            4445554 24455667899999999764 9999887643  47788765541               1  3567899999


Q ss_pred             HHHHhcCCChhhHHHHHhcCcH--HHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Ch-----hhhhhCCChHHHHHH
Q 010064          197 ALLNLGIGNDLNKAAIVKAGAV--HKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NK-----PIIGSSGAVPFLVKT  268 (519)
Q Consensus       197 aL~NLa~~~~~nk~~iv~aG~v--~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k-----~~I~~~gai~~LV~l  268 (519)
                      +++-|+.. ++....+...++.  +.|+.+++...  .+.+...++++|.||..... ..     ..+...++ +.+++.
T Consensus       251 ~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~--KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~  326 (480)
T 1ho8_A          251 LIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQS  326 (480)
T ss_dssp             HHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHH
T ss_pred             HHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHH
Confidence            99999995 6677777777754  77778777642  68999999999999876542 21     12223344 556666


Q ss_pred             hhcCCCCCCHHHHHHHHHHH-------HHhcC---------------CCc---------cHHHHHhc--CcHHHHHHHcC
Q 010064          269 LKNSDKKVSPQAKQDALRAL-------YNLSI---------------FPS---------NISFILET--DLIRYLLEMLG  315 (519)
Q Consensus       269 L~~~~~~~~~~~~~~A~~aL-------~nLs~---------------~~~---------n~~~l~~~--g~v~~Lv~lL~  315 (519)
                      |... +=.++++..+.-...       ..+++               ++.         |..++-+.  ..+..|+.+|.
T Consensus       327 L~~r-k~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~  405 (480)
T 1ho8_A          327 LSER-KYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQ  405 (480)
T ss_dssp             HHSS-CCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHH
T ss_pred             HhhC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            6653 224555444332221       11221               111         11122222  36788889885


Q ss_pred             C------------HHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          316 D------------MELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       316 ~------------~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      +            +.+..-||.=|+.++. +|++|..+.+ .|+=..++++|. +.+++++.+|..++--+...
T Consensus       406 ~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~-lg~K~~VM~Lm~-h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          406 AKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLN-HSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHH-cCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence            2            2266678888999998 8999988777 688888999999 67999999999888776643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.24  E-value=0.0038  Score=62.32  Aligned_cols=155  Identities=14%  Similarity=0.102  Sum_probs=121.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..+++.|.+++...+..++..|..+-..|...-..|+..+++..|+.+....+...+..++.||.+|-.. ...-.-+
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v~Gm~gv  197 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-VDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-cccccch
Confidence            466788888888999999999999995546778999999999999999999999999999999999999985 6666566


Q ss_pred             Hh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC-Chhhhhh----------CCChHHHHHHhhcCCCCCCHHH
Q 010064          213 VK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS-NKPIIGS----------SGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       213 v~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~-~k~~I~~----------~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      +. ...|..+..++.+.   +..+...|+.+|..+....+ +...+.+          .-.+..|+.+|.+. ...+.++
T Consensus       198 vs~~~fI~~lyslv~s~---~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~-~~~D~el  273 (339)
T 3dad_A          198 VAHSDTIQWLYTLCASL---SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK-NGADPEL  273 (339)
T ss_dssp             HHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-TSCCHHH
T ss_pred             hCCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-CCCCHHH
Confidence            64 46789999999876   78999999999988876554 3333322          12377899999721 1168899


Q ss_pred             HHHHHHHHHHhc
Q 010064          281 KQDALRALYNLS  292 (519)
Q Consensus       281 ~~~A~~aL~nLs  292 (519)
                      +.+|...+--+.
T Consensus       274 q~~amtLIN~lL  285 (339)
T 3dad_A          274 LVYTVTLINKTL  285 (339)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            998877665443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.22  E-value=0.012  Score=67.19  Aligned_cols=262  Identities=15%  Similarity=0.147  Sum_probs=174.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCh---hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENS---ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKA  210 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~---~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~  210 (519)
                      +..+.+.+......  ..|+..+..|+....   ..--.+  .+.+|.++..+......++.+|..++..+...-+.+..
T Consensus        56 ~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           56 FGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             HHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            66666666655444  778888888885531   222222  25788888888777788998888887777754333322


Q ss_pred             HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh--CCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          211 AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS--SGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       211 ~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~--~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                          ..++|.|+..|++..  .-..+..|+.++-.|+...  ...+..  ...||.+-..+..    ..+++...|..++
T Consensus       132 ----~~~~~~~~~~~~~~~--kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d----~k~~v~~~~~~~~  199 (986)
T 2iw3_A          132 ----KALLPHLTNAIVETN--KWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWD----TKKEVKAAATAAM  199 (986)
T ss_dssp             ----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTC----SSHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcccc--chHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhccc----CcHHHHHHHHHHH
Confidence                347899999887642  4677888888888887543  344443  5667777777766    7899999999999


Q ss_pred             HHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHH
Q 010064          289 YNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASY  368 (519)
Q Consensus       289 ~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~  368 (519)
                      ..+|..-+|...   ...+|.|+..+.+|+-..+++..|+.-+-..+.-......  .+|.|..-|. .....+++.++-
T Consensus       200 ~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~--~~p~l~r~l~-~~~~~~~r~~~~  273 (986)
T 2iw3_A          200 TKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSI--MVPLLSRGLN-ERETGIKRKSAV  273 (986)
T ss_dssp             HHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHH--HHHHHHHHHT-SSSHHHHHHHHH
T ss_pred             HHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHH--HHHHHHhhhc-cCcchhheeeEE
Confidence            988865444332   3568889998877654444444443322222222222221  4566666676 457788899999


Q ss_pred             HHHHHhcCChhhHH-HHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhh
Q 010064          369 VLMVMAHKSYGDRQ-AMIEAGIASALLELTLL-GSTLAQKRASRILECLRV  417 (519)
Q Consensus       369 ~L~nL~~~~~~~~~-~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~  417 (519)
                      ++-|||.--.+.+. +-+-...+|.|...... .+|++|..|.+++.-|..
T Consensus       274 ~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          274 IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             EEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            99999974322222 22345677887776664 689999999999999974

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.01  E-value=0.0051  Score=62.48  Aligned_cols=240  Identities=15%  Similarity=0.030  Sum_probs=132.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      .+..+.+.++++|+-.+-.|+++|+++...+  .-..     +.+++.+.|.+.++-++..|+.+...|...+++.    
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----  173 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----  173 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----
Confidence            3677888889999999999999999998443  3332     4567888889999999999999999999865553    


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ++ +.++.+-+++.+.   ++-++-.|+++|..+...+  +.      ++..|+..+... ...++-.+..-+..+..+.
T Consensus       174 v~-~~~~~l~~ll~d~---n~~V~~~Al~lL~ei~~~d--~~------a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~  240 (355)
T 3tjz_B          174 VK-RWVNEAQEAASSD---NIMVQYHALGLLYHVRKND--RL------AVSKMISKFTRH-GLKSPFAYCMMIRVASRQL  240 (355)
T ss_dssp             HH-TTHHHHHHHTTCS---SHHHHHHHHHHHHHHHTTC--HH------HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC-
T ss_pred             HH-HHHHHHHHHhcCC---CccHHHHHHHHHHHHHhhc--hH------HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhc
Confidence            22 6889999999888   8899989999898887543  11      456667766652 1125666666666555544


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                      ..++.   -.....++.|...|.  ++.+.-+|+.++..|...+.   .+..  .++..|..+|. +.++.+|-.|...|
T Consensus       241 ~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~~~~--~a~~~L~~fLs-s~d~niryvaLr~L  311 (355)
T 3tjz_B          241 EDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---KELA--PAVSVLQLFCS-SPKAALRYAAVRTL  311 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHH-SSSSSSHHHHHHCC
T ss_pred             cccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---HHHH--HHHHHHHHHHc-CCCchHHHHHHHHH
Confidence            33210   011234445555554  34588899999988866321   1222  35667777787 56788998888888


Q ss_pred             HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064          371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR  410 (519)
Q Consensus       371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~  410 (519)
                      ..+....++.-+.     .-.-+.+++.+++..+...|..
T Consensus       312 ~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait  346 (355)
T 3tjz_B          312 NKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT  346 (355)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence            8888764432111     2233455666666555554443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.68  E-value=0.014  Score=66.67  Aligned_cols=260  Identities=13%  Similarity=0.121  Sum_probs=167.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh--hHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL--NKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~--nk~~  211 (519)
                      +..+++.+...+...+..|+..|..+...+....  ....+++..|.+.+......  +.|+.++..|+.....  ..+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~   91 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP   91 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence            5567777776555566777778877665431111  11135678888888764333  8999999999954322  1222


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNL  291 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nL  291 (519)
                      ++ .+.+|.++....+.   ...++.+|..++..+...-+ ...+  ...+|.|+..|...   ..-+.+..|+.+|..|
T Consensus        92 ~~-~~~~~~~~~~~~dk---~~~v~~aa~~~~~~~~~~~~-~~a~--~~~~~~~~~~~~~~---~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           92 YI-VQLVPAICTNAGNK---DKEIQSVASETLISIVNAVN-PVAI--KALLPHLTNAIVET---NKWQEKIAILAAFSAM  161 (986)
T ss_dssp             HH-HTTHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSC-GGGH--HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHH
T ss_pred             ch-HHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHhCC-HHHH--HHHHHHHHHHhccc---cchHHHHHHHHHHHHH
Confidence            22 25788888888887   78888888776666543211 1111  45689999999773   5789999999999999


Q ss_pred             cCCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHH
Q 010064          292 SIFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYV  369 (519)
Q Consensus       292 s~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~  369 (519)
                      +..........=-..||.+...+-|  +++...|..++..++..-.++.    ....+|.|++-+.+   |.-...++..
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~---p~~~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIAD---PTEVPETVHL  234 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHC---TTHHHHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcC---hhhhHHHHHH
Confidence            8643221111123567777777765  4699999999999987444443    24588999999983   3334344444


Q ss_pred             HHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          370 LMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       370 L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      |..-+.-.+-..-.+  +=.+|.|.+=+...+...+++++.++.||+
T Consensus       235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~  279 (986)
T 2iw3_A          235 LGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMC  279 (986)
T ss_dssp             HTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             hhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchh
Confidence            443332211111110  114677777777889999999999999999

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.072  Score=51.65  Aligned_cols=183  Identities=14%  Similarity=0.167  Sum_probs=116.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccChhh--HHHHH-hc-CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh-----
Q 010064          137 VVKDLQSESEEQRREAASKVRSLAKENSET--RVTLA-ML-GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL-----  207 (519)
Q Consensus       137 Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~--r~~l~-~~-G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~-----  207 (519)
                      +-+.|.+.++..|.+|+..|..+.......  ..... .. ..++.+-.++...+..++..++.+|..++.....     
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            567899999999999999999876443211  11111 12 2455666788889999999999999988753221     


Q ss_pred             hHHHHHhcCcHHHHHH-hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          208 NKAAIVKAGAVHKMLK-LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       208 nk~~iv~aG~v~~Lv~-lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      ......-..++|.|+. .+.+.   ...++..+..++..+.........     .+..++..+.+    .++.++..++.
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~---k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~----Knpkv~~~~l~  161 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSS---RATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK----KLPKLIAAAAN  161 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCC---CHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC----SCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc----cCHHHHHHHHH
Confidence            1222223457888886 47776   788888888877776543222222     24555556666    79999999999


Q ss_pred             HHHHhcCC--Cc--cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064          287 ALYNLSIF--PS--NISFILETDLIRYLLEMLG--DMELSERILSILSNLVS  332 (519)
Q Consensus       287 aL~nLs~~--~~--n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~  332 (519)
                      .|.++...  ..  +....+ ..+++.+..+|.  +++++..|..++..|-.
T Consensus       162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            99887532  11  111111 123445566665  45699999888887754

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=95.88  E-value=0.096  Score=55.58  Aligned_cols=238  Identities=13%  Similarity=0.085  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhc--CCHHHHHHhh--cC-----C---CHHHHHHHHHHHH
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAML--GAIPPLAGML--DF-----Q---LADSQISSLYALL  199 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~--G~i~~Lv~lL--~s-----~---~~~~~~~a~~aL~  199 (519)
                      +.++.|+..|-+..++.|--|+..|+.+.+............  ...--|+.+|  +.     .   -..+++.|+++|+
T Consensus       174 qfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          174 DFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             GTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            346788888889999999999999999876642110000011  2222333322  21     1   1469999999999


Q ss_pred             HhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhh-CCChHHHHHHhhcCCCCCCH
Q 010064          200 NLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGS-SGAVPFLVKTLKNSDKKVSP  278 (519)
Q Consensus       200 NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~-~gai~~LV~lL~~~~~~~~~  278 (519)
                      .+ ..-+..      ..++..|+..+..+   .-+++..+.-.|..+      +..+.+ .++++.++.-|..    .+.
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~---~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D----~DD  313 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSG---DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSS----PDE  313 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCS---CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTC----SSH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCC---CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCC----ccc
Confidence            99 654443      44566666555665   678888777777777      233322 4556666666766    689


Q ss_pred             HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CC-HH---HHHHHHHHHHHhcCCcccHHHHhhcCCcchhh
Q 010064          279 QAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GD-ME---LSERILSILSNLVSTPEGRKAISRVPDAFPIL  350 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~-~~---v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~L  350 (519)
                      +++..|+.+|.-++ .+         ..++.++.++    .+ ++   -....+..|+.|+..+.  .+-.+ +..+|.|
T Consensus       314 DVRAVAAetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~~d-p~LVPRL  380 (800)
T 3oc3_A          314 DIKLLSAELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELSIP-PERLKDI  380 (800)
T ss_dssp             HHHHHHHHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCCCC-SGGGGGT
T ss_pred             HHHHHHHHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccccC-hHHHHHH
Confidence            99999999999998 33         2333343333    21 11   34456677777777543  12223 5799999


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064          351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE  413 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~  413 (519)
                      .-++. +.-+.++..+..+|..+..  ...-..        ....++...++.+++.+..+..
T Consensus       381 ~PFLR-HtITSVR~AVL~TL~tfL~--~~~LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          381 FPCFT-SPVPEVRTSILNMVKNLSE--ESIDFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGGT-CSSHHHHHHHHHHTTTCCC--HHHHHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             Hhhhc-CCcHHHHHHHHHHHHHHHh--hhHHHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999 5688999999999887771  121111        2244556778888877766664

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.38  E-value=1.6  Score=49.72  Aligned_cols=255  Identities=10%  Similarity=0.088  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc------CCCHHHHHHHHHHHHHhcCCChhhHHHHHhc-----C
Q 010064          148 QRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD------FQLADSQISSLYALLNLGIGNDLNKAAIVKA-----G  216 (519)
Q Consensus       148 ~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~------s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~a-----G  216 (519)
                      .+..|...|..|+....  .. +. .-+++.+-.++.      +.+...++.|+.+++.++.+...... -...     .
T Consensus       377 ~R~aa~~~L~~l~~~~~--~~-v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~  451 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNE--VL-VT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLN  451 (960)
T ss_dssp             HHHHHHHHHHHHHHHCH--HH-HH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCC
T ss_pred             cHHHHHHHHHHHHHHcc--hh-HH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-Cccccccccc
Confidence            45667788888886542  11 11 112334444454      45667899999999999753110000 0000     1


Q ss_pred             cHHHHH----HhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          217 AVHKML----KLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       217 ~v~~Lv----~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      ..+.|.    ..+.++.+.++-++..++++|...+..- .+. . -...++.++..|.+    .+..++..|++||.+++
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~-l~~~l~~l~~~L~d----~~~~V~~~A~~Al~~~~  524 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-Q-LIELMPILATFLQT----DEYVVYTYAAITIEKIL  524 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-H-HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-H-HHHHHHHHHHHhCC----CChhHHHHHHHHHHHHH
Confidence            222222    2233331115888999999998887542 111 1 23356777777766    58999999999999998


Q ss_pred             CCCc---------cHHHHHh--cCcHHHHHHHcCCH-----H--HHHHHHHHHHHhcC--CcccHHHHhhcCCcchhhhh
Q 010064          293 IFPS---------NISFILE--TDLIRYLLEMLGDM-----E--LSERILSILSNLVS--TPEGRKAISRVPDAFPILVD  352 (519)
Q Consensus       293 ~~~~---------n~~~l~~--~g~v~~Lv~lL~~~-----~--v~~~Al~~L~nLs~--~~e~r~~i~~~~g~i~~Lv~  352 (519)
                      ...+         ....+..  ...++.|+.++...     +  ..+.++.+|..++.  .++... ...  ..++.|..
T Consensus       525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~--~l~~~L~~  601 (960)
T 1wa5_C          525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP--QLLAQFIE  601 (960)
T ss_dssp             TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHH
T ss_pred             hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH--HHHHHHHH
Confidence            7421         1111111  23455555565431     1  23455555555443  111111 111  13333333


Q ss_pred             hc----cCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          353 VL----NWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       353 lL----~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .+    +..+++.....+..++..++.. .++.. .-+...++|.+..++..........+..++..+.+.
T Consensus       602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence            33    3345677777788888888875 23322 334456788888888876555666666666666543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.27  E-value=0.28  Score=48.56  Aligned_cols=138  Identities=12%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhc--CcHHHHHHHcC--CHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhh
Q 010064          276 VSPQAKQDALRALYNLSIFPSNISFILET--DLIRYLLEMLG--DMELSERILSILSNLVST-PEGRKAISRVPDAFPIL  350 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~--g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~L  350 (519)
                      ..+..+.-++++|.|+..++..+..+...  .++..+...+.  +..++..+..++.|++.. ...+. ..+...++..+
T Consensus       160 ~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-~~~~~~ll~~l  238 (304)
T 3ebb_A          160 GKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-IEGKAQCLSLI  238 (304)
T ss_dssp             SCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC-chHHHHHHHHH
Confidence            46677999999999999988877666643  33444444443  445888899999999872 11111 11111244455


Q ss_pred             hhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 010064          351 VDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILEC  414 (519)
Q Consensus       351 v~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~  414 (519)
                      ..++....+++..-.+.-+|++|...+.+.++.....|+...+-.+... ..+++.+.+..+|+.
T Consensus       239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            5566545678888888999999998766555555556666655555544 467777777777654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.99  E-value=1.1  Score=42.75  Aligned_cols=231  Identities=15%  Similarity=0.199  Sum_probs=144.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHh-cCCHHHHHHhh-------cCCC----HHHH-HHHHHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAM-LGAIPPLAGML-------DFQL----ADSQ-ISSLYALLN  200 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~-~G~i~~Lv~lL-------~s~~----~~~~-~~a~~aL~N  200 (519)
                      +..++..|.  +++.|..|+..|.+--..-++..-.+.. -|.+..|++=+       ..+.    ..-+ -.|+..|--
T Consensus         5 i~qli~~L~--~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc   82 (268)
T 2fv2_A            5 IYQWINELS--SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC   82 (268)
T ss_dssp             HHHHHHHTS--STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence            445555555  3445777877776643333455555655 56666665322       2111    2223 344444555


Q ss_pred             hcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC--hhhhhhCCChHHHHHHhhcCCCCC
Q 010064          201 LGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN--KPIIGSSGAVPFLVKTLKNSDKKV  276 (519)
Q Consensus       201 La~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~--k~~I~~~gai~~LV~lL~~~~~~~  276 (519)
                      +|. +++-|..++++.+.-.|.-+|....-  +-+-++-.+.+++..|...++.  -..+.+.+.||..++.+..    +
T Consensus        83 vAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~----G  157 (268)
T 2fv2_A           83 VAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMES----G  157 (268)
T ss_dssp             HHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHH----S
T ss_pred             HHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhh----c
Confidence            666 59999999999887666666654421  1245667788888888866442  2333478999999999999    7


Q ss_pred             CHHHHHHHHHHHHHhcCCCccHHHHHhc--------CcHHHHHHHc-C--CHHHHHHHHHHHHHhcCCcccHHHHhhc-C
Q 010064          277 SPQAKQDALRALYNLSIFPSNISFILET--------DLIRYLLEML-G--DMELSERILSILSNLVSTPEGRKAISRV-P  344 (519)
Q Consensus       277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~--------g~v~~Lv~lL-~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~  344 (519)
                      +.-.+.-|.-++..+..++.....+...        .++..++.-+ .  ++.+...++++-..|+.++..|.++... +
T Consensus       158 selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP  237 (268)
T 2fv2_A          158 SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLP  237 (268)
T ss_dssp             CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSC
T ss_pred             cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCc
Confidence            9999999999998887766554444432        2333444433 2  3448889999999999999999988752 0


Q ss_pred             Ccc--hhhhhhccCCCCHHHHHHHHHHHHHH
Q 010064          345 DAF--PILVDVLNWTDSPGCQEKASYVLMVM  373 (519)
Q Consensus       345 g~i--~~Lv~lL~~s~~~~~qe~A~~~L~nL  373 (519)
                      ..+  ..+..+++  +++..+..-...+.|+
T Consensus       238 ~~Lrd~tf~~~l~--~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          238 DQLKDTTFAQVLK--DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             GGGTSSTTHHHHT--SCHHHHHHHHHHHHHS
T ss_pred             HHhhChHHHHHHh--cCHHHHHHHHHHHHhc
Confidence            111  12333444  4677766666666554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.53  E-value=2.7  Score=47.86  Aligned_cols=217  Identities=10%  Similarity=0.107  Sum_probs=120.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCCHHH----HHHhhcCC---CHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          143 SESEEQRREAASKVRSLAKENSETRVTLA----MLGAIPP----LAGMLDFQ---LADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       143 s~~~~~~~~Aa~~L~~La~~~~~~r~~l~----~~G~i~~----Lv~lL~s~---~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      +.++..|..|+.++..++.........+.    ...+.+.    ++..|.++   ++-++..++++|..++..-  .+. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~-  492 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKA-  492 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHH-
Confidence            45667788888888888743100000000    0012222    33344555   8999999999999998642  222 


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC---------Chhhhhh--CCChHHHHHHhhcCCCCC-C-H
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS---------NKPIIGS--SGAVPFLVKTLKNSDKKV-S-P  278 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---------~k~~I~~--~gai~~LV~lL~~~~~~~-~-~  278 (519)
                      .. ..+++.++..|.++   +..++..|+.+|.++....+         .+..+..  ...++.|+.++...   + . .
T Consensus       493 ~l-~~~l~~l~~~L~d~---~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~---~~~~~  565 (960)
T 1wa5_C          493 QL-IELMPILATFLQTD---EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH---GSSPE  565 (960)
T ss_dssp             HH-HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT---CCCHH
T ss_pred             HH-HHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc---cCCCC
Confidence            22 23688888888877   78999999999999876321         2333322  33455666666651   1 0 1


Q ss_pred             H--HHHHHHHHHHHhcCC--CccHHHHHhcCcHHHHHHHc----C---CHHHHHHHHHHHHHhcC--CcccHHHHhhcCC
Q 010064          279 Q--AKQDALRALYNLSIF--PSNISFILETDLIRYLLEML----G---DMELSERILSILSNLVS--TPEGRKAISRVPD  345 (519)
Q Consensus       279 ~--~~~~A~~aL~nLs~~--~~n~~~l~~~g~v~~Lv~lL----~---~~~v~~~Al~~L~nLs~--~~e~r~~i~~~~g  345 (519)
                      +  ....+..+|..++..  .+..+. . ...++.|+..+    .   ++.+...++.+|+.++.  .++....+.+  .
T Consensus       566 ~~~~~e~l~~al~~vv~~~~~~~~p~-~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~--~  641 (960)
T 1wa5_C          566 KLAENEFLMRSIFRVLQTSEDSIQPL-F-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVD--S  641 (960)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTTGGG-H-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHH--H
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhhH-H-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHH--H
Confidence            1  223455555554321  111111 1 12334444444    2   33466667777777765  3444444554  4


Q ss_pred             cchhhhhhccCCCCHHHHHHHHHHHHHHh
Q 010064          346 AFPILVDVLNWTDSPGCQEKASYVLMVMA  374 (519)
Q Consensus       346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~  374 (519)
                      .++.+..+|. .......+.+..++..|.
T Consensus       642 ~~p~~~~iL~-~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          642 MMPTFLTVFS-EDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHHHHH-TTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hhhHhhHHHHHHHHHHHH
Confidence            7788888887 444455666666655554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.32  E-value=1.2  Score=43.08  Aligned_cols=174  Identities=13%  Similarity=0.079  Sum_probs=111.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhh----cCCCHHHHHHHHHHHHHhcCCChh--hH
Q 010064          136 IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGML----DFQLADSQISSLYALLNLGIGNDL--NK  209 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL----~s~~~~~~~~a~~aL~NLa~~~~~--nk  209 (519)
                      .+...|.+.+...+..|+..|......++  +..+.   .+..++..+    -+.+..+...++.+|..+...-.+  .+
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            44555667788888889988888654442  23232   233333332    356888888888888877521000  00


Q ss_pred             HHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          210 AAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRAL  288 (519)
Q Consensus       210 ~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL  288 (519)
                      -.-.+ .-.+|.|+.-+.++   ...+++.+-.++..+...      ..-+...+.++.-+.+    .+...+..++..|
T Consensus       125 ~~~~ea~~~lP~LveKlGd~---k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ks----KN~R~R~e~l~~l  191 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEA---KDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKS----KNARQRSECLLVI  191 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGC----SCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHcc----CCHHHHHHHHHHH
Confidence            01111 12689999999887   788998887777665421      1123356777777777    6899999999999


Q ss_pred             HHhcCCCccHHHHHhcCcH---HHHHHHcCCH--HHHHHHHHHHHHhc
Q 010064          289 YNLSIFPSNISFILETDLI---RYLLEMLGDM--ELSERILSILSNLV  331 (519)
Q Consensus       289 ~nLs~~~~n~~~l~~~g~v---~~Lv~lL~~~--~v~~~Al~~L~nLs  331 (519)
                      .++.......    ...++   +.+..+++|.  .++..|+.++..+-
T Consensus       192 ~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          192 EYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            8885432211    24478   9999999755  48999988887554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.20  E-value=1.7  Score=41.62  Aligned_cols=174  Identities=15%  Similarity=0.128  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHH
Q 010064          237 EAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK-VSPQAKQDALRALYNLSIFPS--NISFILETDLIRYLLEM  313 (519)
Q Consensus       237 ~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~-~~~~~~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~l  313 (519)
                      .+|.+.|-.++.+++.|..+.+....-.|...|...... .-...+..++..+..|...++  -+.+++++..||..+..
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            456666777899999999999998887888888763111 114588889999999986543  67888999999999999


Q ss_pred             c--CCHHHHHHHHHHHHHhcCCcccHHHHhhcC-------CcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 010064          314 L--GDMELSERILSILSNLVSTPEGRKAISRVP-------DAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAM  384 (519)
Q Consensus       314 L--~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~-------g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i  384 (519)
                      +  ++.--+.-|..++..+-.++.+-.-+..+.       .++..++..+....++.+-++.+.+-..|+.+ +..|+++
T Consensus       154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL  232 (268)
T 2fv2_A          154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREAL  232 (268)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHH
Confidence            9  455567788888888877777666655422       24445555454467889999999999999987 5666666


Q ss_pred             HH-------cCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          385 IE-------AGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       385 ~~-------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      .+       .|.+..+    ..+++..++--..++.++
T Consensus       233 ~~~LP~~Lrd~tf~~~----l~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          233 RQCLPDQLKDTTFAQV----LKDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHSCGGGTSSTTHHH----HTSCHHHHHHHHHHHHHS
T ss_pred             HHhCcHHhhChHHHHH----HhcCHHHHHHHHHHHHhc
Confidence            53       2322222    245777776555555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.63  E-value=2.3  Score=40.04  Aligned_cols=158  Identities=16%  Similarity=0.159  Sum_probs=104.5

Q ss_pred             CChHHHHHHhhcCC---C----CCCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064          260 GAVPFLVKTLKNSD---K----KVSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSN  329 (519)
Q Consensus       260 gai~~LV~lL~~~~---~----~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~n  329 (519)
                      +++..|+.+|....   .    ..+...+..++.+|..|..+......+++. .++..|...|.++  .++..++.+|.-
T Consensus        43 ~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~  122 (233)
T 2f31_A           43 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA  122 (233)
T ss_dssp             HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            45566666554310   0    125677888999999998877766667665 6888888888544  477788888988


Q ss_pred             hcCCcc--c-HHHHhh---------cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh------hHHHHHHcCcHH
Q 010064          330 LVSTPE--G-RKAISR---------VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG------DRQAMIEAGIAS  391 (519)
Q Consensus       330 Ls~~~e--~-r~~i~~---------~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~------~~~~i~~~G~i~  391 (519)
                      ++..++  + ...+.+         ...-+..+++.+....+.+.+..+...+..|...+++      .|..+...|..+
T Consensus       123 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~  202 (233)
T 2f31_A          123 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ  202 (233)
T ss_dssp             HHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH
T ss_pred             HHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH
Confidence            887543  5 443322         1334566778777445667777777777777776543      245566789888


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          392 ALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       392 ~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      .+-.+-...++....+...--....+
T Consensus       203 il~~l~~~~~~~L~~Qi~~fe~~~~e  228 (233)
T 2f31_A          203 VLQELREIENEDMKVQLCVFDEQGDE  228 (233)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHh
Confidence            88777777888877765554444333

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.49  E-value=5.5  Score=45.07  Aligned_cols=175  Identities=15%  Similarity=0.123  Sum_probs=105.6

Q ss_pred             CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHH
Q 010064          232 NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLL  311 (519)
Q Consensus       232 ~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv  311 (519)
                      +...++.++.++..++..-..    .....++.++..+... ....+.++..++++|..++..-......+ ..+++.|+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~l~  535 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPLVL  535 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHH
Confidence            677888888888888754221    0123455666655432 22478899999999999875322111222 37888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCcccHHHHhhc-CCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcC
Q 010064          312 EMLGDMELSERILSILSNLVSTPEGRKAISRV-PDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHKSY-GDRQAMIEAG  388 (519)
Q Consensus       312 ~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~~~-~~~~~i~~~G  388 (519)
                      ..|.++.++..|+.+|.+++.  +++..+... ...+..|..++... -+...+..+..+++.++...+ +.....+ ..
T Consensus       536 ~~l~~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~~  612 (963)
T 2x19_B          536 HALGNPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-HS  612 (963)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HH
T ss_pred             HHhCCchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-HH
Confidence            888888899999999999985  233333210 12444455555522 256788888889998876432 3333322 22


Q ss_pred             cHHHHHHHhh----c-CCHHHHHHHHHHHHHh
Q 010064          389 IASALLELTL----L-GSTLAQKRASRILECL  415 (519)
Q Consensus       389 ~i~~Ll~Ll~----~-gs~~~~~~A~~~L~~l  415 (519)
                      +++.+...+.    . .++..+.....++.+|
T Consensus       613 l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          613 LISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             HHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4444444332    2 2566666555555555

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=92.48  E-value=2.6  Score=40.44  Aligned_cols=184  Identities=9%  Similarity=0.039  Sum_probs=112.4

Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC---Chhhhh-h-CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          218 VHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS---NKPIIG-S-SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       218 v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~---~k~~I~-~-~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                      +| |-+-|.+.   +-..+..+.-.|..+.....   ...... . ...++.+...+..    .+..++..++.+|..++
T Consensus        12 lp-l~e~l~sk---~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D----sN~~v~~~al~~l~~~~   83 (278)
T 4ffb_C           12 LP-LEERLTYK---LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD----SNVVAQEQAIVALNSLI   83 (278)
T ss_dssp             CC-HHHHTTCS---SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC----SSHHHHHHHHHHHHHHH
T ss_pred             CC-HHHhcccC---cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHH
Confidence            44 55667777   77888888777665433211   111111 1 2345556667766    79999999999999887


Q ss_pred             CCCc----cH--HHHHhcCcHHHHHHH-cCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064          293 IFPS----NI--SFILETDLIRYLLEM-LGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ  363 (519)
Q Consensus       293 ~~~~----n~--~~l~~~g~v~~Lv~l-L~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q  363 (519)
                      ..-.    ..  ....-..+++.|+.- |++.  .++..++.+|..++........      ++..++..+. +.+|.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~-~Knpkv~  156 (278)
T 4ffb_C           84 DAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFE-KKLPKLI  156 (278)
T ss_dssp             TTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGG-CSCHHHH
T ss_pred             HHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHh-ccCHHHH
Confidence            5321    11  122234567777764 6554  4777888777766542211111      2345666777 6799999


Q ss_pred             HHHHHHHHHHhcC--Chh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          364 EKASYVLMVMAHK--SYG-DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       364 e~A~~~L~nL~~~--~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..++..|..+...  ... .....+ ..+++.+..++.+.++.+|..|..++.-+-.
T Consensus       157 ~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          157 AAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            9988888776542  111 111111 1345567788899999999999999887764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.33  E-value=0.14  Score=48.98  Aligned_cols=45  Identities=18%  Similarity=-0.019  Sum_probs=30.1

Q ss_pred             hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      +.|..++. ..++.++..++..+.                  .+.|..| .+.+..++..|...|
T Consensus       197 ~~L~~Ll~-D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLH-DPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGG-CSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHHc-CCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            45666676 567777777666531                  3556666 888888888876554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=91.87  E-value=3.3  Score=40.79  Aligned_cols=158  Identities=16%  Similarity=0.110  Sum_probs=97.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH----HhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA----GMLDF-QLADSQISSLYALLNLGIGNDLN  208 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv----~lL~s-~~~~~~~~a~~aL~NLa~~~~~n  208 (519)
                      +..+.+.+ .=..+.+.-++..+|-+.. ++.....+...+.-..++    ..+.. ..+..+..+++++.|+... +..
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g  181 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG  181 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence            34444444 2223345556677776664 445555555433323333    33432 4567799999999999994 878


Q ss_pred             HHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC---CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHH
Q 010064          209 KAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD---SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQD  283 (519)
Q Consensus       209 k~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~---~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~  283 (519)
                      +..+...  -+++.+...+.++   +..++.+++..++|++...   ...+.  ....+..+..++...   .+.++..-
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~---nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~---~d~EalyR  253 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGS---NKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVV---QDLEATFR  253 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhcc---CCHHHHHH
Confidence            8777753  3555666565555   7899999999999988531   11111  112445555666553   68899999


Q ss_pred             HHHHHHHhcCCCccHHHHH
Q 010064          284 ALRALYNLSIFPSNISFIL  302 (519)
Q Consensus       284 A~~aL~nLs~~~~n~~~l~  302 (519)
                      ++.||.+|...+.....+.
T Consensus       254 ~LvALGtL~~~~~~~~~la  272 (304)
T 3ebb_A          254 LLVALGTLISDDSNAVQLA  272 (304)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCChhHHHHH
Confidence            9999999987654444333

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=91.22  E-value=3.4  Score=41.34  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=88.6

Q ss_pred             HHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCC
Q 010064          196 YALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKK  275 (519)
Q Consensus       196 ~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~  275 (519)
                      --|.||..++...-.-+++..+|..+..++..+   +.++..+....|+..|...... .+--...+|++++.+.-.   
T Consensus       264 FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h---  336 (619)
T 3c2g_A          264 FDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIH---  336 (619)
T ss_dssp             HHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHC---
T ss_pred             HHHHHHHhcccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccC---
Confidence            347788887566677899999999999999998   8999998888888887543211 111256799999999864   


Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHH-HHhcCcHHHHHHHc
Q 010064          276 VSPQAKQDALRALYNLSIFPSNISF-ILETDLIRYLLEML  314 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~n~~~-l~~~g~v~~Lv~lL  314 (519)
                      ++.++.-.....|.|...+...... -+..|+++-|...+
T Consensus       337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I  376 (619)
T 3c2g_A          337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTII  376 (619)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHH
Confidence            8999999999999999988875444 46789999998877

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.13  E-value=9.1  Score=43.39  Aligned_cols=257  Identities=11%  Similarity=0.024  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHh--cCcHHHH
Q 010064          144 ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVK--AGAVHKM  221 (519)
Q Consensus       144 ~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~--aG~v~~L  221 (519)
                      .++.++..++++|..++.--......+  ..+++.|+..|+   +.++..|++++.+++..   .+..+..  ..++..|
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~---~~~~l~p~~~~ll~~l  589 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD---CQLQLKPYADPLLNAC  589 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH---HHHhccccHHHHHHHH
Confidence            377889999999998774321111222  125667777773   67899999999999954   3333432  2466777


Q ss_pred             HHhhcCCCCCCHHHHHHHHHHHHHhccC-C-CChhhhhhCCChHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhcCC---
Q 010064          222 LKLIESPVAPNPSVSEAIVANFLGLSAL-D-SNKPIIGSSGAVPFLVKTLKNSDKKV--SPQAKQDALRALYNLSIF---  294 (519)
Q Consensus       222 v~lL~s~~~~~~~~~~~a~~aL~~LS~~-~-~~k~~I~~~gai~~LV~lL~~~~~~~--~~~~~~~A~~aL~nLs~~---  294 (519)
                      ..++..+.. +...+..+..++..+... + +.+.... ...+++++..|.......  +.+.+.....+|..|+..   
T Consensus       590 ~~~l~~~~~-~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~  667 (971)
T 2x1g_F          590 HASLNTGRM-KNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS  667 (971)
T ss_dssp             HHHHHSTTS-CHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCC-ChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence            777776421 466777666666665432 1 2222221 223455554443210001  333344444444444311   


Q ss_pred             --C---cc--------HHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHHhcCC-cccHHHHhhcCCcchhhhhhccC
Q 010064          295 --P---SN--------ISFILETDLIRYLLEML----GDMELSERILSILSNLVST-PEGRKAISRVPDAFPILVDVLNW  356 (519)
Q Consensus       295 --~---~n--------~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~nLs~~-~e~r~~i~~~~g~i~~Lv~lL~~  356 (519)
                        .   ++        ...-+...+++.+..++    .+.++.+.++.+++.++.. .+.-..+..  ..++.|+..+..
T Consensus       668 l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~  745 (971)
T 2x1g_F          668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQT  745 (971)
T ss_dssp             HTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC-
T ss_pred             cCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhc
Confidence              0   00        00112235666666655    3567999999999998752 111111111  233444444442


Q ss_pred             CCCHHHHHHHHHHHHHHhcC--Ch-hhHHHHHH--cCcHHHHHHHhhc-------CCHHHHHHHHHHHHHhh
Q 010064          357 TDSPGCQEKASYVLMVMAHK--SY-GDRQAMIE--AGIASALLELTLL-------GSTLAQKRASRILECLR  416 (519)
Q Consensus       357 s~~~~~qe~A~~~L~nL~~~--~~-~~~~~i~~--~G~i~~Ll~Ll~~-------gs~~~~~~A~~~L~~l~  416 (519)
                      +..    ..+++++..++..  .. .....+.+  ...+...+.++..       ..|++++..-.++..+.
T Consensus       746 ~~~----~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l  813 (971)
T 2x1g_F          746 RCC----APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQII  813 (971)
T ss_dssp             -CC----HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCc----hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHH
Confidence            211    2366777777663  21 12222222  1223333444433       25667666655555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=90.79  E-value=5.1  Score=40.74  Aligned_cols=143  Identities=17%  Similarity=0.153  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcc--c-HHHHhh-------
Q 010064          276 VSPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGD--MELSERILSILSNLVSTPE--G-RKAISR-------  342 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e--~-r~~i~~-------  342 (519)
                      .+...+..++.||..|..+......++.. ..+..|...|.+  +.++..++.+|.-+|..++  + ...+.+       
T Consensus       132 ~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~  211 (383)
T 3eg5_B          132 YDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  211 (383)
T ss_dssp             -CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence            35678889999999998877766666665 788989888864  3578889999988888543  3 443332       


Q ss_pred             --cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh------HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 010064          343 --VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD------RQAMIEAGIASALLELTLLGSTLAQKRASRILEC  414 (519)
Q Consensus       343 --~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~------~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~  414 (519)
                        ...-+..+++.|....+.+.+..+...+..+...+++.      |..+...|..+.+-.+-...++....+...--..
T Consensus       212 ~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi~~fe~~  291 (383)
T 3eg5_B          212 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQ  291 (383)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHHHHHHHHHH
Confidence              13447778888884456777777777777777765432      4556678988887776666677666654444444


Q ss_pred             hhhc
Q 010064          415 LRVD  418 (519)
Q Consensus       415 l~~~  418 (519)
                      ..+|
T Consensus       292 ~~eD  295 (383)
T 3eg5_B          292 GDED  295 (383)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4333

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.03  E-value=9.4  Score=43.12  Aligned_cols=217  Identities=12%  Similarity=0.094  Sum_probs=121.9

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhh---cCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhhC
Q 010064          184 DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLI---ESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGSS  259 (519)
Q Consensus       184 ~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL---~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~~  259 (519)
                      .+.+...++.++++++.++.+.....     ...++.++..+   .++   ++.++..+++++...+.. ..... . -.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~---~~~vr~~~~~~l~~~~~~l~~~~~-~-l~  528 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS---NVQLADTVMFTIGALSEWLADHPV-M-IN  528 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC---SHHHHHHHHHHHHHTHHHHHHCHH-H-HT
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhCHH-H-HH
Confidence            45677889999999999997643311     12344444433   223   678898888888776632 11111 1 24


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHH--hcCcHHHHHHHcC----CHHHHHHHHHHHHHhcC-
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFIL--ETDLIRYLLEMLG----DMELSERILSILSNLVS-  332 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~--~~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~-  332 (519)
                      ..++.|+..|.      ++.++..|+.+|.+|+....  ..+.  -...+..|..++.    +.+.+..++.+++.++. 
T Consensus       529 ~vl~~l~~~l~------~~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~  600 (963)
T 2x19_B          529 SVLPLVLHALG------NPELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA  600 (963)
T ss_dssp             TTHHHHHHHTT------CGGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhC------CchHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence            67888887773      36789999999999985322  1111  0123344444443    34577777888888775 


Q ss_pred             Cc-ccHHHHhhcCCcchhhhhhc----cCCCCHHHHHH---HHHHHHHHhcC--C--h-h--------------h--HHH
Q 010064          333 TP-EGRKAISRVPDAFPILVDVL----NWTDSPGCQEK---ASYVLMVMAHK--S--Y-G--------------D--RQA  383 (519)
Q Consensus       333 ~~-e~r~~i~~~~g~i~~Lv~lL----~~s~~~~~qe~---A~~~L~nL~~~--~--~-~--------------~--~~~  383 (519)
                      .+ +......+  ..++.+.+.+    ....++..+..   ...+|+.+...  .  + .              .  --.
T Consensus       601 ~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (963)
T 2x19_B          601 LQVEEILKNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV  678 (963)
T ss_dssp             SCHHHHHHHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred             CCHHHHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence            32 44444443  2454454443    22224544443   33334444321  0  0 0              0  011


Q ss_pred             HHHcCcHHHHHHHhh--cCCHHHHHHHHHHHHHhhhcCC
Q 010064          384 MIEAGIASALLELTL--LGSTLAQKRASRILECLRVDKG  420 (519)
Q Consensus       384 i~~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l~~~~~  420 (519)
                      -....++|.+..++.  ..++.+.+.++.++..+...-+
T Consensus       679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~  717 (963)
T 2x19_B          679 VVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL  717 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence            123446677666665  3467888999999988775433

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.78  E-value=1.4  Score=50.85  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC-----CHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064          276 VSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG-----DME--LSERILSILSNLVSTPEGRKAISRVPDAF  347 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~-----~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i  347 (519)
                      .+-+.+..+++++..++.... ....-.-..+++.|+.++.     |+.  ++..++++|+..+..-........  ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence            578899999999999997754 2222222356677777774     233  445677888876652222222333  266


Q ss_pred             hhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHH----------cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          348 PILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIE----------AGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~----------~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..|++.|. .+++.+++.||+++.+||.   +++..+..          ..++..+...+..-.+.....+..++..+..
T Consensus       543 ~~L~~~l~-~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          543 LKLFEFMH-ETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHTT-CSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhh-cCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            66777776 4578999999999999995   34444432          1223333444444566667777777777775


Q ss_pred             c
Q 010064          418 D  418 (519)
Q Consensus       418 ~  418 (519)
                      .
T Consensus       619 ~  619 (1023)
T 4hat_C          619 E  619 (1023)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.74  E-value=6.6  Score=44.55  Aligned_cols=137  Identities=12%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCC-CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHH
Q 010064          232 NPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSD-KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYL  310 (519)
Q Consensus       232 ~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~-~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~L  310 (519)
                      +...+++++.++..++.......    ...++.++.++.... ....+.++..++++|..++..-......+ ..+++.|
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~l  551 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINLL  551 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHH
Confidence            45678888888888764322111    234566666553320 01378899999999998875321111100 1345556


Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCcccHHHHhhc-CCcchhhhhhccCC-CCHHHHHHHHHHHHHHhcC
Q 010064          311 LEMLGDMELSERILSILSNLVSTPEGRKAISRV-PDAFPILVDVLNWT-DSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       311 v~lL~~~~v~~~Al~~L~nLs~~~e~r~~i~~~-~g~i~~Lv~lL~~s-~~~~~qe~A~~~L~nL~~~  376 (519)
                      +..| ++.++..|+.+|.+|+.  +++..+... +..+..|.+++... -+...+..+..+++.++..
T Consensus       552 ~~~l-~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          552 VRGL-NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHH-HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHh-ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            6656 35689999999999994  344444321 23556666777632 2467888888888888764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.96  E-value=5.8  Score=40.33  Aligned_cols=142  Identities=17%  Similarity=0.161  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc--c-HHHHhh--------
Q 010064          277 SPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSNLVSTPE--G-RKAISR--------  342 (519)
Q Consensus       277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e--~-r~~i~~--------  342 (519)
                      +......++.||..|..+......++.. .++..|...|.++  .++..++.+|..+|..++  + ...+.+        
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            5678889999999998887766666665 7888888888543  477788888888887443  5 333321        


Q ss_pred             -cCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh------hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          343 -VPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG------DRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       343 -~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~------~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                       ...-+..|++.+..+.+.+.+..+...+..|...+++      .|..+...|..+.|-.+-...++....+...--...
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~  230 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQG  230 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHH
Confidence             1334566888787556677777777777777776553      255567789888877777677887776655444443


Q ss_pred             hhc
Q 010064          416 RVD  418 (519)
Q Consensus       416 ~~~  418 (519)
                      .+|
T Consensus       231 ~eD  233 (386)
T 2bnx_A          231 DED  233 (386)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=87.52  E-value=8.4  Score=38.25  Aligned_cols=197  Identities=15%  Similarity=0.093  Sum_probs=139.0

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH----HHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK----AAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGL  246 (519)
Q Consensus       172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk----~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L  246 (519)
                      ..+.+..|+..|..=+-+.+..++.+..++.......+    .-+.. ..++..|+.--..+     ++.-.+-..|...
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~-----diAl~~G~mLRec  150 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP-----EIALNCGIMLREC  150 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST-----TTHHHHHHHHHHH
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccc-----hhHhHHHHHHHHH
Confidence            44678889999988889999999999999887644322    12222 24555555555444     3333444455555


Q ss_pred             ccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHHHhc---CcHHHHHHHcCCHH--HH
Q 010064          247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFILET---DLIRYLLEMLGDME--LS  320 (519)
Q Consensus       247 S~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l~~~---g~v~~Lv~lL~~~~--v~  320 (519)
                      ..++.....|..++.+..+.+.+..    .+.++..+|..++.-|-.. ......++..   ..+...-.+|.++.  ++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcC----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            5565556666677778888888887    7999999999999988654 3344445544   35666677787776  77


Q ss_pred             HHHHHHHHHhcCCcccHHHHh---hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          321 ERILSILSNLVSTPEGRKAIS---RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       321 ~~Al~~L~nLs~~~e~r~~i~---~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                      ..++..|+.|-.+..+...+.   +...-+..++.+|. +.+..+|-+|..+.-...+.+.
T Consensus       227 RQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-CchhchhhhhhhheeeeeeCCC
Confidence            899999999998776666543   33566778888898 6789999999888877777644

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=86.44  E-value=7.3  Score=38.70  Aligned_cols=192  Identities=15%  Similarity=0.147  Sum_probs=131.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhH----HHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCChhh
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETR----VTLAMLGAIPPLAGMLDF-QLADSQISSLYALLNLGIGNDLN  208 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r----~~l~~~G~i~~Lv~lL~s-~~~~~~~~a~~aL~NLa~~~~~n  208 (519)
                      +..|+..|..=+.+.|..++....++.+.....+    ..+..  --+.|..+++. +++++-..+-..|+.+..+ +..
T Consensus        80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRecir~-e~l  156 (341)
T 1upk_A           80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRECIRH-EPL  156 (341)
T ss_dssp             HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-HHH
T ss_pred             HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHHHHh-HHH
Confidence            6777777777788888888888888877653322    22222  12223233332 4455556677778887774 888


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC-CCChhhhhh---CCChHHHHHHhhcCCCCCCHHHHHHH
Q 010064          209 KAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL-DSNKPIIGS---SGAVPFLVKTLKNSDKKVSPQAKQDA  284 (519)
Q Consensus       209 k~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~-~~~k~~I~~---~gai~~LV~lL~~~~~~~~~~~~~~A  284 (519)
                      ...++..+.+-.+.+.++.+   +=++...|..++..|-.. ......+..   .-.....-++|.+    ++.-+++++
T Consensus       157 a~~iL~~~~f~~fF~yv~~~---~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S----~NYVTkRQS  229 (341)
T 1upk_A          157 AKIILWSEQFYDFFRYVEMS---TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS----ENYVTKRQS  229 (341)
T ss_dssp             HHHHHHSGGGGHHHHHTTCS---SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC----SSHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHhcCC---CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC----CcchhHHHH
Confidence            88888888899999999998   889998888888776433 111111111   2345556677777    799999999


Q ss_pred             HHHHHHhcCCCccHHHHH----hcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcc
Q 010064          285 LRALYNLSIFPSNISFIL----ETDLIRYLLEMLGDM--ELSERILSILSNLVSTPE  335 (519)
Q Consensus       285 ~~aL~nLs~~~~n~~~l~----~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e  335 (519)
                      +..|..|..+..|...+.    +..-+..++.+|.|.  .++.+|..+..--+++|.
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            999999998877655543    335677778888654  589999988877666554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=85.19  E-value=3.2  Score=44.30  Aligned_cols=181  Identities=19%  Similarity=0.218  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhc
Q 010064          147 EQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIE  226 (519)
Q Consensus       147 ~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~  226 (519)
                      .+|+.|+.+|..+ ..-+.-      ..++..|+..+..+.-+++..++-.|..+ .  +--..   -.++++.++.-|+
T Consensus       243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~~---Ld~Vv~aVL~GL~  309 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVED---KDGLCRKLVSLLS  309 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCCC---HHHHHHHHHHHTT
T ss_pred             ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHHH---HHHHHHHHHhhcC
Confidence            5777777777777 443221      34555666666778899999999999998 1  11111   2467888888899


Q ss_pred             CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHH----hhcC-CCCCCHHHHHHHHHHHHHhcCCCccHHHH
Q 010064          227 SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKT----LKNS-DKKVSPQAKQDALRALYNLSIFPSNISFI  301 (519)
Q Consensus       227 s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~l----L~~~-~~~~~~~~~~~A~~aL~nLs~~~~n~~~l  301 (519)
                      +.   +.+++..|+.+|.-++ .         ...++.|+.+    |.+. +-+.+.....+.+.+|+..-.....    
T Consensus       310 D~---DDDVRAVAAetLiPIA-~---------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~----  372 (800)
T 3oc3_A          310 SP---DEDIKLLSAELLCHFP-I---------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI----  372 (800)
T ss_dssp             CS---SHHHHHHHHHHHTTSC-C---------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC----
T ss_pred             Cc---ccHHHHHHHHHhhhhc-c---------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc----
Confidence            88   8999999999998887 2         2334444443    3332 1123444555555555555421111    


Q ss_pred             HhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh-hccCCCCHHHHHHHHHHH
Q 010064          302 LETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVD-VLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       302 ~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~-lL~~s~~~~~qe~A~~~L  370 (519)
                       ....||.|...|..  ..++..++.+|..+.          . ..++..+.+ +|- ..++++++.+..+.
T Consensus       373 -dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----------~-~~~LRLIFQNILL-E~neeIl~lS~~VW  431 (800)
T 3oc3_A          373 -PPERLKDIFPCFTSPVPEVRTSILNMVKNLS----------E-ESIDFLVAEVVLI-EEKDEIREMAIKLL  431 (800)
T ss_dssp             -CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----------C-HHHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred             -ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----------h-hhHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence             12677777777754  569999999987776          1 223444444 333 45788887776555

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=83.60  E-value=31  Score=39.47  Aligned_cols=98  Identities=15%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHhcCCCccH-HHHHhcCcHHHHHHHcC-----CHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcc
Q 010064          276 VSPQAKQDALRALYNLSIFPSNI-SFILETDLIRYLLEMLG-----DME--LSERILSILSNLVSTPEGRKAISRVPDAF  347 (519)
Q Consensus       276 ~~~~~~~~A~~aL~nLs~~~~n~-~~l~~~g~v~~Lv~lL~-----~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i  347 (519)
                      .+...+..+++++..++...... ..-.-..+++.|+.+..     ++.  ++..++++++..+..-........  .++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHH
Confidence            57788999999999998643211 11111224444544432     122  344588888877652111123333  367


Q ss_pred             hhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          348 PILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       348 ~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      +.|++.|. +.++.++..|++++.++|..
T Consensus       543 ~~ll~~l~-~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          543 LKLFEFMH-ETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHTT-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence            77888887 56899999999999999963

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=83.41  E-value=25  Score=40.61  Aligned_cols=219  Identities=16%  Similarity=0.073  Sum_probs=135.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC----Ch
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGIG----ND  206 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~~----~~  206 (519)
                      ..+..++..+.+++.+.|..|-..|..+-+ +++..         ..+..+|. +.++.++.-|+.+|.+....    -+
T Consensus        28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw---------~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~   97 (1073)
T 3gjx_A           28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW---------TRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP   97 (1073)
T ss_dssp             HHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH---------HHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            347788888888888888888888876653 33433         23334443 46889999999999998752    12


Q ss_pred             hhHHHHHhcCcHHHHHHhhcCCC--CCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHH
Q 010064          207 LNKAAIVKAGAVHKMLKLIESPV--APNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQ  282 (519)
Q Consensus       207 ~nk~~iv~aG~v~~Lv~lL~s~~--~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~  282 (519)
                      .....-++..++..+.....++.  ..++.+....+.++..+...  ++.     ....++.|+.++..     +.....
T Consensus        98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~-----~~~~~~  167 (1073)
T 3gjx_A           98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT-----SESLCQ  167 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH-----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC-----CHHHHH
Confidence            33334445557777776543320  00345555555555555432  222     35578888888865     455666


Q ss_pred             HHHHHHHHhcCC--C-------ccH----HHHHhcCcHHHHHHHc-------CCHHHHHHHHHHHHHhcCCcccHHHHhh
Q 010064          283 DALRALYNLSIF--P-------SNI----SFILETDLIRYLLEML-------GDMELSERILSILSNLVSTPEGRKAISR  342 (519)
Q Consensus       283 ~A~~aL~nLs~~--~-------~n~----~~l~~~g~v~~Lv~lL-------~~~~v~~~Al~~L~nLs~~~e~r~~i~~  342 (519)
                      ..+..|..|+..  .       ..+    ...+.. -++.++.++       .++++...++.+|....+.-+ -..++.
T Consensus       168 ~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~  245 (1073)
T 3gjx_A          168 NNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFE  245 (1073)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHS
T ss_pred             HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhcc
Confidence            777888777643  1       011    111212 144444443       355688889999999988543 234556


Q ss_pred             cCCcchhh-hhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          343 VPDAFPIL-VDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       343 ~~g~i~~L-v~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                       ...++.| ..+|.   ++..+..|+.+|+.+...
T Consensus       246 -~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          246 -TKLISTLIYKFLN---VPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             -SSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHS
T ss_pred             -chHHHHHHHHhcC---ChHHHHHHHHHHHHHHhc
Confidence             5777777 46665   588999999999998864

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=82.95  E-value=12  Score=38.92  Aligned_cols=129  Identities=13%  Similarity=0.180  Sum_probs=88.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +..++.. ..++...|..|+..|....+.-++..+.     ++..++.+++.++..+|..|.+.|-.+|.+  ++-..  
T Consensus        31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k--  100 (507)
T 3u0r_A           31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR--  100 (507)
T ss_dssp             HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH--
T ss_pred             HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh--
Confidence            4445553 4568999999999999999888887775     578999999999999999999999999995  43222  


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                         ++..|+++|+..   ++.-...+-.+|..|-..++       .+.+..|..-+..    ++..++..++..|+
T Consensus       101 ---iaDvL~QlLqtd---d~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~----~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          101 ---VADILTQLLQTD---DSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQ----GEDIVRERAIKFLS  159 (507)
T ss_dssp             ---HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHH----SCHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHhcc---chHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcc----cchHHHHHHHHHHH
Confidence               568899999987   55555555455555433221       2233344443333    34566666665553

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=81.98  E-value=25  Score=34.38  Aligned_cols=151  Identities=9%  Similarity=0.037  Sum_probs=96.2

Q ss_pred             HHHHHHHhcCC------CHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 010064          134 LKIVVKDLQSE------SEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDFQLADSQISSLYALLNLGIGN  205 (519)
Q Consensus       134 l~~Lv~~L~s~------~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~  205 (519)
                      +..+..+++++      +.+.-..|+..|-.++ +|-.+-..++.  -..+..|+ +.....+.+++.++++|.....+|
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElS-HDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFA-HDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGT-TSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhh-hhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            33444445554      3344567888888888 45566666664  23344444 334567789999999999999999


Q ss_pred             hhhHHHHHhc--CcHHHHHHhhc----CCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHH
Q 010064          206 DLNKAAIVKA--GAVHKMLKLIE----SPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQ  279 (519)
Q Consensus       206 ~~nk~~iv~a--G~v~~Lv~lL~----s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~  279 (519)
                      ++....|.+.  ..+..++.-|.    .+......+...-+++|-.|..++.   .+ ....+..|++++...  ..+.+
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~--~~d~~  175 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERN--NKDKQ  175 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHT--TTCHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccC--CCCHH
Confidence            9988877764  45555554332    2211134566677888888887752   12 244668888887651  23888


Q ss_pred             HHHHHHHHHHHhc
Q 010064          280 AKQDALRALYNLS  292 (519)
Q Consensus       280 ~~~~A~~aL~nLs  292 (519)
                      ++..++..+..+-
T Consensus       176 ~k~Kvl~li~d~f  188 (315)
T 3qml_C          176 LQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888776554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=81.88  E-value=35  Score=39.01  Aligned_cols=271  Identities=11%  Similarity=0.040  Sum_probs=144.8

Q ss_pred             HHHHHHHHhcCC---CHHHHHHHHHHHHHHhcc-Chh----hHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHhcC
Q 010064          133 ELKIVVKDLQSE---SEEQRREAASKVRSLAKE-NSE----TRVTLAMLGAIPPLAGMLD-FQLADSQISSLYALLNLGI  203 (519)
Q Consensus       133 ~l~~Lv~~L~s~---~~~~~~~Aa~~L~~La~~-~~~----~r~~l~~~G~i~~Lv~lL~-s~~~~~~~~a~~aL~NLa~  203 (519)
                      ........|...   +...|.-|+..|.+..+. +++    .+..+. .-++..+...-. .+..-++...+.+|..++.
T Consensus        41 aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~  119 (980)
T 3ibv_A           41 GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFL  119 (980)
T ss_dssp             HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            355566666543   678899999988875542 223    343332 223333333110 1345677777777777775


Q ss_pred             CC-hhhHHHHHhcCcHHHHHHhhcCCCCCCH-HHHHHHHHHHHHhcc---CCC-C------------hhhhhhCC---Ch
Q 010064          204 GN-DLNKAAIVKAGAVHKMLKLIESPVAPNP-SVSEAIVANFLGLSA---LDS-N------------KPIIGSSG---AV  262 (519)
Q Consensus       204 ~~-~~nk~~iv~aG~v~~Lv~lL~s~~~~~~-~~~~~a~~aL~~LS~---~~~-~------------k~~I~~~g---ai  262 (519)
                      .. +..     =.+.++-|+.++.++   +. ........+|..++.   +.. .            |..+.+..   .+
T Consensus       120 ~~~p~~-----Wp~~i~~l~~~~~~~---~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~  191 (980)
T 3ibv_A          120 QLYPSN-----WNDFFASLQGVIAAS---SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIV  191 (980)
T ss_dssp             HHTTTT-----CTTHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HhCccc-----CchHHHHHHHHhcCC---ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHH
Confidence            31 011     024677777777654   23 233344444442221   100 0            22222210   13


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcC---CcccHHH
Q 010064          263 PFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSNLVS---TPEGRKA  339 (519)
Q Consensus       263 ~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~---~~e~r~~  339 (519)
                      +....+|.......++.++..++.+|......-+ ...+++...++.+..+|.+++++..|+.+|..+..   .++.+..
T Consensus       192 ~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~  270 (980)
T 3ibv_A          192 SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLN  270 (980)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHH
Confidence            3333334220001477888899999988876533 34556678899999999999999999999999887   4445555


Q ss_pred             HhhcCCcchhhhhhccC-CCCHHHHHHHHHHHHHHhc-------CC----hhhHHHHHH--cCcHHHHHHHhhcCCHHHH
Q 010064          340 ISRVPDAFPILVDVLNW-TDSPGCQEKASYVLMVMAH-------KS----YGDRQAMIE--AGIASALLELTLLGSTLAQ  405 (519)
Q Consensus       340 i~~~~g~i~~Lv~lL~~-s~~~~~qe~A~~~L~nL~~-------~~----~~~~~~i~~--~G~i~~Ll~Ll~~gs~~~~  405 (519)
                      ++..- .+..++..+.. .++.+..+.-+.++..++.       .+    .+.+.....  .+.++.++..+.+++..+-
T Consensus       271 li~~l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs  349 (980)
T 3ibv_A          271 LLNIL-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETS  349 (980)
T ss_dssp             HHHHH-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred             HHHHH-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHH
Confidence            54421 11112222221 3456655544444433321       11    111222211  3688999999988887776


Q ss_pred             HHHHHHHHH
Q 010064          406 KRASRILEC  414 (519)
Q Consensus       406 ~~A~~~L~~  414 (519)
                      ..+...+..
T Consensus       350 ~~t~~Fw~~  358 (980)
T 3ibv_A          350 TAVFPFLSD  358 (980)
T ss_dssp             HTTHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655444443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=80.95  E-value=21  Score=41.19  Aligned_cols=171  Identities=9%  Similarity=0.037  Sum_probs=93.8

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHhcC----CChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          176 IPPLAGMLDF----QLADSQISSLYALLNLGI----GNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS  247 (519)
Q Consensus       176 i~~Lv~lL~s----~~~~~~~~a~~aL~NLa~----~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS  247 (519)
                      +..+..++.+    .++.++..+..++.+|..    .++.+...++. -+...|.+.+...   +..-...++.+|-|+.
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~---~~~~~~~~LkaLGN~g  468 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRA---KEEEIVLALKALGNAG  468 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcC---ChHHHHHHHHHhhccC
Confidence            3445555554    456666667776666653    11111111110 0223333444555   5555666677777775


Q ss_pred             cCCCChhhhhhCCChHHHHHHhhcC---CCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHH
Q 010064          248 ALDSNKPIIGSSGAVPFLVKTLKNS---DKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELS  320 (519)
Q Consensus       248 ~~~~~k~~I~~~gai~~LV~lL~~~---~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~  320 (519)
                      ..          ..++.|..++...   .......++..|++||.+++.....   .    +-+.|+.+.    .+++++
T Consensus       469 ~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~---~----v~~il~~i~~n~~e~~EvR  531 (1056)
T 1lsh_A          469 QP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR---K----VQEIVLPIFLNVAIKSELR  531 (1056)
T ss_dssp             CG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH---H----HHHHHHHHHHCTTSCHHHH
T ss_pred             Ch----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH---H----HHHHHHHHhcCCCCChHHH
Confidence            31          2466676666421   0123567888999999999854321   1    112344444    356688


Q ss_pred             HHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          321 ERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       321 ~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      ..|+.+|..  ..|.        ...+..+...+.+..+.++.......|-+|+...
T Consensus       532 iaA~~~Lm~--t~P~--------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          532 IRSCIVFFE--SKPS--------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHH--TCCC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHH--HCcC--------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            777777753  2221        1244466677775567777777777777877754

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=80.38  E-value=52  Score=33.17  Aligned_cols=153  Identities=13%  Similarity=0.137  Sum_probs=95.8

Q ss_pred             HHHHHhcCCCHHHH-HHHHHHHHH-HhccChhhHHHHHhcCCHHHHHHhhcC-----------CCHHHHHHHHHHHHHhc
Q 010064          136 IVVKDLQSESEEQR-REAASKVRS-LAKENSETRVTLAMLGAIPPLAGMLDF-----------QLADSQISSLYALLNLG  202 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~-~~Aa~~L~~-La~~~~~~r~~l~~~G~i~~Lv~lL~s-----------~~~~~~~~a~~aL~NLa  202 (519)
                      ..++.|.++....+ ...+..|+. |......--..|. .+|+..|+.+|..           .+...+..++++|..|.
T Consensus        70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm  148 (383)
T 3eg5_B           70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM  148 (383)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence            45565655533322 334555655 3333333434555 6788999988842           24578888999999998


Q ss_pred             CCChhhHHHHHhc-CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--C-hhhhh----------hCCChHHHHHH
Q 010064          203 IGNDLNKAAIVKA-GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--N-KPIIG----------SSGAVPFLVKT  268 (519)
Q Consensus       203 ~~~~~nk~~iv~a-G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~-k~~I~----------~~gai~~LV~l  268 (519)
                      . +......+++. ..+..|+..+.++   ++.++..++-.|..++..++  + ...+.          +..-...+|..
T Consensus       149 N-~~~G~~~vl~~~~~i~~l~~~L~s~---~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~  224 (383)
T 3eg5_B          149 N-NKFGIKTMLETEEGILLLVRAMDPA---VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG  224 (383)
T ss_dssp             S-SHHHHHHHHTCSSHHHHHHHTCCTT---SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred             c-chhhHHHHHcChHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            7 47677777764 7899999999888   88888888777766665543  3 33322          23445667777


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhcCCCc
Q 010064          269 LKNSDKKVSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       269 L~~~~~~~~~~~~~~A~~aL~nLs~~~~  296 (519)
                      |.+.   .+.+.+..++..+-.|...++
T Consensus       225 L~~~---~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          225 LKSG---TSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TSTT---SCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHcc---CcHHHHHHHHHHHHHHHcCCC
Confidence            7653   566666655555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	519
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	6e-11
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-10
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	4e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	9e-08

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 6e-15
 Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 14/193 (7%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           +   V+ L S+ E+ +   A  ++    ++   +  +  LG I  L  +L     + Q +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253
           +  AL NL   +  NK    +   + + + L+      N  + + +      LS+ D  K
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT--GNAEIQKQLTGLLWNLSSTDELK 121

Query: 254 PIIGSSGAVPFLVKTLKN-----------SDKKVSPQAKQDALRALYNLSIFPSN-ISFI 301
             + +        + +             S + V P+   +A   L NLS   +   +  
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 302 LETDLIRYLLEML 314
             + LI  L+  +
Sbjct: 182 NYSGLIDSLMAYV 194

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 36/261 (13%), Positives = 76/261 (29%), Gaps = 16/261 (6%)

Query: 122 SEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG 181
           + +       + ++  +  L + S     E  ++ R L           +  G     + 
Sbjct: 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255

Query: 182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVA 241
            +     D         L     N      +  + A+   L L+          + A   
Sbjct: 256 KMMNNNYD-------CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308

Query: 242 NFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFI 301
             L  S    +  +    G     +  +    +  +    +     L N+S  P     +
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM 368

Query: 302 LET---DLIRYLLEMLGDMELSERI----LSILSNLVST-PEGRKAISRVPDAFPILVDV 353
                 ++ R L    G+   SE I       + NL+++ P+  K           ++++
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS-SMLNNIINL 427

Query: 354 LNWTDSPGCQEKASYVLMVMA 374
              + SP   E A  +L  M 
Sbjct: 428 CRSSASPKAAEAARLLLSDMW 448

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 2e-11
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 258 SSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFIL-ETDLIRYLLEML-- 314
           ++ A+P L K L + D+ V       A   ++ LS   ++   I+    ++  ++  +  
Sbjct: 15  ATRAIPELTKLLNDEDQVV----VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 315 -GDMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVM 373
             D+E +      L NL    EG  AI +     P LV +L           A   L  +
Sbjct: 71  TNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPV-DSVLFYAITTLHNL 128

Query: 374 AHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR 416
                G + A+  AG    ++ L    +       +  L+ L 
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 8e-11
 Identities = 33/199 (16%), Positives = 56/199 (28%), Gaps = 29/199 (14%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQIS 193
           L +VVK L   S     +A   +             L   GAIP L  +L     D+Q  
Sbjct: 357 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 416

Query: 194 SLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK 253
           +            +    IV                       E        L+    N+
Sbjct: 417 TSMGGTQQQFVEGVRMEEIV-----------------------EGCTGALHILARDVHNR 453

Query: 254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEM 313
            +I     +P  V+ L +         ++ A   L  L+        I        L E+
Sbjct: 454 IVIRGLNTIPLFVQLLYSPI----ENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509

Query: 314 L--GDMELSERILSILSNL 330
           L   +  ++    ++L  +
Sbjct: 510 LHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-09
 Identities = 35/204 (17%), Positives = 67/204 (32%), Gaps = 9/204 (4%)

Query: 128 EEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQL 187
             A+ EL    K L  E +    +AA  V  L+K+ +     +     +  +   +    
Sbjct: 16  TRAIPEL---TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 188 -ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSE-AIVANFLG 245
             ++   +   L NL    +    AI K+G +  ++K++ S   P  SV   AI      
Sbjct: 73  DVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNL 128

Query: 246 LSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETD 305
           L   +  K  +  +G +  +V  L  ++ K             Y        I       
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 306 LIRYLLEMLGDMELSERILSILSN 329
            +  ++      +L      +L  
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKV 212

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (149), Expect = 6e-11
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 11/202 (5%)

Query: 119 EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLA-KENSETRVTLAMLGAIP 177
           +  S       ++E++   VK + S + E + +A    R L  +E       +   G IP
Sbjct: 3   DIGSNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

Query: 178 PLAGML-DFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVS 236
                L     +  Q  S +AL N+  G      A+V  GA+   + L+ S   P+  +S
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---PHAHIS 116

Query: 237 EAIVANFLGLSALDSNKP-IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP 295
           E  V     ++   S    ++   GA+  L+  L   D               + LS   
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN--LTWTLSNLC 174

Query: 296 SNISFILETDLIRYLLEMLGDM 317
            N +     D +  +L  L  +
Sbjct: 175 RNKNPAPPLDAVEQILPTLVRL 196

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 45/327 (13%), Positives = 101/327 (30%), Gaps = 45/327 (13%)

Query: 134 LKIVVKDLQ-SESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           +   V  L  ++    + E+A  + ++A   SE    +   GAIP    +L    A    
Sbjct: 58  IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117

Query: 193 SSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN 252
            +++AL N+       +  ++K GA+  +L L+  P     +        +   +   + 
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177

Query: 253 ---KPIIGSSGAVPFLVKTLKNSDKKVSPQA----------------------------- 280
               P+      +P LV+ L ++D +V   +                             
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237

Query: 281 ----------KQDALRALYNLSIFPSNISFILETDLIRYLLEML--GDMELSERILSILS 328
                               ++        +++   +     +L      + +     +S
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297

Query: 329 NLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAG 388
           N+ +  + +          P LV VL+  D    +E A  +    +  +      ++  G
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357

Query: 389 IASALLELTLLGSTLAQKRASRILECL 415
           I   L+ L     T   +     +  +
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNI 384

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 134 LKIVVKDLQSESEEQRREAASKVRSLA-KENSETRVTLAMLGAIPPLAGMLDFQLADSQI 192
           +  +V  L     + ++EAA  + +       E  V L   G I PL  +L  +      
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375

Query: 193 SSLYALLNL------GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEA 238
             L A+ N+          +     I + G + K+  L       N SV +A
Sbjct: 376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH---ENESVYKA 424

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 50/328 (15%), Positives = 108/328 (32%), Gaps = 10/328 (3%)

Query: 92  KPEKQKEAKGCVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRRE 151
           K ++    +          D     E   +++ +   +  +EL  + + L S+  +++  
Sbjct: 36  KRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLS 95

Query: 152 AASKVRS-LAKENSETRVTLAMLGAIPPLAGM-LDFQLADSQISSLYALLNLGIGNDLNK 209
           A  K R  L++E+      +   G +P L     + Q    Q+ + +AL N+  G     
Sbjct: 96  ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155

Query: 210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTL 269
             +V A AV   ++L+ +        +   + N  G S     +  +    A+  ++   
Sbjct: 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS--TDYRDYVLQCNAMEPILGLF 213

Query: 270 KNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDMELSERILSILSN 329
            ++   +     + A   L NL                   L  L     +E ++     
Sbjct: 214 NSNKPSL----IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA 269

Query: 330 LVSTPEGRKAISRVPDAFPILVDVLNWTDS--PGCQEKASYVLMVMAHKSYGDRQAMIEA 387
           +    +G +   +      I   ++          Q  A   +  +   +    Q +I A
Sbjct: 270 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINA 329

Query: 388 GIASALLELTLLGSTLAQKRASRILECL 415
           G+  AL  L        +K A   +  +
Sbjct: 330 GVLPALRLLLSSPKENIKKEACWTISNI 357

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 48/277 (17%), Positives = 99/277 (35%), Gaps = 10/277 (3%)

Query: 142 QSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNL 201
           +++ E  + EAA  + ++A   S     +    A+P    +L     + +  +++AL N+
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 202 GIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA 261
              +   +  +++  A+  +L L  S     PS+          L      +P       
Sbjct: 190 AGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDW---SV 243

Query: 262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML---GDME 318
           V   + TL      +  +   DA  A+  LS  P      +    I   L  L       
Sbjct: 244 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 303

Query: 319 LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY 378
           +    L  + N+V+  + +  +       P L  +L+       +E    +  + A  + 
Sbjct: 304 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NT 362

Query: 379 GDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL 415
              QA+I+A +   L++L  +     +K A   +   
Sbjct: 363 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 399

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 9e-08
 Identities = 34/241 (14%), Positives = 82/241 (34%), Gaps = 14/241 (5%)

Query: 123 EIKKKEEALEELK-----IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIP 177
           E+++ +  L  L         +  Q+  +++R  A   +  L  EN +       L  + 
Sbjct: 3   EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMH 61

Query: 178 PLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVS 236
            L G  L+   A  +  +   +          +  ++  GA+ K+L+L++       +V 
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD--ACDTVR 119

Query: 237 EAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS 296
              +     L      +  +     +      ++   ++V     + A      L   P 
Sbjct: 120 VKALFAISCLVR--EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 177

Query: 297 NISFILETDLIRYLLEML--GDMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDV 353
           +   +    +++ L+ ++        E +L  L +LV+  P+G +           L+  
Sbjct: 178 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH 237

Query: 354 L 354
            
Sbjct: 238 R 238

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	519
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.95
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.78
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.73
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.58
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.54
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.53
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.46
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.42
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.41
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.3
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.15
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.11
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.0
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.91
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.75
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.73
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.65
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.6
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.5
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.28
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.26
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.16
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.75
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.16
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	90.43
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	89.98
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	87.21
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	87.12
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	87.09
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	86.75

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6e-26  Score=240.30  Aligned_cols=302  Identities=17%  Similarity=0.203  Sum_probs=261.2

Q ss_pred             HHHHHHHHHccc--CChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          105 KSEKLLDLLNLA--EGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       105 ~~~~l~aLl~ls--~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      +..++..+.++.  ......+.+.+.|+   ++.|++.|+. .+...+..|+++|.+|+..++.....+...|+++.|+.
T Consensus        93 ~~~a~~~~r~~ls~~~~~~i~~ii~~g~---i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~  169 (503)
T d1wa5b_          93 QLSATVKFRQILSREHRPPIDVVIQAGV---VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQ  169 (503)
T ss_dssp             HHHHHHHHHHHTCCSSSCSHHHHHHTTC---HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHCCC---hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence            345555555542  22333455667888   9999999975 46779999999999999888888888999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSSG  260 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~g  260 (519)
                      +|.+++.+++..++++|+||+..++.++..+++.|+++.|+.++.+.   +..+...++++|.+++..... .......+
T Consensus       170 lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~---~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~  246 (503)
T d1wa5b_         170 LLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTLSNLCRGKKPQPDWSVVSQ  246 (503)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred             HhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC---CHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence            99999999999999999999998899999999999999999999988   889999999999999876544 33334578


Q ss_pred             ChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCC-ccc
Q 010064          261 AVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVST-PEG  336 (519)
Q Consensus       261 ai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~-~e~  336 (519)
                      ++|.|+.++..    .+.+++..++++|.+|+.... ....+++.|+++.|+.++.  +..+...++.+|+||+.. ++.
T Consensus       247 ~l~~l~~~l~~----~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~  322 (503)
T d1wa5b_         247 ALPTLAKLIYS----MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ  322 (503)
T ss_dssp             GHHHHHHHTTC----CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHhcc----ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999988    689999999999999998765 5677889999999999995  456899999999999984 444


Q ss_pred             HHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          337 RKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       337 r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ...+.+ .|+++.|..++. +.++.++..++|+|.|++.+++.....+.+.|++|.++.++..+++.++..|.++|.++.
T Consensus       323 ~~~~~~-~~~l~~l~~ll~-~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~  400 (503)
T d1wa5b_         323 TQVVIN-AGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS  400 (503)
T ss_dssp             HHHHHH-TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHhhhc-cchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHH
Confidence            556666 799999999998 678999999999999999998888999999999999999999999999999999999998


Q ss_pred             hc
Q 010064          417 VD  418 (519)
Q Consensus       417 ~~  418 (519)
                      ..
T Consensus       401 ~~  402 (503)
T d1wa5b_         401 SG  402 (503)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.9e-25  Score=225.93  Aligned_cols=309  Identities=18%  Similarity=0.233  Sum_probs=261.9

Q ss_pred             hhhHHHHHHHHHcccCChhh--HHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAA--SEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPP  178 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~--~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~  178 (519)
                      +..+.+++.++.++...+.+  .+.+.+.|+   ++.|++.|++ ++.++|..|+++|.+++..+++.+..+.+.|++++
T Consensus        27 ~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~  103 (434)
T d1q1sc_          27 LESQLQATQAARKLLSREKQPPIDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  103 (434)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCCCHHHHHHTTC---HHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHCCC---HHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhh
Confidence            66677777777776433322  355668888   9999999965 46788999999999999888889999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCC--CCHHHHHHHHHHHHHhccCCCC-hhh
Q 010064          179 LAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVA--PNPSVSEAIVANFLGLSALDSN-KPI  255 (519)
Q Consensus       179 Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~--~~~~~~~~a~~aL~~LS~~~~~-k~~  255 (519)
                      |+.+|++++.++++.++++|.||+.+++..+..+.+.|+++.|+.++..+..  ........+++.+.++...... ...
T Consensus       104 l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  183 (434)
T d1q1sc_         104 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL  183 (434)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCH
T ss_pred             hhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchh
Confidence            9999999999999999999999999888889999999999999999987632  1234456677788888776544 333


Q ss_pred             hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcC
Q 010064          256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLG--DMELSERILSILSNLVS  332 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~  332 (519)
                      ....++++.|+.++.+    .+.+++..++++|++|+..++ ....+...|+++.|+.++.  +.+++..++.+|.||+.
T Consensus       184 ~~~~~~l~~l~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         184 DAVEQILPTLVRLLHH----NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             HHHHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHhc----cccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence            3457889999999988    689999999999999998776 5566678899999999995  45699999999999998


Q ss_pred             -CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064          333 -TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRI  411 (519)
Q Consensus       333 -~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~  411 (519)
                       +++.+..+.. .|+++.|+.++. +.++.+++.|+++|.||+..+.+....+.+.|++|.++.++.++++.++..|.++
T Consensus       260 ~~~~~~~~~~~-~~~~~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~  337 (434)
T d1q1sc_         260 GTDEQTQKVID-AGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  337 (434)
T ss_dssp             SCHHHHHHHHH-TTGGGGHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHh-ccccchHHHhhc-ccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence             5566777777 799999999999 6789999999999999999888889999999999999999999999999999999


Q ss_pred             HHHhhhcC
Q 010064          412 LECLRVDK  419 (519)
Q Consensus       412 L~~l~~~~  419 (519)
                      |.++....
T Consensus       338 l~nl~~~~  345 (434)
T d1q1sc_         338 ITNYTSGG  345 (434)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHhcC
Confidence            99998553

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.2e-25  Score=233.65  Aligned_cols=307  Identities=19%  Similarity=0.177  Sum_probs=263.2

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG  181 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~  181 (519)
                      ...+..++.+|.+++.++..+..+.+.|+   ++.|+++|++++.+.+..|+++|.+|+.+++..+..+.+.|+|++|+.
T Consensus        74 ~~~~~~a~~~L~~l~~~~~~~~~i~~~g~---i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~  150 (529)
T d1jdha_          74 VETARCTAGTLHNLSHHREGLLAIFKSGG---IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA  150 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHCCC---HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHH
Confidence            44567788899999999988888988888   999999999999999999999999999988888999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCC
Q 010064          182 MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGA  261 (519)
Q Consensus       182 lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~ga  261 (519)
                      +|++++++++..++++|.+|+..++.++..+.+.|+++.|+.++..+.  +..++..+++++.+++.+++++..+.+.|+
T Consensus       151 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~  228 (529)
T d1jdha_         151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  228 (529)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred             HHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh--hHHHHHHHHHHHhhhhccccccchhhhhhh
Confidence            999999999999999999999988889999999999999999997652  467888888888888877777777777776


Q ss_pred             hHHHHHHhhcC---------------------------------------------------------------------
Q 010064          262 VPFLVKTLKNS---------------------------------------------------------------------  272 (519)
Q Consensus       262 i~~LV~lL~~~---------------------------------------------------------------------  272 (519)
                      ++.|+.++...                                                                     
T Consensus       229 ~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~  308 (529)
T d1jdha_         229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             hhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhh
Confidence            66666555332                                                                     


Q ss_pred             --------------------------------------------------------CCCCCHHHHHHHHHHHHHhcCCCc
Q 010064          273 --------------------------------------------------------DKKVSPQAKQDALRALYNLSIFPS  296 (519)
Q Consensus       273 --------------------------------------------------------~~~~~~~~~~~A~~aL~nLs~~~~  296 (519)
                                                                              .+..+...+..++++|.||+.+++
T Consensus       309 ~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~  388 (529)
T d1jdha_         309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             hHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence                                                                    122445667777788888888877


Q ss_pred             cHHHHHhcCcHHHHHHHcCC------------------------HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhh
Q 010064          297 NISFILETDLIRYLLEMLGD------------------------MELSERILSILSNLVSTPEGRKAISRVPDAFPILVD  352 (519)
Q Consensus       297 n~~~l~~~g~v~~Lv~lL~~------------------------~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~  352 (519)
                      ++..+.+.|+++.|+.+|.+                        .++.+.++.+|.+++..+.+|..+.. .|+++.|+.
T Consensus       389 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~-~~~i~~Lv~  467 (529)
T d1jdha_         389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG-LNTIPLFVQ  467 (529)
T ss_dssp             GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH-TTCHHHHHH
T ss_pred             hhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHH-CCCHHHHHH
Confidence            88888888999999988732                        23667788899999988888888877 799999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          353 VLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       353 lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +|. ++++.++..|+++|++|+.. ++.++.+.+.|+++.|++++.++++.++..|..+|..|.
T Consensus       468 lL~-~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         468 LLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             GGG-CSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HhC-CCCHHHHHHHHHHHHHHhcC-hhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            998 67899999999999999976 677889999999999999999999999999999998763

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-24  Score=231.89  Aligned_cols=305  Identities=21%  Similarity=0.207  Sum_probs=264.4

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVKDLQS-ESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~~L~s-~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      ...+.+++..+.+++.++..+..+...  .+.++.+++.|.. ++.+.+..|+.+|.+|+. +++.+..+.+.|++|+|+
T Consensus        31 ~~v~~~A~~~l~~l~~~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li  107 (529)
T d1jdha_          31 QVVVNKAAVMVHQLSKKEASRHAIMRS--PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALV  107 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHTC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHh--hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHH
Confidence            556788888999998777666655443  2348999999964 578899999999999995 568999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhC
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSS  259 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~  259 (519)
                      .+|++++++++..|+++|.||+.+++..+..+.+.|++|.|+.+++++   +..++..++.+|.+++..+ +.+..+...
T Consensus       108 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  184 (529)
T d1jdha_         108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILAS  184 (529)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc---ChHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence            999999999999999999999998888899999999999999999998   8999999999999998764 446777789


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccH
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGR  337 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r  337 (519)
                      |+++.|+.++...   ....++..++++|.|++.+++++..+++.|++++|+.++.  +.++...++++|.|++..... 
T Consensus       185 ~~~~~L~~ll~~~---~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~-  260 (529)
T d1jdha_         185 GGPQALVNIMRTY---TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-  260 (529)
T ss_dssp             THHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred             ccchHHHHHHHhh---hhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc-
Confidence            9999999999874   6788999999999999999999999999999999999995  456899999999999864332 


Q ss_pred             HHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh--cCCHHHHHHHHHHHHHh
Q 010064          338 KAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL--LGSTLAQKRASRILECL  415 (519)
Q Consensus       338 ~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~--~gs~~~~~~A~~~L~~l  415 (519)
                       .... .|+++.|++++. ++++.+++.|+++|+||+.++++++..+.+.|+++.|+.++.  .+.+.++..|..+|.++
T Consensus       261 -~~~~-~~~i~~Lv~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l  337 (529)
T d1jdha_         261 -QEGM-EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  337 (529)
T ss_dssp             -CSCC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -hhhh-hhcchhhhhhcc-cccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcc
Confidence             2223 478999999998 678999999999999999988899999999999999999886  45678999999999999


Q ss_pred             hhcC
Q 010064          416 RVDK  419 (519)
Q Consensus       416 ~~~~  419 (519)
                      ....
T Consensus       338 ~~~~  341 (529)
T d1jdha_         338 TSRH  341 (529)
T ss_dssp             TSSS
T ss_pred             cchh
Confidence            8543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.7e-23  Score=219.61  Aligned_cols=303  Identities=17%  Similarity=0.177  Sum_probs=263.0

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      ...+.+++.+|.+++.+ +.....+...|+   ++.++..|.+++.+.+..|+++|.+|+.+++.+|..+.+.|++++|+
T Consensus       134 ~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~---i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~  210 (503)
T d1wa5b_         134 EMLQLEAAWALTNIASGTSAQTKVVVDADA---VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL  210 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---HHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHhCCC---hHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccch
Confidence            34566788899999754 456666767787   99999999999999999999999999988889999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hhhhhhC
Q 010064          181 GMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KPIIGSS  259 (519)
Q Consensus       181 ~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~~I~~~  259 (519)
                      .++.+.+..++..++++|.||+...+.........|++|.|+.++.+.   +.++...++++|.+++..... ...+.+.
T Consensus       211 ~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~---d~~~~~~~~~~l~~l~~~~~~~~~~~~~~  287 (503)
T d1wa5b_         211 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDV  287 (503)
T ss_dssp             HGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             hhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHhhccCCchhhhhhhhh
Confidence            999999999999999999999986555555556678999999999998   899999999999999876543 5667789


Q ss_pred             CChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-Ccc
Q 010064          260 GAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVS-TPE  335 (519)
Q Consensus       260 gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e  335 (519)
                      |+++.|+.++.+    .+..++..|+.+|.||+.+.+ ....+++.|+++.|..++.+  +.++..++++|+|++. +++
T Consensus       288 ~~~~~l~~ll~~----~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~  363 (503)
T d1wa5b_         288 RIPKRLVELLSH----ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE  363 (503)
T ss_dssp             TCHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hhhhhhhhcccC----CchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHH
Confidence            999999999998    699999999999999998776 56667788999999999964  5689999999999988 566


Q ss_pred             cHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC---hhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHH
Q 010064          336 GRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS---YGDRQAMIEAGIASALLELTLLGSTLAQKRASRIL  412 (519)
Q Consensus       336 ~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~---~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L  412 (519)
                      ....+.+ .++++.+++++. +.++.++..|+|+|.|++.+.   .+....+.+.|+++.|++++...++.+...+..+|
T Consensus       364 ~~~~i~~-~~~l~~li~~l~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l  441 (503)
T d1wa5b_         364 QIQAVID-ANLIPPLVKLLE-VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL  441 (503)
T ss_dssp             HHHHHHH-TTCHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHH-ccccchhHHhcc-cCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            7777887 799999999998 678999999999999999743   24466788999999999999999999999888888


Q ss_pred             HHhh
Q 010064          413 ECLR  416 (519)
Q Consensus       413 ~~l~  416 (519)
                      .++-
T Consensus       442 ~~ll  445 (503)
T d1wa5b_         442 ENIL  445 (503)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.6e-24  Score=214.45  Aligned_cols=284  Identities=18%  Similarity=0.197  Sum_probs=237.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      +|.||++|+++++++|..|+.+|.+||.+++++|..+.+.|+||+|+++|++++++++..|+++|.||+.++++++..+.
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~   83 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR   83 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            89999999999999999999999999988889999999999999999999999999999999999999988899999999


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhh--------------------------------------
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPI--------------------------------------  255 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~--------------------------------------  255 (519)
                      +.|+++.|+.++....  +..++..++++|.+++..+..+..                                      
T Consensus        84 ~~g~v~~li~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          84 RQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HCCChHHHHHHHhccC--cHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999987643  678888888888888754432111                                      


Q ss_pred             ------------------h-hhCCChHHHHHHhhcC--------------------------------------------
Q 010064          256 ------------------I-GSSGAVPFLVKTLKNS--------------------------------------------  272 (519)
Q Consensus       256 ------------------I-~~~gai~~LV~lL~~~--------------------------------------------  272 (519)
                                        + ...|+++.|+.++...                                            
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                              1 1256778887766421                                            


Q ss_pred             ---------------------------------------------------CCCCCHHHHHHHHHHHHHhcCCCc-----
Q 010064          273 ---------------------------------------------------DKKVSPQAKQDALRALYNLSIFPS-----  296 (519)
Q Consensus       273 ---------------------------------------------------~~~~~~~~~~~A~~aL~nLs~~~~-----  296 (519)
                                                                         ....++..+..+.+++.+++....     
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                               012466778889999999987654     


Q ss_pred             -cHHHHHhcCcHHHHHHHcC--CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCC-----CCHHHHHHHHH
Q 010064          297 -NISFILETDLIRYLLEMLG--DMELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWT-----DSPGCQEKASY  368 (519)
Q Consensus       297 -n~~~l~~~g~v~~Lv~lL~--~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s-----~~~~~qe~A~~  368 (519)
                       ....+.+.|+++.|+.+|.  +++++..++.+|+||+.+++++..+..  ++++.|+.+|...     .+++++..|++
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence             2333456799999999995  456999999999999999999888766  5899999998632     23578999999


Q ss_pred             HHHHHhcCChhhHHHHHHcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhhcCCC
Q 010064          369 VLMVMAHKSYGDRQAMIEAGIASALLELTLL-GSTLAQKRASRILECLRVDKGK  421 (519)
Q Consensus       369 ~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~-gs~~~~~~A~~~L~~l~~~~~~  421 (519)
                      +|.||+.+++++++.+.+.|+++.|+.++.. +++.+++.|..+|.+|..++.-
T Consensus       400 ~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            9999999888999999999999999999986 5789999999999999755443

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-22  Score=209.41  Aligned_cols=304  Identities=17%  Similarity=0.183  Sum_probs=262.8

Q ss_pred             hhhHHHHHHHHHcccCC-hhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEG-EAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~-e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+..++.+|.+++.+ +..+..+.+.|+   ++.++..|.+++.+.+..|+++|.+++.+++..+..+.+.|++++|+
T Consensus        71 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~---i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~  147 (434)
T d1q1sc_          71 SPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL  147 (434)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCChhhhhHhhhccc---hhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHH
Confidence            45677888899999654 567778888888   99999999999999999999999999988888999999999999999


Q ss_pred             HhhcCCC-----HHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC-hh
Q 010064          181 GMLDFQL-----ADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN-KP  254 (519)
Q Consensus       181 ~lL~s~~-----~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~-k~  254 (519)
                      .++...+     ......+++++.+++.............++++.|+.++.++   +++++..++++|.+++..+.. ..
T Consensus       148 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~  224 (434)
T d1q1sc_         148 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIE  224 (434)
T ss_dssp             HHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc---ccchhhhHHhhhcccchhhhhhHH
Confidence            9997643     35667788999999987555565666778999999999988   899999999999999876543 55


Q ss_pred             hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhc
Q 010064          255 IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLV  331 (519)
Q Consensus       255 ~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs  331 (519)
                      .+...|+++.|+.++..    .+..++..++.+|.|++.+++ ....+++.|+++.|+.+|.+  ++++..++++|.||+
T Consensus       225 ~~~~~~~~~~Lv~ll~~----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~  300 (434)
T d1q1sc_         225 MVVKKGVVPQLVKLLGA----TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT  300 (434)
T ss_dssp             HHHTTTCHHHHHHHHTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHhhcccchhccccccc----chhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhc
Confidence            56679999999999988    699999999999999998765 67788899999999999964  459999999999999


Q ss_pred             C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      . ..+.+..+.+ .|+++.++.++. +.++.++..|+++|.|++.. +.+....+.+.|+++.|++++...+++.+..+.
T Consensus       301 ~~~~~~~~~i~~-~~~i~~li~~l~-~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l  378 (434)
T d1q1sc_         301 AGRQDQIQQVVN-HGLVPFLVGVLS-KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL  378 (434)
T ss_dssp             TSCHHHHHHHHH-TTCHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred             cccchhHHHHhh-hhhHHHHHHHHh-ccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHH
Confidence            8 5556667777 799999999998 67899999999999999975 456677889999999999999999999999999


Q ss_pred             HHHHHhhh
Q 010064          410 RILECLRV  417 (519)
Q Consensus       410 ~~L~~l~~  417 (519)
                      .+|.+|-.
T Consensus       379 ~~l~~ll~  386 (434)
T d1q1sc_         379 DAISNIFQ  386 (434)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988763

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.1e-19  Score=178.48  Aligned_cols=267  Identities=16%  Similarity=0.149  Sum_probs=210.5

Q ss_pred             hhhHHHHHHHHHcccC-ChhhHHHHHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAE-GEAASEIKKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~-~e~~~~~i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      +..+..++.+|.+++. ++.++..+.+.|+   ++.|+++|++++.+.|..|+.+|.+|+..+++++..+.+.|+++.|+
T Consensus        16 ~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li   92 (457)
T d1xm9a1          16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGG---ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV   92 (457)
T ss_dssp             THHHHHHHHHHHHHTSSCSSHHHHHHHTTH---HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCc---HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHH
Confidence            6778899999999985 5789999999998   99999999999999999999999999988889999999999999999


Q ss_pred             HhhcC-CCHHHHHHHHHHHHHhcCCC------------------------------------------------------
Q 010064          181 GMLDF-QLADSQISSLYALLNLGIGN------------------------------------------------------  205 (519)
Q Consensus       181 ~lL~s-~~~~~~~~a~~aL~NLa~~~------------------------------------------------------  205 (519)
                      .++.+ .+++++..++++|.+|+...                                                      
T Consensus        93 ~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~  172 (457)
T d1xm9a1          93 SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS  172 (457)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhc
Confidence            99865 67788888888888887532                                                      


Q ss_pred             -hhhHHHHH-hcCcHHHHHHhhcCCCC-----------------------------------------------------
Q 010064          206 -DLNKAAIV-KAGAVHKMLKLIESPVA-----------------------------------------------------  230 (519)
Q Consensus       206 -~~nk~~iv-~aG~v~~Lv~lL~s~~~-----------------------------------------------------  230 (519)
                       ++++..++ ..|+++.|+.++++...                                                     
T Consensus       173 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (457)
T d1xm9a1         173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN  252 (457)
T ss_dssp             SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------
T ss_pred             CchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhh
Confidence             11222222 24667777765531100                                                     


Q ss_pred             -------------------------------------------CCHHHHHHHHHHHHHhccCCCC------hhhhhhCCC
Q 010064          231 -------------------------------------------PNPSVSEAIVANFLGLSALDSN------KPIIGSSGA  261 (519)
Q Consensus       231 -------------------------------------------~~~~~~~~a~~aL~~LS~~~~~------k~~I~~~ga  261 (519)
                                                                 .++..++.+.+++.+++.....      +..+.+.|+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  332 (457)
T d1xm9a1         253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKG  332 (457)
T ss_dssp             -------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCC
T ss_pred             hhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCC
Confidence                                                       0111122334455555544332      344456899


Q ss_pred             hHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCC--------HHHHHHHHHHHHHhcC-
Q 010064          262 VPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGD--------MELSERILSILSNLVS-  332 (519)
Q Consensus       262 i~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~--------~~v~~~Al~~L~nLs~-  332 (519)
                      ++.|+.++.+    .+..++..++++|.||+.+++++..+. .++++.|+.+|..        .++...|+.+|.||+. 
T Consensus       333 l~~L~~~l~~----~~~~v~~~a~~~l~~La~~~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~  407 (457)
T d1xm9a1         333 LPQIARLLQS----GNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS  407 (457)
T ss_dssp             HHHHHHHTTC----SCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHhhhcC----ccHHHHHHHHHHHHHHhhChhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcC
Confidence            9999999988    699999999999999999988877665 4789999999831        3488999999999997 


Q ss_pred             CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCC
Q 010064          333 TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKS  377 (519)
Q Consensus       333 ~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~  377 (519)
                      +++.++.+.+ .|+++.|+.++.+++++.+++.|+.+|++|+.+.
T Consensus       408 ~~~~~~~l~~-~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~  451 (457)
T d1xm9a1         408 QPQLAKQYFS-SSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK  451 (457)
T ss_dssp             CTHHHHHHCC-HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred             CHHHHHHHHH-CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence            7788999998 7999999999986678899999999999998763

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-18  Score=165.17  Aligned_cols=191  Identities=16%  Similarity=0.223  Sum_probs=166.2

Q ss_pred             CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHH
Q 010064          145 SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAG-MLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLK  223 (519)
Q Consensus       145 ~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~-lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~  223 (519)
                      +.+.+..|+..|.+|+ ++.+++..+...|++++|+. +|++++++++..|+++|.+++.+++.++..+++.|++|.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4567888999999999 55688889999999999985 788899999999999999999988999999999999999999


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 010064          224 LIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIF-PSNISFI  301 (519)
Q Consensus       224 lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~l  301 (519)
                      ++.+..  ++.++..++++|.+++.+. +++..+...|+++.|+.++.+    .+..++..++++|.||+.. ++++..+
T Consensus       109 lL~~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (264)
T d1xqra1         109 LLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ----QVQKLKVKSAFLLQNLLVGHPEHKGTL  182 (264)
T ss_dssp             HHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS----SCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HhhcCC--CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhc----CchHHHHHHHHHHHHHHhccHHHHHHH
Confidence            997532  6889999999999998765 457778889999999999998    6999999999999999865 5688889


Q ss_pred             HhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcC-CcccHHHHhh
Q 010064          302 LETDLIRYLLEMLGD--MELSERILSILSNLVS-TPEGRKAISR  342 (519)
Q Consensus       302 ~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~-~~e~r~~i~~  342 (519)
                      .+.|+++.|+.+|.+  +++++.|+++|.+|+. +++.+..+..
T Consensus       183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999964  4599999999999998 5555555443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.2e-17  Score=156.40  Aligned_cols=186  Identities=16%  Similarity=0.145  Sum_probs=166.9

Q ss_pred             hhhHHHHHHHHHcccCChhhHHHHHhcchhHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHH
Q 010064          102 CVSKSEKLLDLLNLAEGEAASEIKKKEEALEELKIVVK-DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLA  180 (519)
Q Consensus       102 ~~~~~~~l~aLl~ls~~e~~~~~i~~~g~~~~l~~Lv~-~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv  180 (519)
                      ...+..++.+|.++.++..++..+.+.|+   ++.++. .|++++.++|..|+.+|.+++.+++..+..+.+.|++|+|+
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~a~~l~~~gg---~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          31 QQEREGALELLADLCENMDNAADFCQLSG---MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTH---HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCC---HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            44566777888899888888888878887   888886 67889999999999999999998889999999999999999


Q ss_pred             HhhcC-CCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcc-CCCChhhhhh
Q 010064          181 GMLDF-QLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSA-LDSNKPIIGS  258 (519)
Q Consensus       181 ~lL~s-~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~-~~~~k~~I~~  258 (519)
                      .+|.+ .++.++..++++|.+++.+++.++..+...|+++.|+.+++++   +..++..++++|.+++. +++.+..+.+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC---chHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99965 6789999999999999999999999999999999999999998   89999999999999875 5677888889


Q ss_pred             CCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCcc
Q 010064          259 SGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSN  297 (519)
Q Consensus       259 ~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n  297 (519)
                      .|++|.|+.+|.+    .++.++..|+++|.+|+....+
T Consensus       185 ~~~v~~L~~lL~~----~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         185 MGMVQQLVALVRT----EHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             TTHHHHHHHHHTS----CCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHHHHHHcC----CCHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999988    6888999999999999987653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.7e-07  Score=93.82  Aligned_cols=259  Identities=13%  Similarity=0.056  Sum_probs=178.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.+...+.+.+..++..++..+..++..-  ... ......+|.+..+++.++++++..+..++..+...-.  ...+ 
T Consensus       326 ~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~--~~~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~--~~~~-  399 (588)
T d1b3ua_         326 LPCIKELVSDANQHVKSALASVIMGLSPIL--GKD-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG--IRQL-  399 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTGGGGHHHH--CHH-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC--HHHH-
T ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhhhhcc--chh-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc--hhhh-
Confidence            556666677778888888887777765321  111 1123468999999999999999998888777664211  1112 


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcC
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSI  293 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~  293 (519)
                      ....+|.+..++++.   +..++..++..+..++..-.  .........+.++.++..    ....++..|+.+|..|+.
T Consensus       400 ~~~ll~~l~~~~~d~---~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~D----~~~~VR~~A~~~L~~l~~  470 (588)
T d1b3ua_         400 SQSLLPAIVELAEDA---KWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVE  470 (588)
T ss_dssp             HHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGC----SSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHcC--hHhHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHH
Confidence            234688899999988   88999988887777653210  111123346777777776    688999999999999874


Q ss_pred             CCccHHHHHhcCcHHHHHHHcCCHH--HHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHH
Q 010064          294 FPSNISFILETDLIRYLLEMLGDME--LSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLM  371 (519)
Q Consensus       294 ~~~n~~~l~~~g~v~~Lv~lL~~~~--v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~  371 (519)
                      .-..  .......++.+..++.+++  .+..++.++..+...-  ...... ...++.|++++. +..|.++..++.+|.
T Consensus       471 ~~~~--~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~--~~~~~~-~~ilp~ll~~~~-D~v~nVR~~a~~~l~  544 (588)
T d1b3ua_         471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC--GQDITT-KHMLPTVLRMAG-DPVANVRFNVAKSLQ  544 (588)
T ss_dssp             HHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH--HHHHHH-HHTHHHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred             HhCc--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc--ChHHHH-HHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3211  1122346778888886654  6667777777776421  112222 358899999998 578999999999999


Q ss_pred             HHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          372 VMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       372 nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .+...-..   ......+.|.|..+..+.+.++|..|..+|..|.
T Consensus       545 ~i~~~~~~---~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         545 KIGPILDN---STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHGGGSCH---HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCc---HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99864221   2344456788899999999999999999998774

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.8e-06  Score=90.43  Aligned_cols=259  Identities=15%  Similarity=0.108  Sum_probs=179.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC-hhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGN-DLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~-~~nk~~i  212 (519)
                      ++.+..++..++..+|..|+..+..+...-...  .+ ..-++|.+..+.+++....+..++..+..+.... +..+.. 
T Consensus        89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~~-~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~-  164 (588)
T d1b3ua_          89 LPPLESLATVEETVVRDKAVESLRAISHEHSPS--DL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE-  164 (588)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH-
Confidence            455556677888899999999999988653221  11 2234555556777777888888888888887542 222322 


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                          +++.+.+++++.   ++.++..++.++..++..-..  .......+|.+..++..    .+..++..|+.+|..++
T Consensus       165 ----l~~~~~~l~~D~---~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d----~~~~vr~~a~~~l~~i~  231 (588)
T d1b3ua_         165 ----LRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASD----EQDSVRLLAVEACVNIA  231 (588)
T ss_dssp             ----HHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTC----SCHHHHTTHHHHHHHHH
T ss_pred             ----HHHHHHHHhccC---CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHhh
Confidence                578888899888   899999999999888754322  22345567888888877    68999999999999987


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                      ..-...  ......++.+..++.|+  .++..++.+|.+++..-.  ..+.. ...++.+..++. +.++.++..|+..+
T Consensus       232 ~~~~~~--~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~-~~l~~~l~~ll~-d~~~~vr~~a~~~l  305 (588)
T d1b3ua_         232 QLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITK-TDLVPAFQNLMK-DCEAEVRAAASHKV  305 (588)
T ss_dssp             HHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHH-HTHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred             ccCCHH--HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhh-hhhhHHHHHHHh-ccchHHHHHHHHHH
Confidence            532211  12233577777888654  488899999999875211  12222 357888899998 67899999999999


Q ss_pred             HHHhcC-ChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 010064          371 MVMAHK-SYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECL  415 (519)
Q Consensus       371 ~nL~~~-~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l  415 (519)
                      ..++.. .........-..++|.+..++.+.++.++..+...+..+
T Consensus       306 ~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL  351 (588)
T ss_dssp             HHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred             HHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence            988864 223333334456777778887777777777766555544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=8.1e-06  Score=76.14  Aligned_cols=222  Identities=11%  Similarity=0.010  Sum_probs=145.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ...|++.|+++++.+|..|+..|..+...           .+++.|+.+|+++++.++..|+.+|..+... ......  
T Consensus        21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~--   86 (276)
T d1oyza_          21 DDELFRLLDDHNSLKRISSARVLQLRGGQ-----------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDN--   86 (276)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCCH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHH--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhhCCH-----------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccc--
Confidence            55788899999999999999999876521           2579999999999999999999999999764 332222  


Q ss_pred             hcCcHHHHHH-hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc
Q 010064          214 KAGAVHKMLK-LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLS  292 (519)
Q Consensus       214 ~aG~v~~Lv~-lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs  292 (519)
                         .++.|.. ++.++   ++.++..++.+|..+......    .....++.+...+..    ..+.++..++.++..+.
T Consensus        87 ---~~~~l~~~~l~d~---~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d----~~~~vr~~a~~~l~~~~  152 (276)
T d1oyza_          87 ---VFNILNNMALNDK---SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD----KSTNVRRATAFAISVIN  152 (276)
T ss_dssp             ---HHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC----SCHHHHHHHHHHHHTC-
T ss_pred             ---hHHHHHHHHhcCC---ChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcC----cchHHHHHHHHHHhhcc
Confidence               2334444 45666   789999999998887643321    122356677777766    67888888888877643


Q ss_pred             CCCccHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHH
Q 010064          293 IFPSNISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVL  370 (519)
Q Consensus       293 ~~~~n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L  370 (519)
                                ....++.+..++.+  ..+...+..++.++....         ...++.++..+. ..+..++..+..++
T Consensus       153 ----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~al  212 (276)
T d1oyza_         153 ----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ-DKNEEVRIEAIIGL  212 (276)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTT-CSCHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccc---------cccchhhhhhhh-hhhhhhhhhhcccc
Confidence                      23455666666643  335555666665544321         123334555555 45677777777776


Q ss_pred             HHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          371 MVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       371 ~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      ..+..           ..++|.|+..+.++  .++..|..+|..+.
T Consensus       213 ~~~~~-----------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig  245 (276)
T d1oyza_         213 SYRKD-----------KRVLSVLCDELKKN--TVYDDIIEAAGELG  245 (276)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC
T ss_pred             chhhh-----------hhhHHHHHHHhCCh--HHHHHHHHHHHHcC
Confidence            65432           23567777766643  46667777776653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=5e-06  Score=84.42  Aligned_cols=276  Identities=10%  Similarity=0.035  Sum_probs=187.2

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHH---HHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          135 KIVVKDLQSESEEQRREAASKVRSLAKENSETRV---TLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       135 ~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~---~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      ..+...|..++.-....+...+..++........   .+..  ....+-.+..+.+.+.+..++..|..|.. .++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHH
Confidence            4455555555555667777777777755422222   1211  23333344466888899999999999988 4889988


Q ss_pred             HHh--cCcHHHHHHhhcCCCC--------------CCHHHHHHHHHHHHHhccCCCChhhhhhC--CChHHHHHHhhcCC
Q 010064          212 IVK--AGAVHKMLKLIESPVA--------------PNPSVSEAIVANFLGLSALDSNKPIIGSS--GAVPFLVKTLKNSD  273 (519)
Q Consensus       212 iv~--aG~v~~Lv~lL~s~~~--------------~~~~~~~~a~~aL~~LS~~~~~k~~I~~~--gai~~LV~lL~~~~  273 (519)
                      +.+  ...++.|+.+|+....              ....++-.++-++|-||.+++....+.+.  +.|+.|+.+++.. 
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s-  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKIT-  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHC-
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhh-
Confidence            865  3457777776643100              02355667788999999987776766665  4599999999874 


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCc--c----HHHHHhcCcHHHHHHHc----CCHHHHH-------HHHHHHHHhcCCccc
Q 010064          274 KKVSPQAKQDALRALYNLSIFPS--N----ISFILETDLIRYLLEML----GDMELSE-------RILSILSNLVSTPEG  336 (519)
Q Consensus       274 ~~~~~~~~~~A~~aL~nLs~~~~--n----~~~l~~~g~v~~Lv~lL----~~~~v~~-------~Al~~L~nLs~~~e~  336 (519)
                        ...++.+-++.+|.|+.....  +    ...++..++++.+-.+.    .|+++.+       .--..+..|++.++.
T Consensus       281 --~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y  358 (477)
T d1ho8a_         281 --IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEY  358 (477)
T ss_dssp             --CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence              788999999999999987543  2    34455666665544443    4665332       122222334444444


Q ss_pred             HHHHhh-------------------------cCCcchhhhhhccC---------CCCHHHHHHHHHHHHHHhcCChhhHH
Q 010064          337 RKAISR-------------------------VPDAFPILVDVLNW---------TDSPGCQEKASYVLMVMAHKSYGDRQ  382 (519)
Q Consensus       337 r~~i~~-------------------------~~g~i~~Lv~lL~~---------s~~~~~qe~A~~~L~nL~~~~~~~~~  382 (519)
                      ..++-.                         .-..+..|+++|..         +.++.+..-||.=++.++...|..|.
T Consensus       359 ~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~  438 (477)
T d1ho8a_         359 VAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID  438 (477)
T ss_dssp             HHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhH
Confidence            444421                         12357888888851         23566777788889999998788888


Q ss_pred             HHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          383 AMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       383 ~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      .+-+.|+=..+++|+.+.++.+|..|..+++.+-
T Consensus       439 il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         439 VLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999998775

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.1e-05  Score=73.17  Aligned_cols=198  Identities=13%  Similarity=0.031  Sum_probs=145.6

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC
Q 010064          172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS  251 (519)
Q Consensus       172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~  251 (519)
                      +....+.|+++|+++++.++..|+.+|..+..  +         .+++.|+.+++++   ++.++..|+.+|..+.....
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~---~~~vr~~a~~aL~~l~~~~~   82 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDK---NYIRRDIGAFILGQIKICKK   82 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCS---SHHHHHHHHHHHHHSCCCTT
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCC---CHHHHHHHHHHHHHhccccc
Confidence            35567889999999999999999999998753  1         3689999999998   89999999999988875544


Q ss_pred             ChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHH
Q 010064          252 NKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLGDM--ELSERILSILSN  329 (519)
Q Consensus       252 ~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~n  329 (519)
                      ....     .++.|...+.+.   .++.++..|+.+|.++........    ...++.+...+.|+  .++..++.++..
T Consensus        83 ~~~~-----~~~~l~~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~  150 (276)
T d1oyza_          83 CEDN-----VFNILNNMALND---KSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISV  150 (276)
T ss_dssp             THHH-----HHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred             cccc-----hHHHHHHHHhcC---CChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence            4332     255666655443   789999999999999875443211    13456677777554  477777777664


Q ss_pred             hcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          330 LVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       330 Ls~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      +.          + ...++.+..++. ..++.+...+..++.++......         .++.++..+.+.+..++..+.
T Consensus       151 ~~----------~-~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  209 (276)
T d1oyza_         151 IN----------D-KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAI  209 (276)
T ss_dssp             C--------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHH
T ss_pred             cc----------h-HHHHHHHHHhcc-cccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhc
Confidence            32          2 456777888887 56788888888888887766443         455677888888999999988


Q ss_pred             HHHHHhh
Q 010064          410 RILECLR  416 (519)
Q Consensus       410 ~~L~~l~  416 (519)
                      .++..+.
T Consensus       210 ~al~~~~  216 (276)
T d1oyza_         210 IGLSYRK  216 (276)
T ss_dssp             HHHHHTT
T ss_pred             cccchhh
Confidence            8887654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.6e-05  Score=75.46  Aligned_cols=275  Identities=10%  Similarity=0.054  Sum_probs=171.9

Q ss_pred             chhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCC
Q 010064          129 EALEELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIG  204 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~  204 (519)
                      .+.+.++.+++.+.++  +...+..++.++..++.........-.-...++.++..+.+  .+.+++..+..++.++...
T Consensus       124 ~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~  203 (458)
T d1ibrb_         124 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  203 (458)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             cCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHh
Confidence            3456688888888654  45566677777777664321111100112246778888865  4678999999999999875


Q ss_pred             ChhhHH-HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHHHHhhcCCCCCCHHHH
Q 010064          205 NDLNKA-AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLVKTLKNSDKKVSPQAK  281 (519)
Q Consensus       205 ~~~nk~-~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV~lL~~~~~~~~~~~~  281 (519)
                      ...... ........+.+...+.++   +++++..+..+|..+.....  ..+.+ .....+.+...+.+    .+..++
T Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~----~~~~~~  275 (458)
T d1ibrb_         204 TKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKS----DIDEVA  275 (458)
T ss_dssp             THHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHC----SSHHHH
T ss_pred             hhhhhhhHHHHHHhHhhHHHHhcCC---CHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcc----ccHHHH
Confidence            443321 222334667788888887   89999988888877753321  11111 22233445555555    678888


Q ss_pred             HHHHHHHHHhcCCCc---------------------cHHHHHhcCcHHHHHHHcCC------H---HHHHHHHHHHHHhc
Q 010064          282 QDALRALYNLSIFPS---------------------NISFILETDLIRYLLEMLGD------M---ELSERILSILSNLV  331 (519)
Q Consensus       282 ~~A~~aL~nLs~~~~---------------------n~~~l~~~g~v~~Lv~lL~~------~---~v~~~Al~~L~nLs  331 (519)
                      ..|+..+..++....                     ..........++.+...+.+      .   .+...+..++..++
T Consensus       276 ~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~  355 (458)
T d1ibrb_         276 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  355 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHH
Confidence            899988887753211                     00111111233444444421      1   26667777777776


Q ss_pred             C-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHH
Q 010064          332 S-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRAS  409 (519)
Q Consensus       332 ~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~  409 (519)
                      . .++   .+..  ..++.+.+.+. ++++..++.|+.+|+.++.+... ..+. .-..++|.|+..+.+.++.+|..|.
T Consensus       356 ~~~~~---~~~~--~l~~~i~~~l~-s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~  428 (458)
T d1ibrb_         356 TCCED---DIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAA  428 (458)
T ss_dssp             HHTTT---THHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HhccH---hhhh--HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5 221   1222  25567777787 67899999999999999865321 1111 1245799999999999999999999


Q ss_pred             HHHHHhhhc
Q 010064          410 RILECLRVD  418 (519)
Q Consensus       410 ~~L~~l~~~  418 (519)
                      ++|..+.+.
T Consensus       429 ~~l~~i~~~  437 (458)
T d1ibrb_         429 WTVGRICEL  437 (458)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998854

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.7e-05  Score=85.74  Aligned_cols=277  Identities=11%  Similarity=0.028  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          131 LEELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       131 ~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .+.++.++..|.+.++.+|..|+++|..++.... ...... -..+++.++..+.++++.++..|+++|.+++......-
T Consensus       435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l  513 (888)
T d1qbkb_         435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL  513 (888)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            3457888889999999999999999998874211 111112 24578899999999999999999999999985321111


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc---cCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS---ALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS---~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      ...+ ..+++.|+..+...   .......+..++..+.   ...-.+..+. ...++.++..+...  ..+.......+.
T Consensus       514 ~p~~-~~il~~l~~~l~~~---~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~--~~~~~~~~~~le  586 (888)
T d1qbkb_         514 VPYL-AYILDTLVFAFSKY---QHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNML--KDEDKDLFPLLE  586 (888)
T ss_dssp             GGGH-HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTS--CTTCTTHHHHHH
T ss_pred             hhHH-HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhc--ccchHHHHHHHH
Confidence            1111 23567778888776   5555555444444443   2111222222 22456666666542  112222334455


Q ss_pred             HHHHhcCC--Ccc---HHHHHhcCcHHHHHH--------Hc-------CCHHHHHHHHHHHHHhcC-CcccHHHHhhcCC
Q 010064          287 ALYNLSIF--PSN---ISFILETDLIRYLLE--------ML-------GDMELSERILSILSNLVS-TPEGRKAISRVPD  345 (519)
Q Consensus       287 aL~nLs~~--~~n---~~~l~~~g~v~~Lv~--------lL-------~~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g  345 (519)
                      +|..+...  ...   ...+.+ .++..+..        ..       .+.++...++.++..+.. ....-..++....
T Consensus       587 ~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~  665 (888)
T d1qbkb_         587 CLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN  665 (888)
T ss_dssp             HHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSC
T ss_pred             HHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhh
Confidence            55554321  111   111111 11111111        11       123466677777777765 2222333443245


Q ss_pred             cchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          346 AFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       346 ~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .++.+...+. ..++.+++.|..++..|+......-.... ..+++.|+.-+.+..+.++..|.+++.-+...
T Consensus       666 l~~~l~~~l~-~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~  736 (888)
T d1qbkb_         666 ILTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQ  736 (888)
T ss_dssp             HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence            6777778887 67899999999999888864333221111 23677778878888889999999999887743

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.2e-06  Score=92.42  Aligned_cols=269  Identities=11%  Similarity=0.065  Sum_probs=170.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKE-NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAI  212 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~i  212 (519)
                      +..|++.+.+.|++.|.-|+..|.+.... ....-... ...+++.|+.+|+..++++|..|+.+|..|+....+..   
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~-~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~---   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh---
Confidence            66788899999999999999888774322 11100000 11267899999999999999999999999987533321   


Q ss_pred             HhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhc----cCCCChh--hhhhCCChHHHHHHhhcCCCCCCHHHHHHHHH
Q 010064          213 VKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLS----ALDSNKP--IIGSSGAVPFLVKTLKNSDKKVSPQAKQDALR  286 (519)
Q Consensus       213 v~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS----~~~~~k~--~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~  286 (519)
                      + ..+++.|+..+.++   +...+..+..+|..+.    .......  .......++.|...+...   .+..++..|+.
T Consensus        81 ~-~~l~~~L~~~l~~~---~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~v~~~al~  153 (1207)
T d1u6gc_          81 V-ETIVDTLCTNMLSD---KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ---EDVSVQLEALD  153 (1207)
T ss_dssp             H-HHHHHHHHHHTTCS---SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC---SCHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCC---chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHH
Confidence            1 23678888877776   6677776655554432    1111111  111123445555555553   67889999999


Q ss_pred             HHHHhcCCCc-cHHHHHhcCcHHHHHHHcCC--HHHHHHHHHHHHHhcCCcccHHHHhhcCCcchhhhhhccCCCCHHHH
Q 010064          287 ALYNLSIFPS-NISFILETDLIRYLLEMLGD--MELSERILSILSNLVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQ  363 (519)
Q Consensus       287 aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~--~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~q  363 (519)
                      +|..+...-. .... ....+++.|+..|.+  ..++..|+.+|..|+..-.  ....  ...++.+++.+..+.+...+
T Consensus       154 ~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~--~~~~--~~~~~~ll~~l~~~~~~~~~  228 (1207)
T d1u6gc_         154 IMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG--NIVF--VDLIEHLLSELSKNDSMSTT  228 (1207)
T ss_dssp             HHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSC
T ss_pred             HHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCC--HHHH--HHHHHHHHHHHccCCCHHHH
Confidence            9988864322 1100 012345566666654  3489999999999987321  1111  23566677666534455566


Q ss_pred             HHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhcCCC
Q 010064          364 EKASYVLMVMAHKSYGDRQAMI--EAGIASALLELTLLGSTLAQKRASRILECLRVDKGK  421 (519)
Q Consensus       364 e~A~~~L~nL~~~~~~~~~~i~--~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~~~~  421 (519)
                      ..++.++..|+...+..   +.  -..++|.++..+...++.++..+..++..+...-..
T Consensus       229 ~~~~~~l~~l~~~~~~~---~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         229 RTYIQCIAAISRQAGHR---IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             TTHHHHHHHHHHHSSGG---GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            66778888887542211   11  146789999999999999999999999988854433

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00033  Score=69.01  Aligned_cols=255  Identities=12%  Similarity=0.111  Sum_probs=150.6

Q ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHhccChhhH-HHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSE--SEEQRREAASKVRSLAKENSETR-VTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~--~~~~~~~Aa~~L~~La~~~~~~r-~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .++.+++.+.+.  +.+++..|+..+..+.......- .........+.+...+.+++++++..++.+|..++......-
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            367777777654  56788999999988775432211 111112345677788888999999999999999986433321


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-----------------CChhh----hhhCCChHHHHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-----------------SNKPI----IGSSGAVPFLVKT  268 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-----------------~~k~~----I~~~gai~~LV~l  268 (519)
                      ...+..-..+.+...+.+.   +..++..++..+..++...                 .....    ..-...++.+...
T Consensus       252 ~~~l~~~~~~~~~~~~~~~---~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  328 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  328 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence            1222233445556666776   7788777766665553110                 00000    0012234445554


Q ss_pred             hhcC---CCCCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCcHHHHHHHcCCH--HHHHHHHHHHHHhcCCc--ccHHHH
Q 010064          269 LKNS---DKKVSPQAKQDALRALYNLSIFPS-NISFILETDLIRYLLEMLGDM--ELSERILSILSNLVSTP--EGRKAI  340 (519)
Q Consensus       269 L~~~---~~~~~~~~~~~A~~aL~nLs~~~~-n~~~l~~~g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~--e~r~~i  340 (519)
                      +...   ....+...+..|..++..++.... ...    ...++.+...+.++  .+++.|+.+|+.++...  +..+..
T Consensus       329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~  404 (458)
T d1ibrb_         329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV----PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL  404 (458)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred             hhcchhhhccccccHHHHHHHHHHHHHHhccHhhh----hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH
Confidence            4332   112334567778888877764322 111    12345555666544  48889999999998632  222233


Q ss_pred             hhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcC
Q 010064          341 SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLG  400 (519)
Q Consensus       341 ~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~g  400 (519)
                      .  ...++.|+..++ +.++.++..|+++|..++..-++   .....-.++.++..+..|
T Consensus       405 l--~~i~~~l~~~l~-d~~~~VR~~a~~~l~~i~~~~~~---~~~~~~~l~~ll~~ll~g  458 (458)
T d1ibrb_         405 V--IQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPE---AAINDVYLAPLLQCLIEG  458 (458)
T ss_dssp             T--TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGGG---GCCSTTTHHHHHHHHHCC
T ss_pred             H--HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhhc---ccchhhHHHHHHHHHhCc
Confidence            3  358889999998 67899999999999998743111   011122467766666544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00028  Score=77.27  Aligned_cols=270  Identities=14%  Similarity=0.036  Sum_probs=158.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhh-HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhh-HHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSET-RVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLN-KAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~-r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~n-k~~  211 (519)
                      ++.+.+.+.+.++..|..|+.++..++....+. ...+  ..+++.|+.+|+++++.++..++++|..++...... ...
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l--~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc--hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            455556778888999999999999888543221 1111  235778888899999999999999999987421111 122


Q ss_pred             HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC--CCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          212 IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL--DSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       212 iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~--~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                      . -..+++.++..+.++   ++.+++.|+++|.++...  +...+.+  ...++.|+..+..    ........+..++.
T Consensus       475 ~-~~~~l~~ll~~l~d~---~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~----~~~~~~~~~~~al~  544 (888)
T d1qbkb_         475 Y-LKPLMTELLKRILDS---NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSK----YQHKNLLILYDAIG  544 (888)
T ss_dssp             H-TTTHHHHHHHHHSSS---CHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTT----CCHHHHHHHHHHHH
T ss_pred             h-hhhhHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhh----hhHHHHHHHHHHHH
Confidence            2 235788899988888   899999999999887633  1222221  2345666776665    45666666666666


Q ss_pred             HhcCCC---ccHHHHHhcCcHHHHHHHcC----CHHHHHHHHHHHHHhcC--Ccc---cHHHHhhcCCcchhhhhhc---
Q 010064          290 NLSIFP---SNISFILETDLIRYLLEMLG----DMELSERILSILSNLVS--TPE---GRKAISRVPDAFPILVDVL---  354 (519)
Q Consensus       290 nLs~~~---~n~~~l~~~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~--~~e---~r~~i~~~~g~i~~Lv~lL---  354 (519)
                      .++..-   -+...+++ ..++.+.....    +.......+.+|..++.  ...   ....+..  .++..+...+   
T Consensus       545 ~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~  621 (888)
T d1qbkb_         545 TLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ--RCVNLVQKTLAQA  621 (888)
T ss_dssp             HHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH--HHHHHHHHHHHHH
Confidence            664321   12222221 23444444432    12223344455555443  111   1111111  1111221111   


Q ss_pred             ---------cCCCCHHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          355 ---------NWTDSPGCQEKASYVLMVMAHKSYG-DRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       355 ---------~~s~~~~~qe~A~~~L~nL~~~~~~-~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                               ....+......+..++..++..-.. ....+.....++.++..+.+.++.++..|..++.-+...
T Consensus       622 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~  695 (888)
T d1qbkb_         622 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA  695 (888)
T ss_dssp             HHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence                     1112345566666677777653222 233444567889999999999999999999988877743

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=0.00067  Score=72.29  Aligned_cols=265  Identities=12%  Similarity=0.102  Sum_probs=163.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAA  211 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~  211 (519)
                      .+.|...+.++|...|..|-..|..+...+.        .+.+..|...+.+  .+..++..|+..|.|...........
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~   78 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ   78 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhh
Confidence            3334445678899999999999988875541        1356678888865  45788899999999887543221111


Q ss_pred             H--------H----hcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCCChHHHHHHhhcCCCCCC
Q 010064          212 I--------V----KAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSGAVPFLVKTLKNSDKKVS  277 (519)
Q Consensus       212 i--------v----~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~gai~~LV~lL~~~~~~~~  277 (519)
                      .        +    ...+-..++..+.++   +..++..++.++..++..+  +++    ....++.|+..+.+.   .+
T Consensus        79 ~~~~~~~~~i~~~~~~~ik~~ll~~l~~~---~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~---~~  148 (861)
T d2bpta1          79 QFAQRWITQVSPEAKNQIKTNALTALVSI---EPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAE---QP  148 (861)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTT---SC
T ss_pred             hHHhhhHhcCCHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCC---Cc
Confidence            0        0    112345566777776   7888888877777765321  111    123577788887764   56


Q ss_pred             HHHHHHHHHHHHHhcCCCccH-HHHHh--cCcHHHHHHHcC----CHHHHHHHHHHHHHhcCC-cccHH-HHhhcCCcch
Q 010064          278 PQAKQDALRALYNLSIFPSNI-SFILE--TDLIRYLLEMLG----DMELSERILSILSNLVST-PEGRK-AISRVPDAFP  348 (519)
Q Consensus       278 ~~~~~~A~~aL~nLs~~~~n~-~~l~~--~g~v~~Lv~lL~----~~~v~~~Al~~L~nLs~~-~e~r~-~i~~~~g~i~  348 (519)
                      ...+..|+.+|..++..-+.. ..+..  ...+..++..+.    +..++..++.+|.++... ...-. .... ...+.
T Consensus       149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~  227 (861)
T d2bpta1         149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER-NYLMQ  227 (861)
T ss_dssp             HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh-hHHHH
Confidence            778888999999987443211 11111  122333333332    345888999999998763 21111 1111 23566


Q ss_pred             hhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhhc
Q 010064          349 ILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRVD  418 (519)
Q Consensus       349 ~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~~  418 (519)
                      .|.+.+. ..++.++..++.++..++...++.....+..-+.+.+.....+.++.++..+..++..+.+.
T Consensus       228 ~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         228 VVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            7777887 67899999999999999865333322222222333344555577888998888888777643

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=0.0012  Score=66.66  Aligned_cols=226  Identities=18%  Similarity=0.225  Sum_probs=156.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhc
Q 010064          142 QSESEEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDF-----------------QLADSQISSLYALLNLG  202 (519)
Q Consensus       142 ~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s-----------------~~~~~~~~a~~aL~NLa  202 (519)
                      ..++.+.+.-|+.++..|.+. +++|..+..  ...+++|+..|+.                 ....++-.++.+++-|+
T Consensus       175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            566777888899999998866 489998864  4467888887753                 12467899999999999


Q ss_pred             CCChhhHHHHHhc--CcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCC------hhhhhhCCChHHHHHHhhcCCC
Q 010064          203 IGNDLNKAAIVKA--GAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSN------KPIIGSSGAVPFLVKTLKNSDK  274 (519)
Q Consensus       203 ~~~~~nk~~iv~a--G~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~------k~~I~~~gai~~LV~lL~~~~~  274 (519)
                      .. +.....+.+.  +.++.|+.+++...  .+.+...++++|.|+......      ...++..++++ ++..|... +
T Consensus       254 F~-~~~~~~l~~~~~~~i~~l~~i~~~s~--KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~-~l~~L~~r-~  328 (477)
T d1ho8a_         254 FN-PVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSER-K  328 (477)
T ss_dssp             TS-HHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSS-C
T ss_pred             cC-HHHHHHHHHhhhHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhH-HHHHHhcC-C
Confidence            94 7777777775  45999999987542  789999999999998765321      23344555554 45555543 2


Q ss_pred             CCCHHHHHHHHHHHHH--------hcCCCccHHH------------------------HHhc--CcHHHHHHHcC-----
Q 010064          275 KVSPQAKQDALRALYN--------LSIFPSNISF------------------------ILET--DLIRYLLEMLG-----  315 (519)
Q Consensus       275 ~~~~~~~~~A~~aL~n--------Ls~~~~n~~~------------------------l~~~--g~v~~Lv~lL~-----  315 (519)
                      =.++++..+ +..|..        +++.+++...                        +-+.  ..+..|+.+|.     
T Consensus       329 ~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~  407 (477)
T d1ho8a_         329 YSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRN  407 (477)
T ss_dssp             CSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccc
Confidence            245554433 333321        2221112111                        1111  35788889884     


Q ss_pred             -------CHHHHHHHHHHHHHhcC-CcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          316 -------DMELSERILSILSNLVS-TPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       316 -------~~~v~~~Al~~L~nLs~-~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                             |+.+..-||.=++.++. +|++|..+.+ -|+=..++++|. +++++++.+|..++--|..+
T Consensus       408 ~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~-lg~K~~vM~Lm~-h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         408 GDVNAKQEKIIIQVALNDITHVVELLPESIDVLDK-TGGKADIMELLN-HSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             TCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHH-HSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcceeehhhhhHHHHHHHCcchhHHHHH-cCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence                   22366678888999998 8999988888 688888999998 67999999999998877644

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0062  Score=64.80  Aligned_cols=276  Identities=11%  Similarity=0.038  Sum_probs=168.2

Q ss_pred             chhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhccChhhHHHHHh--cCCHHHHHHhhcC--CCHHHHHHHHHHHHHhc
Q 010064          129 EALEELKIVVKDLQSES--EEQRREAASKVRSLAKENSETRVTLAM--LGAIPPLAGMLDF--QLADSQISSLYALLNLG  202 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~--~~~~~~Aa~~L~~La~~~~~~r~~l~~--~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa  202 (519)
                      .|.+.++.|++.+.+++  ...+..++.+|..++.+-..  ..+..  ..+++.++..+.+  .+..++..+..++.++.
T Consensus       125 ~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~  202 (876)
T d1qgra_         125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred             ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHH
Confidence            46677889998886554  56677788888888754211  11111  3467788888865  45789999999998887


Q ss_pred             CCChhhH-HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC-CChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          203 IGNDLNK-AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD-SNKPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       203 ~~~~~nk-~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~-~~k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      .....+- ......-+++.+...++++   ++.++..+..+|..+...- +.-.........+.+...+..    ....+
T Consensus       203 ~~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~  275 (876)
T d1qgra_         203 EFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS----DIDEV  275 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC----SSHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc----ccHHH
Confidence            5433221 1111122567777788887   8899998888887776432 111111223344555555555    57788


Q ss_pred             HHHHHHHHHHhcCCCc---------------------cHHHHHhcCcHHHHHHHcCC------H---HHHHHHHHHHHHh
Q 010064          281 KQDALRALYNLSIFPS---------------------NISFILETDLIRYLLEMLGD------M---ELSERILSILSNL  330 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~---------------------n~~~l~~~g~v~~Lv~lL~~------~---~v~~~Al~~L~nL  330 (519)
                      +..++..+..++....                     ..........++.+...+..      .   .+...|..+|..+
T Consensus       276 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l  355 (876)
T d1qgra_         276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            8888877776653211                     11111112233344444421      1   1566666666666


Q ss_pred             cCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHH
Q 010064          331 VSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASR  410 (519)
Q Consensus       331 s~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~  410 (519)
                      +...  ...+..  -.++.+.+.+. +.+...++.++..+..+..+.......-.-..+++.++..+.+.++.++..|.+
T Consensus       356 ~~~~--~~~~~~--~~~~~i~~~l~-~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~  430 (876)
T d1qgra_         356 ATCC--EDDIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW  430 (876)
T ss_dssp             HHHH--GGGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHh--hhhhhh--hhHHHHHHhhc-cchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence            6421  112222  24455666666 567888999998888887653222222223457889999999999999999999


Q ss_pred             HHHHhhhc
Q 010064          411 ILECLRVD  418 (519)
Q Consensus       411 ~L~~l~~~  418 (519)
                      ++..+.+.
T Consensus       431 ~l~~~~~~  438 (876)
T d1qgra_         431 TVGRICEL  438 (876)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988854

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.28  E-value=0.00016  Score=58.34  Aligned_cols=88  Identities=17%  Similarity=0.112  Sum_probs=73.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCCh
Q 010064          174 GAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNK  253 (519)
Q Consensus       174 G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k  253 (519)
                      ..+++|+..|+++++.++..++++|.++...           ++++.|..+++++   ++.++..++.+|..+.      
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~---~~~VR~~a~~aL~~i~------   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDD---SGFVRSGAARSLEQIG------   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHC---CTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHHHHhhhccc---hhHHHHHHHHHHHHhC------
Confidence            3688999999999999999999999876531           3679999999988   8999999999987663      


Q ss_pred             hhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 010064          254 PIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALY  289 (519)
Q Consensus       254 ~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~  289 (519)
                          ...+++.|..++..    .++.++..|+.+|.
T Consensus        82 ----~~~~~~~L~~ll~d----~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 ----GERVRAAMEKLAET----GTGFARKVAVNYLE  109 (111)
T ss_dssp             ----SHHHHHHHHHHTTS----CCTHHHHHHHHHGG
T ss_pred             ----ccchHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence                34568889888887    68899999998873

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.26  E-value=0.00014  Score=58.71  Aligned_cols=85  Identities=20%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHH
Q 010064          134 LKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIV  213 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv  213 (519)
                      ++.|++.|.+++..+|..|+.+|.++...           ++++.|+.+|+++++.++..++++|..+..          
T Consensus        24 ~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~----------   82 (111)
T d1te4a_          24 FEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------   82 (111)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHHHHhhhccchhHHHHHHHHHHHHhCc----------
Confidence            67888999999999999999998765421           257899999999999999999999998753          


Q ss_pred             hcCcHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 010064          214 KAGAVHKMLKLIESPVAPNPSVSEAIVANF  243 (519)
Q Consensus       214 ~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL  243 (519)
                       ..+++.|..+++++   ++.++..|+.+|
T Consensus        83 -~~~~~~L~~ll~d~---~~~vr~~A~~aL  108 (111)
T d1te4a_          83 -ERVRAAMEKLAETG---TGFARKVAVNYL  108 (111)
T ss_dssp             -HHHHHHHHHHTTSC---CTHHHHHHHHHG
T ss_pred             -cchHHHHHHHHcCC---CHHHHHHHHHHH
Confidence             23688899999988   899999887765

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.013  Score=61.95  Aligned_cols=276  Identities=12%  Similarity=0.065  Sum_probs=163.4

Q ss_pred             chhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccChh-hHHHHHh-cCCHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q 010064          129 EALEELKIVVKDLQSES-EEQRREAASKVRSLAKENSE-TRVTLAM-LGAIPPLAGMLD--FQLADSQISSLYALLNLGI  203 (519)
Q Consensus       129 g~~~~l~~Lv~~L~s~~-~~~~~~Aa~~L~~La~~~~~-~r~~l~~-~G~i~~Lv~lL~--s~~~~~~~~a~~aL~NLa~  203 (519)
                      .|.+.++.|++.+.+++ ...+..|+.++..++..... ....+.. ...+..++..+.  ..+..++..+..++.++..
T Consensus       131 ~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~  210 (861)
T d2bpta1         131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI  210 (861)
T ss_dssp             CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred             chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46677888888887655 45677788888888754221 1110100 112344444443  3568899999999999887


Q ss_pred             CChhhHH-HHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCC--ChhhhhhCCChHHHH-HHhhcCCCCCCHH
Q 010064          204 GNDLNKA-AIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDS--NKPIIGSSGAVPFLV-KTLKNSDKKVSPQ  279 (519)
Q Consensus       204 ~~~~nk~-~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~--~k~~I~~~gai~~LV-~lL~~~~~~~~~~  279 (519)
                      ....+-. .......++.|...++++   ++.++..+..++..+...-.  ..+.+  ...+..+. ....+    .++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~i~~~~~~~~~~~l--~~~l~~l~~~~~~~----~~~~  281 (861)
T d2bpta1         211 FIKNNMEREGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKYYTFMKPYM--EQALYALTIATMKS----PNDK  281 (861)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHHHGGGCHHHH--HHTHHHHHHHHTTC----SSHH
T ss_pred             HHhHhHHhhhhhhHHHHhHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcC----ccHH
Confidence            5444321 112234677888888888   89999988888877754211  11111  11233332 33333    6888


Q ss_pred             HHHHHHHHHHHhcCCCccH-----------------HHHHhcCcHHHHHHHcCC---------HHHHHHHHHHHHHhcCC
Q 010064          280 AKQDALRALYNLSIFPSNI-----------------SFILETDLIRYLLEMLGD---------MELSERILSILSNLVST  333 (519)
Q Consensus       280 ~~~~A~~aL~nLs~~~~n~-----------------~~l~~~g~v~~Lv~lL~~---------~~v~~~Al~~L~nLs~~  333 (519)
                      ++..++..+..++......                 ....-...++.+...+..         ......+..+|..++..
T Consensus       282 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  361 (861)
T d2bpta1         282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN  361 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhh
Confidence            9999988887775432110                 000111234455555521         12555566666665542


Q ss_pred             cccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 010064          334 PEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILE  413 (519)
Q Consensus       334 ~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~  413 (519)
                      ..  ..+..  -.++.+...+. +.++..++.++.++..++.........-.-..+++.++..+.+.++.++..|.+++.
T Consensus       362 ~~--~~~~~--~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~  436 (861)
T d2bpta1         362 CG--NHILE--PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIG  436 (861)
T ss_dssp             HG--GGGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             cc--hhhhh--hhcchhhhhhh-hHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHH
Confidence            11  11111  12333444455 677889999999999888754332222222347899999999999999999999999


Q ss_pred             Hhhhc
Q 010064          414 CLRVD  418 (519)
Q Consensus       414 ~l~~~  418 (519)
                      .+.+.
T Consensus       437 ~l~~~  441 (861)
T d2bpta1         437 RIADS  441 (861)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0085  Score=66.84  Aligned_cols=271  Identities=14%  Similarity=0.126  Sum_probs=164.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhH
Q 010064          133 ELKIVVKDLQSESEEQRREAASKVRSLAKENS-ETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNK  209 (519)
Q Consensus       133 ~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~-~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk  209 (519)
                      .++.+.+.+.+.+...+..++..+..+....+ .....+  ...++.++..+..  ....++..++.++..+........
T Consensus       432 i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~  509 (1207)
T d1u6gc_         432 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV  509 (1207)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhh--HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH
Confidence            35566667778888888888888888775432 111111  1135666666654  456788888998888876544332


Q ss_pred             HHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccC----C-----CChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          210 AAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSAL----D-----SNKPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       210 ~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~----~-----~~k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                      -.-.-...++.+...+.+.   ...+...+..++..+...    .     +....+  ...++.++..+..  ...+.++
T Consensus       510 ~~~~~~~l~~~~~~~~~~~---~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~--~~l~~~~~~~l~~--~~~~~e~  582 (1207)
T d1u6gc_         510 FHPHVQALVPPVVACVGDP---FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--KDLFTCTIKRLKA--ADIDQEV  582 (1207)
T ss_dssp             GHHHHTTTHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--HHHHHHHHHHHSC--SSSCHHH
T ss_pred             HHHHHHhhhhhHHHHHccc---cHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHH--HHHHHHHHHHHHh--cccchHH
Confidence            2333355788888888887   777777766655444311    1     111111  1234445555544  2367888


Q ss_pred             HHHHHHHHHHhcCCCc--cHHHHHhcCcHHHHHHHcCCHHHHHHHHHHHHHhcCCcc--cHHHHhhcCCcchhhhhhccC
Q 010064          281 KQDALRALYNLSIFPS--NISFILETDLIRYLLEMLGDMELSERILSILSNLVSTPE--GRKAISRVPDAFPILVDVLNW  356 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~--n~~~l~~~g~v~~Lv~lL~~~~v~~~Al~~L~nLs~~~e--~r~~i~~~~g~i~~Lv~lL~~  356 (519)
                      +..++.++..+.....  ....+  ...++.++..+.++.....++.++..++....  .-.....  ..++.+...+. 
T Consensus       583 ~~~al~~l~~l~~~~~~~~~~~~--~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~--~~~~~l~~~l~-  657 (1207)
T d1u6gc_         583 KERAISCMGQIICNLGDNLGSDL--PNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLG--EGVPILASFLR-  657 (1207)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCTHH--HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHH--HHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHhcc-
Confidence            9999999888754321  11111  23456666777766677788888888876321  1122222  36778888888 


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhh
Q 010064          357 TDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLRV  417 (519)
Q Consensus       357 s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~~  417 (519)
                      ..+..++..+..+|..+..........-.-..+++.+..++.+.+..++..+..+|..+..
T Consensus       658 ~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~  718 (1207)
T d1u6gc_         658 KNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK  718 (1207)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHh
Confidence            5788899999999988875432211111112344555666677788888888888887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0093  Score=63.35  Aligned_cols=261  Identities=10%  Similarity=0.057  Sum_probs=161.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCChhhHHH--
Q 010064          136 IVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF--QLADSQISSLYALLNLGIGNDLNKAA--  211 (519)
Q Consensus       136 ~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s--~~~~~~~~a~~aL~NLa~~~~~nk~~--  211 (519)
                      .+++...++|.+.+..|-..|..+...+.        .|.+..|...+.+  .+..+|..|+-.|.|...........  
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            44455557888999999999988875531        2356677777755  35779999999999977543222111  


Q ss_pred             ---------HHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCC--CChhhhhhCCChHHHHHHhhcCCCCCCHHH
Q 010064          212 ---------IVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALD--SNKPIIGSSGAVPFLVKTLKNSDKKVSPQA  280 (519)
Q Consensus       212 ---------iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~--~~k~~I~~~gai~~LV~lL~~~~~~~~~~~  280 (519)
                               =.+..+...|+..+.++   +. .+..++.++..++..+  .+    ...+.+|.|++.+.+.  ..+...
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~---~~-~~~~~a~~i~~i~~~~~p~~----~Wpeli~~L~~~l~~~--~~~~~~  146 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTE---TY-RPSSASQCVAGIACAEIPVN----QWPELIPQLVANVTNP--NSTEHM  146 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTC---CS-SSCHHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCT--TCCHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCC---cH-HHHHHHHHHHHHHHHHCCcc----ccHHHHHHHHHHhcCC--CCcHHH
Confidence                     01122445677777665   32 2333444444444221  11    1256789999988763  356778


Q ss_pred             HHHHHHHHHHhcCCCccHH-HHHhcCcHHHHHHHcCC----HHHHHHHHHHHHHhcCCcccHH--HHhhcCCcchhhhhh
Q 010064          281 KQDALRALYNLSIFPSNIS-FILETDLIRYLLEMLGD----MELSERILSILSNLVSTPEGRK--AISRVPDAFPILVDV  353 (519)
Q Consensus       281 ~~~A~~aL~nLs~~~~n~~-~l~~~g~v~~Lv~lL~~----~~v~~~Al~~L~nLs~~~e~r~--~i~~~~g~i~~Lv~l  353 (519)
                      +..++.+|..++..-.... .-.....++.++..+.+    .+++..++.++.++........  .... .-.+..+...
T Consensus       147 ~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~i~~~l~~~  225 (876)
T d1qgra_         147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEA  225 (876)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHH
Confidence            8889999998864321111 01112456777777732    3588889988888765221111  1111 1244566666


Q ss_pred             ccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 010064          354 LNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTLLGSTLAQKRASRILECLR  416 (519)
Q Consensus       354 L~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~L~~l~  416 (519)
                      +. +.++.++..++.++..++...++.-...+...+.+.+........+.++..+...+..+.
T Consensus       226 ~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  287 (876)
T d1qgra_         226 TQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             TT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            77 678999999999999998765554443444455666677777778888877776666555

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.16  E-value=0.046  Score=49.79  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=37.0

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhHHHHHhcCcHH
Q 010064          140 DLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNKAAIVKAGAVH  219 (519)
Q Consensus       140 ~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk~~iv~aG~v~  219 (519)
                      .|.++..+++..|+.                  .-.++.|..+++.+++.++..+++.|   .               .+
T Consensus        50 ~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L---p---------------~~   93 (233)
T d1lrva_          50 YLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL---P---------------RE   93 (233)
T ss_dssp             GTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS---C---------------SG
T ss_pred             HhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc---C---------------HH
Confidence            355667777755542                  12355666777777777777776542   1               13


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHH
Q 010064          220 KMLKLIESPVAPNPSVSEAIVA  241 (519)
Q Consensus       220 ~Lv~lL~s~~~~~~~~~~~a~~  241 (519)
                      .|..++.++   +..++..++.
T Consensus        94 ~L~~L~~D~---d~~VR~~aa~  112 (233)
T d1lrva_          94 QLSALMFDE---DREVRITVAD  112 (233)
T ss_dssp             GGGGTTTCS---CHHHHHHHHH
T ss_pred             HHHHHhcCC---ChhHHHHHHh
Confidence            455556665   6666665543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=6.8  Score=36.30  Aligned_cols=197  Identities=15%  Similarity=0.088  Sum_probs=141.6

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChhhH----HHHHh-cCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHh
Q 010064          172 MLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDLNK----AAIVK-AGAVHKMLKLIESPVAPNPSVSEAIVANFLGL  246 (519)
Q Consensus       172 ~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~nk----~~iv~-aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~L  246 (519)
                      ..+.+..|+..|..-+-+.+..++.+..+|.......+    .-+.. ..++..|+.--.++     ++.-.+-..|...
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~-----eiAl~~G~mLREc  141 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESP-----EIALNCGIMLREC  141 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGST-----TTHHHHHHHHHHH
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCc-----chhhhhhHHHHHH
Confidence            34577888899988889999999999999986533332    22333 24566666655544     4444444456666


Q ss_pred             ccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcC---cHHHHHHHcCCHH--HH
Q 010064          247 SALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFP-SNISFILETD---LIRYLLEMLGDME--LS  320 (519)
Q Consensus       247 S~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~l~~~g---~v~~Lv~lL~~~~--v~  320 (519)
                      ..++.....|..+.-+..+.+.+..    .+.++..+|..++..|.... .....++..+   .+.....+|.++.  ++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtr  217 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEM----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  217 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTC----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHH
Confidence            6666666677777778888888877    79999999999999886544 4444555543   5666677887766  77


Q ss_pred             HHHHHHHHHhcCCcccHHHH---hhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCCh
Q 010064          321 ERILSILSNLVSTPEGRKAI---SRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSY  378 (519)
Q Consensus       321 ~~Al~~L~nLs~~~e~r~~i---~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~  378 (519)
                      ..++..|+.|-.+..+...+   ++...-+..++.+|. +.+..+|-.|..+.-...+.+.
T Consensus       218 RqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLr-d~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhc-CchhhHHHHhhhHhhhhhcCCC
Confidence            89999999999877777665   333566778888888 6789999999988888777644

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.98  E-value=3.1  Score=39.23  Aligned_cols=135  Identities=16%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHhcCCCccHHHHHhc-CcHHHHHHHcCCH--HHHHHHHHHHHHhcCCc---ccHHHHh---------
Q 010064          277 SPQAKQDALRALYNLSIFPSNISFILET-DLIRYLLEMLGDM--ELSERILSILSNLVSTP---EGRKAIS---------  341 (519)
Q Consensus       277 ~~~~~~~A~~aL~nLs~~~~n~~~l~~~-g~v~~Lv~lL~~~--~v~~~Al~~L~nLs~~~---e~r~~i~---------  341 (519)
                      +......++.||..|..+......+++. .++..|+..|.++  .++..|+.+|..|+..+   ++-..+.         
T Consensus        69 d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            4667888999999999887776666655 8899998888654  47888999998888632   2333222         


Q ss_pred             hcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhh------HHHHHHcCcHHHHHHHhhcCCHHHHHHHHHH
Q 010064          342 RVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGD------RQAMIEAGIASALLELTLLGSTLAQKRASRI  411 (519)
Q Consensus       342 ~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~------~~~i~~~G~i~~Ll~Ll~~gs~~~~~~A~~~  411 (519)
                      ...+-+..+++.+....+...+..+...+..|..+.++.      |..+...|..+.+-.+-..+++....+...-
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f  224 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVF  224 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHH
Confidence            124567888888875667788888888888888875532      4556778988887777777788776654444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.21  E-value=7.6  Score=35.94  Aligned_cols=161  Identities=14%  Similarity=0.130  Sum_probs=122.7

Q ss_pred             hhhCCChHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcCCCc-c----HHHHHhc-CcHHHHHHHcCCHHHHHHHHHHHHH
Q 010064          256 IGSSGAVPFLVKTLKNSDKKVSPQAKQDALRALYNLSIFPS-N----ISFILET-DLIRYLLEMLGDMELSERILSILSN  329 (519)
Q Consensus       256 I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~aL~nLs~~~~-n----~~~l~~~-g~v~~Lv~lL~~~~v~~~Al~~L~n  329 (519)
                      +...+.+..|+.-|..    -+.+.+.+++....+|..... .    ...+... .++..|+.--+++++...+=.+|+.
T Consensus        65 ~~~~d~l~~Li~~L~~----L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          65 LYNSGLLSTLVADLQL----IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHSHHHHHHHTGGG----SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCC----CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            3456778888888887    599999999999999987543 2    2334433 4555555555777888888888888


Q ss_pred             hcCCcccHHHHhhcCCcchhhhhhccCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc---CcHHHHHHHhhcCCHHHHH
Q 010064          330 LVSTPEGRKAISRVPDAFPILVDVLNWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEA---GIASALLELTLLGSTLAQK  406 (519)
Q Consensus       330 Ls~~~e~r~~i~~~~g~i~~Lv~lL~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~---G~i~~Ll~Ll~~gs~~~~~  406 (519)
                      ...++...+.+.. ...+..+.+.+. .++-++...|..++-.|-..........+..   -.+...-.|+.+++...|.
T Consensus       141 cik~e~lak~iL~-s~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRHEPLAKIILW-SEQFYDFFRYVE-MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTSHHHHHHHHH-SGGGGHHHHHTT-CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhhHHHHHHHHc-cHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            8888888888887 567778888888 6788999999888887766555555555553   3577778899999999999


Q ss_pred             HHHHHHHHhhhcCCCc
Q 010064          407 RASRILECLRVDKGKQ  422 (519)
Q Consensus       407 ~A~~~L~~l~~~~~~~  422 (519)
                      .+.++|.-+--++...
T Consensus       219 qSlKLLgelLldr~N~  234 (330)
T d1upka_         219 QSLKLLGELLLDRHNF  234 (330)
T ss_dssp             HHHHHHHHHHHSGGGH
T ss_pred             HHHHHHHHHHhhhhHH
Confidence            9999999998765443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.12  E-value=0.2  Score=45.39  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHH-----HHHhcc-ChhhHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHhcCCChh
Q 010064          134 LKIVVKDLQSESEEQRREAASKV-----RSLAKE-NSETRVTLAMLGAIPPLAGMLDFQLADSQISSLYALLNLGIGNDL  207 (519)
Q Consensus       134 l~~Lv~~L~s~~~~~~~~Aa~~L-----~~La~~-~~~~r~~l~~~G~i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~~~~  207 (519)
                      +..|+.+++.+++.++..|+..|     ..|..+ +...|..++..=..+.|..++..++..++..++.           
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~-----------  136 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ-----------  136 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH-----------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh-----------
Confidence            55677788889999999888543     222211 2233433333222344444444445554444432           


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcCCCCCCHHHHHHHHHH
Q 010064          208 NKAAIVKAGAVHKMLKLIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNSDKKVSPQAKQDALRA  287 (519)
Q Consensus       208 nk~~iv~aG~v~~Lv~lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~~~~~~~~~~~~A~~a  287 (519)
                             ....+.|..+++++   +..++..++..                 -..+.|..+++.    .+..++..++..
T Consensus       137 -------~~~~~~L~~L~~D~---d~~VR~~aA~~-----------------~~~~~L~~l~~D----~d~~VR~~aa~~  185 (233)
T d1lrva_         137 -------RIPPGRLFRFMRDE---DRQVRKLVAKR-----------------LPEESLGLMTQD----PEPEVRRIVASR  185 (233)
T ss_dssp             -------HSCGGGGGGTTTCS---CHHHHHHHHHH-----------------SCGGGGGGSTTC----SSHHHHHHHHHH
T ss_pred             -------ccchhHHHHHhcCC---CHHHHHHHHHh-----------------cCHHHHHHHccC----CCHHHHHHHHHh
Confidence                   12234555566666   67776655432                 123445555544    566666666644

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=87.09  E-value=6.6  Score=36.62  Aligned_cols=214  Identities=13%  Similarity=0.072  Sum_probs=120.7

Q ss_pred             HHhcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHHhcCCHHHHHHhhcC----CCHHHHHHHHHHHHH
Q 010064          125 KKKEEALEELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLAMLGAIPPLAGMLDF----QLADSQISSLYALLN  200 (519)
Q Consensus       125 i~~~g~~~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~~~G~i~~Lv~lL~s----~~~~~~~~a~~aL~N  200 (519)
                      +...|..+.+..+.+.+.++..... +|...+..|.........      .+..+..++++    .++.++..+..++++
T Consensus        81 l~~~GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gs  153 (336)
T d1lsha1          81 VPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGS  153 (336)
T ss_dssp             HHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHH
Confidence            3345777778888888876654332 344555555533323333      24556666665    567788888888887


Q ss_pred             hcCCChhhHHHHHhcCcHHHHHH----hhcCCCCCCHHHHHHHHHHHHHhccCCCChhhhhhCCChHHHHHHhhcC---C
Q 010064          201 LGIGNDLNKAAIVKAGAVHKMLK----LIESPVAPNPSVSEAIVANFLGLSALDSNKPIIGSSGAVPFLVKTLKNS---D  273 (519)
Q Consensus       201 La~~~~~nk~~iv~aG~v~~Lv~----lL~s~~~~~~~~~~~a~~aL~~LS~~~~~k~~I~~~gai~~LV~lL~~~---~  273 (519)
                      |......+. .-.....++.+..    .....   +.+-...++.+|.|+..          ...++.|...+...   .
T Consensus       154 lv~~~c~~~-~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~  219 (336)
T d1lsha1         154 LVFRYCANT-VSCPDELLQPLHDLLSQSSDRA---KEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSL  219 (336)
T ss_dssp             HHHHHHTTC-SSCCGGGTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCC
T ss_pred             HHHHHhcCC-CCCcHHHHHHHHHHHHHhhccc---chHHHHHHHHHHhccCC----------HhHHHHHHHHhccccccc
Confidence            773210000 0000112333333    33444   45545555666666642          23467777776542   1


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHc----CCHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064          274 KKVSPQAKQDALRALYNLSIFPSNISFILETDLIRYLLEML----GDMELSERILSILSNLVSTPEGRKAISRVPDAFPI  349 (519)
Q Consensus       274 ~~~~~~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL----~~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~  349 (519)
                      ...+..++..|+++|.++.......       +.+.|..++    .+.+++..|..+|..  ..|.        ...+..
T Consensus       220 ~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~--------~~~l~~  282 (336)
T d1lsha1         220 DEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS--------VALVSM  282 (336)
T ss_dssp             CCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC--------HHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCC--------HHHHHH
Confidence            1246789999999999987654211       112344444    356688778777754  2221        123446


Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHhcC
Q 010064          350 LVDVLNWTDSPGCQEKASYVLMVMAHK  376 (519)
Q Consensus       350 Lv~lL~~s~~~~~qe~A~~~L~nL~~~  376 (519)
                      +...+....+.++.......|.+|+..
T Consensus       283 i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         283 VAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            667776556777777777778888774

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=86.75  E-value=5  Score=37.53  Aligned_cols=244  Identities=13%  Similarity=0.108  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhhHHHHH----hcCC---HHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 010064          132 EELKIVVKDLQSESEEQRREAASKVRSLAKENSETRVTLA----MLGA---IPPLAGMLDFQLADSQISSLYALLNLGIG  204 (519)
Q Consensus       132 ~~l~~Lv~~L~s~~~~~~~~Aa~~L~~La~~~~~~r~~l~----~~G~---i~~Lv~lL~s~~~~~~~~a~~aL~NLa~~  204 (519)
                      ..+-.||+.|..-+.+.-......+    +..+..|..+.    ..|-   +..+.+++.++...-. .+...|..|+..
T Consensus        43 ~kF~~Lv~~lR~~~~e~l~~v~~~~----~~~~~~r~~~lDal~~~GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~  117 (336)
T d1lsha1          43 AKFLRLTAFLRNVDAGVLQSIWHKL----HQQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSN  117 (336)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHH----TTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH----hcChhHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhcc
Confidence            4466888888777654433333322    23344554443    3453   4556666665443322 233444445443


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCC-CCHHHHHHHHHHHHHhc----cC-CCChhhhhhCCChHHHHHHhhcCCCCCCH
Q 010064          205 NDLNKAAIVKAGAVHKMLKLIESPVA-PNPSVSEAIVANFLGLS----AL-DSNKPIIGSSGAVPFLVKTLKNSDKKVSP  278 (519)
Q Consensus       205 ~~~nk~~iv~aG~v~~Lv~lL~s~~~-~~~~~~~~a~~aL~~LS----~~-~~~k~~I~~~gai~~LV~lL~~~~~~~~~  278 (519)
                      ..+++.      .+..+..+++++.. .++.+...++-++.+|.    .. +....     ..++.+...+.......+.
T Consensus       118 ~~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~  186 (336)
T d1lsha1         118 QQATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKE  186 (336)
T ss_dssp             CCCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCH
T ss_pred             CCCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccch
Confidence            333333      33555566654210 04566666654444443    12 22222     2344444444321111577


Q ss_pred             HHHHHHHHHHHHhcCCCccHHHHHhcCcHHHHHHHcC---------CHHHHHHHHHHHHHhcCCcccHHHHhhcCCcchh
Q 010064          279 QAKQDALRALYNLSIFPSNISFILETDLIRYLLEMLG---------DMELSERILSILSNLVSTPEGRKAISRVPDAFPI  349 (519)
Q Consensus       279 ~~~~~A~~aL~nLs~~~~n~~~l~~~g~v~~Lv~lL~---------~~~v~~~Al~~L~nLs~~~e~r~~i~~~~g~i~~  349 (519)
                      +-+..++.+|.|+-. +         ..++.|..++.         +..++..|+++|.+++....  ..+..      .
T Consensus       187 ~~~~~~LkaLGN~g~-p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p--~~v~~------~  248 (336)
T d1lsha1         187 EEIVLALKALGNAGQ-P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP--RKVQE------I  248 (336)
T ss_dssp             HHHHHHHHHHHHHTC-G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH--HHHHH------H
T ss_pred             HHHHHHHHHHhccCC-H---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCc--HHHHH------H
Confidence            778889999999863 2         24556666662         23488999999998876421  11212      3


Q ss_pred             hhhhc-cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhhcC
Q 010064          350 LVDVL-NWTDSPGCQEKASYVLMVMAHKSYGDRQAMIEAGIASALLELTL-LGSTLAQKRASRILECLRVDK  419 (519)
Q Consensus       350 Lv~lL-~~s~~~~~qe~A~~~L~nL~~~~~~~~~~i~~~G~i~~Ll~Ll~-~gs~~~~~~A~~~L~~l~~~~  419 (519)
                      +..++ +...+++++-.|+.+|+. |.-+..         .+..+...+. +.+..+.......|.++.+..
T Consensus       249 l~~i~~n~~e~~EvRiaA~~~lm~-t~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         249 VLPIFLNVAIKSELRIRSCIVFFE-SKPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHHH-TCCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHh-cCCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            33333 224567888777777755 332233         2334444443 457777777777777777543