Citrus Sinensis ID: 010072

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
ccEEEEEEEccccEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHcccccccccccccc
cEEEEEEEEccccEEEEcccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHEEEHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHccccccccccccc
mqmnleyfaidsqgfvtdDERALEELfgdeensrrgdACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSienfpqtetcdllildrsvdqvapIIHEWTYDAICRDLLNMEgnkyvhevpsktggppekkevllEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHsardggelsTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFttnedvsrENKLRLLMILAAIypekfqgekgQNIMKLARLqsdditavnnmrllggasdikksstgafslkfdinkkkravrkdrtgeeqtwqLSRFYPMIEELIEKLgkrelpkddypcmnepsptvhaknqsaaisqppvahsmrsrrtptwarprnsddgyssdsvLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIilgstslddppqfITKMKMLtvdelslddiqi
MQMNLEYFaidsqgfvtDDERALEElfgdeensrrgDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVhevpsktggppeKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFfttnedvsrenKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLggasdikksstgafslkfdinkkkravrkdrtgeeqtwqlsrfyPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAisqppvahsmrsrrtptwarprnsddgyssDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKlnreiilgstslddppqfITKMKMltvdelslddiqi
MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIrelrlrelgqleqdlVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
*****EYFAIDSQGFVTD*****************GDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVH***************LLEEHDPLWLELRHAHIA*******************************************LPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGG***********FSLKFD*****************TWQLSRFYPMIEELIEKL**********************************************************************KMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTV**********
MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSL****MT*FSDLIPTKLAAGVWNCLM***********TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKY******************LEEHDPLWLELRHAHIADASERLHEKMTS************************LQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLL*************************************WQLSRFYPMIEELIEKLGKRELPKDDYPCMNEP***********************************************************IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM*************
MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHE*********EKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFIS*****************STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKK***********QTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPS*******************************************VLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAA***********LSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDI*****************************QTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEP*******************************************************MGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLD*I**
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MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query519 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.994 0.774 0.791 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.990 0.776 0.707 0.0
Q7XWP3665 Probable protein transpor yes no 0.990 0.772 0.673 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.957 0.738 0.667 0.0
Q5VNU3659 Probable protein transpor no no 0.971 0.764 0.604 0.0
Q54QC8598 Protein transport protein yes no 0.859 0.745 0.288 2e-48
Q64324593 Syntaxin-binding protein yes no 0.838 0.733 0.275 2e-42
Q15833593 Syntaxin-binding protein yes no 0.830 0.726 0.273 2e-41
Q62753594 Syntaxin-binding protein yes no 0.857 0.749 0.274 1e-40
Q28288593 Syntaxin-binding protein yes no 0.853 0.747 0.266 1e-39
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/522 (79%), Positives = 468/522 (89%), Gaps = 6/522 (1%)

Query: 2   QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
           +MNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIATVFASLREFP VR
Sbjct: 147 EMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAVR 206

Query: 62  YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVA 121
           YRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQTETC+LLILDRS+DQ+A
Sbjct: 207 YRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIA 266

Query: 122 PIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADA 181
           P+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEEHDP+WLELRHAHIADA
Sbjct: 267 PVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIADA 326

Query: 182 SERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG 241
           SERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQYS+QIDKLSLHVEIA 
Sbjct: 327 SERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIAR 385

Query: 242 KINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEK 301
           K+N +IRE  LRELGQLEQDLVFGDAG+KDV+K+ +T E+ SRE KLRLLMILA IYPEK
Sbjct: 386 KLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEK 445

Query: 302 FQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDR 361
           F+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD++KKKRAVRK+R
Sbjct: 446 FEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKER 505

Query: 362 TGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHA---KNQSAAISQPPV 418
             EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H     + +A+ SQ   
Sbjct: 506 Q-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQA 564

Query: 419 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHK 478
           A SMRSRRTPTWA+PR SDDGYSSDSVLRHASSDF+KMGQRIFVFIVGGATRSEL+VCHK
Sbjct: 565 AQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHK 624

