Citrus Sinensis ID: 010120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
MFKQFFSKLPKKSLKPDSPELNRTNSGTDFSTNSNTTTTSNSAASGNGNKSNGGEKYSSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC
cHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
cHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEccc
mfkqffsklpkkslkpdspelnrtnsgtdfstnsnttttsnsaasgngnksnggekyssagksnvatkrtssavfpasvvagiepllpfkdvpngekMNLFVSKVSLCcvtfdftdptkncvekdvKKQTLIELLDFVaagsmkfsePAILAMCRMCAVNlfrvfppnyrcsshttgendddepmfdpswphLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLdlfdsddprERECLKTILHRVYgkfmvhrpfirksMSNIFYRFVFETEKHNGIAELLEILGSIisgfalplkEEHKIFLRRViiplhkpkslgtyFQQLSYCVMQFiekepklsSTVINGLLkywpitnsqkEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARlqpitgntaVLVTplatsiac
mfkqffsklpkkslkpdspelnrtnsgtdfstnsnttttsnsaasgngnksnggeKYSSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFtdptkncvekdvKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRlldlfdsddpRERECLKTIlhrvygkfmvhrpfirkSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENaarlqpitgntaVLVTPLATSIAC
MfkqffsklpkkslkpdspelNRtnsgtdfstnsnttttsnsaasgngnksnggEKYSSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC
*************************************************************************VFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCS*************FDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAVLVTPLA*****
MFKQF*********************************************************************************************NLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSC*********************WEQLE******************L******
MFKQFFSKLPKKSLKPDSPELNRTNSGTDFS**************************************TSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC
**********************************************************************************IEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPN*******TGEND*DEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAV****LATS**C
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFKQFFSKLPKKSLKPDSPELNRTNSGTDFSTNSNTTTTSNSAASGNGNKSNGGEKYSSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
Q93YV6500 Serine/threonine protein yes no 0.965 1.0 0.752 0.0
Q8RW96522 Serine/threonine protein no no 0.984 0.977 0.552 1e-164
Q9LVE2546 Serine/threonine protein no no 0.967 0.917 0.528 1e-162
Q9LU89510 Serine/threonine protein no no 0.947 0.962 0.567 1e-159
Q8LF36492 Serine/threonine protein no no 0.864 0.910 0.586 1e-157
O04376499 Serine/threonine protein no no 0.799 0.829 0.610 1e-152
O04375495 Serine/threonine protein no no 0.793 0.830 0.583 1e-147
Q9ZQY6477 Serine/threonine protein no no 0.901 0.979 0.503 1e-138
Q9SV41497 Serine/threonine protein no no 0.876 0.913 0.492 1e-129
Q28653586 Serine/threonine-protein yes no 0.851 0.752 0.492 1e-124
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1 Back     alignment and function desciption
 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/518 (75%), Positives = 442/518 (85%), Gaps = 18/518 (3%)

Query: 1   MFKQFFSKLPKKSLKPDSPELNRTNSGTDFSTNSNTTTTSNSAASGNGNKSNGGEKYSSA 60
           MFKQF SKLP+KS K DS ELNR++SG   S    + T+   +      +SN G      
Sbjct: 1   MFKQFLSKLPRKSSKSDSGELNRSSSGPVSSPVQRSGTSGGGSGPV---RSNSG------ 51

Query: 61  GKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKN 120
                  KR SSAVFPASVVAGIEPL+PFKDVP+ EK+NLFVSKVSLCCVTFDF+DP KN
Sbjct: 52  -------KRMSSAVFPASVVAGIEPLVPFKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKN 104

Query: 121 CVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGEND 180
            +EKDVK+QTL+ELLDFVA+GS+KF+EPAILAMCRMCAVNLFRVFPPNYR SS   GEND
Sbjct: 105 SIEKDVKRQTLLELLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSSS--GGEND 162

Query: 181 DDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPREREC 240
           DDEPMFDP+WPHLQIVYDLLLKFITS CLDAKVAK+Y+DH+FI+RLLDLFDS+DPREREC
Sbjct: 163 DDEPMFDPAWPHLQIVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPREREC 222

Query: 241 LKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300
           LKTILHRVYGKFMVHRPF+RKSMSNIFYRFVFETEKH+GIAELLEI GSI+SGFALPLKE
Sbjct: 223 LKTILHRVYGKFMVHRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKE 282

Query: 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKE 360
           EHKIFL RV+IPLHKPKS+G YFQQLSYC+ QFI+KEPKL S VI GLLK+WPITNSQKE
Sbjct: 283 EHKIFLWRVLIPLHKPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKE 342

Query: 361 VMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAH 420
           VMFLGE+EEI+EA++++EFQK+MV LF RI CC+ S HFQV+ERALFLWNNDQIVNLI H
Sbjct: 343 VMFLGEVEEIVEAMSVMEFQKIMVPLFLRIACCVTSSHFQVSERALFLWNNDQIVNLIGH 402

Query: 421 NRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSL 480
           NRQ ILPI+   LEKNAQ+HWNQ+VLNLTLNVRKMF EMD+ LFMSCHA+++E  A    
Sbjct: 403 NRQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCS 462

Query: 481 VDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC 518
             ++RKE W +LENAA ++PITG TAVLVTP ATSIAC
Sbjct: 463 AAEKRKEVWARLENAASMKPITGKTAVLVTPRATSIAC 500
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8RW96|2A5G_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2 Back     alignment and function description
>sp|Q9LVE2|2A5Z_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2 Back     alignment and function description
>sp|Q9LU89|2A5N_ARATH Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1 Back     alignment and function description
>sp|Q8LF36|2A5T_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform OS=Arabidopsis thaliana GN=B'THETA PE=2 SV=2 Back     alignment and function description
>sp|O04376|2A5B_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1 Back     alignment and function description
>sp|O04375|2A5A_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1 Back     alignment and function description
>sp|Q9ZQY6|2A5D_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana GN=B'DELTA PE=1 SV=1 Back     alignment and function description
>sp|Q9SV41|2A5E_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform OS=Arabidopsis thaliana GN=B'EPSILON PE=2 SV=1 Back     alignment and function description
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
255551134498 protein phosphatase 2a, regulatory subun 0.959 0.997 0.791 0.0
224089096499 predicted protein [Populus trichocarpa] 0.961 0.997 0.759 0.0
449441966515 PREDICTED: serine/threonine protein phos 0.980 0.986 0.748 0.0
297812765499 hypothetical protein ARALYDRAFT_489409 [ 0.963 1.0 0.752 0.0
15239451500 protein phosphatase 2A regulatory B subu 0.965 1.0 0.752 0.0
225430087492 PREDICTED: serine/threonine protein phos 0.949 1.0 0.718 0.0
356552541492 PREDICTED: serine/threonine protein phos 0.947 0.997 0.729 0.0
357436813494 Serine/threonine protein phosphatase 2A 0.949 0.995 0.713 0.0
356507780496 PREDICTED: serine/threonine protein phos 0.955 0.997 0.734 0.0
356563822492 PREDICTED: serine/threonine protein phos 0.949 1.0 0.721 0.0
>gi|255551134|ref|XP_002516615.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] gi|223544435|gb|EEF45956.1| protein phosphatase 2a, regulatory subunit, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/519 (79%), Positives = 455/519 (87%), Gaps = 22/519 (4%)

Query: 1   MFKQFFSKLPKKSLKPDSPELNRTNSGTDFSTNSNTTTTSNSAASGNGNKSNGGEKYSSA 60
           MFKQF SKLP+KS KP+S E  RT S +            N+++  +G KSNG       
Sbjct: 1   MFKQFLSKLPRKSSKPESTESTRTESPS--------VQRCNNSSPASGVKSNG------- 45

Query: 61  GKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKN 120
                  KRTSSAVFPASVVAGIEPL+PFKDVP+ E+MNLFVSKVSLCCVTFDFTDPTKN
Sbjct: 46  ------PKRTSSAVFPASVVAGIEPLVPFKDVPSAERMNLFVSKVSLCCVTFDFTDPTKN 99

Query: 121 CVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGEND 180
            +EKDVKKQTL+ELLDFVA+GSMKFSEPAILAMCRMCAVNLFRVF  NYR +S +  EN+
Sbjct: 100 TLEKDVKKQTLLELLDFVASGSMKFSEPAILAMCRMCAVNLFRVFQQNYRSNSISMSENE 159

Query: 181 D-DEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERE 239
           D DEPMFDP+WPHLQIVYDLLL+FITSSCLDAKVAK+YIDHSFILRLLDLFDS+DPRER+
Sbjct: 160 DNDEPMFDPAWPHLQIVYDLLLRFITSSCLDAKVAKKYIDHSFILRLLDLFDSEDPRERD 219

Query: 240 CLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLK 299
           CLKTILHRVYGKFMVHRPF+RK++SNIFYRFVFETEKHNGIAELLEI GSIISGFALPLK
Sbjct: 220 CLKTILHRVYGKFMVHRPFVRKAISNIFYRFVFETEKHNGIAELLEIFGSIISGFALPLK 279

Query: 300 EEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQK 359
           EEHKIFL RV+IPLHKPKS+G YFQQLSYCV QFIEKEPKL++ VI G+LKYWPITNSQK
Sbjct: 280 EEHKIFLWRVLIPLHKPKSVGIYFQQLSYCVTQFIEKEPKLATMVIKGMLKYWPITNSQK 339

Query: 360 EVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIA 419
           EVMFLGE+EEILEAINMVEFQK+MV LFWRIGCCINSFHFQVAERALFLWNNDQIVNLIA
Sbjct: 340 EVMFLGELEEILEAINMVEFQKIMVPLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIA 399

Query: 420 HNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLS 479
           HNR  ILP++ P LEKNA +HWNQAVLNLTLN+RKMFSEMD+VLF+SC AQ++E+  NLS
Sbjct: 400 HNRHAILPVIFPALEKNALNHWNQAVLNLTLNIRKMFSEMDEVLFLSCLAQFKEEQENLS 459

Query: 480 LVDQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC 518
           L+ ++RKEAW QLE AA L+PITGNTAVLVTPLATSIAC
Sbjct: 460 LMAEKRKEAWRQLEYAASLKPITGNTAVLVTPLATSIAC 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089096|ref|XP_002308635.1| predicted protein [Populus trichocarpa] gi|222854611|gb|EEE92158.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441966|ref|XP_004138753.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] gi|449532885|ref|XP_004173408.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297812765|ref|XP_002874266.1| hypothetical protein ARALYDRAFT_489409 [Arabidopsis lyrata subsp. lyrata] gi|297320103|gb|EFH50525.1| hypothetical protein ARALYDRAFT_489409 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239451|ref|NP_197933.1| protein phosphatase 2A regulatory B subunit [Arabidopsis thaliana] gi|75163671|sp|Q93YV6.1|2A5I_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform; Short=AtB' iota; Short=PP2A, B' subunit, iota isoform gi|16604607|gb|AAL24096.1| putative AtBgamma protein [Arabidopsis thaliana] gi|23296589|gb|AAN13126.1| putative AtBgamma protein [Arabidopsis thaliana] gi|332006073|gb|AED93456.1| protein phosphatase 2A regulatory B subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225430087|ref|XP_002284526.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552541|ref|XP_003544625.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|357436813|ref|XP_003588682.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] gi|355477730|gb|AES58933.1| Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Medicago truncatula] Back     alignment and taxonomy information
>gi|356507780|ref|XP_003522642.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|356563822|ref|XP_003550157.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 1 [Glycine max] gi|356563824|ref|XP_003550158.1| PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2179499500 AT5G25510 [Arabidopsis thalian 0.876 0.908 0.803 4.4e-203
TAIR|locus:505006470522 ATB' GAMMA [Arabidopsis thalia 0.880 0.873 0.591 6.4e-147
TAIR|locus:2089905546 AT3G21650 [Arabidopsis thalian 0.849 0.805 0.596 1.5e-145
TAIR|locus:2009912492 AT1G13460 [Arabidopsis thalian 0.791 0.833 0.632 4.2e-143
TAIR|locus:2085099499 ATB' BETA [Arabidopsis thalian 0.820 0.851 0.603 1.8e-142
TAIR|locus:2142619495 ATB' ALPHA [Arabidopsis thalia 0.797 0.834 0.584 2e-136
TAIR|locus:2092175529 AT3G26020 [Arabidopsis thalian 0.424 0.415 0.656 3.5e-127
TAIR|locus:2092080477 ATB' DELTA "serine/threonine p 0.841 0.914 0.533 1.1e-124
TAIR|locus:2082677497 AT3G54930 [Arabidopsis thalian 0.845 0.881 0.510 2.5e-120
FB|FBgn0042693984 PP2A-B' "PP2A-B'" [Drosophila 0.808 0.425 0.509 3.3e-117
TAIR|locus:2179499 AT5G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
 Identities = 367/457 (80%), Positives = 414/457 (90%)

Query:    62 KSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNC 121
             +SN + KR SSAVFPASVVAGIEPL+PFKDVP+ EK+NLFVSKVSLCCVTFDF+DP KN 
Sbjct:    47 RSN-SGKRMSSAVFPASVVAGIEPLVPFKDVPSSEKLNLFVSKVSLCCVTFDFSDPGKNS 105

Query:   122 VEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDD 181
             +EKDVK+QTL+ELLDFVA+GS+KF+EPAILAMCRMCAVNLFRVFPPNYR SS   GENDD
Sbjct:   106 IEKDVKRQTLLELLDFVASGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSSSG--GENDD 163

Query:   182 DEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECL 241
             DEPMFDP+WPHLQIVYDLLLKFITS CLDAKVAK+Y+DH+FI+RLLDLFDS+DPRERECL
Sbjct:   164 DEPMFDPAWPHLQIVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECL 223

Query:   242 KTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEE 301
             KTILHRVYGKFMVHRPF+RKSMSNIFYRFVFETEKH+GIAELLEI GSI+SGFALPLKEE
Sbjct:   224 KTILHRVYGKFMVHRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEE 283

Query:   302 HKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEV 361
             HKIFL RV+IPLHKPKS+G YFQQLSYC+ QFI+KEPKL S VI GLLK+WPITNSQKEV
Sbjct:   284 HKIFLWRVLIPLHKPKSVGNYFQQLSYCITQFIDKEPKLGSVVIKGLLKFWPITNSQKEV 343

Query:   362 MFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHN 421
             MFLGE+EEI+EA++++EFQK+MV LF RI CC+ S HFQV+ERALFLWNNDQIVNLI HN
Sbjct:   344 MFLGEVEEIVEAMSVMEFQKIMVPLFLRIACCVTSSHFQVSERALFLWNNDQIVNLIGHN 403

Query:   422 RQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLV 481
             RQ ILPI+   LEKNAQ+HWNQ+VLNLTLNVRKMF EMD+ LFMSCHA+++E  A     
Sbjct:   404 RQAILPIMFTALEKNAQNHWNQSVLNLTLNVRKMFCEMDEALFMSCHARFKEDEAKQCSA 463

Query:   482 DQRRKEAWEQLENAARLQPITGNTAVLVTPLATSIAC 518
              ++RKE W +LENAA ++PITG TAVLVTP ATSIAC
Sbjct:   464 AEKRKEVWARLENAASMKPITGKTAVLVTPRATSIAC 500
GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA;ISS
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IEA;ISS
TAIR|locus:505006470 ATB' GAMMA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089905 AT3G21650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009912 AT1G13460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085099 ATB' BETA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142619 ATB' ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092175 AT3G26020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092080 ATB' DELTA "serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082677 AT3G54930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0042693 PP2A-B' "PP2A-B'" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q93YV62A5I_ARATHNo assigned EC number0.75280.96521.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00061781
serine/threonine protein phosphatase 2A (500 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
pfam01603405 pfam01603, B56, Protein phosphatase 2A regulatory 0.0
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 8e-57
PLN00122170 PLN00122, PLN00122, serine/threonine protein phosp 5e-13
cd12820126 cd12820, LbR_YadA-like, YadA-like, left-handed bet 1e-04
cd12820126 cd12820, LbR_YadA-like, YadA-like, left-handed bet 3e-04
cd12820126 cd12820, LbR_YadA-like, YadA-like, left-handed bet 7e-04
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56 family) Back     alignment and domain information 
 Score =  549 bits (1416), Expect = 0.0
 Identities = 229/410 (55%), Positives = 298/410 (72%), Gaps = 8/410 (1%)

Query: 89  FKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSM--KFS 146
             DVP+ E  +LF+ K+  CCV  DF+DP  +   K++K+QTL E++D+V+   +  K +
Sbjct: 1   LPDVPSPEFKDLFLKKLKQCCVICDFSDPNSDLKAKEIKRQTLKEIVDYVSNSDIVGKLT 60

Query: 147 EPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITS 206
           E     + +M AVN+FR  PP      + + + DDDEP  +PSWPHL +VY++LL+FI S
Sbjct: 61  EDLYDEIFKMIAVNIFRPLPP----IPNPSLDPDDDEPFLEPSWPHLSLVYEILLRFIES 116

Query: 207 SCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNI 266
              D    K+YIDHSFI RLLDLFDS DPRER+ LKT LHR+YGKF   RPFIRK++++I
Sbjct: 117 PPFDPL--KKYIDHSFIKRLLDLFDSPDPRERDQLKTFLHRIYGKFPGLRPFIRKAINSI 174

Query: 267 FYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQL 326
            YRF++ETEK NG+AELLEILGSII+GFALPLKEEHK FL +V++PLHK K L  Y QQL
Sbjct: 175 LYRFIYETEKPNGVAELLEILGSIINGFALPLKEEHKDFLLKVLLPLHKSKHLSLYHQQL 234

Query: 327 SYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSL 386
           SYCV+QFIEK+P L+  VI GLLK+WP+TNS KEV+FL E+EEILE I   EFQK+MV L
Sbjct: 235 SYCVVQFIEKDPSLAEEVIRGLLKHWPVTNSSKEVLFLDELEEILEKIPPEEFQKIMVPL 294

Query: 387 FWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVL 446
           F  +  CI+S HFQVAERAL LWNN+  VNLI+ N ++ILPIL P L +NA++HWNQ+V 
Sbjct: 295 FKILARCISSPHFQVAERALKLWNNEYFVNLISDNSKLILPILFPALYRNAKNHWNQSVR 354

Query: 447 NLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAA 496
           NL LNV K+  E+D  LF  C  +Y+E+ A     +++RK+ W ++  AA
Sbjct: 355 NLALNVLKLLMEIDPDLFDECGNKYKEKEAKEKKKEKKRKKTWARIAEAA 404

Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits (See also pfam01240), this family is called the B56 family. Length = 405
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>gnl|CDD|240612 cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll Back     alignment and domain information
>gnl|CDD|240612 cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll Back     alignment and domain information
>gnl|CDD|240612 cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 100.0
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 100.0
PLN00122170 serine/threonine protein phosphatase 2A; Provision 97.5
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 89.53
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 83.96
PF14500262 MMS19_N: Dos2-interacting transcription regulator 81.61
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-165  Score=1269.69  Aligned_cols=430  Identities=58%  Similarity=1.001  Sum_probs=420.5

Q ss_pred             cccCCCcCCCc-cccccccCCCCCCCCchhhHHHHHHHHhhccccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCCCC
Q 010120           68 KRTSSAVFPAS-VVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDFTDPTKNCVEKDVKKQTLIELLDFVAAGSMKFS  146 (518)
Q Consensus        68 ~~~~~~~~~~~-~~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~d~v~~~~~~lt  146 (518)
                      +++++|+|+.+ ...++++||+|+|||++||++||++|+++||++|||+||.+|.++||+||+||+||+||+.++++++|
T Consensus        26 ~~~~~s~~~~~~~~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kit  105 (457)
T KOG2085|consen   26 RSQSSSQFRATSQNVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKIS  105 (457)
T ss_pred             CCCCCcccccccCCCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhcccccc
Confidence            44566677654 67789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHH
Q 010120          147 EPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRL  226 (518)
Q Consensus       147 e~~~~~i~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~L  226 (518)
                      +.+|+++++|+++||||+|||..++++   +|+|||||++||+|||||+|||+||||++||+||+++||+||||+||++|
T Consensus       106 e~~~~~vv~m~s~nifR~lpp~~n~~~---~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkL  182 (457)
T KOG2085|consen  106 EEVYSEVVKMFSVNIFRTLPPSVNPTG---FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKL  182 (457)
T ss_pred             HHHHHHHHHHHHHHhhccCCcccCCCc---CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHH
Confidence            999999999999999999999998864   89999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHH
Q 010120          227 LDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFL  306 (518)
Q Consensus       227 l~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl  306 (518)
                      |+|||||||||||+|||+|||||||||+||+|||++|||+||+||||||+|||||||||||||||||||+|||||||+||
T Consensus       183 LdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL  262 (457)
T KOG2085|consen  183 LDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFL  262 (457)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 010120          307 RRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSL  386 (518)
Q Consensus       307 ~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pL  386 (518)
                      .||||||||+|+++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+||
T Consensus       263 ~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PL  342 (457)
T KOG2085|consen  263 VRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPL  342 (457)
T ss_pred             HHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHHHhhCHHHHHH
Q 010120          387 FWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMS  466 (518)
Q Consensus       387 F~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil~e~D~~lF~~  466 (518)
                      |+|||+|++|+|||||||||++|||+||++||++|+.+|+|||||+||+++++|||++|+++++||+|+|||||++||++
T Consensus       343 f~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFee  422 (457)
T KOG2085|consen  343 FRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEE  422 (457)
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCC
Q 010120          467 CHAQYREQVANLSLVDQRRKEAWEQLENAARLQP  500 (518)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~~~  500 (518)
                      |+++|++++.++++++++|+++|++||++|+..+
T Consensus       423 c~~~y~~~~~k~~~~~~~re~~W~~le~~~~~~~  456 (457)
T KOG2085|consen  423 CLALYKEDRWKEKETEEKREETWKRLEELAAENP  456 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999996543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PLN00122 serine/threonine protein phosphatase 2A; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
2npp_B449 Structure Of The Protein Phosphatase 2a Holoenzyme 1e-121
2iae_B407 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-119
3fga_B403 Structural Basis Of Pp2a And Sgo Interaction Length 1e-118
2nyl_B388 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-110
2jak_A392 Human Pp2a Regulatory Subunit B56g Length = 392 1e-108
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/447 (48%), Positives = 300/447 (67%), Gaps = 14/447 (3%)
Query: 58  SSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TD 116
           + AG   V     S+  F   V      LL  +DVP  ++  LF+ K+  CCV FDF +D
Sbjct: 5   NKAGSRMVVDAANSNGPFQPVV------LLHIRDVPPADQEKLFIQKLRQCCVLFDFVSD 58
Query: 117 PTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTT 176
           P  +   K+VK+  L E+++++       +EP    +  M AVN+FR  PP    SS+ T
Sbjct: 59  PLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP----SSNPT 114
Query: 177 G---ENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSD 233
           G   + ++DEP  + +WPHLQ+VY+  L+F+ S      +AK+YID  F+L+LL+LFDS+
Sbjct: 115 GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSE 174
Query: 234 DPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISG 293
           DPRER+ LKT LHR+YGKF+  R +IRK ++NIFYRF++ETE HNGIAELLEILGSII+G
Sbjct: 175 DPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234
Query: 294 FALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWP 353
           FALPLKEEHKIFL +V++PLHK KSL  Y  QL+YCV+QF+EK+  L+  V+  LLKYWP
Sbjct: 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWP 294
Query: 354 ITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQ 413
            T+S KEVMFL E+EEIL+ I   EF K+M  LF ++  C++S HFQVAERAL+ WNN+ 
Sbjct: 295 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEY 354
Query: 414 IVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYRE 473
           I++LI+ N   ILPI+ P L +N+++HWN+ +  L  N  K+F EM+  LF  C  Q++ 
Sbjct: 355 IMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKA 414
Query: 474 QVANLSLVDQRRKEAWEQLENAARLQP 500
           +     L  + R+EAW ++EN A+  P
Sbjct: 415 EKLKEKLKMKEREEAWVKIENLAKANP 441
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 407 Back     alignment and structure
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction Length = 403 Back     alignment and structure
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 388 Back     alignment and structure
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 0.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-174
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 1e-161
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Back     alignment and structure
 Score =  522 bits (1346), Expect = 0.0
 Identities = 212/447 (47%), Positives = 296/447 (66%), Gaps = 5/447 (1%)

Query: 65  VATKRTSSAVFPASVVAG---IEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKN 120
              K  S  V  A+   G      LL  +DVP  ++  LF+ K+  CCV FDF +DP  +
Sbjct: 3   TCNKAGSRMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSD 62

Query: 121 CVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGEND 180
              K+VK+  L E+++++       +EP    +  M AVN+FR  PP+    +    + +
Sbjct: 63  LKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSN-PTGAEFDPE 121

Query: 181 DDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPREREC 240
           +DEP  + +WPHLQ+VY+  L+F+ S      +AK+YID  F+L+LL+LFDS+DPRER+ 
Sbjct: 122 EDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181

Query: 241 LKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKE 300
           LKT LHR+YGKF+  R +IRK ++NIFYRF++ETE HNGIAELLEILGSII+GFALPLKE
Sbjct: 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241

Query: 301 EHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKE 360
           EHKIFL +V++PLHK KSL  Y  QL+YCV+QF+EK+  L+  V+  LLKYWP T+S KE
Sbjct: 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKE 301

Query: 361 VMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAH 420
           VMFL E+EEIL+ I   EF K+M  LF ++  C++S HFQVAERAL+ WNN+ I++LI+ 
Sbjct: 302 VMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD 361

Query: 421 NRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMFSEMDDVLFMSCHAQYREQVANLSL 480
           N   ILPI+ P L +N+++HWN+ +  L  N  K+F EM+  LF  C  Q++ +     L
Sbjct: 362 NAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421

Query: 481 VDQRRKEAWEQLENAARLQPITGNTAV 507
             + R+EAW ++EN A+  P      +
Sbjct: 422 KMKEREEAWVKIENLAKANPQVLKKRI 448
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 100.0
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 94.51
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 94.5
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 94.26
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 93.57
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.94
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.9
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 92.63
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 90.79
1qgr_A 876 Protein (importin beta subunit); transport recepto 90.12
2x19_B963 Importin-13; nuclear transport, protein transport; 87.75
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 85.43
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 82.43
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
Probab=100.00  E-value=2.7e-148  Score=1176.90  Aligned_cols=437  Identities=49%  Similarity=0.886  Sum_probs=382.4

Q ss_pred             cCCCCccccccccCCCcCCCccccccccCCCCCCCCchhhHHHHHHHHhhccccccc-cCCCCCchhhHHHHHHHHHHHH
Q 010120           58 SSAGKSNVATKRTSSAVFPASVVAGIEPLLPFKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLD  136 (518)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~d  136 (518)
                      .+|+...+..++++|++|+.      ++||+|+|||++++++||++||++||++||| +||.+|+++||+||+||+||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~------~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~   78 (449)
T 2npp_B            5 NKAGSRMVVDAANSNGPFQP------VVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVE   78 (449)
T ss_dssp             ---------------------------------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHH
T ss_pred             CCCCcccCCCCcCCCCCCCC------CCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHH
Confidence            34455556678888888874      4999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhh
Q 010120          137 FVAAGSMKFSEPAILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKR  216 (518)
Q Consensus       137 ~v~~~~~~lte~~~~~i~~Mvs~NiFR~lPp~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~  216 (518)
                      |++++++++||++|+++++||++||||++||++++.+ ..+|+|||||++||+|||||+||++|+|||+||+||+++||+
T Consensus        79 ~v~~~~~~lte~i~~~i~~Mi~~NiFR~lPp~~~~~~-~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~  157 (449)
T 2npp_B           79 YITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNPTG-AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKK  157 (449)
T ss_dssp             HHHSSCCSCCCSSCCHHHHHHHHHHCCCCCCCSSCCS-SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGG
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCccc-ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhh
Confidence            9999999999999999999999999999999887643 479999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCC
Q 010120          217 YIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFAL  296 (518)
Q Consensus       217 ~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHrIY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFal  296 (518)
                      |||++||++||++||||||||||+|||+||||||||+++|+|||++|||+|++||||+++||||+||||||||||||||+
T Consensus       158 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~  237 (449)
T 2npp_B          158 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL  237 (449)
T ss_dssp             TSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCS
T ss_pred             hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhhcCCCCCchhhhhhhHHHHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcCh
Q 010120          297 PLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSYCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINM  376 (518)
Q Consensus       297 PLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~  376 (518)
                      |||+||++||.||||||||+++++.||+||+|||+||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|
T Consensus       238 PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~  317 (449)
T 2npp_B          238 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP  317 (449)
T ss_dssp             SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred             CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCchHHHHHHHHHhhcchhHHHHHHhccccccccchHHHHHHhhccchHHHHHHHHHHHHHH
Q 010120          377 VEFQKVMVSLFWRIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLPVLEKNAQSHWNQAVLNLTLNVRKMF  456 (518)
Q Consensus       377 ~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~lwnNe~~~~li~~n~~~IlPii~p~L~~~~~~HWn~~V~~la~~vlkil  456 (518)
                      ++|++++.|||+|||+|++|+|||||||||++|+|++|+++|++|+++|+|+|||+|++++++|||++|+++|++|+++|
T Consensus       318 ~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l  397 (449)
T 2npp_B          318 SEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLF  397 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC
Q 010120          457 SEMDDVLFMSCHAQYREQVANLSLVDQRRKEAWEQLENAARLQPI  501 (518)
Q Consensus       457 ~e~D~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~le~~A~~~~~  501 (518)
                      ||||+++|++|.++|+++++++++++++|+++|++|+++|++++.
T Consensus       398 ~e~d~~lf~~c~~~~~~~~~~~~~~~~~r~~~W~~i~~~A~~~~~  442 (449)
T 2npp_B          398 MEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENLAKANPQ  442 (449)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCC-----------------
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999976654
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 518
d2jaka1343 a.118.1.20 (A:30-372) Serine/threonine-protein pho 1e-166
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  472 bits (1217), Expect = e-166
 Identities = 181/343 (52%), Positives = 247/343 (72%), Gaps = 2/343 (0%)

Query: 90  KDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEP 148
           +DVP  ++  LF+ K+  CCV FDF +DP  +   K+VK+  L E+++++       +EP
Sbjct: 2   RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61

Query: 149 AILAMCRMCAVNLFRVFPPNYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSC 208
               +  M AVN+FR  PP+    +    + ++DEP  + +WPHLQ+VY+  L+F+ S  
Sbjct: 62  IYPEVVHMFAVNMFRTLPPSSN-PTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPD 120

Query: 209 LDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHRVYGKFMVHRPFIRKSMSNIFY 268
               +AK+YID  F+L+LL+LFDS+DPRER+ LKT LHR+YGKF+  R +IRK ++NIFY
Sbjct: 121 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY 180

Query: 269 RFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLSY 328
           RF++ETE HNGIAELLEILGSII+GFALPLKEEHKIFL +V++PLHK KSL  Y  QL+Y
Sbjct: 181 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAY 240

Query: 329 CVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFW 388
           CV+QF+EK+  L+  V+  LLKYWP T+S KEVMFL E+EEIL+ I   EF K+M  LF 
Sbjct: 241 CVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFR 300

Query: 389 RIGCCINSFHFQVAERALFLWNNDQIVNLIAHNRQVILPILLP 431
           ++  C++S HFQVAERAL+ WNN+ I++LI+ N   ILPI+ P
Sbjct: 301 QLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 343

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 100.0
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 91.81
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 90.09
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 89.76
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 88.7
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 87.67
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 86.91
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 85.08
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 80.32
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-122  Score=951.18  Aligned_cols=342  Identities=53%  Similarity=0.974  Sum_probs=324.2

Q ss_pred             CCCCCchhhHHHHHHHHhhccccccc-cCCCCCchhhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhhhccccCCC
Q 010120           89 FKDVPNGEKMNLFVSKVSLCCVTFDF-TDPTKNCVEKDVKKQTLIELLDFVAAGSMKFSEPAILAMCRMCAVNLFRVFPP  167 (518)
Q Consensus        89 l~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~d~v~~~~~~lte~~~~~i~~Mvs~NiFR~lPp  167 (518)
                      |+|||++||++||++||++||++||| +||.+|+++||+||++|+||+||++++++.+||++|+++++||++||||++||
T Consensus         1 l~d~~~~e~~~lf~~Kl~~C~~i~DF~~d~~~d~~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~lPp   80 (343)
T d2jaka1           1 IRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPP   80 (343)
T ss_dssp             CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCCCC
T ss_pred             CCCCChHHHHHHHHHHHHHhCcccCCCCCccccHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            68999999999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhccCChhHhhhhCCHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 010120          168 NYRCSSHTTGENDDDEPMFDPSWPHLQIVYDLLLKFITSSCLDAKVAKRYIDHSFILRLLDLFDSDDPRERECLKTILHR  247 (518)
Q Consensus       168 ~~~~~~~~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~~d~~~ak~~Id~~Fv~~Ll~lfdSeDpRERd~LKtiLHr  247 (518)
                      .+++. +.++|+|||||++||||||||+||++|+||++|++||++.+++|||++||.+|+++|+||||||||+||++|||
T Consensus        81 ~~~~~-~~~~~~e~d~~~~e~sWpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~  159 (343)
T d2jaka1          81 SSNPT-GAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHR  159 (343)
T ss_dssp             ----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCcc-ccccCccccccccCCCCchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            98764 35789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccCchhHHHHHHHHHHhhhhhccccccChHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhcCCCCCchhhhhhhHH
Q 010120          248 VYGKFMVHRPFIRKSMSNIFYRFVFETEKHNGIAELLEILGSIISGFALPLKEEHKIFLRRVIIPLHKPKSLGTYFQQLS  327 (518)
Q Consensus       248 IY~Kf~~~R~fIRk~Innif~~fiyEte~hnGIaELLeIlgSIInGFalPLKeEHk~Fl~rvLiPLHk~k~~~~yh~qL~  327 (518)
                      |||||+++|+|||++|+|+|++||||+++||||+|||||+|||||||++|||+||+.|+.++|+||||+++++.||+||+
T Consensus       160 iy~kf~~~R~~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~  239 (343)
T d2jaka1         160 IYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA  239 (343)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHhhccCCCCCChhHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 010120          328 YCVMQFIEKEPKLSSTVINGLLKYWPITNSQKEVMFLGEIEEILEAINMVEFQKVMVSLFWRIGCCINSFHFQVAERALF  407 (518)
Q Consensus       328 yCv~qfleKDp~L~~~vi~glLk~WP~tns~KEv~FL~EleeILe~~~~~ef~~i~~pLF~~ia~ci~S~hfqVAERAL~  407 (518)
                      ||++||++|||+|+..+++||+||||+||++|||+||+||++||+.++|++|++++.|+|++||+|++|+|||||||||+
T Consensus       240 ~~v~~f~~kDp~l~~~~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~~~lf~~la~ci~S~h~qVAErAl~  319 (343)
T d2jaka1         240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALY  319 (343)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHG
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcchhHHHHHHhccccccccchH
Q 010120          408 LWNNDQIVNLIAHNRQVILPILLP  431 (518)
Q Consensus       408 lwnNe~~~~li~~n~~~IlPii~p  431 (518)
                      +|+|++|+++|++|++.|+|+|+|
T Consensus       320 ~w~N~~~~~li~~n~~~i~Pii~P  343 (343)
T d2jaka1         320 YWNNEYIMSLISDNAAKILPIMFP  343 (343)
T ss_dssp             GGGCHHHHHHHHHTHHHHTTTSCC
T ss_pred             HHCCHHHHHHHHhCccceEeeeCC
Confidence            999999999999999999999997
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure