Citrus Sinensis ID: 010121

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
ccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccc
cccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHEEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccc
mennakqplisplleeedqeqnrkpqnhllvpeslpavSTAVFtagtddippingvrDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGqaygagqldMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFsgacgptwsgfsWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSvrtsnelgaahprtAKLSLVVAVFSSFLIGLTLSLILIVTrnqypalfssdpeVIDLVIDLTPLLALCIVInniqpvlsgvaIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDrirkwgghtenet
mennakqplisplLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAgtddippingVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAavagdrirkwgghtenet
MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMvlaviaavalllhtilswllilklglglvgaavalnaSWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
**********************************LPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKW********
*********************************************************DFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAV****************
********LISPLLEE*********QNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
***************************************************PINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWG*******
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MENNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGGHTENET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query517 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.957 0.976 0.423 1e-107
Q9SIA5476 MATE efflux family protei no no 0.862 0.936 0.375 3e-74
Q9SIA3476 MATE efflux family protei no no 0.843 0.915 0.380 2e-73
Q8GXM8476 MATE efflux family protei no no 0.852 0.926 0.361 4e-72
Q8RWF5483 MATE efflux family protei no no 0.860 0.921 0.354 6e-69
Q9SIA4476 MATE efflux family protei no no 0.864 0.939 0.353 8e-69
Q9SIA1477 MATE efflux family protei no no 0.860 0.932 0.347 3e-66
Q9LUH2477 MATE efflux family protei no no 0.885 0.960 0.304 9e-63
Q9LUH3469 MATE efflux family protei no no 0.874 0.963 0.313 1e-62
Q5RFD2570 Multidrug and toxin extru yes no 0.864 0.784 0.310 8e-48
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/503 (42%), Positives = 309/503 (61%), Gaps = 8/503 (1%)

Query: 15  EEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSREFLKEGKKLWYLA 74
           E  +    R   +  +   S P +   +   G+   P     R + +  + E K LW L+
Sbjct: 5   ETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTP-----RWWLKLAVWESKLLWTLS 59

Query: 75  GPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQ 134
           G +I +++  Y L  +T +F+GH+ +L LA  S+    I G ++G MLGM SA++T+CGQ
Sbjct: 60  GASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQ 119

Query: 135 AYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMI 194
           AYGA Q   MG+  QR+ ++ +  A+ L F+Y ++  IL  +GQ+  I++    FA  MI
Sbjct: 120 AYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMI 179

Query: 195 PQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNA 254
           PQ++A+AL  PM +FLQAQ+ +  LA ++    LLHT+L+WL+   L  GL+GAA+ L+ 
Sbjct: 180 PQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSF 239

Query: 255 SWWFIDITRLLYIF-SGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALIL 313
           SWW +     +YI  S  C  TW+GFS +AF  +W + +L++ASAVMLC+EIWY   L++
Sbjct: 240 SWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVI 299

Query: 314 FAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAV 373
            +G L N  +S+  +SICM  L W     +G++AA+SVR SNELGA +PR A LS+VV  
Sbjct: 300 ISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVN 359

Query: 374 FSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAI 433
            ++ LI   L +I++V R      F+SD EVI  V DL PLLA+ I +N IQP+LSGVAI
Sbjct: 360 ITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAI 419

Query: 434 GAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKT 493
           G+GWQA VAYVN+  YY+ G+P+G +LG+   L V GIW GM+ G ILQT  +  +  KT
Sbjct: 420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKT 479

Query: 494 NWNKEAAVAGDRIRKWGGHTENE 516
           NW  E   A  R++     TEN+
Sbjct: 480 NWTSEVENAAQRVKT--SATENQ 500
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
225470571544 PREDICTED: protein TRANSPARENT TESTA 12- 0.970 0.922 0.713 0.0
296083409 1152 unnamed protein product [Vitis vinifera] 0.970 0.435 0.713 0.0
356566004509 PREDICTED: protein TRANSPARENT TESTA 12- 0.963 0.978 0.702 0.0
224127997470 predicted protein [Populus trichocarpa] 0.903 0.993 0.749 0.0
255574013531 multidrug resistance pump, putative [Ric 0.992 0.966 0.699 0.0
356497730518 PREDICTED: protein TRANSPARENT TESTA 12- 0.972 0.971 0.673 0.0
224106133512 predicted protein [Populus trichocarpa] 0.972 0.982 0.679 0.0
357517321512 Protein TRANSPARENT TESTA [Medicago trun 0.957 0.966 0.663 0.0
357485681517 Protein TRANSPARENT TESTA [Medicago trun 0.974 0.974 0.667 0.0
449434969504 PREDICTED: protein TRANSPARENT TESTA 12- 0.963 0.988 0.671 0.0
>gi|225470571|ref|XP_002272174.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/517 (71%), Positives = 430/517 (83%), Gaps = 15/517 (2%)

Query: 3   NNAKQPLISPLLEEEDQEQNRKPQNHLLVPESLPAVSTAVFTAGTDDIPPINGVRDFSRE 62
            N KQPL+S    ++D+  NR   N LL          A F A   DI PINGVRDF +E
Sbjct: 37  ENGKQPLLSA--RQDDETPNRTAANSLL----------ATFNADESDIGPINGVRDFYKE 84

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAML 122
           F+ E KKLWYLAGPAIF ++CQY LGAITQVF+GH+ TL LAAVSVENSVIAGFSFG ML
Sbjct: 85  FIVESKKLWYLAGPAIFTSLCQYSLGAITQVFAGHVGTLELAAVSVENSVIAGFSFGVML 144

Query: 123 GMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEI 182
           GMGSALETLCGQA+GAGQLDM+GVY+QRSW+IL +TA++L F+YIF+ ++L LIGQT+ I
Sbjct: 145 GMGSALETLCGQAFGAGQLDMLGVYMQRSWVILTSTAVLLSFLYIFSARLLKLIGQTEAI 204

Query: 183 SNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLG 242
           S  AG FA WM+PQLFAYA+NFP+ KFLQAQSKIMV+AVIAAV L+LHT+ SWLL+LKL 
Sbjct: 205 SKEAGMFAVWMLPQLFAYAVNFPLAKFLQAQSKIMVMAVIAAVVLVLHTVFSWLLMLKLQ 264

Query: 243 LGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302
            GLVGAAV LNASW  ID+ +LLYIFSG CG  W+GFSWKAF SLW FVRLSLASAVMLC
Sbjct: 265 WGLVGAAVVLNASWVLIDVAQLLYIFSGTCGRAWTGFSWKAFQSLWGFVRLSLASAVMLC 324

Query: 303 VEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 362
           +E+WYFMALILFAGYLKNA++SV  LSICMNILGW+ MV++G NAA+SVR SNELGA HP
Sbjct: 325 LEVWYFMALILFAGYLKNAEISVDALSICMNILGWTVMVALGCNAAISVRVSNELGATHP 384

Query: 363 RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVIN 422
           RTAK ++VV V +SFLIGL LS ILI+ R QYPALFS   EV +LV +LTPLLA CIVIN
Sbjct: 385 RTAKFAVVVVVITSFLIGLVLSAILIIFRKQYPALFSDSEEVEELVDELTPLLAFCIVIN 444

Query: 423 NIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQ 482
           N+QPVLSGVAIGAGWQA VA+VNI CYYLFG+PLGL+LGY VGL VKGIWCGML GT++Q
Sbjct: 445 NVQPVLSGVAIGAGWQAFVAWVNIACYYLFGVPLGLVLGYKVGLGVKGIWCGMLSGTVVQ 504

Query: 483 TCVIFGIIYKTNWNKEAAVAGDRIRKWGGH---TENE 516
           TCV+FG++Y+TNWNKEA++AGDRI+KWGG+    EN+
Sbjct: 505 TCVLFGMVYRTNWNKEASIAGDRIKKWGGNEAGREND 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083409|emb|CBI23362.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356566004|ref|XP_003551225.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224127997|ref|XP_002329229.1| predicted protein [Populus trichocarpa] gi|222871010|gb|EEF08141.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255574013|ref|XP_002527924.1| multidrug resistance pump, putative [Ricinus communis] gi|223532699|gb|EEF34481.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356497730|ref|XP_003517712.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|224106133|ref|XP_002333719.1| predicted protein [Populus trichocarpa] gi|222837995|gb|EEE76360.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357517321|ref|XP_003628949.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355522971|gb|AET03425.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|357485681|ref|XP_003613128.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514463|gb|AES96086.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434969|ref|XP_004135268.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.897 0.928 0.665 1e-164
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.912 0.947 0.641 1.5e-163
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.996 0.986 0.595 1.6e-159
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.903 0.906 0.627 1.1e-156
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.891 0.952 0.522 2e-127
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.500 0.477 0.503 2.4e-123
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.858 0.886 0.456 4.4e-107
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.858 0.877 0.453 5.7e-107
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.862 0.886 0.445 5.8e-105
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.491 0.519 0.431 2.2e-101
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 309/464 (66%), Positives = 364/464 (78%)

Query:    48 DDIPPINGVRDFSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVS 107
             DDIPPI  V  F REF  E KKLWYLAGPAIF ++ QY LGAITQVF+GHIST+ALAAVS
Sbjct:    27 DDIPPITTVGGFVREFNVETKKLWYLAGPAIFTSVNQYSLGAITQVFAGHISTIALAAVS 86

Query:   108 VENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYI 167
             VENSV+AGFSFG MLGMGSALETLCGQA+GAG+L M+GVYLQRSW+IL  TAL+L  +YI
Sbjct:    87 VENSVVAGFSFGIMLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYI 146

Query:   168 FAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMXXXXXXXXXX 227
             FA  IL+ IGQT  IS+AAG F+ +MIPQ+FAYA+NFP  KFLQ+QSKIM          
Sbjct:   147 FAAPILASIGQTAAISSAAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAVISAVAL 206

Query:   228 XXXXXXXXXXXXXXXXXXXXXXXXXXXSWWFIDITRLLYIFSGACGPTWSGFSWKAFHSL 287
                                        SW FID+ +L+YIFSG CG  WSGFSW+AFH+L
Sbjct:   207 VIHVPLTWFVIVKLQWGMPGLAVVLNASWCFIDMAQLVYIFSGTCGEAWSGFSWEAFHNL 266

Query:   288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNA 347
             WSFVRLSLASAVMLC+E+WYFMA+ILFAGYLKNA++SVA LSICMNILGW+ M++IGMN 
Sbjct:   267 WSFVRLSLASAVMLCLEVWYFMAIILFAGYLKNAEISVAALSICMNILGWTAMIAIGMNT 326

Query:   348 AVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDL 407
             AVSVR SNELGA HPRTAK SL+VAV +S LIG  +S+IL++ R+QYP+LF  D +VI L
Sbjct:   327 AVSVRVSNELGANHPRTAKFSLLVAVITSTLIGFIVSMILLIFRDQYPSLFVKDEKVIIL 386

Query:   408 VIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLE 467
             V +LTP+LAL IVINN+QPVLSGVA+GAGWQA VAYVNI CYY+FGIP GL+LGY +   
Sbjct:   387 VKELTPILALSIVINNVQPVLSGVAVGAGWQAVVAYVNIACYYVFGIPFGLLLGYKLNYG 446

Query:   468 VKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAAVAGDRIRKWGG 511
             V GIWCGML GT++QT V+  +I KTNW+ EA++A DRIR+WGG
Sbjct:   447 VMGIWCGMLTGTVVQTIVLTWMICKTNWDTEASMAEDRIREWGG 490
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00009468001
SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (509 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-167
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-59
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-57
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-43
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-43
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-32
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-31
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 9e-30
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 7e-29
pfam01554161 pfam01554, MatE, MatE 8e-29
pfam01554161 pfam01554, MatE, MatE 1e-26
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-25
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-22
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 9e-22
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 6e-19
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-18
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-15
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-12
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-12
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 4e-12
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-10
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 8e-09
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-08
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-06
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 7e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-05
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 1e-04
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 8e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 8e-04
COG0728518 COG0728, MviN, Uncharacterized membrane protein, p 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  478 bits (1234), Expect = e-167
 Identities = 194/436 (44%), Positives = 288/436 (66%), Gaps = 2/436 (0%)

Query: 66  EGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMG 125
           E KKL  LA P +  ++ QY L  ++ VF GH+  L LAA S+ +S      F  +LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 126 SALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNA 185
           SAL+TLCGQA+GA    ++GVYLQR+ +IL+   + +  +++  + IL L+GQ  EI+  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 186 AGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245
           AG +  W+IP LFAYAL  P+ ++LQAQ  ++ L  I+ VALLL+ +L++LL+  LGLG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 246 VGAAVALNASWWFIDITRLLYI-FSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVE 304
           +GAA+A + S+W I +  LLYI FS     TW GFS +AF     F++L++ SA+MLC+E
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 305 IWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRT 364
            W F  L+L AG L    +++A  SIC+       M+ +G++ A SVR  NELGA +P+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 365 AKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNI 424
           AKL+ +VA+  S +IG+ ++++L+V R+ +  LF+SD EVI LV DL P+LAL  + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 425 QPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYLVGLEVKGIWCGMLCGTILQTC 484
           Q VLSGV  G G Q   AYVN+  YYL G+P+GL+L +++GL +KG+W G++ G ILQ  
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 485 VIFGIIYKTNWNKEAA 500
           ++  II +T+W+KEA 
Sbjct: 420 ILLLIILRTDWDKEAE 435

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223800 COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 517
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.98
PRK10459492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.94
PRK00187464 multidrug efflux protein NorA; Provisional 99.88
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.87
PRK10189 478 MATE family multidrug exporter; Provisional 99.87
PRK01766456 multidrug efflux protein; Reviewed 99.86
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.73
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.68
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.67
PRK10459492 colanic acid exporter; Provisional 99.62
PRK15099416 O-antigen translocase; Provisional 99.58
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.55
COG2244480 RfbX Membrane protein involved in the export of O- 99.5
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.28
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.19
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.07
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.85
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.5
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.31
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.17
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.02
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.95
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.89
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.58
COG4267467 Predicted membrane protein [Function unknown] 96.18
COG4267 467 Predicted membrane protein [Function unknown] 82.27
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3e-58  Score=462.15  Aligned_cols=434  Identities=28%  Similarity=0.419  Sum_probs=412.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCcc
Q 010121           63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD  142 (517)
Q Consensus        63 ~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~~  142 (517)
                      .++..|+++++++|++++++.+.+++++|+.++||+|++++++.++++++..++ +.+..|++.++++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            455889999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121          143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV  221 (517)
Q Consensus       143 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  221 (517)
                      ++++..+++++++++++++..++ +++.++++.+++.++|+.+.+.+|+++..++.|+..++.++.+++|+.||++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999888776 99999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hC-CCchhHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCCHHhHhhHHHHHHHHHHH
Q 010121          222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS  297 (517)
Q Consensus       222 ~~i~~~~~~i~l~~~li~~-~~-~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~p~  297 (517)
                      .+++++++|+++|++|++. ++ +|+.|+++||++++++.++++++++.+++.  .....+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 68 999999999999999999999999998752  2232333345668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHH
Q 010121          298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF  377 (517)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~  377 (517)
                      +++++.+...+...+.+.+++|  ++.+|+|+++.++.++.+++..|++++.++++++++|+||++++++..+.++.+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  78999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhHHHH
Q 010121          378 LIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLG  457 (517)
Q Consensus       378 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~  457 (517)
                      .+++..+++++++++++..+|++|+|+.+.+..++++.++..++++++.+..+++||.||+|.++.+++++.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Q 010121          458 LILGYLVGLEVKGIWCGMLCGTILQTCVIFGIIYKTNWNKEAA  500 (517)
Q Consensus       458 ~~l~~~~~~g~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~  500 (517)
                      +++++.. +|..|+|+++.+++.++.++..+++++.+|++...
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAV  450 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            9998765 89999999999999999999999999988887654

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 4e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 10/231 (4%)
Query: 256 WWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALI 312
           +W + +  L YI +    A    +  F       L    RL    A  L  E+  F  + 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262
Query: 313 LFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVA 372
           L    L +    VA   + +N      M  + + AAVS+R  ++LG    + A ++  V 
Sbjct: 263 LLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320
Query: 373 VFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVA 432
           + +        +L+ ++ R Q   L++ +  V+ L + L    A+   ++ +Q V +G  
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSL 380
Query: 433 IGAGWQATVAYVNIGCYYLFGIPLGLILGYL-----VGLEVKGIWCGMLCG 478
            G      + +     Y++ G+P G ILG         L  KG W G + G
Sbjct: 381 RGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-73
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 6e-05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  238 bits (610), Expect = 3e-73
 Identities = 102/443 (23%), Positives = 186/443 (41%), Gaps = 17/443 (3%)

Query: 63  FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSV-IAGFSFGAM 121
           + KE   L  LA P +  ++ Q  +G +  + +G +S + +AAVS+  S+ +    FG  
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-- 64

Query: 122 LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE 181
           +G+  AL  +  Q  GAG+   +   + +  I+ +  ++ ++ +    Q I+  +   + 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124

Query: 182 ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLIL-K 240
           ++     +   +I  + AY L   +  F    S      VI  + LLL+  L+W+ +  K
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184

Query: 241 LG---LGLVGAAVALNASWWFIDITRLLYIFSG---ACGPTWSGFSWKAFHSLWSFVRLS 294
            G   LG VG  VA    +W + +  L YI +    A    +  F       L    RL 
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244

Query: 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTS 354
              A  L  E+  F  + L    L      VA   + +N      M  + + AAVS+R  
Sbjct: 245 FPVAAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG 302

Query: 355 NELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPL 414
           ++LG    + A ++  V + +        +L+ ++ R Q   L++ +  V+ L + L   
Sbjct: 303 HKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLF 362

Query: 415 LALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGIPLGLILGYL-----VGLEVK 469
            A+   ++ +Q V +G   G      + +     Y++ G+P G ILG         L  K
Sbjct: 363 AAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAK 422

Query: 470 GIWCGMLCGTILQTCVIFGIIYK 492
           G W G + G      ++   +Y 
Sbjct: 423 GFWLGFIIGLSAAALMLGQRLYW 445
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query517
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.83
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.94
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 89.31
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.8e-48  Score=397.39  Aligned_cols=429  Identities=23%  Similarity=0.359  Sum_probs=395.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHhcCCCc
Q 010121           62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL  141 (517)
Q Consensus        62 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~a~~~~~~~~~g~~~~  141 (517)
                      ..++..|++++.++|.+++++...+++++|+.+++++|++++|+++++.++..+. ..+..|++.+..+.++|++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence            4567899999999999999999999999999999999999999999999998877 778899999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 010121          142 DMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV  221 (517)
Q Consensus       142 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  221 (517)
                      ++.++.+++++.+.+++++++++++.+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.||++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999998877778889998888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-h---CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCC--C-CCCCCHHhHhhHHHHHHHH
Q 010121          222 IAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGP--T-WSGFSWKAFHSLWSFVRLS  294 (517)
Q Consensus       222 ~~i~~~~~~i~l~~~li~~-~---~~g~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~  294 (517)
                      .++++.++|+++++++++. +   ++|+.|+++++.+++++..++..+++++++...  + ++++.+.+++.+|++++++
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975 4   699999999999999999999888887764221  1 2233334567899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 010121          295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF  374 (517)
Q Consensus       295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~i~~a~~~~~s~~~g~~~~~~~~~~~~~~~~  374 (517)
                      .|.+++.+...+.+.+++.+++.+|  ++++++|+++.++.++..++..+++++..|.+++++|++|++++++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999996  78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccccccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccCcchhhHHHHHHHHHHHhH
Q 010121          375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGVAIGAGWQATVAYVNIGCYYLFGI  454 (517)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i  454 (517)
                      +.+.++++++++++++++++..+|++|+++.+.+..++++++++.++++++.+..+++++.||+|.+++.++++.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh----cC-CChhhHHHHHHHHHHHHHHHHHHHHHhc
Q 010121          455 PLGLILGYL----VG-LEVKGIWCGMLCGTILQTCVIFGIIYKT  493 (517)
Q Consensus       455 ~~~~~l~~~----~~-~g~~G~~~a~~i~~~~~~~~~~~~~~~~  493 (517)
                      |+.+++...    ++ +|..|+|+++.+++++..++..++++|.
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999766    55 8999999999999999888765555443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00