Query: 479 LTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 519
           L+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct: 625 LSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q62753|STXB2_RAT Syntaxin-binding protein 2 OS=Rattus norvegicus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
224125086 666 predicted protein [Populus trichocarpa] 0.998 0.777 0.826 0.0
224071599 666 predicted protein [Populus trichocarpa] 0.998 0.777 0.815 0.0
356514152 665 PREDICTED: SNARE-interacting protein KEU 0.998 0.778 0.787 0.0
356563274 666 PREDICTED: SNARE-interacting protein KEU 0.998 0.777 0.785 0.0
449442403 664 PREDICTED: SNARE-interacting protein KEU 0.998 0.780 0.795 0.0
356563276 671 PREDICTED: SNARE-interacting protein KEU 0.998 0.771 0.778 0.0
357477033 666 SNARE-interacting protein KEULE [Medicag 0.996 0.776 0.780 0.0
225448938 753 PREDICTED: SNARE-interacting protein KEU 0.996 0.686 0.794 0.0
296085966 736 unnamed protein product [Vitis vinifera] 0.996 0.702 0.794 0.0
255537107 663 plant sec1, putative [Ricinus communis] 0.994 0.778 0.788 0.0
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/519 (82%), Positives = 474/519 (91%), Gaps = 1/519 (0%)

Query: 2   QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
           +MNLEYFAIDSQGF+TD+ERALEELF DEE+SR+GDACLNVMASRIATVFASLREFP VR
Sbjct: 148 EMNLEYFAIDSQGFITDNERALEELFVDEEDSRKGDACLNVMASRIATVFASLREFPFVR 207

Query: 62  YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVA 121
           YRAAKSLD  TMTTF DLIPTKLAA +W+CL++YKQ  E+FPQTETC+LLILDRS+DQ+A
Sbjct: 208 YRAAKSLDVTTMTTFRDLIPTKLAARIWDCLIQYKQKTEHFPQTETCELLILDRSIDQIA 267

Query: 122 PIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADA 181
           PIIHEWTYDA+C DLLNMEGNKYVHEV SK GGPPEKK+VLLEEHDP+WLELRHAHIADA
Sbjct: 268 PIIHEWTYDAMCHDLLNMEGNKYVHEVLSKAGGPPEKKDVLLEEHDPVWLELRHAHIADA 327

Query: 182 SERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG 241
           SERLHEKMT+F+SKNKAA+IQH +RDGGELST+DLQ+MVQALPQYS+QIDK+SLHVEIAG
Sbjct: 328 SERLHEKMTNFVSKNKAAKIQHGSRDGGELSTRDLQQMVQALPQYSEQIDKISLHVEIAG 387

Query: 242 KINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEK 301
           KIN+IIRE  LRELGQLEQDLVFGDAG+ DV+KF TT ED +RENKLRLLMILAAIYPEK
Sbjct: 388 KINRIIRESGLRELGQLEQDLVFGDAGMTDVIKFLTTKEDATRENKLRLLMILAAIYPEK 447

Query: 302 FQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDR 361
           F+GE+G NIMK+ RL  DD+ AVNNMRLL  AS+ KKSSTGAFSLKFDI+KKKRA RKDR
Sbjct: 448 FEGEEGHNIMKVVRLPQDDMNAVNNMRLLAVASETKKSSTGAFSLKFDIHKKKRAARKDR 507

Query: 362 TG-EEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAH 420
           TG EE TWQLSRFYPMIEELI+KL K EL KD+YPCMN+PSPT H  +QS  + Q P  H
Sbjct: 508 TGAEETTWQLSRFYPMIEELIDKLNKGELSKDEYPCMNDPSPTFHGTSQSTPMHQAPAPH 567

Query: 421 SMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLT 480
           SMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLT
Sbjct: 568 SMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLT 627

Query: 481 RKLNREIILGSTSLDDPPQFITKMKMLTVDELSLDDIQI 519
            KL RE+ILGS+SLDDPP FITK+K+LT +ELSLDD+QI
Sbjct: 628 SKLQREVILGSSSLDDPPHFITKLKLLTANELSLDDLQI 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449442403|ref|XP_004138971.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] gi|449505029|ref|XP_004162356.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085966|emb|CBI31407.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query519
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.994 0.774 0.766 5.7e-217
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.990 0.776 0.686 5.3e-191
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.965 0.744 0.641 3.5e-178
DICTYBASE|DDB_G0283937598 sec1 "Sec1-like family protein 0.724 0.628 0.285 3.9e-44
RGD|619967594 Stxbp2 "syntaxin binding prote 0.699 0.611 0.284 1.9e-39
UNIPROTKB|Q62753594 Stxbp2 "Syntaxin-binding prote 0.699 0.611 0.284 1.9e-39
MGI|MGI:107370593 Stxbp2 "syntaxin binding prote 0.699 0.612 0.282 1.8e-38
UNIPROTKB|Q5RE92593 DKFZp469D0239 "Putative unchar 0.703 0.615 0.281 4.8e-38
ZFIN|ZDB-GENE-050626-106591 stxbp1a "syntaxin binding prot 0.701 0.615 0.277 6.6e-38
UNIPROTKB|Q15833593 STXBP2 "Syntaxin-binding prote 0.703 0.615 0.281 9.9e-38
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2096 (742.9 bits), Expect = 5.7e-217, P = 5.7e-217
 Identities = 400/522 (76%), Positives = 455/522 (87%)

Query:     2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
             +MNLE+FAIDSQGF+TD ERALE+LFGDEE SR+GDACLNVMASRIATVFASLREFP VR
Sbjct:   147 EMNLEFFAIDSQGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAVR 206

Query:    62 YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVA 121
             YRAAKSLD  TMTT  DLIPTKLAAG+WNCL K+KQSIENFPQTETC+LLILDRS+DQ+A
Sbjct:   207 YRAAKSLDASTMTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIA 266

Query:   122 PIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADA 181
             P+IHEWTYDA+C DLLNMEGNKYVH +PSK+GG PEKK+VLLEEHDP+WLELRHAHIADA
Sbjct:   267 PVIHEWTYDAMCHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIADA 326

Query:   182 SERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG 241
             SERLH+KMT+F+SKNKAAQ+Q   RDG ELST+DLQKMVQALPQYS+QIDKLSLHVEIA 
Sbjct:   327 SERLHDKMTNFLSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIAR 385

Query:   242 KINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEK 301
             K+N +I               VFGDAG+KDV+K+ +T E+ SRE KLRLLMILA IYPEK
Sbjct:   386 KLNDLIREQGLRELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEK 445

Query:   302 FQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDR 361
             F+GEKGQN+MKLA+L SDD+TAVNNM LLG A D KK++ G F+LKFD++KKKRAVRK+R
Sbjct:   446 FEGEKGQNLMKLAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKER 505

Query:   362 TGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAK---NQSAAISQPPV 418
               EE  WQLSRFYPMIEELIEKL K ELPK+D+PCMN+PSP+ H     + +A+ SQ   
Sbjct:   506 Q-EEAAWQLSRFYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQA 564

Query:   419 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHK 478
             A SMRSRRTPTWA+PR SDDGYSSDSVLRHASSDF+KMGQRIFVFIVGGATRSEL+VCHK
Sbjct:   565 AQSMRSRRTPTWAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHK 624

Query:   479 LTRKLNREIILGSTSLDDPPQFITKMKMLTV-DELSLDDIQI 519
             L+ KL RE+ILGSTSLDDPPQFITK+K+LT  D+LSLDD+QI
Sbjct:   625 LSTKLKREVILGSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283937 sec1 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|619967 Stxbp2 "syntaxin binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62753 Stxbp2 "Syntaxin-binding protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107370 Stxbp2 "syntaxin binding protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RE92 DKFZp469D0239 "Putative uncharacterized protein DKFZp469D0239" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050626-106 stxbp1a "syntaxin binding protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q15833 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XWP3SEC1A_ORYSJNo assigned EC number0.67360.99030.7729yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.79110.99420.7747yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1270009
hypothetical protein (666 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
pfam00995554 pfam00995, Sec1, Sec1 family 1e-100
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 3e-36
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  313 bits (803), Expect = e-100
 Identities = 134/507 (26%), Positives = 240/507 (47%), Gaps = 60/507 (11%)

Query: 3   MNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRY 62
           + L++  ++S  F  +   +  +L+    +    ++ L  +A  + ++  +L E P++RY
Sbjct: 103 IYLDFIPLESDLFSLELPNSFRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRY 158

Query: 63  RAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP-QTETCDLLILDRSVDQVA 121
           +             ++ +  KLA  +   L  +     + P       LLILDRS+D + 
Sbjct: 159 QGNS---------AAERLAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLIT 209

Query: 122 PIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADA 181
           P++H+WTY A+  DLL ++ N+    + +   G   KKEV+L+E+DP W+E RH H  D 
Sbjct: 210 PLLHQWTYQAMVHDLLGIKNNRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDV 267

Query: 182 SERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG 241
           +E++ +++  +  +NK +  +       + S  DL++ V+ LP++  +  KLSLH+ +A 
Sbjct: 268 AEKIKKELKEYKEENKNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAE 320

Query: 242 KINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFT--TNEDVSRENKLRLLMILAAIYP 299
           ++ K I+E +L ++ +LEQDL  G    K          N  V  E+KLRLL++ +    
Sbjct: 321 ELMKQIKERKLDKVSELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDG 380

Query: 300 EK-FQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVR 358
            K    E  + ++  A +  + +  V N+  LGG   + ++S   FS   D  K      
Sbjct: 381 GKGKDLEDLRKLLLHAGIGPEALNLVKNLEQLGGL--LSRTSGSNFSDLRDKLKLLVKEV 438

Query: 359 KDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 418
                +     LSR+ P+++ ++E L K +L  D YP  +                    
Sbjct: 439 SKSLPKGVKNVLSRYKPLLKRILEDLIKGKLDTDSYPYFDPKLANA-----------SGP 487

Query: 419 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHK 478
             S+RS+R     + R                       QRI VF+VGG T SE R  ++
Sbjct: 488 QGSLRSKRPTAAGQGRQP--------------------PQRIIVFVVGGVTYSEARALYE 527

Query: 479 LTRKLN-REIILGSTSLDDPPQFITKM 504
           L++K N + +I+GSTS+ +P  F+ ++
Sbjct: 528 LSKKTNGKRVIIGSTSILNPESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 519
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-79  Score=624.73  Aligned_cols=451  Identities=42%  Similarity=0.656  Sum_probs=381.1

Q ss_pred             ceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccchH
Q 010072            2 QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIP   81 (519)
Q Consensus         2 E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i~   81 (519)
                      |+|++|+|+|+++|+++.|++|..+|.+. +.......++.+|++|++||+++|++|.|||++.....+       ..+|
T Consensus       127 einl~F~p~ESqvF~~~~~~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~  198 (593)
T KOG1300|consen  127 EINLAFIPYESQVFTLDSPDAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELA  198 (593)
T ss_pred             ecccccceecceeeeecChhhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHH
Confidence            78999999999999999999999999965 566778899999999999999999999999998865443       2689


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCCCCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCcceeE
Q 010072           82 TKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEV  161 (519)
Q Consensus        82 ~~la~~l~~~l~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~~k~~  161 (519)
                      +++|..+++.+..++...+.+|..+++.|||+||++|+++||||+||||||+||+++|++|+|.++.+...|+  +++++
T Consensus       199 ~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~v  276 (593)
T KOG1300|consen  199 QKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEV  276 (593)
T ss_pred             HHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--cccee
Confidence            9999999999998886666777777999999999999999999999999999999999999999987655553  37889


Q ss_pred             eCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Q 010072          162 LLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG  241 (519)
Q Consensus       162 ~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~  241 (519)
                      +|+++|++|-++||+||++|.+.|++.+++|.++++..+.     +++..|+.|+.++|++||+|+++..+++.|++||+
T Consensus       277 llde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~  351 (593)
T KOG1300|consen  277 LLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAE  351 (593)
T ss_pred             ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988765433     23457999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhcCCC-chH-------HHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 010072          242 KINKIIRELRLRELGQLEQDLVFGDA-GLK-------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKL  313 (519)
Q Consensus       242 ~i~~~~~~~~l~~~~~lEq~i~~g~~-~~~-------~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~llq~  313 (519)
                      +|++.++. .+.+++.+||++++|.+ ..+       .+++.+. ....+..||+|++++|.+. .+|+...++.+|+++
T Consensus       352 eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~  428 (593)
T KOG1300|consen  352 ECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQH  428 (593)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcc
Confidence            99999987 99999999999999954 222       3344444 4789999999999999998 479999999999999


Q ss_pred             hCCChhHHHHHHHHHHhcCccccCCCCCCCCCcchhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhcCCCCCCC
Q 010072          314 ARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDD  393 (519)
Q Consensus       314 ~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~~~l~~~~  393 (519)
                      .|++.++..++.|+..+|.....     +.+...|     ..+.+++|. .+..|.+|||+|.++.|+|++++++|+++.
T Consensus       429 ~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~k~-----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~  497 (593)
T KOG1300|consen  429 AGISVEEMQIIQNLHILGVPVTK-----DSFLLKF-----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKH  497 (593)
T ss_pred             cCCCchHHHHHhhHHHhCCcccc-----CcccccC-----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhh
Confidence            99999999999999999987652     2222221     122245664 789999999999999999999999999999


Q ss_pred             CCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCCCHHHH
Q 010072          394 YPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSEL  473 (519)
Q Consensus       394 ~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTy~Ei  473 (519)
                      |||+++++....|             ....+.|++.|.+.+...              .....++++|||||||+||+|+
T Consensus       498 fp~~~~~s~~~~~-------------~~~~Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEm  550 (593)
T KOG1300|consen  498 FPYLNDTSETSSG-------------SAATSARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEM  550 (593)
T ss_pred             CccccCCcccccc-------------CccccccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHH
Confidence            9999876622111             112233444555433321              1234789999999999999999


Q ss_pred             HHHHHHHhhcCCeEEEccccccChhHHHHHHhccC
Q 010072          474 RVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLT  508 (519)
Q Consensus       474 ~al~~l~~~~~~~iiigsT~I~~~~~fl~~l~~l~  508 (519)
                      |++|+++++.+++|+||||+|++|.+||+.|+.+.
T Consensus       551 RvaYevs~~~~~EViiGS~~iltP~~fL~~lk~~~  585 (593)
T KOG1300|consen  551 RVAYEVSEKLNREVIIGSDHILTPTKFLDDLKLLK  585 (593)
T ss_pred             HHHHHHHHhhCceEEECCcccCCHHHHHHHHhhcc
Confidence            99999999999999999999999999999999443

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 9e-38
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 1e-37
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 2e-37
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-34
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 6e-33
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 1e-31
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 2e-07
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (390), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 248/519 (47%), Gaps = 78/519 (15%)
Query: 2   QMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVR 61
           ++N+ +   +SQ +  D   + +  +   + ++  +  L  +A +IAT+ A+L+E+P VR
Sbjct: 144 EINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVR 202
Query: 62  YRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTETCDLLILDRSVD 118
           YR     + +     + LI  KL A        YK    ++   P      LLILDR  D
Sbjct: 203 YRGEYKDNAL----LAQLIQDKLDA--------YKADDPTMGEGPDKARSQLLILDRGFD 250
Query: 119 QVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHI 178
             +P++HE T+ A+  DLL +E + Y +E  +   G    KEVLL+E D LW+ LRH HI
Sbjct: 251 PSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHI 308
Query: 179 ADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVE 238
           A+ S+ +   +  F S  +          G + + +DL +M++ +PQY  ++ K S H+ 
Sbjct: 309 AEVSQEVTRSLKDFSSSKR-------MNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLH 361
Query: 239 IA--------GKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRL 290
           +A        G ++K+                   D  ++ +V     + +VS  +K+R+
Sbjct: 362 LAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDP-MRAIVPIL-LDANVSTYDKIRI 419
Query: 291 LMILAAIYPEKFQGEKGQN-IMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFD 349
             IL  I+ +    E+  N +++ A++  +D   + NM  LG    I   ST        
Sbjct: 420 --ILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVP--IVTDST-------- 467
Query: 350 INKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQ 409
           + ++ +  RK+R   EQT+QLSR+ P+I++++E   + +L    YP ++  S        
Sbjct: 468 LRRRSKPERKERIS-EQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRS-------- 518
Query: 410 SAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 469
           SA+ S   V     S R   W + +              A  +++  G R+ +FI+GG +
Sbjct: 519 SASFSTTAV-----SARYGHWHKNK--------------APGEYRS-GPRLIIFILGGVS 558
Query: 470 RSELRVCHKLTRKLNR-EIILGSTSLDDPPQFITKMKML 507
            +E+R  +++T+   + E+++GST +  P + +  +K L
Sbjct: 559 LNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 597
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query519
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 7e-93
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 9e-78
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 2e-77
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 3e-77
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 1e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  295 bits (756), Expect = 7e-93
 Identities = 111/525 (21%), Positives = 241/525 (45%), Gaps = 42/525 (8%)

Query: 3   MNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRY 62
           +N  +   + + F  ++   L + +G   +S      ++ +  R++T+  ++   P+VRY
Sbjct: 129 INTLFIPKEHRVFTLNEPHGLVQYYGSRSSS----YNIDHLVRRLSTLCTTMNVAPIVRY 184

Query: 63  RAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAP 122
            +  +  T  M   +  +  ++   V   L+  ++             LILDR+VD  +P
Sbjct: 185 SSTSTPGTERM---AMQLQKEIDMSVSQGLINAREG------KLKSQFLILDRAVDLKSP 235

Query: 123 IIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADAS 182
           ++HE TY A   DLLN+E + Y +      GG  ++++V+L E D +WL++RH HI++  
Sbjct: 236 LVHELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVF 294

Query: 183 ERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 242
            ++      F    +  Q    ++ G E     L++M++ LPQ+ +Q+ K SLH++++  
Sbjct: 295 RKVKSSFDEFCVSARRLQGLRDSQQG-EGGAGALKQMLKDLPQHREQMQKYSLHLDMSNA 353

Query: 243 INKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFT-------TNEDVSRENKLRLLMILA 295
           IN       +    + EQ++V  +    + V+ F         +  VS E+KLR LM+  
Sbjct: 354 INMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCV 412

Query: 296 AIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKR 355
            +        +  N++  A + +   +A+ N+ +LG      +             + ++
Sbjct: 413 -LAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR-------------RGRK 458

Query: 356 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQ 415
                R   +  + LSR+ P++++L+E +   +L  + YP + +    V  K  S ++ +
Sbjct: 459 PKTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEE 518

Query: 416 PPVAHSMRSRRTPTWARPRNSDDGYSSDSVL-----RHASSDFKKMGQRIFVFIVGGATR 470
                +  +R+   WA+ + ++    S           A+   +    ++FVFI G  + 
Sbjct: 519 DDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSY 578

Query: 471 SELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKMLTVDELSLD 515
           +E+R  +++++    E+ +G+ ++  P +F+  + +L   +  + 
Sbjct: 579 NEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKADQDVQ 623
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=2.7e-83  Score=697.13  Aligned_cols=447  Identities=28%  Similarity=0.520  Sum_probs=357.0

Q ss_pred             CceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccch
Q 010072            1 MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLI   80 (519)
Q Consensus         1 ~E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i   80 (519)
                      .|+++||+|+|+++|||++|++|..+|.++. ..+....++++|++|++||.++|.+|.|||+|+.            ..
T Consensus       131 ~e~~ldfiple~dlFsL~~p~~f~~l~~~~~-~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~  197 (594)
T 1dn1_A          131 TEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KD  197 (594)
T ss_dssp             EECCCCSEEEETTEEECCCTTHHHHHHCGGG-TTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HH
T ss_pred             heeeeeeEEccCCEEEecCcchHHHHhCCcc-cccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hH
Confidence            3899999999999999999999999999543 2244789999999999999999999999998874            24


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCC---CCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCc
Q 010072           81 PTKLAAGVWNCLMKYKQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPE  157 (519)
Q Consensus        81 ~~~la~~l~~~l~~~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~  157 (519)
                      |+++|+.+++.|.++...++.++   ..++++|||+||++|++|||+||||||||+||+|||++|+|+++.+.  .+..+
T Consensus       198 ~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~  275 (594)
T 1dn1_A          198 NALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEAR  275 (594)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCE
T ss_pred             HHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCcc
Confidence            77899999988888765444432   23478999999999999999999999999999999999999998632  12345


Q ss_pred             ceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHH
Q 010072          158 KKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHV  237 (519)
Q Consensus       158 ~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~  237 (519)
                      ++++.|+++|+||.++||+||++|++.|.+++++|+++++..       .++..+++||++||++||+|+++++.+++|+
T Consensus       276 ~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~  348 (594)
T 1dn1_A          276 VKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHL  348 (594)
T ss_dssp             EEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHH
T ss_pred             ceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999998764321       1245678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCc--------hHHHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhHHH
Q 010072          238 EIAGKINKIIRELRLRELGQLEQDLVFGDAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQN  309 (519)
Q Consensus       238 ~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~  309 (519)
                      +||++|++.+++ .|++++++||++++|.+.        .+.+.++|. ++.++.+|||||+|||+|++ +|++++++.+
T Consensus       349 ~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~  425 (594)
T 1dn1_A          349 HLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNK  425 (594)
T ss_dssp             HHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHH
Confidence            999999999987 899999999999998642        234566776 57899999999999999997 6899999999


Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCccccCCCCCCCCCcchhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhcCCC
Q 010072          310 IMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKREL  389 (519)
Q Consensus       310 llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~~~l  389 (519)
                      +++++|++.+++.++.||+++|+...+...          ..+.+.+.++.+ +.++.|.+|||+|++++++|++++|+|
T Consensus       426 L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~----------~~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L  494 (594)
T 1dn1_A          426 LIQHAQIPPEDSEIITNMAHLGVPIVTDST----------LRRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKL  494 (594)
T ss_dssp             HHHHHTCCHHHHHHHHHGGGGTCCCBCCCG----------GGCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCS
T ss_pred             HHHHcCCCHHHHHHHHHHHHhCCccccccc----------cccccccccccC-CCCccceeeccchHHHHHHHHHHhCCC
Confidence            999999999999999999999987542211          011122233333 578999999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCCC
Q 010072          390 PKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT  469 (519)
Q Consensus       390 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvT  469 (519)
                      +++.|||+.++++...+             .+..+.|+++|++.+.+.+               ...++++|||||||+|
T Consensus       495 ~~~~fP~~~~~~~~~~~-------------~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~T  546 (594)
T 1dn1_A          495 DTKHYPYISTRSSASFS-------------TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVS  546 (594)
T ss_dssp             CTTTSCCSSCC------------------------------------------------------CCCCEEEEEEETCEE
T ss_pred             CcccCCccCCCCCcccc-------------ccccccccccccccCCccc---------------cccCCcEEEEEeCCcc
Confidence            99999999765421100             1122345578986543211               1357899999999999


Q ss_pred             HHHHHHHHHHHhhc-CCeEEEccccccChhHHHHHHhccCCCC
Q 010072          470 RSELRVCHKLTRKL-NREIILGSTSLDDPPQFITKMKMLTVDE  511 (519)
Q Consensus       470 y~Ei~al~~l~~~~-~~~iiigsT~I~~~~~fl~~l~~l~~~~  511 (519)
                      |+|+|++|++++.. |++|+||||+|+||.+||++|+.|+.+.
T Consensus       547 y~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l~~~~  589 (594)
T 1dn1_A          547 LNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTD  589 (594)
T ss_dssp             HHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCS
T ss_pred             HHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCCc
Confidence            99999999999986 4999999999999999999999998765
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 519
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 3e-90
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 6e-87
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 7e-85
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  286 bits (732), Expect = 3e-90
 Identities = 126/515 (24%), Positives = 237/515 (46%), Gaps = 64/515 (12%)

Query: 3   MNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRY 62
           +N+ +   +SQ F  D     +  + +   ++ G       A +IAT+ A+L E+P VRY
Sbjct: 129 INIAFLPYESQIFSLDSPDTFQVYY-NPSRAQGGIPNKERCAEQIATLCATLGEYPSVRY 187

Query: 63  RAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAP 122
           R+    D     +F+ L+  KL     +       ++   PQ +   LLILDR  D ++P
Sbjct: 188 RS----DFDENASFAQLVQQKL-----DAYRADDPTMGEGPQKDRSQLLILDRGFDPISP 238

Query: 123 IIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADAS 182
           ++HE T+ A+  DLL +E + Y  +  +  G    +KEVLL+E D LW+E+RH HIA  S
Sbjct: 239 LLHELTFQAMAYDLLPIENDVY--KYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVS 296

Query: 183 ERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 242
           + + +K+  F  + +            +   KDL +M++ +PQY  ++ K S H+ +A  
Sbjct: 297 QNVTKKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAED 350

Query: 243 INKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTT-------NEDVSRENKLRLLMILA 295
             K  ++  + +L ++EQDL  G     + ++           ++ +S  +K+R++++  
Sbjct: 351 CMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLY- 408

Query: 296 AIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKR 355
            I+      E    +++ A + +++   +N+M+ LG                   N+K+R
Sbjct: 409 IIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKER 468

Query: 356 AVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQ 415
                    + T+Q+SR+ P +++++E   + +L    YP +N   P             
Sbjct: 469 -------QADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR------------ 509

Query: 416 PPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRV 475
            P      S R   W + +                    K G R+ +F+VGG + SE+R 
Sbjct: 510 -PSCQQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRS 553

Query: 476 CHKLTRKL--NREIILGSTSLDDPPQFITKMKMLT 508
            +++T+    N E+ILGST +  P   +  ++ ++
Sbjct: 554 AYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKIS 588
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query519
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-75  Score=636.83  Aligned_cols=447  Identities=28%  Similarity=0.512  Sum_probs=355.2

Q ss_pred             CceeeeeeecCCCeEEeCCCcchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCCCceEEEecCCCcccccccccccch
Q 010072            1 MQMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLI   80 (519)
Q Consensus         1 ~E~~~df~~ld~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~~~~~~~~~i   80 (519)
                      .|+++||+|+|+|+|||++|++|..+|.+++ .....+.+++||++|+++|.++|.+|.|||+|+++            .
T Consensus       128 ~e~~~df~~le~d~fsl~~~~~~~~~~~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~------------~  194 (589)
T d1dn1a_         128 TEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEYK------------D  194 (589)
T ss_dssp             EECCCCSEEEETTEEECCCTTHHHHHHCGGG-TTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSH------------H
T ss_pred             EEEecceeeCCCCEEEecCCchHHHhcCCcc-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCch------------H
Confidence            3899999999999999999999999998654 23446889999999999999999999999998752            5


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCC---CCCCeeEEEecCCCCccccchhhhhhhHHHhhhcccCCCeEEeeccCCCCCCCc
Q 010072           81 PTKLAAGVWNCLMKYKQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPE  157 (519)
Q Consensus        81 ~~~la~~l~~~l~~~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqall~dl~~I~~~~v~~~~~~~~g~~~~  157 (519)
                      |+++|+++++++..+.++.+.++   ..++++|||+||++|++|||+|||||||||||+|||++|.|+++.+..  +..+
T Consensus       195 ~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYq~li~e~~gI~~n~v~i~~~~~--~~~~  272 (589)
T d1dn1a_         195 NALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEAR  272 (589)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECSS--SSCE
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCccccccccccccHHHHHHHHhcccCCeEEecCCCC--Cccc
Confidence            78899999999888876554442   234789999999999999999999999999999999999999986422  1244


Q ss_pred             ceeEeCCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHhhHHHhhhhcccCCCCCCHHHHHHHHHhCcchHHHHHHHHHHH
Q 010072          158 KKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHV  237 (519)
Q Consensus       158 ~k~~~l~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~l~~H~  237 (519)
                      .+.+.++.+|+||.++||+||++|++.|.+++++++++++.       ..++..++++|+++|+++|+++++++.++.|+
T Consensus       273 ~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~-------~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~  345 (589)
T d1dn1a_         273 VKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHL  345 (589)
T ss_dssp             EEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHH
T ss_pred             ceEeecCCCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhh-------hccccccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999876431       12234678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhcCCCc--------hHHHHHhhhcCCCCChhhHHHHHHHHHHHcCCCCCchhHHH
Q 010072          238 EIAGKINKIIRELRLRELGQLEQDLVFGDAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQN  309 (519)
Q Consensus       238 ~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~g~~~~~~~~  309 (519)
                      +|+++|++.++ +++++++++||++++|.+.        ...+++++. +..++.+|+|||+|||++++ +|++++++++
T Consensus       346 ~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~  422 (589)
T d1dn1a_         346 HLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNK  422 (589)
T ss_dssp             HHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHH
Confidence            99999999995 7899999999999987642        245677776 57889999999999999998 6999999999


Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCccccCCCCCCCCCcchhhhhhhhcccccCCCCccccccccchHHHHHHHHHHhcCCC
Q 010072          310 IMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKREL  389 (519)
Q Consensus       310 llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pl~~~lve~~~~~~l  389 (519)
                      +++.++++.+++.++.+|+.+|....+...    .      .+......+. ...+.+|+++||+|+++++++.+.++.+
T Consensus       423 l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~----~------~~~~~~~~~~-~~~~~~~~~s~y~Pl~~~l~~~~~~~~l  491 (589)
T d1dn1a_         423 LIQHAQIPPEDSEIITNMAHLGVPIVTDST----L------RRRSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKL  491 (589)
T ss_dssp             HHHHHTCCHHHHHHHHHGGGGTCCCBCCCG----G------GCCCCCCCCC-CCCSCCCTTCCCCCHHHHHHHHHHTTCS
T ss_pred             HHHHcCCChHHHHHHHHHHHhCCccccCch----h------hccccccccc-CCcccccccccchHHHHHHHHHHHhCCC
Confidence            999999998999999999999987653211    0      0011111111 2567889999999999999999999999


Q ss_pred             CCCCCCCcCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCCC
Q 010072          390 PKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT  469 (519)
Q Consensus       390 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvT  469 (519)
                      +++.||++........+.             +....+.+.|.++..+.               ....+++||||||||||
T Consensus       492 ~~~~~p~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~---------------~~~~~~~viVF~vGGvT  543 (589)
T d1dn1a_         492 DTKHYPYISTRSSASFST-------------TAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVS  543 (589)
T ss_dssp             CTTTSCCSSCC------------------------------------------------------CCCCEEEEEEETCEE
T ss_pred             CcccCcccCCCccccccc-------------cccccccccccccCCCC---------------cCCCCCEEEEEEECCcC
Confidence            999999987544221110             11111223444322211               11356899999999999


Q ss_pred             HHHHHHHHHHHhhcC-CeEEEccccccChhHHHHHHhccCCCC
Q 010072          470 RSELRVCHKLTRKLN-REIILGSTSLDDPPQFITKMKMLTVDE  511 (519)
Q Consensus       470 y~Ei~al~~l~~~~~-~~iiigsT~I~~~~~fl~~l~~l~~~~  511 (519)
                      |+|+++||+|+++.| ++|+||||+|+||++||++|++|++++
T Consensus       544 y~E~~~l~~l~~~~~~~~iiiGsT~iln~~~fl~~l~~L~~~~  586 (589)
T d1dn1a_         544 LNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTD  586 (589)
T ss_dssp             HHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCS
T ss_pred             HHHHHHHHHHHHHcCCceEEEEeCCEecHHHHHHHHHHhCCcc
Confidence            999999999998876 699999999999999999999999876
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure