Citrus Sinensis ID: 010123

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHccccccEEEEEccccccHHHHHHHHHccccEEEEEccccccEEEEEEEHHHcccccccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEEEEcccccccccccccccHHHHccccccccccccccHHHEccccccEEcccccccEEEcccccccccccccccccHHHccccccccccccHccHHHEHHHEccHHHHHHHHHHHHHccccHHHHHHccEEEccccHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLLLNVLTLarttmprndvvfeaddiefgnpwWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSqeagkggelthdeTTIISGaldltektaeeamtpiestfsldvnsklDWEAIGKILARghsrvpiysgnpknIIGLLLVKSLLTvraetetpvsavsirrmprvpadmplyDILNEFQKGSSHMAAVVKVKgkskksqsislgekfggngvfsgnsqlttplltndvtsettplltndvtsesvvvgidrtsrpntnnqslppqlgaaaenlpysledieeGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTmarapsswkltaqkpagaqgkqgqttkrsvesglhsvrfpgtekeallgnkq
Flexible Loop (DISEMBL)
MLLLNVLTlarttmprndVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQeagkggelthdETTIISGALDLTEKTAEEAMTPiestfsldvnsKLDWEAIGKILarghsrvpiysgnpKNIIGLLLVKSLLTVRaetetpvsavsirrmprvpaDMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSettplltndvtsesvvVGIDRtsrpntnnqslppqLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAqkpagaqgkqgqttkrsvesglhsvrfpgtekeallgnkq
Low Complexity Region (SEG)
MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAgimsgltlglmslglveleILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAvvkvkgkskksqsISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDieegvvigiiTLEDVFEELLQEEIVDETDVYVDVHKRIRVaaaaaaaSTMARAPSSWKLtaqkpagaqgkqgqttkRSVESGLHSVRFPGTEKEALLGNKQ
Disordered region (IsUnstruct)
**LLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRS*******QAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHS************ETTIISGALDLT*********PIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQ******************************************************************VV*************************LPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAA*******************************************************
Disordered Region (DISOPRED)
****NV*TLARTTMPR********DIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELE***************AILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHH***********LVS**************DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTP***********************************AENLPYSLEDIEEGVVIGIITL*****************************************************************************************
Disordered Region (DISEMBL)
MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRS********AAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAA************SISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVA**************************************ESGLHSVRFPGTEKEALLGNKQ
Disordered Region (DISPRO)
*LLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVG*DRTSR****NQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAA**********************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
Q9ZVS8	499	Putative DUF21 domain-con	yes	no	0.914	0.947	0.726	0.0
Q67XQ0	494	DUF21 domain-containing p	no	no	0.932	0.975	0.697	0.0
Q4V3C7	495	DUF21 domain-containing p	no	no	0.860	0.898	0.704	1e-179
Q9LTD8	500	DUF21 domain-containing p	no	no	0.765	0.792	0.491	1e-113
Q8VZI2	424	DUF21 domain-containing p	no	no	0.796	0.971	0.530	1e-111
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.769	0.940	0.517	1e-110
Q8RY60	527	DUF21 domain-containing p	no	no	0.831	0.815	0.477	1e-110
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.570	0.417	0.415	8e-59
Q9USJ3	679	Uncharacterized protein C	yes	no	0.580	0.441	0.391	1e-55
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.572	0.384	0.390	6e-55

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/497 (72%), Positives = 400/497 (80%), Gaps = 24/497 (4%)

Query: 1   MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSL 60
           M++L+ L L R     N  VFEA+DI FG+PWWFV  GV+C LVLFAGIMSGLTLGLMSL
Sbjct: 1   MVVLSTLALVRAAYSLNSFVFEAEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSL 60

Query: 61  GLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120
           GLVELEILQ+SG+S EK+QAAAILPVV+KQHQLLVTLLLCNA AMEALPI LDKIFHPFV
Sbjct: 61  GLVELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFV 120

Query: 121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH 180
           AVLLSVTFVLAFGEIIPQAICSRYGLAVGANF+WLVRILMIICYPIAYPIGK+LDAV+GH
Sbjct: 121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGH 180

Query: 181 HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240
           +D LFRRAQLKALVSIHSQEAGKGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLD
Sbjct: 181 NDTLFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLD 240

Query: 241 VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP 300
           VN+KLDWE IGKIL+RGHSR+P+Y GNPKNIIGLLLVKSLLTVRAETE PVS+VSIR++P
Sbjct: 241 VNTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIP 300

Query: 301 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKS--QSISLGEKFGGNGVFSGNSQLTT 358
           RVP+DMPLYDILNEFQKGSSHMAAVVKVK K KK+  Q +S GE    N  F  +S LT 
Sbjct: 301 RVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTA 360

Query: 359 PLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIE 418
           PLL ++              S  VVV ID+  +   N      Q G    +LP  LED E
Sbjct: 361 PLLKHE--------------SHDVVVDIDKVPKHVKNRGRNFQQNGTVTRDLPCLLEDNE 406

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +  VIGIITLEDVFEELLQ EIVDETDVY+DVHKR+RVAAAAAAA +         +T  
Sbjct: 407 DAEVIGIITLEDVFEELLQAEIVDETDVYIDVHKRVRVAAAAAAAVS--------SITRA 458

Query: 479 KPAGAQGKQGQTTKRSV 495
            PA  Q K GQT K+ V
Sbjct: 459 SPAEIQSKVGQTVKKLV 475

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/516 (69%), Positives = 400/516 (77%), Gaps = 34/516 (6%)

Query: 1   MLLLNVLTLAR--TTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLM 58
           M L+N +  AR  + + +++     + I FG+  W  YAG+SC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query: 59  SLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHP 118
           SLGLVELEILQRSGT  EK+QAAAI PVVQKQHQLLVTLLLCNA AME LPIYLDK+F+ 
Sbjct: 61  SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query: 119 FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL 178
           +VA++LSVTFVLAFGE+IPQAIC+RYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct: 121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query: 179 GHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238
           GH+DALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query: 239 LDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRR 298
           LDVNSKLDWEA+GKILARGHSRVP+YSGNPKN+IGLLLVKSLLTVR ETET VSAV IRR
Sbjct: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query: 299 MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTT 358
           +PRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK   S  L E        S +S LT 
Sbjct: 301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDE----SNDSDLTA 356

Query: 359 PLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIE 418
           PL           LL  +   ++V+V ID+      N QS      +      ++ E IE
Sbjct: 357 PL-----------LLKREGNHDNVIVTIDK-----ANGQSFFQNNESGPHGFSHTSEAIE 400

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +G VIGIITLEDVFEELLQEEIVDETD YVDVHKRIRVAAAAAA+S      S  KL AQ
Sbjct: 401 DGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSR-KLLAQ 459

Query: 479 KPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLG 514
           K  G Q KQGQT K            PG E++ +LG
Sbjct: 460 KGTGGQNKQGQTNK-----------VPGQEQDKMLG 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 327/464 (70%), Positives = 370/464 (79%), Gaps = 19/464 (4%)

Query: 21  FEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQA 80
            +++ I FG+  W  YAG+SC LVLFAGIMSGLTLGLMSLGLVELEILQRSGT  EK+Q+
Sbjct: 22  LQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQS 81

Query: 81  AAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAI 140
           AAI PVVQKQHQLLVTLLL NA AME LPIYLDKIF+ +VA++LSVTFVL  GE+IPQAI
Sbjct: 82  AAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAI 141

Query: 141 CSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQE 200
           C+RYGLAVGAN VWLVRILM++ YPI++PI K+LD VLGH+D LFRRAQLKALVSIH + 
Sbjct: 142 CTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDPLFRRAQLKALVSIHGEA 201

Query: 201 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR 260
           AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFSLDVNSKLD EA+ KI ARGHSR
Sbjct: 202 AGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSR 261

Query: 261 VPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSS 320
           VP+YS NPKN+IGLLLVKSLLTVR ET T VSAV IRR+PRVPA+MPLYDILNEFQKGSS
Sbjct: 262 VPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSS 321

Query: 321 HMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSE 380
           HMAAVVKVKGKSK   S    E  G + V S NS+LT PL           LL  +   +
Sbjct: 322 HMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTAPL-----------LLKREGNHD 370

Query: 381 SVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEI 440
           SV+V ID+      N QS   +  A  +   ++ E+IE+G VIGIITLEDVFEELLQEEI
Sbjct: 371 SVIVRIDK-----ANGQSFISE--AGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEI 423

Query: 441 VDETDVYVDVHKRIRVAAAAAAA-STMARAPSSWKLTAQKPAGA 483
           VDETD Y+DVHKRIRVA  AA A S++ARAPS  +L   K +G 
Sbjct: 424 VDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGSGG 467

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  410 bits (1055), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/435 (49%), Positives = 289/435 (66%), Gaps = 39/435 (8%)

Query: 23  ADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAA 82
           A+D+      ++VY  V   LV+FAG+MSGLTLGLMSL +VELE++ ++G   +++ A  
Sbjct: 3   ANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEK 62

Query: 83  ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142
           ILP+V+ QH LL TLL+ NA AMEALPI++D +   + A+L+SVT +LAFGEIIPQA+CS
Sbjct: 63  ILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCS 122

Query: 143 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLG-HHDALFRRAQLKALVSIHSQEA 201
           RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  H  L  RA+LK+LV +H  EA
Sbjct: 123 RYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEA 182

Query: 202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
           GKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + +G I + GHSR+
Sbjct: 183 GKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRI 242

Query: 262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
           PIYS NP  IIG +LVK+L+ VR E ET +  + IRRMP+V  ++PLYDILN FQ G SH
Sbjct: 243 PIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSH 302

Query: 322 MAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES 381
           MAAVV  K  +  +  +   +   G+     N  L+ P L +  TS  +P+   D  S+ 
Sbjct: 303 MAAVVGTKNHTNTNTPVH-EKSINGSPNKDANVFLSIPALNSSETSHQSPIRYIDSISD- 360

Query: 382 VVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIV 441
                                               E+  VIGIITLEDV EEL+QEEI 
Sbjct: 361 ------------------------------------EDEEVIGIITLEDVMEELIQEEIY 384

Query: 442 DETDVYVDVHKRIRV 456
           DETD YV++HKRI +
Sbjct: 385 DETDQYVELHKRITI 399

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  403 bits (1036), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/422 (53%), Positives = 286/422 (67%), Gaps = 10/422 (2%)

Query: 30  NPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQK 89
           +P +F++  V   LVLFAG+MSGLTLGLMSL LV+LE+L +SGT   ++ AA ILPVV+ 
Sbjct: 9   SPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKN 68

Query: 90  QHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVG 149
           QH LLVTLL+CNA AME LPI+LD +   + A+L+SVT +L FGEIIPQ+ICSRYGLA+G
Sbjct: 69  QHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIG 128

Query: 150 ANFVWLVRILMIICYPIAYPIGKILDAVLGHHDA-LFRRAQLKALVSIHSQEAGKGGELT 208
           A     VR+L+ IC P+A+PI K+LD +LGH  A LFRRA+LK LV  H  EAGKGGELT
Sbjct: 129 ATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELT 188

Query: 209 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP 268
           HDETTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + +  IL +GHSRVP+Y   P
Sbjct: 189 HDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQP 248

Query: 269 KNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKV 328
            NIIGL+LVK+LLT+  + E PV  V+IRR+PRVP  +PLYDILNEFQKG SHMA VV+ 
Sbjct: 249 TNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQ 308

Query: 329 KGKSKKSQSISLGEKFGGNGVFS-GNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGID 387
             K     S +   K     V S G       +L    + +      N  +S     G  
Sbjct: 309 CDKIHPLPSKNGSVKEARVDVDSEGTPTPQERMLRTKRSLQKWKSFPNRASSFK---GGS 365

Query: 388 RTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVY 447
           ++ + + +N +   QL      LP   E+ EE V  GIIT+EDV EELLQEEI DETD +
Sbjct: 366 KSKKWSKDNDADILQLNGNP--LPKLAEE-EEAV--GIITMEDVIEELLQEEIFDETDHH 420

Query: 448 VD 449
            +
Sbjct: 421 FE 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/429 (51%), Positives = 286/429 (66%), Gaps = 31/429 (7%)

Query: 33  WFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQ 92
           +F++  V  +LVLFAG+MSGLTLGLMS+ LV+LE+L +SGT  ++  AA ILPVV+ QH 
Sbjct: 12  FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query: 93  LLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANF 152
           LL TLL+CNA AMEALPI+LD +   + A+L+SVT +L FGEIIPQ++CSR+GLA+GA  
Sbjct: 72  LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query: 153 VWLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEAGKGGELTHDE 211
              VR+L+ IC P+A+PI K+LD +LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query: 212 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNI 271
           TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + +  IL +GHSRVP+Y     NI
Sbjct: 192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query: 272 IGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGK 331
           IGL+LVK+LLT+  + E  V  V+IRR+PRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query: 332 SKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESV--------- 382
               QS             +  +  T   +  DV  E +P  T      S+         
Sbjct: 312 IHPLQS-------------NDAANETVNEVRVDVDYERSPQETKLKRRRSLQKWKSFPNR 358

Query: 383 --VVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEI 440
              +G  R+ R + +N +   QL       P    D EE  V GIIT+EDV EELLQEEI
Sbjct: 359 ANSLG-SRSKRWSKDNDADILQLNEH----PLPKLDEEEDAV-GIITMEDVIEELLQEEI 412

Query: 441 VDETDVYVD 449
            DETD + +
Sbjct: 413 FDETDHHFE 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/461 (47%), Positives = 300/461 (65%), Gaps = 31/461 (6%)

Query: 23  ADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAA 82
           + DI      + +Y  +   LV FAG+M+GLTLGLMSLGLV+LE+L +SG   ++  A  
Sbjct: 2   SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query: 83  ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142
           I PVV+ QH LL TLL+ N+ AMEALPI+LDKI  P++A+LLSVT +L FGEI+PQA+C+
Sbjct: 62  IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query: 143 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEA 201
           RYGL VGA     VR+L+++ +PI+YPI K+LD +LG  H  L RRA+LK  V+ H  EA
Sbjct: 122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query: 202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
           GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct: 182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query: 262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
           P+Y  NP +IIGL+LVK+LL V A  E P+  +S+R++PRV   MPLYDILNEFQKG SH
Sbjct: 242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query: 322 MAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES 381
           +A V K   + ++S   S       NG+    ++ T   L  D  S   P    +V SE 
Sbjct: 302 IAVVYKDLDEQEQSPETS------ENGIERRKNKKTKDELFKD--SCRKPKAQFEV-SEK 352

Query: 382 VVVGIDRTSRPNTNNQSLPPQLGAAAENL------------PYSLEDIEEGV-------- 421
            V  I+     +  +++   Q G+   +L             + + DIE           
Sbjct: 353 EVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNE 412

Query: 422 -VIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAA 461
            V+G+IT+EDV EELLQEEI+DETD YV++H RIRV   A+
Sbjct: 413 EVVGVITMEDVIEELLQEEILDETDEYVNIHNRIRVNMHAS 453

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  228 bits (581), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 125/301 (41%), Positives = 184/301 (61%), Gaps = 6/301 (1%)

Query: 36  YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQK-QHQLL 94
           Y  +S +LVL  G+ +GLTLGLM    V L+++  SG+++EK+ A  +L ++ + +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 95  VTLLLCNACAMEALPIYLDKIFHP-FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFV 153
           VTLLL N    E LPI LD+     + AV+ S   ++ FGEIIPQ++C +YGL VGA F 
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 154 WLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEAGKGGELTHDET 212
             V +LM + YP+AYPI  +LD +LG  H  +++++ LK LV++H     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 213 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNI 271
           TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+PI+  N P N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 272 IGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGK 331
           IG+LLV+ L++   +   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct: 302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query: 332 S 332
           S
Sbjct: 362 S 362

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/317 (39%), Positives = 191/317 (60%), Gaps = 17/317 (5%)

Query: 39  VSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQK-QHQLLVTL 97
           +S VL+L  G+ +GLT+GLM    + L++L++SG ++E+  A  +L ++++ +H +LVTL
Sbjct: 68  ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTL 127

Query: 98  LLCNACAMEALPIYLDKIFHP-FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLV 156
           LL N    E LPI  D I    + AVL+S   ++ FGE+IPQA C RYGL++GA    +V
Sbjct: 128 LLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIV 187

Query: 157 RILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEAGKGGELTHDETTII 215
             +M + +PIAYP   ILDA LG     +++++ LK LV++H ++ G   +L  DE TII
Sbjct: 188 LFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLH-RDLGI-DKLNQDEVTII 245

Query: 216 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYS-GNPKNIIGL 274
           +  LDL EK AE  MTPIE  F+L ++  LD + IG+I+  G+SR+P++  G P + IG+
Sbjct: 246 TAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGM 305

Query: 275 LLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKK 334
           LL K+L+    + + PV   ++  +P+   +    D+LN  Q+G SHM  +         
Sbjct: 306 LLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILI--------- 356

Query: 335 SQSISLGEKFGGNGVFS 351
             S S GE  G  GV +
Sbjct: 357 --SNSPGEPHGAIGVIT 371

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 121/310 (39%), Positives = 182/310 (58%), Gaps = 14/310 (4%)

Query: 31  PWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQ 90
           P W + A +  VL+  +GI SGL LGLM+L  +EL ++QR GT  EK+ A+ I PV +K 
Sbjct: 178 PIW-LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKIEPVRRKG 236

Query: 91  HQLLVTLLLCNACAMEALPIYLDKIFHP-FVAVLLSVTFVLAFGEIIPQAICSRYGLAVG 149
           + LL +LLL N      L   LD++      AVL S T ++  GEI+PQA+CSR+GLAVG
Sbjct: 237 NYLLCSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCSRHGLAVG 296

Query: 150 ANFVWLVRILMIICYPIAYPIGKILDAVLGHH-DALFRRAQLKALVSIHSQEAGKGGELT 208
           AN +WL RI M++ +P+AYP+ ++LD  LG     ++ R +L  ++ +    +G    + 
Sbjct: 297 ANTLWLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYSG----IV 352

Query: 209 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP 268
            +E  II GAL+L  KT E+ MT +E  F L  ++ LD+  +  I+  G++R+P+Y    
Sbjct: 353 REEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRIPVYENER 412

Query: 269 KNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVP-----ADMPLYDILNEFQKGSSHMA 323
            NI+ +L VK L  V  +  TP+S ++  R    P     +D  L  +L EF+KG SH+A
Sbjct: 413 SNIVDILYVKDLAFVDPDDCTPLSTIT--RFYSHPLHFVFSDTKLDAVLEEFKKGKSHLA 470

Query: 324 AVVKVKGKSK 333
            V KV  + +
Sbjct: 471 IVQKVNSEGE 480

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
225436964	504	PREDICTED: putative DUF21 domain-contain	0.970	0.996	0.789	0.0
255584700	477	conserved hypothetical protein [Ricinus	0.918	0.995	0.777	0.0
255551477	502	conserved hypothetical protein [Ricinus	0.967	0.996	0.730	0.0
225432520	505	PREDICTED: DUF21 domain-containing prote	0.969	0.992	0.721	0.0
224102601	500	predicted protein [Populus trichocarpa]	0.912	0.944	0.765	0.0
296086719	448	unnamed protein product [Vitis vinifera]	0.864	0.997	0.802	0.0
224107237	502	predicted protein [Populus trichocarpa]	0.928	0.956	0.743	0.0
449465210	496	PREDICTED: DUF21 domain-containing prote	0.936	0.975	0.734	0.0
449528085	496	PREDICTED: DUF21 domain-containing prote	0.936	0.975	0.734	0.0
356564538	493	PREDICTED: DUF21 domain-containing prote	0.911	0.955	0.740	0.0

>gi|225436964|ref|XP_002276672.1| PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera]

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/519 (78%), Positives = 441/519 (84%), Gaps = 17/519 (3%)

Query: 1   MLLLNVLTLARTTMPRN-DVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMS 59
           M LLN LTL   +MP   + V   +DIEFG+ WWFVYAGVSC LVLFAGIMSGLTLGLMS
Sbjct: 1   MSLLNALTLG--SMPTTGEFVLRTEDIEFGSLWWFVYAGVSCFLVLFAGIMSGLTLGLMS 58

Query: 60  LGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPF 119
           LGLVELEILQRSGTS EK+QAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPF
Sbjct: 59  LGLVELEILQRSGTSAEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPF 118

Query: 120 VAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLG 179
           VA+LLSVTFVLAFGEIIPQAIC+RYGL+VGANFVWLVRILMIICYPIA+PIGK+LDAVLG
Sbjct: 119 VAILLSVTFVLAFGEIIPQAICTRYGLSVGANFVWLVRILMIICYPIAFPIGKVLDAVLG 178

Query: 180 HHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSL 239
           H+DALFRRAQLKALVSIH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSL
Sbjct: 179 HNDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSL 238

Query: 240 DVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM 299
           DVNSKLDWEAIGKILARGHSRVP+YSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIR++
Sbjct: 239 DVNSKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRKI 298

Query: 300 PRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTP 359
           PRVPADMPLYDILNEFQKGSSHMAAVVKVKGK+K       GE+F  N V +GNSQ TTP
Sbjct: 299 PRVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQYTTP 358

Query: 360 LLTNDVTSETTPLLTNDVTSESVVVGIDRTSRP-NTNNQSLPPQLGAAAENLPYSLEDIE 418
           LL ND          ND  SE+VVV ID+  +P NTN Q+   Q GA   +LP+  EDIE
Sbjct: 359 LLAND----------ND-KSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPEDIE 407

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +G VIGIITLEDVFEELLQEEIVDETDVYVDVHKRI   AAAAAAS +ARAPSS +LT Q
Sbjct: 408 DGEVIGIITLEDVFEELLQEEIVDETDVYVDVHKRI-RVAAAAAASFVARAPSSRRLTGQ 466

Query: 479 KPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ 517
           KPAG Q +QG T K+S E      + PG   E LLG+K+
Sbjct: 467 KPAGGQSRQG-TPKKSAEDDSFWAKSPGNLGETLLGSKR 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584700|ref|XP_002533071.1| conserved hypothetical protein [Ricinus communis] gi|223527135|gb|EEF29310.1| conserved hypothetical protein [Ricinus communis]

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/494 (77%), Positives = 416/494 (84%), Gaps = 19/494 (3%)

Query: 1   MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSL 60
           MLLLN LTLART    N +VFEADDI+F   WWF+YAG+SC+LVLFAGIMSGLTLGLMSL
Sbjct: 1   MLLLNALTLARTMFSINHIVFEADDIKFATLWWFIYAGISCLLVLFAGIMSGLTLGLMSL 60

Query: 61  GLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120
           GLVELEILQRSG+ TEK+QAA ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV
Sbjct: 61  GLVELEILQRSGSFTEKKQAATILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120

Query: 121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH 180
           AV+LSVTFVLAFGEIIPQAICSRYGL VGAN VWLVRILM ICYPIAYPIGK+LDA LGH
Sbjct: 121 AVVLSVTFVLAFGEIIPQAICSRYGLYVGANLVWLVRILMFICYPIAYPIGKVLDAALGH 180

Query: 181 HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240
            DALFRRAQLKALVSIH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD
Sbjct: 181 DDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240

Query: 241 VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP 300
           VNSKLDWEAIGKILARGHSRVP+YSG PKNIIGLLLVKSLLTVRAETETPVSAVSIRR+P
Sbjct: 241 VNSKLDWEAIGKILARGHSRVPVYSGCPKNIIGLLLVKSLLTVRAETETPVSAVSIRRIP 300

Query: 301 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPL 360
           RVP++MPLYDILNEFQKGSSHMAAVVKV  KSK +Q  S GEKF      +G+SQL  PL
Sbjct: 301 RVPSNMPLYDILNEFQKGSSHMAAVVKVHAKSKNAQPTSDGEKFNEIKFANGDSQLNAPL 360

Query: 361 LTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEG 420
           LT            +D  SE +++ +++ +RP T  Q           ++P   ED+E+G
Sbjct: 361 LTK-----------HDGKSEHLLIDVEKAARPMTIKQQ-------KTHDIPRLSEDVEDG 402

Query: 421 VVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKP 480
            VIGIITLEDVFEELLQEEIVDETDVYVDVHKR     AAAAAS +ARAPS+ +L   KP
Sbjct: 403 EVIGIITLEDVFEELLQEEIVDETDVYVDVHKR-IRVVAAAAASYVARAPSNRRLPGPKP 461

Query: 481 AGAQGKQGQTTKRS 494
           AGAQGKQ QTTK+S
Sbjct: 462 AGAQGKQSQTTKKS 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551477|ref|XP_002516784.1| conserved hypothetical protein [Ricinus communis] gi|223543872|gb|EEF45398.1| conserved hypothetical protein [Ricinus communis]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/519 (73%), Positives = 428/519 (82%), Gaps = 19/519 (3%)

Query: 1   MLLLNVLTLAR--TTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLM 58
           M L+N +   R  T + +++ V E   I FG+ WWF+YAG+SC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLVNAVMATRMLTMLGQSNGVSEG--IPFGSIWWFIYAGISCFLVLFAGIMSGLTLGLM 58

Query: 59  SLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHP 118
           SLGLVELEILQRSGTS+EK+QAAAILPVVQKQHQLLVTLLLCNA AMEALPIYLDK+F+ 
Sbjct: 59  SLGLVELEILQRSGTSSEKKQAAAILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKLFNQ 118

Query: 119 FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL 178
           +VA++LSVTFVL FGE+IPQ+ICSRYGLAVGANFVWLVRILMIICYPI+YPIGKILD VL
Sbjct: 119 YVAIILSVTFVLFFGEVIPQSICSRYGLAVGANFVWLVRILMIICYPISYPIGKILDWVL 178

Query: 179 GHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238
           GH++ALFRRAQLK LVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 179 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238

Query: 239 LDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRR 298
           LDVNSKLDWEA+GK+LARGHSRVP+YSGNPKNIIGLLLVKSLLTVR ETETPVSAVSIRR
Sbjct: 239 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 298

Query: 299 MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTT 358
           +PRVP+DMPLYDILNEFQKGSSHMAAVVK K KSK    ++ GEK   N   +G+S+LT 
Sbjct: 299 IPRVPSDMPLYDILNEFQKGSSHMAAVVKSKAKSKI--PMTTGEKQEENKATAGDSELTI 356

Query: 359 PLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIE 418
           PL           L+  D   ++V++ +DR SR ++N Q+   +  AA   L  S EDIE
Sbjct: 357 PL-----------LVKQDEKLDTVILDMDRVSRLSSNKQTSSQRFDAATNGLVQSSEDIE 405

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +G VIGIITLEDVFEELLQEEIVDETD YVDVHKRI   AAAAAAS++ARAPSS +LTA 
Sbjct: 406 DGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRI-RVAAAAAASSVARAPSSRRLTAN 464

Query: 479 KPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ 517
           K  GAQGK GQ  ++S E+   S R  GT  E L GNK+
Sbjct: 465 KGTGAQGKPGQALRKS-ENDSSSPRLQGTGGEPLAGNKR 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432520|ref|XP_002280174.1| PREDICTED: DUF21 domain-containing protein At4g14240 [Vitis vinifera]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/521 (72%), Positives = 424/521 (81%), Gaps = 20/521 (3%)

Query: 1   MLLLNVLTLARTTMPRNDVVFEA---DDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGL 57
           M L+N + +AR  M   ++  E+    DI FG+ W+F+Y G+ C LVLFAGIMSGLTLGL
Sbjct: 1   MQLINAVAIAR--MAARNLGAESLGGGDIAFGSLWFFIYVGICCFLVLFAGIMSGLTLGL 58

Query: 58  MSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFH 117
           MSLG V+LEILQRSGTS EK+QAAAILPVVQKQHQLLVTLLLCNAC+MEALP+YLDK+F+
Sbjct: 59  MSLGRVDLEILQRSGTSDEKKQAAAILPVVQKQHQLLVTLLLCNACSMEALPLYLDKLFN 118

Query: 118 PFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAV 177
            FVA++LSVTFVLAFGE+IPQAICSRYGL+VGANFVWLVRILMIICYPIAYPIGKILD V
Sbjct: 119 QFVAIVLSVTFVLAFGEVIPQAICSRYGLSVGANFVWLVRILMIICYPIAYPIGKILDWV 178

Query: 178 LGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237
           LGH++ALFRRAQLKALVSIH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 179 LGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 238

Query: 238 SLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIR 297
           SLDVNSKLDWEA+GKILARGHSRVP+YSGNPKN+IGLLLVKSLLTVRAETETPVSAVSIR
Sbjct: 239 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRAETETPVSAVSIR 298

Query: 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLT 357
           R+PRVPADMPLYDILNEFQKGSSHMAAVVK KG++K +  +  G+    N +   +SQLT
Sbjct: 299 RIPRVPADMPLYDILNEFQKGSSHMAAVVKPKGRNKNAPQVMDGKITEENKITGADSQLT 358

Query: 358 TPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPN-TNNQSLPPQLGAAAENLPYSLED 416
           TPLL+             D   ES+VV I++ SRP   N QS      AA   LP   ED
Sbjct: 359 TPLLSK-----------QDEKLESIVVDIEKASRPTIINRQS--QHSDAATNGLPRLSED 405

Query: 417 IEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLT 476
           IE+G VIGIITLEDVFEELLQEEIVDETD +VDVHK     AAAAAAS++ARAPS  +LT
Sbjct: 406 IEDGEVIGIITLEDVFEELLQEEIVDETDEFVDVHK-RIRVAAAAAASSIARAPSIRRLT 464

Query: 477 AQKPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ 517
             K AG Q KQ Q+ K+S+E   +S R  G   E+LLGNK+
Sbjct: 465 GHKGAGGQTKQVQSPKKSIEEDSNSARLHGNPGESLLGNKR 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102601|ref|XP_002312743.1| predicted protein [Populus trichocarpa] gi|222852563|gb|EEE90110.1| predicted protein [Populus trichocarpa]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/487 (76%), Positives = 409/487 (83%), Gaps = 15/487 (3%)

Query: 24  DDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAI 83
           D I FG+  WFVYAG+SC LV+FAGIMSGLTLGLMSLGLV+LEILQRSGTSTEK+QAAAI
Sbjct: 23  DGIPFGSVSWFVYAGISCFLVIFAGIMSGLTLGLMSLGLVDLEILQRSGTSTEKKQAAAI 82

Query: 84  LPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSR 143
           LPVVQKQHQLLVTLLLCNA AMEALPIYLDK+F+ +VA++LSVTFVLAFGE+IPQAIC+R
Sbjct: 83  LPVVQKQHQLLVTLLLCNAIAMEALPIYLDKLFNQYVAIILSVTFVLAFGEVIPQAICTR 142

Query: 144 YGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAGK 203
           YGLAVGANFVWLVRILMI CYP+AYPIGK+LD VLGH++ALFRRAQLKALVSIHSQEAGK
Sbjct: 143 YGLAVGANFVWLVRILMITCYPVAYPIGKVLDCVLGHNEALFRRAQLKALVSIHSQEAGK 202

Query: 204 GGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI 263
           GGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA+GKILARGHSRVP+
Sbjct: 203 GGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPV 262

Query: 264 YSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMA 323
           YSGNPKNIIGLLLVKSLLTVR ETETPVSAVSIRR+PRVP+DMPLYDILNEFQKGSSHMA
Sbjct: 263 YSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMA 322

Query: 324 AVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVV 383
           AVVK KGKSK       GE+  G+ V   +SQLTTPLL+             D  S+SVV
Sbjct: 323 AVVKAKGKSKDLPPAIDGEEQEGSKVTGRDSQLTTPLLSK-----------QDEKSDSVV 371

Query: 384 VGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDE 443
           V IDR SR + +  S   +   +   LP   EDIE+G VIGIITLEDVFEELLQEEIVDE
Sbjct: 372 VDIDRVSRSSRHPSS--QRNDTSTNGLPQLSEDIEDGEVIGIITLEDVFEELLQEEIVDE 429

Query: 444 TDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKPAGAQGKQGQTTKRSVESGLHSVR 503
           TD YVDVHKRI   AAAAAAS++ARAPSS +LTA K AG Q K GQT K+S E+   + R
Sbjct: 430 TDEYVDVHKRI-RVAAAAAASSVARAPSSRRLTANKGAGGQIKSGQTLKKS-ENDSSATR 487

Query: 504 FPGTEKE 510
             GT  E
Sbjct: 488 LQGTAGE 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086719|emb|CBI32354.3| unnamed protein product [Vitis vinifera]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/461 (80%), Positives = 397/461 (86%), Gaps = 14/461 (3%)

Query: 58  MSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFH 117
           MSLGLVELEILQRSGTS EK+QAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFH
Sbjct: 1   MSLGLVELEILQRSGTSAEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFH 60

Query: 118 PFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAV 177
           PFVA+LLSVTFVLAFGEIIPQAIC+RYGL+VGANFVWLVRILMIICYPIA+PIGK+LDAV
Sbjct: 61  PFVAILLSVTFVLAFGEIIPQAICTRYGLSVGANFVWLVRILMIICYPIAFPIGKVLDAV 120

Query: 178 LGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237
           LGH+DALFRRAQLKALVSIH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 121 LGHNDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 180

Query: 238 SLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIR 297
           SLDVNSKLDWEAIGKILARGHSRVP+YSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIR
Sbjct: 181 SLDVNSKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIR 240

Query: 298 RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLT 357
           ++PRVPADMPLYDILNEFQKGSSHMAAVVKVKGK+K       GE+F  N V +GNSQ T
Sbjct: 241 KIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQYT 300

Query: 358 TPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRP-NTNNQSLPPQLGAAAENLPYSLED 416
           TPLL ND          ND  SE+VVV ID+  +P NTN Q+   Q GA   +LP+  ED
Sbjct: 301 TPLLAND----------ND-KSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPED 349

Query: 417 IEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLT 476
           IE+G VIGIITLEDVFEELLQEEIVDETDVYVDVHKRI   AAAAAAS +ARAPSS +LT
Sbjct: 350 IEDGEVIGIITLEDVFEELLQEEIVDETDVYVDVHKRI-RVAAAAAASFVARAPSSRRLT 408

Query: 477 AQKPAGAQGKQGQTTKRSVESGLHSVRFPGTEKEALLGNKQ 517
            QKPAG Q +QG T K+S E      + PG   E LLG+K+
Sbjct: 409 GQKPAGGQSRQG-TPKKSAEDDSFWAKSPGNLGETLLGSKR 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107237|ref|XP_002314418.1| predicted protein [Populus trichocarpa] gi|222863458|gb|EEF00589.1| predicted protein [Populus trichocarpa]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/496 (74%), Positives = 414/496 (83%), Gaps = 16/496 (3%)

Query: 23  ADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAA 82
            D+I FG+  WF YAG+SC LVLFAGIMSGLTLGLMSLGLV+LEILQRSGTSTEK+QAAA
Sbjct: 22  GDEIPFGSFSWFAYAGISCFLVLFAGIMSGLTLGLMSLGLVDLEILQRSGTSTEKKQAAA 81

Query: 83  ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142
           ILPVVQKQHQLLVTLLLCNA +MEALPIYLDK+F+ +VA++LSVTFVLAFGE+IPQ+IC+
Sbjct: 82  ILPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLAFGEVIPQSICT 141

Query: 143 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEAG 202
           RYGLAVGANFVWLVRILMI+CYPI+YPIGK+LD VLGH++ALFRRAQLKALVSIH  EAG
Sbjct: 142 RYGLAVGANFVWLVRILMILCYPISYPIGKVLDCVLGHNEALFRRAQLKALVSIHGLEAG 201

Query: 203 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP 262
           KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA+GK+LARGHSRVP
Sbjct: 202 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKVLARGHSRVP 261

Query: 263 IYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHM 322
           +YSGNPKNIIGLLLVKSLLTVR ETETPVSAVSIRR+PRVP+DMPLYDILNEFQKGSSHM
Sbjct: 262 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 321

Query: 323 AAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESV 382
           AAVVK KGKSK       G++  GN V    SQLTTPLL+          + N+   +SV
Sbjct: 322 AAVVKAKGKSKALPPTIDGKEHEGNKVTGKESQLTTPLLS----------MPNE-KLDSV 370

Query: 383 VVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVD 442
           VV +DR SRP  + Q    +  A+ + +    EDIE+G VIGIITLEDVFEELLQEEIVD
Sbjct: 371 VVDMDRVSRP--SRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITLEDVFEELLQEEIVD 428

Query: 443 ETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKPAGA-QGKQGQTTKRSVESGLHS 501
           ETD YVDVHKRI   AAAAAAS++ARAPSS +LTA K +G  Q K GQT K+S E+   +
Sbjct: 429 ETDEYVDVHKRI-RVAAAAAASSVARAPSSRRLTANKGSGGHQSKPGQTLKKS-ENDSSA 486

Query: 502 VRFPGTEKEALLGNKQ 517
            R  GT  E  LGNK+
Sbjct: 487 TRLQGTAGEPFLGNKR 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465210|ref|XP_004150321.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/498 (73%), Positives = 408/498 (81%), Gaps = 14/498 (2%)

Query: 1   MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSL 60
           M  +N + L R     + +  +A +I FG+  WF YAG+SCV VLFAGIMSGLTLGLMSL
Sbjct: 1   MHFINAVMLTRMLTRNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGLMSL 60

Query: 61  GLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120
           GLV+LEILQRSGT+ EK+QAAAILPVVQKQHQLLVTLLLCNA AMEALPIYLDK+F+ +V
Sbjct: 61  GLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFNQYV 120

Query: 121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH 180
           A++LSVTFVLAFGE+IPQAIC+RYGLAVGANFV LVRILM+ICYPIAYPIGKILD +LGH
Sbjct: 121 AIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCLLGH 180

Query: 181 HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240
           ++ALFRRAQLKALVSIHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD
Sbjct: 181 NEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240

Query: 241 VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP 300
           VNSKLDWEA+GKILARGHSRVP+YSGNPKNIIGLLLVKSLLTVR ETETPVSAVSIRR+P
Sbjct: 241 VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP 300

Query: 301 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPL 360
           RVP+DMPLYDILNEFQKGSSHMAAVVKVKGK+K       GE+F  N      SQLT PL
Sbjct: 301 RVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLTAPL 360

Query: 361 LTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNT-NNQSLPPQLGAAAENLP-YSLEDIE 418
           L             +D  S+SVV+ IDRTS+ +  + Q    +  A++ N P +S EDIE
Sbjct: 361 LRK-----------HDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIE 409

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +G VIGIITLEDVFEELLQEEIVDETD YVDVHKRIRVAAAAAA+S      S  +LTAQ
Sbjct: 410 DGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAP-SIRRLTAQ 468

Query: 479 KPAGAQGKQGQTTKRSVE 496
           K    Q KQ QT K+S E
Sbjct: 469 KGGQHQTKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528085|ref|XP_004171037.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/498 (73%), Positives = 408/498 (81%), Gaps = 14/498 (2%)

Query: 1   MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSL 60
           M  +N + L R     + +  +A +I FG+  WF YAG+SCV VLFAGIMSGLTLGLMSL
Sbjct: 1   MHFINAVMLTRMLTRNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGLMSL 60

Query: 61  GLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120
           GLV+LEILQRSGT+ EK+QAAAILPVVQKQHQLLVTLLLCNA AMEALPIYLDK+F+ +V
Sbjct: 61  GLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFNQYV 120

Query: 121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH 180
           A++LSVTFVLAFGE+IPQAIC+RYGLAVGANFV LVRILM+ICYPIAYPIGKILD +LGH
Sbjct: 121 AIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCLLGH 180

Query: 181 HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240
           ++ALFRRAQLKALVSIHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD
Sbjct: 181 NEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240

Query: 241 VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP 300
           VNSKLDWEA+GKILARGHSRVP+YSGNPKNIIGLLLVKSLLTVR ETETPVSAVSIRR+P
Sbjct: 241 VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP 300

Query: 301 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPL 360
           RVP+DMPLYDILNEFQKGSSHMAAVVKVKGK+K       GE+F  N      SQLT PL
Sbjct: 301 RVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLTAPL 360

Query: 361 LTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNT-NNQSLPPQLGAAAENLP-YSLEDIE 418
           L             +D  S+SVV+ IDRTS+ +  + Q    +  A++ N P +S EDIE
Sbjct: 361 LRK-----------HDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIE 409

Query: 419 EGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQ 478
           +G VIGIITLEDVFEELLQEEIVDETD YVDVHKRIRVAAAAAA+S      S  +LTAQ
Sbjct: 410 DGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAP-SIRRLTAQ 468

Query: 479 KPAGAQGKQGQTTKRSVE 496
           K    Q KQ QT K+S E
Sbjct: 469 KGGQHQTKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564538|ref|XP_003550510.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/485 (74%), Positives = 404/485 (83%), Gaps = 14/485 (2%)

Query: 20  VFEADDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQ 79
           V  ++ I F + WWFVYAG+SC LVLFAGIMSGLTLGLMSLGLV+LEIL+RSG+  EK Q
Sbjct: 21  VLCSESIPFRSVWWFVYAGISCFLVLFAGIMSGLTLGLMSLGLVDLEILERSGSPVEKMQ 80

Query: 80  AAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQA 139
           AA ILPVV+KQHQLLVTLLLCNA AMEALP+YLDK+F+ FVA++LSVTFVL FGE+IPQA
Sbjct: 81  AAVILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLFNQFVAIILSVTFVLFFGEVIPQA 140

Query: 140 ICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQ 199
           ICSRYGLAVGANF WLVRILMIICYP++YP+GK+LD +LGH++ALFRRAQLKALVSIHSQ
Sbjct: 141 ICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDHLLGHNEALFRRAQLKALVSIHSQ 200

Query: 200 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHS 259
           EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA+GK+LARGHS
Sbjct: 201 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKVLARGHS 260

Query: 260 RVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGS 319
           RVP+YSGNP+NIIGLLLVKSLLTVR ETETPVSAVSIRR+PRVP+DMPLYDILNEFQKGS
Sbjct: 261 RVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGS 320

Query: 320 SHMAAVVKVKGKSKKSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTS 379
           SHMAAVVK +GK K++  I   EK   N    G+SQLTTPLL              D  S
Sbjct: 321 SHMAAVVKARGKGKETPQIIDEEKNEENESIGGDSQLTTPLLQK-----------QDAKS 369

Query: 380 ESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEE 439
            SVVV I + S+P++ N+    Q      N P S E+IE+G VIGIITLEDVFEELLQEE
Sbjct: 370 GSVVVDIAKPSKPSSINKLSGLQRSDGTTNGPSS-ENIEDGEVIGIITLEDVFEELLQEE 428

Query: 440 IVDETDVYVDVHKRIRVAAAAAAASTMARAPSSWKLTAQKPAGAQGKQGQTTKRSV-ESG 498
           IVDETD YVDVHKRI   AAAAAAS++ARAPSS +LT QK AG Q K GQ  K+S  E+G
Sbjct: 429 IVDETDEYVDVHKRI-RVAAAAAASSVARAPSSRRLTNQKGAGIQSKPGQAQKKSAEENG 487

Query: 499 LHSVR 503
           L+S +
Sbjct: 488 LNSTK 492

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.880	0.911	0.663	1.5e-152
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.829	0.868	0.607	5.9e-128
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.793	0.828	0.595	1.3e-118
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.562	0.687	0.565	7.8e-92
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.702	0.726	0.463	1.9e-91
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.568	0.693	0.569	4.9e-91
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.833	0.817	0.431	3.9e-83
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.618	0.446	0.375	7.8e-62
POMBASE|SPCC4B3.03c	679	SPCC4B3.03c "mitochondrial mor	0.589	0.449	0.362	4.2e-57
SGD|S000005421	706	MAM3 "Protein required for nor	0.551	0.403	0.381	8.8e-57

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 313/472 (66%), Positives = 349/472 (73%)

Query:     1 MLLLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXX 60
             M++L+ L L R     N  VFEA+DI FG+PWWFV  GV+C LVLFA             
Sbjct:     1 MVVLSTLALVRAAYSLNSFVFEAEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSL 60

Query:    61 XXXXXXILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFV 120
                   ILQ+SG+S EK+QAAAILPVV+KQHQLLVTLLLCNA AMEALPI LDKIFHPFV
Sbjct:    61 GLVELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFV 120

Query:   121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH 180
             AVLLSVTFVLAFGEIIPQAICSRYGLAVGANF+WLVRILMIICYPIAYPIGK+LDAV+GH
Sbjct:   121 AVLLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGH 180

Query:   181 HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLD 240
             +D LFRRAQLKALVSIHSQEAGKGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLD
Sbjct:   181 NDTLFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLD 240

Query:   241 VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP 300
             VN+KLDWE IGKIL+RGHSR+P+Y GNPKNIIGLLLVKSLLTVRAETE PVS+VSIR++P
Sbjct:   241 VNTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIP 300

Query:   301 RVPADMPLYDILNEFQKGSSHMAAXXXXXXXXXXXXX--ISLGEKFGGNGVFSGNSQLTT 358
             RVP+DMPLYDILNEFQKGSSHMAA               +S GE    N  F  +S LT 
Sbjct:   301 RVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTA 360

Query:   359 PLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDXX 418
             PLL ++              S  VVV ID+  +   N      Q G    +LP  LED  
Sbjct:   361 PLLKHE--------------SHDVVVDIDKVPKHVKNRGRNFQQNGTVTRDLPCLLEDNE 406

Query:   419 XXXXXXXXTLEDVFEELLQEEIVDETDVYVDVHKRIRVXXXXXXX-STMARA 469
                     TLEDVFEELLQ EIVDETDVY+DVHKR+RV        S++ RA
Sbjct:   407 DAEVIGIITLEDVFEELLQAEIVDETDVYIDVHKRVRVAAAAAAAVSSITRA 458

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 274/451 (60%), Positives = 319/451 (70%)

Query:     1 MLLLNVLTLAR--TTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXX 58
             M L+N +  AR  + + +++     + I FG+  W  YAG+SC LVLFA           
Sbjct:     1 MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query:    59 XXXXXXXXILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHP 118
                     ILQRSGT  EK+QAAAI PVVQKQHQLLVTLLLCNA AME LPIYLDK+F+ 
Sbjct:    61 SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query:   119 FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL 178
             +VA++LSVTFVLAFGE+IPQAIC+RYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct:   121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query:   179 GHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238
             GH+DALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query:   239 LDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRR 298
             LDVNSKLDWEA+GKILARGHSRVP+YSGNPKN+IGLLLVKSLLTVR ETET VSAV IRR
Sbjct:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query:   299 MPRVPADMPLYDILNEFQKGSSHMAAXXXXXXXXXXXXXISLGEKFGGNGVFSGNSQLTT 358
             +PRVPADMPLYDILNEFQKGSSHMAA               L E        S +S LT 
Sbjct:   301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDE----SNDSDLTA 356

Query:   359 PLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPN--TNNQSLPPQLGAAAENLPYSLED 416
             PLL           L  +   ++V+V ID+ +  +   NN+S P      +E +    + 
Sbjct:   357 PLL-----------LKREGNHDNVIVTIDKANGQSFFQNNESGPHGFSHTSEAIE---DG 402

Query:   417 XXXXXXXXXXTLEDVFEELLQEEIVDETDVY 447
                         E++ +E + +E  +  DV+
Sbjct:   403 EVIGIITLEDVFEELLQEEIVDETDEYVDVH 433

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 255/428 (59%), Positives = 298/428 (69%)

Query:    22 EADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAA 81
             +++ I FG+  W  YAG+SC LVLFA                   ILQRSGT  EK+Q+A
Sbjct:    23 QSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSA 82

Query:    82 AILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAIC 141
             AI PVVQKQHQLLVTLLL NA AME LPIYLDKIF+ +VA++LSVTFVL  GE+IPQAIC
Sbjct:    83 AIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAIC 142

Query:   142 SRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHSQEA 201
             +RYGLAVGAN VWLVRILM++ YPI++PI K+LD VLGH+D LFRRAQLKALVSIH + A
Sbjct:   143 TRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHNDPLFRRAQLKALVSIHGEAA 202

Query:   202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
             GKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFSLDVNSKLD EA+ KI ARGHSRV
Sbjct:   203 GKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRV 262

Query:   262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
             P+YS NPKN+IGLLLVKSLLTVR ET T VSAV IRR+PRVPA+MPLYDILNEFQKGSSH
Sbjct:   263 PVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRRIPRVPANMPLYDILNEFQKGSSH 322

Query:   322 MAAXXXXXXXXXXXXXISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES 381
             MAA                 E  G + V S NS+LT PLL           L  +   +S
Sbjct:   323 MAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTAPLL-----------LKREGNHDS 371

Query:   382 VVVGIDRTSRPNTNNQSLPPQLGAAA-ENLPYSLEDXXXXXXXXXXTL-EDVFEELLQEE 439
             V+V ID+      N QS   + G     +    +ED           + E++ +E + +E
Sbjct:   372 VIVRIDKA-----NGQSFISEAGRQGFSHTSEEIEDGDVIGIITLEDVFEELLQEEIVDE 426

Query:   440 IVDETDVY 447
               +  DV+
Sbjct:   427 TDEYIDVH 434

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 7.8e-92, Sum P(3) = 7.8e-92
 Identities = 165/292 (56%), Positives = 212/292 (72%)

Query:    33 WFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAAAILPVVQKQHQ 92
             +F++  V  +LVLFA                   +L +SGT  ++  AA ILPVV+ QH 
Sbjct:    12 FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query:    93 LLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANF 152
             LL TLL+CNA AMEALPI+LD +   + A+L+SVT +L FGEIIPQ++CSR+GLA+GA  
Sbjct:    72 LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query:   153 VWLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEAGKGGELTHDE 211
                VR+L+ IC P+A+PI K+LD +LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query:   212 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNI 271
             TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + +  IL +GHSRVP+Y     NI
Sbjct:   192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query:   272 IGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMA 323
             IGL+LVK+LLT+  + E  V  V+IRR+PRVP  +PLYDILNEFQKG SHMA
Sbjct:   252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMA 303

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
 Identities = 170/367 (46%), Positives = 237/367 (64%)

Query:    23 ADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAAA 82
             A+D+      ++VY  V   LV+FA                   ++ ++G   +++ A  
Sbjct:     3 ANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEK 62

Query:    83 ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142
             ILP+V+ QH LL TLL+ NA AMEALPI++D +   + A+L+SVT +LAFGEIIPQA+CS
Sbjct:    63 ILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCS 122

Query:   143 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLG-HHDALFRRAQLKALVSIHSQEA 201
             RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  H  L  RA+LK+LV +H  EA
Sbjct:   123 RYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEA 182

Query:   202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
             GKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + +G I + GHSR+
Sbjct:   183 GKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRI 242

Query:   262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
             PIYS NP  IIG +LVK+L+ VR E ET +  + IRRMP+V  ++PLYDILN FQ G SH
Sbjct:   243 PIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRSH 302

Query:   322 MAAXXXXXXXXXXXXXISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES 381
             MAA             +   +   G+     N  L+ P L +  TS  +P+   D  S+ 
Sbjct:   303 MAAVVGTKNHTNTNTPVH-EKSINGSPNKDANVFLSIPALNSSETSHQSPIRYIDSISDE 361

Query:   382 --VVVGI 386
                V+GI
Sbjct:   362 DEEVIGI 368

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
 Identities = 168/295 (56%), Positives = 212/295 (71%)

Query:    30 NPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAAAILPVVQK 89
             +P +F++  V   LVLFA                   +L +SGT   ++ AA ILPVV+ 
Sbjct:     9 SPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKN 68

Query:    90 QHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVG 149
             QH LLVTLL+CNA AME LPI+LD +   + A+L+SVT +L FGEIIPQ+ICSRYGLA+G
Sbjct:    69 QHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIG 128

Query:   150 ANFVWLVRILMIICYPIAYPIGKILDAVLGHHDA-LFRRAQLKALVSIHSQEAGKGGELT 208
             A     VR+L+ IC P+A+PI K+LD +LGH  A LFRRA+LK LV  H  EAGKGGELT
Sbjct:   129 ATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELT 188

Query:   209 HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP 268
             HDETTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + +  IL +GHSRVP+Y   P
Sbjct:   189 HDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQP 248

Query:   269 KNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMA 323
              NIIGL+LVK+LLT+  + E PV  V+IRR+PRVP  +PLYDILNEFQKG SHMA
Sbjct:   249 TNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMA 303

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 194/450 (43%), Positives = 266/450 (59%)

Query:    23 ADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAAA 82
             + DI      + +Y  +   LV FA                   +L +SG   ++  A  
Sbjct:     2 SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query:    83 ILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142
             I PVV+ QH LL TLL+ N+ AMEALPI+LDKI  P++A+LLSVT +L FGEI+PQA+C+
Sbjct:    62 IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query:   143 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEA 201
             RYGL VGA     VR+L+++ +PI+YPI K+LD +LG  H  L RRA+LK  V+ H  EA
Sbjct:   122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query:   202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
             GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct:   182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query:   262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
             P+Y  NP +IIGL+LVK+LL V A  E P+  +S+R++PRV   MPLYDILNEFQKG SH
Sbjct:   242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query:   322 MAAXXXXXXXXXXXXXISLG------EKFGGNGVFSGNSQLTTPLLTNDVTS-ETTPLLT 374
             +A               S         K   + +F  + +   P    +V+  E   + T
Sbjct:   302 IAVVYKDLDEQEQSPETSENGIERRKNKKTKDELFKDSCR--KPKAQFEVSEKEVFKIET 359

Query:   375 NDVTSESVVVGIDRTSRPNTNNQSLPPQL---GAA-----AENLPYSLEDXXXXXXXXXX 426
              D  S     G ++     T+  + P +    G +      EN P   +           
Sbjct:   360 GDAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIP-DFPTNEEVVGVI 418

Query:   427 TLEDVFEELLQEEIVDETDVYVDVHKRIRV 456
             T+EDV EELLQEEI+DETD YV++H RIRV
Sbjct:   419 TMEDVIEELLQEEILDETDEYVNIHNRIRV 448

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 535 (193.4 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 122/325 (37%), Positives = 187/325 (57%)

Query:     3 LLNVLTLARTTMPRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXX 62
             L++    ++   PR+D   E   +   +   ++Y GV+  LVL                 
Sbjct:    31 LVSAAPTSQFLAPRHDAHAETHALPANDATLWLYLGVAAALVLTGGAFAGLTIALMGQDE 90

Query:    63 XXXXILQRSGTS-TEKQQAAAILPVVQK-QHQLLVTLLLCNACAMEALPIYLDK-IFHPF 119
                 ++Q SG S +E++ AA++L ++++ +H +LVTLLL N    E LPI LD+ +   +
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:   120 VAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLG 179
              AVL S   ++ FGEI+PQ+IC RYGL +GA     V  LM +  P+A+P+ K+LD +LG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   180 H-HDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238
               H  ++++A LK LV++H      G +L  DE TIIS  LDL EK+    MTP+E  F+
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   239 LDVNSKLDWEAIGKILARGHSRVPIYSG-NPKNIIGLLLVKSLLTVRAETETPVSAVSIR 297
             +  ++ LD   +  IL++G+SR+PI+S  NP+N IG+LLVK L+T   E   PVS  ++ 
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSHFALA 330

Query:   298 RMPRVPADMPLYDILNEFQKGSSHM 322
              +P    +    DI+N FQ+G SHM
Sbjct:   331 TLPETRPETSCLDIVNFFQEGKSHM 355

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC4B3.03c SPCC4B3.03c "mitochondrial morphology protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 492 (178.3 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 113/312 (36%), Positives = 178/312 (57%)

Query:    15 PRNDVVFEADDIEFGNPWWFVYAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTS 74
             P  D  F + + +    +W     +S VL+L                     +L++SG +
Sbjct:    45 PSQDGGFVSAEKDSDFEYWMKLI-ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDA 103

Query:    75 TEKQQAAAILPVVQK-QHQLLVTLLLCNACAMEALPIYLDKIFHP-FVAVLLSVTFVLAF 132
             +E+  A  +L ++++ +H +LVTLLL N    E LPI  D I    + AVL+S   ++ F
Sbjct:   104 SERVHARKVLKLLRRGKHWVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIF 163

Query:   133 GEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHHDA-LFRRAQLK 191
             GE+IPQA C RYGL++GA    +V  +M + +PIAYP   ILDA LG   + +++++ LK
Sbjct:   164 GEVIPQATCVRYGLSIGAKLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLK 223

Query:   192 ALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIG 251
              LV++H ++ G   +L  DE TII+  LDL EK AE  MTPIE  F+L ++  LD + IG
Sbjct:   224 TLVTLH-RDLGID-KLNQDEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIG 281

Query:   252 KILARGHSRVPIYS-GNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYD 310
             +I+  G+SR+P++  G P + IG+LL K+L+    + + PV   ++  +P+   +    D
Sbjct:   282 EIICAGYSRIPVHKPGFPHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLD 341

Query:   311 ILNEFQKGSSHM 322
             +LN  Q+G SHM
Sbjct:   342 LLNYCQEGKSHM 353

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 497 (180.0 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 111/291 (38%), Positives = 167/291 (57%)

Query:    36 YAGVSCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTSTEKQQAAAILPVVQK-QHQLL 94
             Y  +S +LVL                     ++  SG+++EK+ A  +L ++ + +H +L
Sbjct:    64 YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query:    95 VTLLLCNACAMEALPIYLDKIFHP-FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFV 153
             VTLLL N    E LPI LD+     + AV+ S   ++ FGEIIPQ++C +YGL VGA F 
Sbjct:   124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query:   154 WLVRILMIICYPIAYPIGKILDAVLGH-HDALFRRAQLKALVSIHSQEAGKGGELTHDET 212
               V +LM + YP+AYPI  +LD +LG  H  +++++ LK LV++H     +   LT DE 
Sbjct:   184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query:   213 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNI 271
             TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+PI+  N P N 
Sbjct:   242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query:   272 IGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHM 322
             IG+LLV+ L++   +   P+S   +  +P    +    +ILN FQ+G +HM
Sbjct:   302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHM 352

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVS8	Y1327_ARATH	No assigned EC number	0.7263	0.9148	0.9478	yes	no
Q4V3C7	Y4423_ARATH	No assigned EC number	0.7047	0.8607	0.8989	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023690001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (504 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	4e-41
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	9e-30
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	1e-22
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	2e-20
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	2e-18
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	8e-11
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	4e-08
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	3e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.002
COG0232	412	COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide	0.003

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  152 bits (386), Expect = 4e-41
 Identities = 82/306 (26%), Positives = 136/306 (44%), Gaps = 30/306 (9%)

Query: 42  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCN 101
           +L+  +   S     L+SL    LE L   G      +A A L ++++ ++ L T+ L  
Sbjct: 12  LLIALSAFFSAAEFALVSLRRSRLEQLAEEGNK----RAKAALKLIERLNRYLSTVQLGI 67

Query: 102 ------------ACAMEALPIYLDKIFHPFVAVLLSVTF-VLAFGEIIPQAICSRYGLAV 148
                             L   L+ +          +TF  + FGE++P++I  R    V
Sbjct: 68  TLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKV 127

Query: 149 GANFVWLVRILMIICYPIAYPIGKILDAVLGHHDALFRRAQLKALVSIHS-------QEA 201
                  +R    + YP+ + + +I +A+L     LF    ++      +        E+
Sbjct: 128 ALLIAPPLRFFYRLLYPLIWLLNRIANAILR----LFGVEPVEEEALTSTEEELELVSES 183

Query: 202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV 261
            + G L  +E  +I+  LDL ++T  E MTP     +LD+   ++ E I  IL  GHSR+
Sbjct: 184 AEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRI 242

Query: 262 PIYSGNPKNIIGLLLVKSLLT-VRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSS 320
           P+Y G+  NIIG++ VK LL  +          V +R    VP  + L D+L EF++  +
Sbjct: 243 PVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERT 302

Query: 321 HMAAVV 326
           HMA VV
Sbjct: 303 HMAIVV 308

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  114 bits (288), Expect = 9e-30
 Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 36  YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLV 95
              +  +L+L +   S     L+SL    LE L   G     + A  +L ++    +LL 
Sbjct: 2   LLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEG----NKGARRLLKLLANPDRLLA 57

Query: 96  TLLLCNACAMEALPIYLDKIF--------HPFVAVLLSVTFVLAFGEIIPQAICSRYGLA 147
           TLLL N  A   L                   +A L+S   +L FGEI+P+ +  R    
Sbjct: 58  TLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPER 117

Query: 148 VGANFVWLVRILMIICYPIAYPIGKILDAVLG-----HHDALFRRAQLKALVSIHSQEAG 202
           +       +R+LM + YP+ + + K+ + +L               +L+ALV    +E  
Sbjct: 118 IALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE-- 175

Query: 203 KGGELTHDE 211
             G +  +E
Sbjct: 176 --GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 77/300 (25%), Positives = 134/300 (44%), Gaps = 26/300 (8%)

Query: 42  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCN 101
           +L+L + ++SG  +   SL   +L   +   +  E+     ++ ++ +  +LL T+L+ N
Sbjct: 3   LLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILIAN 58

Query: 102 A---CAMEALPIYL-DKIFH----PFVAVLLS---VTF-VLAFGEIIPQAICSRYGLAVG 149
                A+  L   L D +F       +  L+    VTF +L FGEI+P+   +R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 150 ANFVWLVRILMIICYPIAYP---IGKILDAVLGHHDALFRRAQLKALVSIHSQEAGKGGE 206
               + + IL  +  PI+ P   I   +    G   +     QL   + +  +E      
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEED----- 173

Query: 207 LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSG 266
            T +E  I+ G +       ++ M P    F+LD+ +    E I KI+  G+SR+P+Y  
Sbjct: 174 TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKE 232

Query: 267 NPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVV 326
              NI G+L +K LL      +       +R    VP +  L D+L +FQ+  +H+A VV
Sbjct: 233 TIDNITGVLYIKDLLP-HLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVV 291

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 32/316 (10%)

Query: 31  PWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQ 90
           P W +   +  ++++ A   SG    L +L    L  L + G     + A  +  +++K 
Sbjct: 1   PTWILIIAIIILIIISA-FFSGSETALTALNRYRLRHLAKQG----NRGAKRVEKLLEKP 55

Query: 91  HQLLVTLLLCNACAMEALPIYLDKIFHPF-----VAVLLSV-TFV-LAFGEIIPQAICSR 143
            +L+ T+L+ N             +         VA+   V TFV L F E++P+ I + 
Sbjct: 56  DRLIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAAL 115

Query: 144 YGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL--------GHHDALFRRAQLKALVS 195
           Y   V     +++ IL+ +  P+ + +  I   +L             L  + +L+  V+
Sbjct: 116 YPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175

Query: 196 IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAI-GKIL 254
               E    G +   +  ++ G LDL   T  + M P      +D++    WE I  ++L
Sbjct: 176 ESGSE----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDID--DPWEEIVRQLL 229

Query: 255 ARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR----VPADMPLYD 310
              H+R+P+Y  +  NIIG+L V+ LL +  E     +   I R       VP   PL D
Sbjct: 230 HSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-TKEDILRAADEPYFVPEGTPLSD 288

Query: 311 ILNEFQKGSSHMAAVV 326
            L  FQ+   H+A VV
Sbjct: 289 QLVAFQRNKKHIALVV 304

Length = 423

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSI 296
            +LD +  L+ E +  I   GHSR P+Y G+  NIIG++ VK LL   AE E  +    +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 297 RR-MPRVPADMPLYDILNEFQKGSSHMAAVV 326
            R    VP   PL D+L E +K  SHMA VV
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 4/130 (3%)

Query: 199 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH 258
           +++ +   +  D   ++ G +D+ +    + M P     +L  N  LD E +  I+   H
Sbjct: 42  RDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100

Query: 259 SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR--VPADMPLYDILNEFQ 316
           SR P+ S +  ++ G+LL K LL        P     + R P   VP    +  +L EF+
Sbjct: 101 SRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLR-PAVVVPESKRVDRLLKEFR 159

Query: 317 KGSSHMAAVV 326
              +HMA V+
Sbjct: 160 SQRNHMAIVI 169

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 210 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK 269
           D   ++ G +D+ ++   + M P     +L  N  LD E +  I+   HSR P+ S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 270 NIIGLLLVKSLLTVRAETETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVV 326
           +I G+L+ K LL          S   + R+   VP    +  +L EF+    HMA V+
Sbjct: 112 HIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVI 169

Length = 292

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 25/216 (11%)

Query: 126 VTFV-LAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKI---------LD 175
           +TFV L F E++P+ I + Y   V     +L+  L I+  P+ + +  I         + 
Sbjct: 86  LTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIK 145

Query: 176 AVLGHHDALFRRAQLKALVS-IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIE 234
             +    AL  + +L+ +V    SQ +        ++  ++S  LDL + T ++ M P  
Sbjct: 146 TDIVVSGAL-SKEELRTIVHESRSQIS------RRNQDMLLS-VLDLEKVTVDDIMVPRN 197

Query: 235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKS---LLTVRAETETP 290
               +D+N   DW++I + L    H R+ +Y  +  + I +L V+    L+T + E    
Sbjct: 198 EIVGIDIND--DWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKE 255

Query: 291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVV 326
               +   +  VP   PL   L +FQ+    +  VV
Sbjct: 256 NMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 291

Length = 413

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 418 EEGVVIGIITLEDVFEELLQEEIVDETD 445
           E G V G++TLED+ EE++  EI DE D
Sbjct: 310 EYGGVEGLVTLEDIIEEIVG-EIPDEHD 336

Length = 429

>gnl|CDD|223310 COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and metabolism]

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 20/72 (27%), Positives = 34/72 (47%)

Query: 402 QLGAAAENLPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAA 461
           Q+   A+++ YS+ D+E+G+  G+ITLED+ E  L           V   + +  A   A
Sbjct: 208 QIMDLADDIAYSVHDLEDGLRKGLITLEDLIELPLLALEDAIVKGRVLFPELVSAALEVA 267

Query: 462 AASTMARAPSSW 473
           A   + R+    
Sbjct: 268 ANELIRRSIQQL 279

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.96
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.95
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.92
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.7
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.69
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.62
COG2524	294	Predicted transcriptional regulator, contains C-te	99.6
COG4109	432	Predicted transcriptional regulator containing CBS	99.56
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.45
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.44
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.43
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.43
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.43
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.42
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.42
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.41
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.41
COG3620	187	Predicted transcriptional regulator with C-termina	99.4
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.39
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.39
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.38
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.38
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.38
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.38
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.37
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.36
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.36
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.36
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.35
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.35
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.35
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.34
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.34
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.34
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.34
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.33
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.33
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.33
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.32
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.32
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.32
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.32
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.32
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.32
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.31
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.31
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.3
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.3
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.3
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.29
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.29
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.29
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.29
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.28
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.28
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.28
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.28
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.28
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.27
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.27
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.27
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.27
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.26
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.26
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.26
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.26
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.25
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.25
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.25
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.25
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.25
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.24
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.24
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.23
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.22
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.21
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.21
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.2
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.19
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.16
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.15
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.15
COG0517	117	FOG: CBS domain [General function prediction only]	99.13
COG2905	610	Predicted signal-transduction protein containing c	99.01
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.94
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.84
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.62
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.51
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.41
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.35
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.28
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.19
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.07
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.89
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.7
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.62
COG2524	294	Predicted transcriptional regulator, contains C-te	97.57
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.56
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.53
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.53
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.52
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.51
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.5
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.44
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.35
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.34
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.28
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.28
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.25
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.25
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.25
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.25
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.24
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.24
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.21
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.2
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.19
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.17
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.17
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.16
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.16
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.16
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.15
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.13
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.12
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.12
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.08
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.08
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.08
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.08
COG0517	117	FOG: CBS domain [General function prediction only]	97.07
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.07
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.05
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.04
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.04
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.04
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.04
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.04
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.03
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.03
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.03
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.02
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.02
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.0
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.99
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.99
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.98
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.98
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.96
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.95
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.95
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.94
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.93
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.92
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.89
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.89
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.89
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.88
COG3620	187	Predicted transcriptional regulator with C-termina	96.84
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.84
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.84
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.81
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.81
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.76
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.73
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.73
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.72
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.7
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	96.67
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.65
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.61
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.6
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.58
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.57
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.48
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.47
COG2905	610	Predicted signal-transduction protein containing c	96.46
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.4
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.37
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	96.3
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.3
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.08
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.03
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	95.99
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.94
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	95.86
PRK11573	413	hypothetical protein; Provisional	95.42
COG1253	429	TlyC Hemolysins and related proteins containing CB	94.77
COG4109	432	Predicted transcriptional regulator containing CBS	94.53
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	94.5
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	92.6
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	91.18
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.46
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	89.19

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=2.4e-57  Score=481.60  Aligned_cols=285  Identities=25%  Similarity=0.466  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010123           41 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYL----DKIF  116 (517)
Q Consensus        41 ~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l----~~l~  116 (517)
                      ++|+++||||||+|+|++|+++.+++.++++|+    ++|+++++++++|+++++|+++||+++|.+.+.+.    ..+|
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~----~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNS----KKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457789999999999999999999999999987    36788999999999999999999999988766543    3334


Q ss_pred             HH----H----HHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHH---hCCCCccc
Q 010123          117 HP----F----VAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAV---LGHHDALF  185 (517)
Q Consensus       117 ~~----~----ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~l---lG~~~~~~  185 (517)
                      +.    +    ++++++|+++++|||++||++|.+||++++.+++|++++++++++|++|+++++.+++   +|.+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~  157 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI  157 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            31    1    3445677889999999999999999999999999999999999999999999987764   56655568


Q ss_pred             cHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEe
Q 010123          186 RRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYS  265 (517)
Q Consensus       186 s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~d  265 (517)
                      |++||+.+++.+    +++| ++++|+++++++++|++++|+|+||||.++++++.+++++ ++++.+.+++|||+|||+
T Consensus       158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~  231 (408)
T TIGR03520       158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK  231 (408)
T ss_pred             CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence            999999999843    3445 6899999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          266 GNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       266 dd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      ++.|+++|+|+.||++....++..+++++ ++++.+||+++++.++++.|++++.|+++|+||||++.|++
T Consensus       232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiV  301 (408)
T TIGR03520       232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLV  301 (408)
T ss_pred             CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEE
Confidence            87889999999999986544334457787 57889999999999999999999999999999887776665

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-56  Score=472.80  Aligned_cols=332  Identities=19%  Similarity=0.324  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH-
Q 010123           44 VLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYL----DKIFHP-  118 (517)
Q Consensus        44 illsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l----~~l~~~-  118 (517)
                      +++||||||+|+|++|+++.+|+.++++|++    +|++++++++||+++|+|+++||++++.+.+.+.    ..+++. 
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4689999999999999999999999999974    6788999999999999999999999987665433    233332 


Q ss_pred             --HHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH---HhCCCC-----ccccHH
Q 010123          119 --FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDA---VLGHHD-----ALFRRA  188 (517)
Q Consensus       119 --~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~---llG~~~-----~~~s~e  188 (517)
                        +++++++|+++++|||++||++|.+||++++.++++++++++++++|++|+++++.+.   ++|.+.     ..+|++
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence              3556678899999999999999999999999999999999999999999999887765   456542     368999


Q ss_pred             HHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC
Q 010123          189 QLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP  268 (517)
Q Consensus       189 EL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~  268 (517)
                      ||+.+++.+    .  +.++++|+++++++++|++++|+|+||||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999842    2  259999999999999999999999999999999999999999 999999999999999999888


Q ss_pred             CCEEEEEEhhhHhcccccC-C---cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccccccccccc
Q 010123          269 KNIIGLLLVKSLLTVRAET-E---TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKF  344 (517)
Q Consensus       269 d~iVGiV~~kDLl~~~~~~-~---~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~~~~~~  344 (517)
                      |+++|+||.||++....++ +   ..+.++ +|++.+||+++++.++|+.|++++.|+|+|+||||++.|++        
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiV--------  301 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLV--------  301 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEe--------
Confidence            9999999999998643221 1   123344 68999999999999999999999999999999999999988        


Q ss_pred             CCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcccccccCCCCCCcccCCCC--EE
Q 010123          345 GGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEG--VV  422 (517)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~--~v  422 (517)
                                                   |.+|..|+++|+|.++++...  ...          +..    ..+|  .+
T Consensus       302 -----------------------------TleDilEeivGei~de~d~~~--~~~----------i~~----~~~~~~~v  336 (413)
T PRK11573        302 -----------------------------TVEDILEEIVGDFTTSMSPTL--AEE----------VTP----QNDGSVII  336 (413)
T ss_pred             -----------------------------eHHHHHHHHhCCCCcccCccc--ccc----------eEE----ecCCEEEE
Confidence                                         889999999999988764210  000          001    1234  46


Q ss_pred             EEEEehHHHHHHHhcCccc
Q 010123          423 IGIITLEDVFEELLQEEIV  441 (517)
Q Consensus       423 iGIITleDV~eeLl~eei~  441 (517)
                      -|-.+++|+-+.| +-++.
T Consensus       337 ~G~~~l~d~~~~l-~~~l~  354 (413)
T PRK11573        337 DGTANVREINKAF-NWHLP  354 (413)
T ss_pred             EeeeEHHHHHHHh-CCCCC
Confidence            7999999998887 44553

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-56  Score=451.77  Aligned_cols=286  Identities=24%  Similarity=0.405  Sum_probs=253.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----
Q 010123           36 YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIY----  111 (517)
Q Consensus        36 ~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~----  111 (517)
                      .++++++|+++||||||+|+|+++++|.|+++++++|+    |+|+++.+++++|+++++|+|+||+++|.+.+.+    
T Consensus         5 l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~----~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~   80 (423)
T COG4536           5 LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATIL   80 (423)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccc----hhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHH
Confidence            34667778999999999999999999999999999999    4689999999999999999999999999876544    


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH---HhCCCC---
Q 010123          112 LDKIFHP---FVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDA---VLGHHD---  182 (517)
Q Consensus       112 l~~l~~~---~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~---llG~~~---  182 (517)
                      +-.+||.   .+|+.++|+++++|+|++||++|..||++++..+++++.++.++|+|++|+++++.+.   +||.+.   
T Consensus        81 ~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~~~~  160 (423)
T COG4536          81 GIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQA  160 (423)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccc
Confidence            3345554   3677788999999999999999999999999999999999999999999999988775   467652   


Q ss_pred             --ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcE
Q 010123          183 --ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR  260 (517)
Q Consensus       183 --~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr  260 (517)
                        ...++||||.+++    +++..|...+++++|+.++++|+++||.|||+||.++..++.|++.+ ++++.+..+.|+|
T Consensus       161 ~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~HtR  235 (423)
T COG4536         161 VSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSPHTR  235 (423)
T ss_pred             cccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCCCCc
Confidence              4689999999998    44556777788999999999999999999999999999999999999 9999999999999


Q ss_pred             EEEEeCCCCCEEEEEEhhhHhcccccCC-ccccccc--ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123          261 VPIYSGNPKNIIGLLLVKSLLTVRAETE-TPVSAVS--IRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG  330 (517)
Q Consensus       261 ~PV~ddd~d~iVGiV~~kDLl~~~~~~~-~~V~dim--~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG  330 (517)
                      +|||.++.|+++|++|.||+++...+.+ ..-.+++  .+++.|||+.+++.+.|..|++++.|++.||||||
T Consensus       236 iplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG  308 (423)
T COG4536         236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG  308 (423)
T ss_pred             eeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC
Confidence            9999999999999999999998876654 2222332  47899999999999999999999999999999764

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=3.3e-52  Score=445.12  Aligned_cols=309  Identities=28%  Similarity=0.431  Sum_probs=267.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 010123           36 YAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDK-  114 (517)
Q Consensus        36 ~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l~~-  114 (517)
                      .++++++|+++|||||++|+|++|+++.|+++++++|+    ++|..++++.++++.+++++++|+++++.+.+.+... 
T Consensus         6 ~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~   81 (429)
T COG1253           6 TLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPA   81 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677889999999999999999999999999999987    4688899999999999999999999887765543322 


Q ss_pred             ---HHHHHH-----H----HHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh---C
Q 010123          115 ---IFHPFV-----A----VLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL---G  179 (517)
Q Consensus       115 ---l~~~~i-----a----~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~ll---G  179 (517)
                         ++.++.     +    ++++|+++++|||++||++|.+||++++++.++++++++++++|++|++++++++++   |
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~  161 (429)
T COG1253          82 LAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFG  161 (429)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               222221     1    457788999999999999999999999999999999999999999999999888754   4


Q ss_pred             CC---C--ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHH
Q 010123          180 HH---D--ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKIL  254 (517)
Q Consensus       180 ~~---~--~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~  254 (517)
                      .+   +  ...+.++++ +++    ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~  235 (429)
T COG1253         162 VEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELIL  235 (429)
T ss_pred             CCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHH
Confidence            43   2  346677777 776    56678999999999999999999999999999999999999999998 9999999


Q ss_pred             HcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc-ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCc
Q 010123          255 ARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET-PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK  333 (517)
Q Consensus       255 ~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~-~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~  333 (517)
                      +++|||+|||+++.|+++|++|.||++....+++. .....-.+++++||+++++.++|++|++.+.|||+|+||||++.
T Consensus       236 ~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~  315 (429)
T COG1253         236 ESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVE  315 (429)
T ss_pred             hCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeE
Confidence            99999999999888999999999999987665432 22222356999999999999999999999999999999999988


Q ss_pred             cccccccccccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCC
Q 010123          334 KSQSISLGEKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSR  391 (517)
Q Consensus       334 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (517)
                      |++                                     |.+|..|+++|+|.++++
T Consensus       316 GlV-------------------------------------TleDIiEeIvGei~de~d  336 (429)
T COG1253         316 GLV-------------------------------------TLEDIIEEIVGEIPDEHD  336 (429)
T ss_pred             EEe-------------------------------------EHHHHHHHHhCCCcCccc
Confidence            887                                     778888888888887775

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=357.88  Aligned_cols=420  Identities=44%  Similarity=0.599  Sum_probs=339.7

Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010123           24 DDIEFGNPWWFVYAGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQ-QAAAILPVVQKQHQLLVTLLLCNA  102 (517)
Q Consensus        24 ~~~~~~~~~~~~~~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk-~A~~il~l~~~~~~lL~TlLlgn~  102 (517)
                      ...|+...+|+++..++++|++++++|||.++++++++...++.+.+.|+..+++ .++++....++.+++|+|+++||.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            4567777788888888888999999999999999999999999999999988776 788899999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHhCCC
Q 010123          103 CAMEA-LPIYLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVLGHH  181 (517)
Q Consensus       103 la~~~-l~~~l~~l~~~~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~llG~~  181 (517)
                      +++.+ ++.++....++|.++.+++++++.||||+||++|.+|+..+++.+.|++++++++++||.||++++ ++.+|.+
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99999 898888888889999999999999999999999999999999999999999999999999999999 8888887


Q ss_pred             C-ccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcE
Q 010123          182 D-ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR  260 (517)
Q Consensus       182 ~-~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr  260 (517)
                      . ..+.+.+++.++..|+.|+++ |.+..+|..++.+++++.++.++++|||..+++.++.+..+.++.+..+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            6 567889999999999988877 99999999999999999999999999999999999999999988899999999999


Q ss_pred             EEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          261 VPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       261 ~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      +|||+.+..+.+|.+..+.++...    .....++.+.+.++++.+|+++++.+.++.|++.+.|++.|.. +....+++
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~  319 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVL  319 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeE
Confidence            999998777888887777777665    4446788888899999999999999999999999999999987 44445544


Q ss_pred             ccccc-----cccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccc-cccccccCCCC----CCCCCCCCcccccc
Q 010123          337 SISLG-----EKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSES-VVVGIDRTSRP----NTNNQSLPPQLGAA  406 (517)
Q Consensus       337 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~  406 (517)
                      .-.+-     +...+.... +.++++.++...+.           ..... .+.+|++.+-.    +....+..+.++..
T Consensus       320 ~l~~~~~~~~ev~de~d~~-~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (498)
T KOG2118|consen  320 TLEDLEEVVKEVEDEEDKE-EIKFETGIFTLRGI-----------GDLDAGAVTDIDQLGERSPIKERSPRSSESLLDSR  387 (498)
T ss_pred             eccchhhhcceeccccccc-cchhcccchhhccc-----------ccccccccchhhhhcccccccccCCCCCccccccc
Confidence            32221     222222222 44555555444431           11111 34444444211    11122222222222


Q ss_pred             cCCCCCCcccCCC-CEEEEEEehHHHHHHHhcCccccccchhhhhhhhHhHHHHHH
Q 010123          407 AENLPYSLEDIEE-GVVIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAA  461 (517)
Q Consensus       407 ~~~~~~~~~~~ed-~~viGIITleDV~eeLl~eei~detd~~~d~~~~~~v~~~~~  461 (517)
                      ...   .++-.+. ....|++|++|+++++++++|.++++.+...+++.|++..++
T Consensus       388 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~  440 (498)
T KOG2118|consen  388 KSA---FEDLAELGEIGHSVLTLESVIEPDESERILSDLQLVKITRQQYRNALLAS  440 (498)
T ss_pred             ccc---ccccccccccCccceehhhhhccccchhhhccccceechhhhhhhHhhhh
Confidence            111   1111122 335788999999999999999999999999999999997764

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.96  E-value=4.6e-28  Score=247.04  Aligned_cols=155  Identities=25%  Similarity=0.417  Sum_probs=133.2

Q ss_pred             HHHHhCCCCccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHH
Q 010123          174 LDAVLGHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKI  253 (517)
Q Consensus       174 l~~llG~~~~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l  253 (517)
                      +..++|.+.  .|++||+.+++    ++.+.|.|+++|+++++++|+|.+++|+++|+||.++++++.++++. ++++.+
T Consensus        23 ~~~~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i   95 (292)
T PRK15094         23 LSQLFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI   95 (292)
T ss_pred             HHHHcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence            344566553  58999999998    45567999999999999999999999999999999999999999999 999999


Q ss_pred             HHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCC
Q 010123          254 LARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGK  331 (517)
Q Consensus       254 ~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~  331 (517)
                      .+++|+|+|||+++.++++|+|+.||++.....  ....+.++| +++++|++++++.++++.|++++.|++||+||||+
T Consensus        96 ~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~  174 (292)
T PRK15094         96 IESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG  174 (292)
T ss_pred             HhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence            999999999998766899999999999864332  123477875 77789999999999999999999999999997665


Q ss_pred             Ccccc
Q 010123          332 SKKSQ  336 (517)
Q Consensus       332 ~~G~~  336 (517)
                      +.|++
T Consensus       175 viGiV  179 (292)
T PRK15094        175 VSGLV  179 (292)
T ss_pred             EEEEe
Confidence            55544

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.95  E-value=4.5e-26  Score=215.46  Aligned_cols=167  Identities=28%  Similarity=0.480  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 010123           37 AGVSCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTSTEKQQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLD---  113 (517)
Q Consensus        37 ~~ii~~LillsafFSg~E~Al~Sl~~~rL~~la~~g~~~~kk~A~~il~l~~~~~~lL~TlLlgn~la~~~l~~~l~---  113 (517)
                      +++++++++++|||||+|+|++++++.+++.++++|+    ++++++.++++||++++.|++++|++++.+.+.+..   
T Consensus         3 l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~   78 (183)
T PF01595_consen    3 LLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLA   78 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667778899999999999999999999999999987    467889999999999999999999998877664433   


Q ss_pred             -HHHH----HHHHHHHHHHHHHHHhhhchhhHHHHhhhHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHh---CCC---C
Q 010123          114 -KIFH----PFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFVWLVRILMIICYPIAYPIGKILDAVL---GHH---D  182 (517)
Q Consensus       114 -~l~~----~~ia~vl~t~lilvFGEiiPK~la~~~~~~ia~~~a~~v~~l~~l~~Plv~~i~~ll~~ll---G~~---~  182 (517)
                       .+++    .+++++++++++++|||++||++|.+||++++.+.++++++++++++|++|++.++.++++   |.+   .
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~  158 (183)
T PF01595_consen   79 SNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEED  158 (183)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence             2333    2455667788899999999999999999999999999999999999999999999888654   443   2


Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCCChhH
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGELTHDE  211 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L~~eE  211 (517)
                      +.+++|||+++++    +++++|.++++|
T Consensus       159 ~~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  159 PAVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            5789999999999    556789999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.92  E-value=3.2e-25  Score=213.59  Aligned_cols=213  Identities=22%  Similarity=0.318  Sum_probs=176.1

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI  263 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV  263 (517)
                      +-+++||..++.    .+++.+.|+.+-..|+.+++++.+.+|+|||.||++++++..+.+++ +++..+.++.||||||
T Consensus        31 pknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l~~iiesaHSRfPV  105 (293)
T COG4535          31 PKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPV  105 (293)
T ss_pred             CcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHHHHHHHhccccCCc
Confidence            457899999997    45678899999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccccccccc
Q 010123          264 YSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLG  341 (517)
Q Consensus       264 ~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~~~  341 (517)
                      +.++.|++.|+++.|||+.....+  ...++++ .||..+||++..+..+|+.|+.++.|||+|||||||++|+|     
T Consensus       106 i~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLV-----  179 (293)
T COG4535         106 ISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLV-----  179 (293)
T ss_pred             ccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeE-----
Confidence            999889999999999999865443  3567775 89999999999999999999999999999999999999998     


Q ss_pred             cccCCCCcccCCCCCccccccCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcccccccCCCCCCcccCCCCE
Q 010123          342 EKFGGNGVFSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAENLPYSLEDIEEGV  421 (517)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ed~~  421 (517)
                                                      |.++..|..|||||++++..-            ..++-.++  .....
T Consensus       180 --------------------------------TIEDiLEqIVGdIEDE~Deee------------~~dI~~ls--~~~~~  213 (293)
T COG4535         180 --------------------------------TIEDILEQIVGDIEDEYDEEE------------DADIRQLS--RHTWR  213 (293)
T ss_pred             --------------------------------EHHHHHHHHhcccccccchhh------------hhhhHhhc--CCceE
Confidence                                            779999999999999987410            00111111  03556


Q ss_pred             EEEEEehHHHHHHHhcCccccccchhhhhhhhHhHH
Q 010123          422 VIGIITLEDVFEELLQEEIVDETDVYVDVHKRIRVA  457 (517)
Q Consensus       422 viGIITleDV~eeLl~eei~detd~~~d~~~~~~v~  457 (517)
                      |-+.-..||.=|. .+.+.-   |+.+|....+-..
T Consensus       214 VrALT~IedFNe~-F~t~Fs---DeevDTIGGLVm~  245 (293)
T COG4535         214 VRALTEIEDFNEA-FGTHFS---DEEVDTIGGLVMQ  245 (293)
T ss_pred             EEecccHHHHHHH-hcCCCC---hhhhhhhhHHHHH
Confidence            7777777776544 454554   5566665555433

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.70  E-value=7.5e-16  Score=153.26  Aligned_cols=136  Identities=15%  Similarity=0.289  Sum_probs=117.1

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhc-------ccccccccccccccceEEecCCCChhHHHHHHHHHc
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALD-------LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILAR  256 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~-------L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~  256 (517)
                      .|+.+||.+.++    +-+|.-+|+.+|-+.+.+-.+       +.+.++.|||++  +|++++.+++++ ++.+.+.++
T Consensus       202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            488999999887    445567788887666554444       478899999995  999999999999 999999999


Q ss_pred             CCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          257 GHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       257 g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++..+||.|++ .+++|+|+.+|++.....         ...+++.+|..++.+|.++++..+++..|...+.|.+||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999875 899999999999873211         25679999999999999999999999999999999999999

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.69  E-value=2.5e-16  Score=169.87  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             cccHHHHHHHHHhhhhhcccC------CCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHH--
Q 010123          184 LFRRAQLKALVSIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILA--  255 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~------G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~--  255 (517)
                      .++.+|+..+++.    ..+.      +.++++|++.++++++|++.+|+++|++  ++++++.++++. ++++.+++  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            5788999999973    3333      4799999999999999999999999994  899999999999 99999975  


Q ss_pred             -cCC--cEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          256 -RGH--SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       256 -~g~--Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       ..+  ..+||++++ ++++|+|+.+|++...  .+.+++++|.++++++++++++.++++.|++++.+.+||||
T Consensus       162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD  233 (449)
T TIGR00400       162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD  233 (449)
T ss_pred             CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence             233  445555544 8899999999998653  35689999888888999999999999999999999999999

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.62  E-value=5.7e-15  Score=159.39  Aligned_cols=141  Identities=13%  Similarity=0.259  Sum_probs=118.8

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCCCh-----hHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG  257 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L~~-----eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g  257 (517)
                      ..+|++|+..++..    .+..|.|.+     +|++++++++++.+     +|.+  ++++++++.++. ++++.|.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~-----~~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAEN-----GIIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccC-----ceec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            46899999999874    334688885     89999999997765     4653  778999999999 9999999999


Q ss_pred             CcEEEEEeCCC--CCEEEEEEhhhHhcccccCCcccccccc-cCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcc
Q 010123          258 HSRVPIYSGNP--KNIIGLLLVKSLLTVRAETETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKK  334 (517)
Q Consensus       258 ~Sr~PV~ddd~--d~iVGiV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G  334 (517)
                      ++++||++++.  ++++|+|+.+|++... ..+.+++++|. .+++++++++++.++++.|++++.+++||+|++|.+.|
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG  189 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG  189 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99999998753  6899999999998643 23568999987 48999999999999999999999999999996665555


Q ss_pred             cc
Q 010123          335 SQ  336 (517)
Q Consensus       335 ~~  336 (517)
                      ++
T Consensus       190 iV  191 (450)
T TIGR01302       190 LI  191 (450)
T ss_pred             EE
Confidence            55

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.60  E-value=2.8e-15  Score=146.94  Aligned_cols=108  Identities=17%  Similarity=0.299  Sum_probs=99.6

Q ss_pred             HHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--Ccccc
Q 010123          215 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVS  292 (517)
Q Consensus       215 I~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~  292 (517)
                      +.++..+.+.+|+++|++  +++++.+|+|+. |+.+.+.++++...||+++  |+++|+++..|+..+..++  +..|+
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            456667789999999995  899999999999 9999999999999999986  5999999999999877664  57899


Q ss_pred             cccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          293 AVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       293 dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++|.++++++.+|+.++||++.|.+++..+++|+|
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d  272 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD  272 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence            99999999999999999999999999999999999

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.56  E-value=1.4e-14  Score=147.13  Aligned_cols=112  Identities=23%  Similarity=0.346  Sum_probs=100.3

Q ss_pred             HHHHHHhhc-----ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc
Q 010123          212 TTIISGALD-----LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE  286 (517)
Q Consensus       212 ~~iI~~vl~-----L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~  286 (517)
                      ..||.+++.     =+=.+|.|||+|..+..++..+++++ +..++..+.||+||||++.. .+++|+|+.||+....+ 
T Consensus       171 AtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~-  247 (432)
T COG4109         171 ATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP-  247 (432)
T ss_pred             HHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC-
Confidence            445555443     35578999999999999999999999 99999999999999999875 78999999999987644 


Q ss_pred             CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       ++++..+|.+.+.+|.+.+++..+.+.|-..+..|+||+|
T Consensus       248 -~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~  287 (432)
T COG4109         248 -STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD  287 (432)
T ss_pred             -CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEc
Confidence             7889999999999999999999999999999999999999

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.47  E-value=7.3e-13  Score=144.43  Aligned_cols=140  Identities=19%  Similarity=0.291  Sum_probs=119.0

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG  257 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g  257 (517)
                      ..+|++||...+.    +.+.-|.|.     +++.++++++.+     ++++|.  .+++++++++++. ++++.|.+++
T Consensus        50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~--~~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVV--TDPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence            4679999999997    344556777     477888988865     557787  4788999999999 9999999999


Q ss_pred             CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccc-cCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          258 HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       258 ~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      ++++||++++ ++++|+|+.+|+.... +...++.++|. ++++++++++++.++++.|.+++.+.+||+|++|.+.|++
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999999864 8999999999997543 33567999987 7889999999999999999999999999999888777777

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.45  E-value=1.1e-12  Score=113.23  Aligned_cols=91  Identities=26%  Similarity=0.364  Sum_probs=80.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDIL  312 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL  312 (517)
                      ++.+++.+.++. ++++.|.+++++++||++++ ++++|+|+.+|+.....+.  +.++.++|..+++++++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            467889999999 99999999999999999865 8999999999998643321  3568899988899999999999999


Q ss_pred             HHHHhCCCcEEEEEe
Q 010123          313 NEFQKGSSHMAAVVK  327 (517)
Q Consensus       313 ~~m~~~~~~~apVVD  327 (517)
                      +.|.+++.+.+||+|
T Consensus        80 ~~m~~~~~~~lpVvd   94 (111)
T cd04603          80 RIFRETEPPVVAVVD   94 (111)
T ss_pred             HHHHHcCCCeEEEEc
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.44  E-value=6.9e-13  Score=137.14  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCccccccccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIR  297 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r  297 (517)
                      ...+|+|+|++.+++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|+......    .+.++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            6778999999544889999999999 99999999888888888754 899999999998764332    24679999999


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++++.++++.|.+++.+.+||+|
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~  307 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVAD  307 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence            999999999999999999999999999998

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.2e-12  Score=140.36  Aligned_cols=116  Identities=22%  Similarity=0.257  Sum_probs=103.7

Q ss_pred             CCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCCEEEEEEhhhH
Q 010123          206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG-----HSRVPIYSGNPKNIIGLLLVKSL  280 (517)
Q Consensus       206 ~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g-----~Sr~PV~ddd~d~iVGiV~~kDL  280 (517)
                      .+++++++.++..+.+.+.+|+.+|+  ++++++..+.|+. ++++++++.+     ...+.|+|.+ ++++|+|+.+++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            47889999999999999999999999  5999999999999 9999998443     3445666654 789999999999


Q ss_pred             hcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          281 LTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       281 l~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +...+  +..++++|.+.+++|+++++.+++.+.|++|+.-.+||||
T Consensus       190 l~a~~--~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         190 LTAEP--DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             hcCCc--HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence            97654  6789999999999999999999999999999999999999

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.9e-12  Score=110.59  Aligned_cols=91  Identities=15%  Similarity=0.243  Sum_probs=79.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----CcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++++++++.++. ++++.+.+.+++++||++++ ++++|+++.+|++......     ..++.++|.++++++++++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            467789999999 99999999999999999865 7999999999998643321     3478888888889999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+.+.+.+||+|
T Consensus        80 ~~l~~~~~~~~~~~~Vv~   97 (113)
T cd04623          80 EAMALMTERRFRHLPVVD   97 (113)
T ss_pred             HHHHHHHHcCCCEeEEEe
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.43  E-value=1.6e-12  Score=111.11  Aligned_cols=91  Identities=12%  Similarity=0.258  Sum_probs=81.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++.++++++++. ++++.+.+++++++||++++ ++++|+++.+|++........++.++|.++++++++++++.++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567899999999 99999999999999999865 8999999999998654444456888888899999999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~Vv~   93 (110)
T cd04605          81 MERHNISALPVVD   93 (110)
T ss_pred             HHHhCCCEEeEEC
Confidence            9999999999998

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.6e-12  Score=111.43  Aligned_cols=91  Identities=13%  Similarity=0.200  Sum_probs=80.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---CcccccccccCCcccCCCCCHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---ETPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---~~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++......   +.++.++|.++++++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            467789999999 99999999999999999865 8999999999998654322   357888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      +..|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (111)
T cd04626          80 LDIMREKQIGRLPVVD   95 (111)
T ss_pred             HHHHHHcCCCeeeEeE
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.7e-12  Score=113.41  Aligned_cols=91  Identities=16%  Similarity=0.217  Sum_probs=75.3

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-----ccccc------ccccCCcccC
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-----TPVSA------VSIRRMPRVP  303 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-----~~V~d------im~r~v~~V~  303 (517)
                      ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....+..     .++.+      +|..++++++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999999 99999999999999999764 89999999999986432211     12322      2335578899


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          304 ADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       304 ~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd  103 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVD  103 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEEC
Confidence            999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2.3e-12  Score=111.70  Aligned_cols=91  Identities=19%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      .+..+++++++. ++++.|.+.++..+||++++ ++++|+|+.+|++....     ..+.++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            366789999999 99999999999999999865 89999999999886432     124678899888999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+++.+.+||+|
T Consensus        80 ~a~~~m~~~~~~~lpVvd   97 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVD   97 (114)
T ss_pred             HHHHHHHHcCCCeEEEEC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=3.8e-12  Score=109.98  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=79.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|++....     ....++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            577899999999 99999999999999999863378999999999986321     123578899888899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          81 YCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHHHHHHcCCCEeeEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.40  E-value=2e-12  Score=118.83  Aligned_cols=118  Identities=18%  Similarity=0.283  Sum_probs=93.0

Q ss_pred             cCCCCChhHH---HHHHHhhcc--cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEh
Q 010123          203 KGGELTHDET---TIISGALDL--TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLV  277 (517)
Q Consensus       203 ~~G~L~~eE~---~iI~~vl~L--~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~  277 (517)
                      |.|.+++.-.   ++++.+.+-  ...+++.+|+  .+++.+.+++++. ++++.|.++|+|.+||+++  |.++|-|+-
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE  113 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITE  113 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecH
Confidence            4567776532   222222222  5578999999  5899999999999 9999999999999999986  789999999


Q ss_pred             hhHhcccccC-----CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          278 KSLLTVRAET-----ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       278 kDLl~~~~~~-----~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .|+.+...++     +.+++++|-.+.|+|++++++..+-+.+..+.  .+.|++
T Consensus       114 ~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e  166 (187)
T COG3620         114 NDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVVE  166 (187)
T ss_pred             HHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe
Confidence            9998765433     46789999999999999999988888776663  555665

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.39  E-value=3.4e-12  Score=109.23  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=80.6

Q ss_pred             cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHH
Q 010123          234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILN  313 (517)
Q Consensus       234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~  313 (517)
                      .++.++++++++. ++.+.+.+++++.+||++++ ++++|+|+.+|++...  .+.++.++|..+++++++++++.++++
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~   77 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH   77 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence            3678899999999 99999999999999999864 8999999999998643  245789998888999999999999999


Q ss_pred             HHHhCCCcEEEEEe
Q 010123          314 EFQKGSSHMAAVVK  327 (517)
Q Consensus       314 ~m~~~~~~~apVVD  327 (517)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (108)
T cd04596          78 MMIWEGIEMLPVVD   91 (108)
T ss_pred             HHHHcCCCeeeEEc
Confidence            99999999999998

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.39  E-value=3.9e-12  Score=108.87  Aligned_cols=92  Identities=41%  Similarity=0.630  Sum_probs=78.6

Q ss_pred             cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC--cccccccccCCcccCCCCCHHHH
Q 010123          234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE--TPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~--~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      +++++++.+.++. ++++.|.+.+++.+||++++.++++|+++.+|++.......  .++.++ +++++++++++++.++
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~   78 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDL   78 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHH
Confidence            3678899999999 99999999999999999764378999999999987654322  356665 5788999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~Vv~   94 (111)
T cd04590          79 LEEMRKERSHMAIVVD   94 (111)
T ss_pred             HHHHHhcCCcEEEEEE
Confidence            9999999999999999

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.38  E-value=4.2e-12  Score=109.65  Aligned_cols=91  Identities=19%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++..+++++++. ++++.|.+.+++++||++++ ++++|+++.+|++....+.    ..++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence            355788999999 99999999999999999865 8999999999998654321    23478888888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|.+++.+.+||+|
T Consensus        80 ~l~~~~~~~~~~~~Vvd   96 (115)
T cd04593          80 ALDRMASRGLRQLPVVD   96 (115)
T ss_pred             HHHHHHHcCCceeeEEe
Confidence            99999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=4.2e-12  Score=108.37  Aligned_cols=79  Identities=14%  Similarity=0.351  Sum_probs=71.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      +++++++++++. ++.+.|.+++++.+||++++.++++|+|+.+|+.....             +.++.+++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-------------~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-------------LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-------------eEEeCCCCcHHHHHHH
Confidence            578999999999 99999999999999999864478999999999975321             6689999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        68 m~~~~~~~lpVvd   80 (98)
T cd04618          68 LLKNKIHRLPVID   80 (98)
T ss_pred             HHHCCCCEeeEEE
Confidence            9999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.38  E-value=2.2e-12  Score=132.95  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=89.7

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCC
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRM  299 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v  299 (517)
                      ..+|+++|++..++.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|+......   .+.++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            468999998532388999999999 99999999999999999865 899999999998754322   2467899998999


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+++...+||+|
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  301 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVD  301 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.38  E-value=5.1e-12  Score=110.25  Aligned_cols=91  Identities=18%  Similarity=0.361  Sum_probs=80.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--------------CcccccccccCCc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--------------ETPVSAVSIRRMP  300 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--------------~~~V~dim~r~v~  300 (517)
                      ++.+++.+.++. ++.+.|.+.+++++||++++ ++++|+|+.+|++......              ..++.++|.++++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            677899999999 99999999999999999865 8999999999997543221              2368888888899


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~  107 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVD  107 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence            999999999999999999999999998

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=5.3e-12  Score=110.33  Aligned_cols=92  Identities=15%  Similarity=0.276  Sum_probs=79.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------------CcccccccccCC
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---------------ETPVSAVSIRRM  299 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---------------~~~V~dim~r~v  299 (517)
                      ++.+++++.++. ++++.+.+.+++.+||++++.++++|+|+.+|++....+.               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            567889999999 9999999999999999986447899999999998644321               246888888889


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+.+.+.+||+|
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~  108 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVD  108 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence            9999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.36  E-value=5.3e-12  Score=137.06  Aligned_cols=100  Identities=15%  Similarity=0.220  Sum_probs=89.9

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR  301 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~  301 (517)
                      ...+++++|+  .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+....  ...++.++|.+++++
T Consensus        87 ~~VKv~~iMi--~~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVF--DTPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT  160 (479)
T ss_pred             hhcccccccc--cCCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence            4567889998  4788999999999 99999999999999999865 7899999999997543  246799999999999


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD  186 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVD  186 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEc
Confidence            99999999999999999999999999

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=6.9e-12  Score=107.46  Aligned_cols=91  Identities=20%  Similarity=0.311  Sum_probs=79.4

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      ++..++.+.++. ++.+.+.+.+++++||++++ ++++|+|+.+|++....+   .+.++.++|.++++.+++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            456789999998 99999999999999999876 899999999999765322   2357888888899999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|.+++...+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (112)
T cd04624          80 AKLMRKNNIRHHLVVD   95 (112)
T ss_pred             HHHHHHcCccEEEEEc
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=6.7e-12  Score=113.12  Aligned_cols=91  Identities=13%  Similarity=0.155  Sum_probs=79.8

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------------------------
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---------------------------  287 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---------------------------  287 (517)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            467789999999 99999999999999999865 8999999999998654211                           


Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~  119 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD  119 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence            3468899888889999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.35  E-value=8.8e-12  Score=105.41  Aligned_cols=88  Identities=9%  Similarity=0.216  Sum_probs=78.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++..+++++++. ++++.|.+++++.+||++ + ++++|+++.+|++....  +.++.++|..+++++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            466789999999 999999999999999997 3 79999999999987543  457888888889999999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++...+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (105)
T cd04599          77 MEEKKIERLPVLR   89 (105)
T ss_pred             HHHcCCCEeeEEE
Confidence            9999999999998

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=6.9e-12  Score=107.28  Aligned_cols=91  Identities=29%  Similarity=0.459  Sum_probs=79.8

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDIL  312 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL  312 (517)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+|+......  .+.++.++|.++++++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            467789999999 99999988999999999865 789999999999865322  23578899888999999999999999


Q ss_pred             HHHHhCCCcEEEEEe
Q 010123          313 NEFQKGSSHMAAVVK  327 (517)
Q Consensus       313 ~~m~~~~~~~apVVD  327 (517)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04639          80 RLMQQGGAPAVPVVD   94 (111)
T ss_pred             HHHHhcCCceeeEEc
Confidence            999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=7.9e-12  Score=109.60  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--C-----------cccccccccCCcc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--E-----------TPVSAVSIRRMPR  301 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~-----------~~V~dim~r~v~~  301 (517)
                      ++.+++.++++. ++++.|.+++++++||++++.++++|+|+.+|++....+.  .           ..+.++|.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467789999999 9999999999999999986336899999999987643211  0           0112356778889


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVD  106 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=7.8e-12  Score=110.24  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=76.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc-----------------cccccccc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET-----------------PVSAVSIR  297 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~-----------------~V~dim~r  297 (517)
                      +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....+...                 ...+.|.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            577899999999 99999999999999999865 899999999999865422111                 11235667


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  109 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVD  109 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence            888999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.34  E-value=5e-12  Score=140.56  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSI  296 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~  296 (517)
                      ++..+|+|+|++  ++.++++++++. ++.+.+.+++++.+||+|++ ++++|+|+.+|+.+...+    .+.++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            566789999985  667899999999 99999999999999999865 789999999999863211    2357889998


Q ss_pred             cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++++++.++++.|.+++.+.+||+|
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd  550 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE  550 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence            8999999999999999999999999999999

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=9.9e-12  Score=108.13  Aligned_cols=91  Identities=20%  Similarity=0.306  Sum_probs=79.7

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-------------CCcccccccccCCcc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-------------TETPVSAVSIRRMPR  301 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-------------~~~~V~dim~r~v~~  301 (517)
                      ++.++++++++. ++.+.|.+.+++++||++++ ++++|+++.+|++.....             ...++.++|.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            466789999999 99999999999999999865 899999999999864321             245688888888999


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVD  105 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.3e-11  Score=106.18  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=76.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---------CcccccccccCCcccCCC
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---------ETPVSAVSIRRMPRVPAD  305 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---------~~~V~dim~r~v~~V~~~  305 (517)
                      ++++++.++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++......         +.++.++|.+++++++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            577899999999 99999999999999999864 7899999999998654321         356888888889999999


Q ss_pred             CCHHHHHHHHHhCCCcEEEEEe
Q 010123          306 MPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       306 ~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++.++++.|.+.+  .+||+|
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~   99 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVD   99 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEe
Confidence            99999999998865  589998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.33  E-value=6.8e-12  Score=108.20  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=76.4

Q ss_pred             ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhcccccC--Cccccccccc--CCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIR--RMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r--~v~~V~~~~~l~  309 (517)
                      ++.++++++++. ++++.+.+++ ++++||++++ ++++|+|+.+|++....+.  +.++.++|..  +++.+.+++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            567889999999 9999887665 8999999765 8899999999998754322  3578888742  366899999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|++++.+.+||+|
T Consensus        80 ~a~~~~~~~~~~~l~Vv~   97 (114)
T cd04801          80 EVLKLLEEQGLDELAVVE   97 (114)
T ss_pred             HHHHHHHHCCCCeeEEEc
Confidence            999999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.33  E-value=1.5e-11  Score=105.20  Aligned_cols=91  Identities=14%  Similarity=0.252  Sum_probs=80.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+.....+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            467799999999 99999999999999999875 7899999999998643221    25788888889999999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|++.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~Vv~   96 (114)
T cd04613          80 ALKKFEDSDYEQLPVVD   96 (114)
T ss_pred             HHHHHhhCCccEeeEEe
Confidence            99999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.33  E-value=1.7e-11  Score=104.49  Aligned_cols=90  Identities=23%  Similarity=0.342  Sum_probs=79.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      ++.+++++.++. ++++.|.+.++..+||+++  ++++|+++.+|++.....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            567889999999 9999999999999999976  789999999999865432   3467888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|.+.+.+.+||+|
T Consensus        79 l~~~~~~~~~~~~Vv~   94 (111)
T cd04611          79 RQLMREHGIRHLVVVD   94 (111)
T ss_pred             HHHHHHcCCeEEEEEC
Confidence            9999999999999998

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.3e-11  Score=107.49  Aligned_cols=91  Identities=13%  Similarity=0.256  Sum_probs=78.4

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCccccccccc--CCcccCCCCCH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIR--RMPRVPADMPL  308 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r--~v~~V~~~~~l  308 (517)
                      ++.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.....    ...++.++|.+  +++++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            467899999999 99999999999999999865 789999999998865432    13467788764  68899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEe
Q 010123          309 YDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       309 ~daL~~m~~~~~~~apVVD  327 (517)
                      .++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~lpVvd   98 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVE   98 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEe
Confidence            9999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.32  E-value=1.9e-11  Score=103.86  Aligned_cols=90  Identities=17%  Similarity=0.273  Sum_probs=79.7

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++..++++.++. ++++.|.++++.++||++++ ++++|+|+.+|++.... ...++.++|.+.++++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            567789999999 99999999999999999865 78999999999986532 2457888888889999999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~vv~   92 (109)
T cd04583          80 VLKRGPKYVPVVD   92 (109)
T ss_pred             HHHcCCceeeEEC
Confidence            9999999999998

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.32  E-value=1.7e-11  Score=104.52  Aligned_cols=90  Identities=20%  Similarity=0.308  Sum_probs=78.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC---cccccccccCCcccCCCCCHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE---TPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~---~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      +++.+++++++. ++++.|.+.+++++||+++  ++++|+++.+|++.......   .++.++|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            567899999999 9999999999999999986  88999999999987543321   15678888899999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|++.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~V~~   94 (111)
T cd04612          79 LKRMAERDIGRLPVVD   94 (111)
T ss_pred             HHHHHhCCCCeeeEEc
Confidence            9999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.32  E-value=2e-11  Score=104.62  Aligned_cols=90  Identities=18%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      +++.++.+.++. ++++.|.+.++..+||+++  ++++|+++.+|++....+    .+.++.++|.+++++|++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            456789999999 9999999999999999976  689999999999865322    245788888888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04589          79 ALLLMTRHRIHRVVVRE   95 (111)
T ss_pred             HHHHHHHhCccEEEEee
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.32  E-value=1.9e-11  Score=104.33  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=79.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--CcccccccccCCcccCCCCCHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMPRVPADMPLYDIL  312 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~~V~~~~~l~daL  312 (517)
                      +++.++.++++. ++.+.|.+.+++++||+++  ++++|+++.+|++.....+  ..++.++|.++++++++++++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            567789999999 9999999999999999976  7899999999998754332  2468888888889999999999999


Q ss_pred             HHHHhCCCcEEEEEe
Q 010123          313 NEFQKGSSHMAAVVK  327 (517)
Q Consensus       313 ~~m~~~~~~~apVVD  327 (517)
                      +.|.+.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~V~~   93 (110)
T cd04588          79 RLMNKHNVGRLIVTD   93 (110)
T ss_pred             HHHHhcCCCEEEEEC
Confidence            999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.5e-11  Score=109.30  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----C--------------------cc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----E--------------------TP  290 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~--------------------~~  290 (517)
                      ++.++.+++++. ++++.+.+.+++++||++++ ++++|+++.+|++......    .                    .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            467889999999 99999999999999999865 8999999999997643221    1                    16


Q ss_pred             cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++|.++++++++++++.++++.|.+.+.+.+||+|
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  116 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD  116 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence            7888888899999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.32  E-value=1.9e-11  Score=105.26  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=78.0

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHHH
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDIL  312 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~daL  312 (517)
                      .++++.++++. ++++.|.+.++..+||++++ ++++|+|+.+|++.....   .+.++.++|..++.+|++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            46789999999 99999999999999999765 889999999998754322   23568898877888999999999999


Q ss_pred             HHHHhCCCcEEEEEe
Q 010123          313 NEFQKGSSHMAAVVK  327 (517)
Q Consensus       313 ~~m~~~~~~~apVVD  327 (517)
                      +.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~Vv~   96 (113)
T cd04607          82 ALMRERSIRHLPILD   96 (113)
T ss_pred             HHHHHCCCCEEEEEC
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.7e-11  Score=106.68  Aligned_cols=91  Identities=11%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-------------cCCcccccccccCCcc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-------------ETETPVSAVSIRRMPR  301 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-------------~~~~~V~dim~r~v~~  301 (517)
                      +++++.+++++. ++++.+.+.+++.+||++++ ++++|+++.+|++....             ....++.++|.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            577899999999 99999999999999999764 89999999999975310             1235677888888899


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd  105 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVN  105 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2e-11  Score=107.74  Aligned_cols=91  Identities=18%  Similarity=0.300  Sum_probs=74.3

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----------ccCCcccccccccCCccc--
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----------AETETPVSAVSIRRMPRV--  302 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----------~~~~~~V~dim~r~v~~V--  302 (517)
                      ++.++..++++. ++++.|.++++..+||++++ ++++|+++.+|+....          ...+.++.++|.++...+  
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            356789999999 99999998999999999865 7899999999987521          112456888886554333  


Q ss_pred             ----CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          303 ----PADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       303 ----~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                          .+++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd  108 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVD  108 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence                3789999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.30  E-value=3e-11  Score=103.29  Aligned_cols=90  Identities=19%  Similarity=0.346  Sum_probs=79.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDIL  312 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL  312 (517)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+|+.+|+......  ...++.++|.++++++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            567889999999 9999999999999999986  789999999998764321  24678899888999999999999999


Q ss_pred             HHHHhCCCcEEEEEe
Q 010123          313 NEFQKGSSHMAAVVK  327 (517)
Q Consensus       313 ~~m~~~~~~~apVVD  327 (517)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~V~~   94 (110)
T cd04595          80 ELMVEHDIGRVPVVE   94 (110)
T ss_pred             HHHHHcCCCeeEEEe
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.30  E-value=3.6e-11  Score=102.46  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=75.7

Q ss_pred             EEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHH
Q 010123          237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQ  316 (517)
Q Consensus       237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~  316 (517)
                      .++++++++. ++++.+.+.+++++||+++  ++++|+++.+|++....   .++.++|..++++|++++++.++++.|.
T Consensus         4 ~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~   77 (104)
T cd04594           4 IKVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMM   77 (104)
T ss_pred             eEECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHH
Confidence            3578999999 9999999999999999985  88999999999986432   3577888888899999999999999999


Q ss_pred             hCCCcEEEEEe
Q 010123          317 KGSSHMAAVVK  327 (517)
Q Consensus       317 ~~~~~~apVVD  327 (517)
                      +++.+.+||+|
T Consensus        78 ~~~~~~~~Vv~   88 (104)
T cd04594          78 KNKTRWCPVVD   88 (104)
T ss_pred             HcCcceEEEEE
Confidence            99999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.30  E-value=3.4e-11  Score=103.00  Aligned_cols=90  Identities=18%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|++.....    .+.++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            567889999999 9999999999999999986  899999999998753211    235688888889999999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04800          79 ALLLMLERGIHHLPVVD   95 (111)
T ss_pred             HHHHHHHcCCCeeeEeE
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.29  E-value=3.5e-11  Score=102.05  Aligned_cols=88  Identities=10%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|++....   .++.++|.+++..+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            566789999998 99999999999999999765 89999999999986432   35778877777889999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++...+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (106)
T cd04582          77 MFAHDMSWLPCVD   89 (106)
T ss_pred             HHHCCCCeeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.29  E-value=3.5e-11  Score=102.07  Aligned_cols=88  Identities=15%  Similarity=0.306  Sum_probs=78.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++.+++.+.++. ++++.+.+.+++.+||+++  ++++|+++.+|++...  ...++.++|..+++++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            577899999999 9999998888999999975  7899999999998642  2456889888888899999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vv~   90 (107)
T cd04610          78 MFRTGISKLPVVD   90 (107)
T ss_pred             HHHhCCCeEeEEC
Confidence            9999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=2.8e-11  Score=106.63  Aligned_cols=91  Identities=14%  Similarity=0.281  Sum_probs=78.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----------------CCccccccccc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----------------TETPVSAVSIR  297 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----------------~~~~V~dim~r  297 (517)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+......                 .+.++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            466789999999 99999999999999999865 889999999998743211                 12468888888


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++++.++++.|.+.+.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            899999999999999999999999998885

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.29  E-value=2.5e-11  Score=103.24  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCC-CCCHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPA-DMPLYDILN  313 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~-~~~l~daL~  313 (517)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++.... .+.++.++|..++.++.+ ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            567889999999 99999999999999999865 89999999999875432 356788988766666666 999999999


Q ss_pred             HHHhCCCcEEEEEe
Q 010123          314 EFQKGSSHMAAVVK  327 (517)
Q Consensus       314 ~m~~~~~~~apVVD  327 (517)
                      .|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~Vv~   93 (110)
T cd04601          80 LLHEHKIEKLPVVD   93 (110)
T ss_pred             HHHHhCCCeeeEEc
Confidence            99999999999998

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.4e-11  Score=101.22  Aligned_cols=89  Identities=17%  Similarity=0.247  Sum_probs=78.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++++++++.++. ++++.+.+.+++++||++++ ++++|+++.++++....  +.++.++|.+++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            567889999998 99999999999999999876 88999999999986432  346778888888999999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vvd   90 (106)
T cd04638          78 MVENNIRRVPVVD   90 (106)
T ss_pred             HHHcCCCEEEEEE
Confidence            9999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=2.3e-11  Score=104.31  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=78.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc------cCCcccccccccCCcccCCCCCH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA------ETETPVSAVSIRRMPRVPADMPL  308 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~------~~~~~V~dim~r~v~~V~~~~~l  308 (517)
                      ++.+++++.++. ++.+.+.+.+++.+||++++ ++++|+|+.+|++....      ....++.++|.++++++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            466789999999 99999998899999999865 78999999999985322      12457888888888899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEe
Q 010123          309 YDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       309 ~daL~~m~~~~~~~apVVD  327 (517)
                      .++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~   98 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVD   98 (114)
T ss_pred             HHHHHHHHHhCCCccCEEE
Confidence            9999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.28  E-value=2.5e-11  Score=104.01  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             ecCCCChhHHHHHHHHHcCC-----cEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHH
Q 010123          239 LDVNSKLDWEAIGKILARGH-----SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILN  313 (517)
Q Consensus       239 v~~d~tl~~eal~~l~~~g~-----Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~  313 (517)
                      +.+++++. ++++.|.++++     ..+||++++ ++++|+|+.+|++...  .+.++.++|..+++.+++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            46788898 99999987773     678999765 8899999999998643  345788988778889999999999999


Q ss_pred             HHHhCCCcEEEEEe
Q 010123          314 EFQKGSSHMAAVVK  327 (517)
Q Consensus       314 ~m~~~~~~~apVVD  327 (517)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (109)
T cd04606          78 LFEKYDLLALPVVD   91 (109)
T ss_pred             HHHHcCCceeeeEC
Confidence            99999999999998

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.28  E-value=2.3e-11  Score=108.48  Aligned_cols=91  Identities=19%  Similarity=0.291  Sum_probs=79.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc--------------------------cCC
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA--------------------------ETE  288 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~--------------------------~~~  288 (517)
                      ++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|++....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            577899999999 99999999999999999764 89999999999875321                          123


Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++.++|..+++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd  119 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR  119 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence            568888888899999999999999999999999999998

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.28  E-value=3.5e-11  Score=104.08  Aligned_cols=91  Identities=16%  Similarity=0.257  Sum_probs=77.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCC--CCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPA--DMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~--~~~l~d  310 (517)
                      ++..+..++++. ++++.|.+.+++++||+++.  .++++|+++.+|++.... ...+++++|.++...+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            567889999999 99999998999999999851  378999999999875432 345688988777777755  999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|++++.+.+||+|
T Consensus        81 ~l~~~~~~~~~~~pVv~   97 (114)
T cd04602          81 ANEILRESKKGKLPIVN   97 (114)
T ss_pred             HHHHHHhcCCCceeEEC
Confidence            99999999999999998

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=4.5e-11  Score=102.53  Aligned_cols=90  Identities=13%  Similarity=0.239  Sum_probs=78.2

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCCCCHHHH
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      ...+.+++++. ++++.+.+.+++++||++++ ++++|+++.+|++....+    .+.++.++|..++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            45788999998 99999999999999999865 889999999999863221    2357888888889999999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|.+.+.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~Vvd   96 (113)
T cd04615          81 RWLMSNNNISRLPVLD   96 (113)
T ss_pred             HHHHHHcCCCeeeEEC
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.27  E-value=1.5e-11  Score=109.10  Aligned_cols=82  Identities=18%  Similarity=0.319  Sum_probs=70.8

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++...    ...+.++.++|.++++++.+++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            577899999999 99999999999999999865 7899999999998532    12357899999999999999999999


Q ss_pred             HHHHHHhC
Q 010123          311 ILNEFQKG  318 (517)
Q Consensus       311 aL~~m~~~  318 (517)
                      +.+.|...
T Consensus        81 v~~~~~~~   88 (124)
T cd04608          81 LSRILETD   88 (124)
T ss_pred             HHhhcccC
Confidence            99977543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.27  E-value=4.2e-11  Score=103.39  Aligned_cols=90  Identities=16%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC--------------CcccccccccCCc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET--------------ETPVSAVSIRRMP  300 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~--------------~~~V~dim~r~v~  300 (517)
                      ++.+++.+.++. ++++.|.+.++..+||+++  ++++|+++.+|++......              ..++.++|.++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            467789999999 9999999999999999976  8999999999998654221              2457788888899


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++.++++.|.+.+.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVD  105 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence            999999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.27  E-value=4e-11  Score=102.70  Aligned_cols=91  Identities=14%  Similarity=0.207  Sum_probs=78.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+++.......    ..++.++|.++++++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            455788999998 99999988899999999865 7999999999987654321    24688998888899999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~Vv~   97 (114)
T cd04604          81 ALELMEENKITALPVVD   97 (114)
T ss_pred             HHHHHHHcCCCEEEEEC
Confidence            99999999999999998

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=6.3e-11  Score=100.39  Aligned_cols=78  Identities=6%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNE  314 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~  314 (517)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....             ++++++++++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~-------------~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSE-------------VVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCC-------------cEEecCCCCHHHHHHH
Confidence            567899999999 99999999999999999865 89999999999986421             6789999999999999


Q ss_pred             HHhCCCcEEEEEe
Q 010123          315 FQKGSSHMAAVVK  327 (517)
Q Consensus       315 m~~~~~~~apVVD  327 (517)
                      |.+++.+.+||+|
T Consensus        67 m~~~~~~~lpVv~   79 (96)
T cd04614          67 MKRNRIEQIPIIN   79 (96)
T ss_pred             HHHhCCCeeeEEC
Confidence            9999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=7e-11  Score=101.18  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++..+++++++. ++++.|.+.+++.+||+++  ++++|+++.+|++....     ....++.++|.++++++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            466789999999 9999999999999999986  48999999999986431     124568888878888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~Vv~   96 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVD   96 (112)
T ss_pred             HHHHHHHHcCCCeeEEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=4.9e-11  Score=102.82  Aligned_cols=90  Identities=13%  Similarity=0.313  Sum_probs=75.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCcccCCC--CC
Q 010123          235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMPRVPAD--MP  307 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~~V~~~--~~  307 (517)
                      ++..++.+.++. ++++.+.+++ +..+||.++  ++++|+|+.+|++....+    .+.++.++|.+++++++++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            456788999998 9999998888 667777763  789999999999864322    1357888888888889887  78


Q ss_pred             HHHHHHHHHhCCCcEEEEEe
Q 010123          308 LYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       308 l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++++.|.+++.+.+||+|
T Consensus        79 l~~a~~~~~~~~~~~~pVvd   98 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLD   98 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEc
Confidence            99999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.26  E-value=5.1e-11  Score=102.02  Aligned_cols=90  Identities=18%  Similarity=0.244  Sum_probs=77.5

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc----cC-CcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA----ET-ETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~----~~-~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++..+..+.++. ++++.|.+++++++||+++  ++++|+|+.+|++....    .. ..++.++|.++++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            567789999999 9999999999999999975  89999999999874221    11 2578888888888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~l~Vv~   96 (113)
T cd04587          79 EALHLMVQGKFRHLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCcccEEC
Confidence            999999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.25  E-value=5.2e-11  Score=102.43  Aligned_cols=86  Identities=14%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHH
Q 010123          234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDI  311 (517)
Q Consensus       234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~da  311 (517)
                      .++..+++++++. ++.+.+.+.+++++||+++.  .++++|+|+.+|+......       +|.++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            4677899999999 99999999999999999762  3789999999999865432       677888899999999999


Q ss_pred             HHHHHhCCCcEEEEEe
Q 010123          312 LNEFQKGSSHMAAVVK  327 (517)
Q Consensus       312 L~~m~~~~~~~apVVD  327 (517)
                      ++.|++++.+.+||++
T Consensus        74 ~~~~~~~~~~~~pVv~   89 (105)
T cd04591          74 HQLFRKLGLRHLLVVD   89 (105)
T ss_pred             HHHHHHcCCCEEEEEE
Confidence            9999999999999997

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.25  E-value=1e-10  Score=127.01  Aligned_cols=99  Identities=17%  Similarity=0.243  Sum_probs=88.3

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR  301 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~  301 (517)
                      ...++.++|++  +++++.+++++. ++++.|.+++++.+||+++  ++++|+|+.+|+....  ...+++++|.+++++
T Consensus        86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~lit  158 (475)
T TIGR01303        86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVT  158 (475)
T ss_pred             hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceE
Confidence            35678889984  778999999999 9999999999999999875  6899999999997543  346799999999999


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus       159 v~~~~sL~eAl~lM~~~~i~~LPVVD  184 (475)
T TIGR01303       159 APADTEPRKAFDLLEHAPRDVAPLVD  184 (475)
T ss_pred             eCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            99999999999999999999999999

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=5e-11  Score=103.82  Aligned_cols=90  Identities=12%  Similarity=0.208  Sum_probs=78.3

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------CCcccccccccCCc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------TETPVSAVSIRRMP  300 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------~~~~V~dim~r~v~  300 (517)
                      ++.+++++.++. ++.+.+.+.+++++||+++  ++++|+++.+|+......              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            567899999999 9999999999999999985  799999999999754211              12467888888899


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++.++++.|.+++...+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~  105 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVD  105 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence            999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.25  E-value=8.4e-11  Score=128.58  Aligned_cols=144  Identities=13%  Similarity=0.109  Sum_probs=105.5

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCC-hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELT-HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP  262 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~-~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~P  262 (517)
                      .+++.++-..+...+--+--....+ ++.++.++.+.++     +..|+  ++++++++++++. ++++.|.+++++.+|
T Consensus        64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~-----~~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~~lp  135 (505)
T PLN02274         64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSR-----RVGFV--SDPVVKSPSSTIS-SLDELKASRGFSSVC  135 (505)
T ss_pred             ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhcc-----ccccc--CCCeeeCCCCcHH-HHHHHHHhcCCceEE
Confidence            4566676665542210000000123 3345677777654     22266  3788999999999 999999999999999


Q ss_pred             EEeCC--CCCEEEEEEhhhHhcccccCCcccccccccC--CcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          263 IYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRR--MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       263 V~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~--v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      |++++  .++++|+|+.+|+.... ..+.++.++|.++  ++++++++++.++++.|.+++.+.+||+|+.|...|++
T Consensus       136 VvD~~~~~GklvGIVT~~DL~~v~-~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI  212 (505)
T PLN02274        136 VTETGTMGSKLLGYVTKRDWDFVN-DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV  212 (505)
T ss_pred             EEeCCCcCCeEEEEEEHHHHhhcc-ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence            99863  36899999999997543 3467899999766  77999999999999999999999999999655555554

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=8.9e-11  Score=100.53  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc-ccc----CCcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV-RAE----TETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~-~~~----~~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++.++++++++. ++.+.|.+.+++.+||+++  ++++|+++.+|++.. ...    ...++.++|.+.+.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            567889999999 9999999999999999986  899999999998632 111    12348888888899999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~V~~   96 (113)
T cd04622          79 EAARLMREHQVRRLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCeeeEEC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.24  E-value=4.9e-11  Score=128.67  Aligned_cols=100  Identities=19%  Similarity=0.339  Sum_probs=85.0

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSI  296 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~  296 (517)
                      |...+|+++|.+  ++.++.+++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....+    .+.++.++|.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~  407 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMS  407 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcC
Confidence            788999999985  788999999999 99999999999999999865 789999999999864322    2357899998


Q ss_pred             cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++|++++++.++++.|.+++  . +||+
T Consensus       408 ~~~~~v~~~~~l~~a~~~~~~~~--~-~vV~  435 (454)
T TIGR01137       408 KKFIQIGEGEKLSDLSKFLEKNS--S-AIVT  435 (454)
T ss_pred             CCCeEECCcCcHHHHHHHHHHCC--e-eEEE
Confidence            88889999999999999998864  3 4455

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=99.89  Aligned_cols=90  Identities=14%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCcccccccccCCcccCCCCCHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSAVSIRRMPRVPADMPLY  309 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~dim~r~v~~V~~~~~l~  309 (517)
                      ++..+++++++. ++++.+.+++++.++|.+ + ++++|+++.+|++....+     ...++.++|..+++++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567889999999 999999888888887765 3 799999999999865322     23578899877888999999999


Q ss_pred             HHHHHHHhCCCcEEEEEe
Q 010123          310 DILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       310 daL~~m~~~~~~~apVVD  327 (517)
                      ++++.|.+++...+||+|
T Consensus        79 ~a~~~m~~~~~~~l~Vv~   96 (112)
T cd04625          79 EVRRLMVERHLRYLPVLD   96 (112)
T ss_pred             HHHHHHHHcCCCeeeEEE
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.23  E-value=5e-11  Score=130.14  Aligned_cols=99  Identities=13%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             EEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccCCccccccccc--CCcccCCCCCHHHHH
Q 010123          237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIR--RMPRVPADMPLYDIL  312 (517)
Q Consensus       237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r--~v~~V~~~~~l~daL  312 (517)
                      .++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.......+.+++++|.+  +++++++++++.+++
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl  186 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN  186 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence            4889999999 99999999999999999862  378999999999975433346789999975  678899999999999


Q ss_pred             HHHHhCCCcEEEEEeeCCCCcccc
Q 010123          313 NEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       313 ~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      +.|.+++...+||+|+.|...|++
T Consensus       187 ~lM~e~~i~~LPVVD~~g~LvGII  210 (502)
T PRK07107        187 DIIWDHKLNTLPIVDKNGNLVYLV  210 (502)
T ss_pred             HHHHHcCCCEEEEEcCCCeEEEEE
Confidence            999999999999999666666665

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.22  E-value=1.1e-10  Score=101.13  Aligned_cols=91  Identities=11%  Similarity=0.171  Sum_probs=79.0

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-------------cCCcccccccccCCcc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-------------ETETPVSAVSIRRMPR  301 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-------------~~~~~V~dim~r~v~~  301 (517)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+|+.+|+.....             ....++.++|..++++
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456789999999 99999999999999999875 89999999999875421             1235688888888999


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~  105 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVE  105 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence            99999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.21  E-value=1.4e-10  Score=98.41  Aligned_cols=88  Identities=23%  Similarity=0.391  Sum_probs=73.9

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++.+++.++++. ++.+.|.+++++++||+++  ++++|+++.+|+.....+.    ..++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            456789999999 9999999999999999985  7899999999998753321    35688888888889999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|++ .. .+||+|
T Consensus        79 ~~~~~~~-~~-~~~vv~   93 (110)
T cd04609          79 LSELLDR-GN-VAVVVD   93 (110)
T ss_pred             HHHHHHh-CC-ceeEEe
Confidence            9999998 33 478888

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=1.1e-10  Score=101.31  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=78.3

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------CCcccccccccCCc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------TETPVSAVSIRRMP  300 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------~~~~V~dim~r~v~  300 (517)
                      +++.+++++++. ++.+.|.+.+++++||+++  ++++|+++.+|++.....              ...++.++|.++++
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            466789999999 9999999999999999985  899999999998764221              13467788888899


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++.++++.|.+.+.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVD  105 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence            999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.20  E-value=1.2e-10  Score=127.10  Aligned_cols=144  Identities=11%  Similarity=0.149  Sum_probs=108.9

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCCh-hHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTH-DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP  262 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~-eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~P  262 (517)
                      .+|+.++-..+..++.-+--.+.++. ++.+.++++.+     +++.|.+  +++++++++++. ++++.|.+++++.+|
T Consensus        60 ~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vp  131 (495)
T PTZ00314         60 TVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSIL  131 (495)
T ss_pred             ccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEE
Confidence            45666766655532211001112233 34556666643     4457763  678999999999 999999999999999


Q ss_pred             EEeCC--CCCEEEEEEhhhHhcccccCCccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          263 IYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       263 V~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      |++++  .++++|+|+.+|+.... ..+.+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.|...|++
T Consensus       132 Vvd~~~~~gkLvGIVt~~DL~~~~-~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII  208 (495)
T PTZ00314        132 ITVDGKVGGKLLGIVTSRDIDFVK-DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV  208 (495)
T ss_pred             EEeCCccCCeEEEEEEHHHHhhcc-cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE
Confidence            99863  36899999999997543 345789999876  788999999999999999999999999999888888887

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=2.9e-10  Score=95.42  Aligned_cols=91  Identities=21%  Similarity=0.320  Sum_probs=78.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC----cccccccccCCcccCCCCCHHH
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE----TPVSAVSIRRMPRVPADMPLYD  310 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~----~~V~dim~r~v~~V~~~~~l~d  310 (517)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|++.......    ..+.++|..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            466789999999 99999999999999999875 79999999999987553321    1156678888999999999999


Q ss_pred             HHHHHHhCCCcEEEEEe
Q 010123          311 ILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       311 aL~~m~~~~~~~apVVD  327 (517)
                      +++.|.+.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~V~~   96 (113)
T cd02205          80 AAELMLEHGIRRLPVVD   96 (113)
T ss_pred             HHHHHHHcCCCEEEEEc
Confidence            99999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=2.7e-10  Score=103.28  Aligned_cols=90  Identities=12%  Similarity=0.261  Sum_probs=78.1

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------------------------
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----------------------------  286 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----------------------------  286 (517)
                      ++++++.++++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            567899999999 9999999999999999985  789999999998754211                            


Q ss_pred             --------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 --------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 --------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                              ...++.++|.++++++++++++.++++.|++.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~  127 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE  127 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                    13457778888899999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.15  E-value=1.6e-10  Score=115.85  Aligned_cols=102  Identities=11%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMP  300 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~  300 (517)
                      .+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+|+.+|++.....   .+.+++++|.++++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999852 278899999999 99999999999999999865 899999999999865321   24679999989999


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~  259 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDD  259 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence            9999999999999999999999999994

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.15  E-value=3.4e-10  Score=97.95  Aligned_cols=90  Identities=17%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             ceEEecCCCChhHHHHHHHHHcC-CcEEEEEeCCCCCEEEEEEhhhHhccccc-------CCcccccccccCCcccCCCC
Q 010123          235 STFSLDVNSKLDWEAIGKILARG-HSRVPIYSGNPKNIIGLLLVKSLLTVRAE-------TETPVSAVSIRRMPRVPADM  306 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g-~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-------~~~~V~dim~r~v~~V~~~~  306 (517)
                      ++.++++++++. ++++.+...+ ++.+||+++  ++++|+|+.+|++.....       .+.++.++|..+++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            455788999999 9999998877 899999986  899999999999754321       24578899888888999999


Q ss_pred             CHHHHHHHHHhCCCc---EEEEEe
Q 010123          307 PLYDILNEFQKGSSH---MAAVVK  327 (517)
Q Consensus       307 ~l~daL~~m~~~~~~---~apVVD  327 (517)
                      ++.+++..|.+++..   ..+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~  102 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVT  102 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEe
Confidence            999999999988753   346777

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.13  E-value=6.8e-10  Score=95.45  Aligned_cols=96  Identities=21%  Similarity=0.355  Sum_probs=83.9

Q ss_pred             ccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-c--ccccccccCCcccC
Q 010123          227 EEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-T--PVSAVSIRRMPRVP  303 (517)
Q Consensus       227 ~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-~--~V~dim~r~v~~V~  303 (517)
                      .++|.  .+++++.++.++. ++...|.+++++++||.++  ++++|+++.+|++....... .  ++.++|.++++++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~   76 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD   76 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence            34555  5788999999999 9999999999999999975  37999999999998765432 2  48889888999999


Q ss_pred             CCCCHHHHHHHHHh-CCCcEEEEEe
Q 010123          304 ADMPLYDILNEFQK-GSSHMAAVVK  327 (517)
Q Consensus       304 ~~~~l~daL~~m~~-~~~~~apVVD  327 (517)
                      ++.++.++++.|.+ ++.+.+||+|
T Consensus        77 ~~~~~~~~~~~m~~~~~~~~lpVv~  101 (117)
T COG0517          77 PDTPLEEALELMVERHKIRRLPVVD  101 (117)
T ss_pred             CCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            99999999999999 7999999999

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.01  E-value=8.5e-10  Score=118.72  Aligned_cols=105  Identities=14%  Similarity=0.174  Sum_probs=91.2

Q ss_pred             hcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc----ccCCcccccc
Q 010123          219 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR----AETETPVSAV  294 (517)
Q Consensus       219 l~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~----~~~~~~V~di  294 (517)
                      -++--.+++++|+.  ..+++++..++. ++.++|.+.|.|.+.|++++ +...|||+.+|+....    .....+|+++
T Consensus       144 ~e~~~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~ev  219 (610)
T COG2905         144 SEFILTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEV  219 (610)
T ss_pred             chHHHHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhh
Confidence            33444568888984  678999999999 99999999999988888765 8899999999997642    2235789999


Q ss_pred             cccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          295 SIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       295 m~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      |+.|+.+|...+.+.+|+-.|.++++|.+||.+
T Consensus       220 mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e  252 (610)
T COG2905         220 MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE  252 (610)
T ss_pred             hccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence            999999999999999999999999999999987

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.94  E-value=3.1e-09  Score=96.14  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---c------------ccccc----
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---P------------VSAVS----  295 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~------------V~dim----  295 (517)
                      ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++........   .            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            678899999999 99999999999999999865 899999999999865432111   1            23354    


Q ss_pred             -----ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123          296 -----IRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG  330 (517)
Q Consensus       296 -----~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG  330 (517)
                           .++++++.+++++.++++.|.+++.+.+||+|+.+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                 36788999999999999999999999999999543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.84  E-value=1.3e-08  Score=112.74  Aligned_cols=56  Identities=13%  Similarity=0.252  Sum_probs=50.5

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..+|+|+|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+..
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~  122 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLAR  122 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHH
Confidence            4689999984  788999999999 99999999999999999865 89999999999864

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.62  E-value=8e-08  Score=73.39  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=35.1

Q ss_pred             cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d   37 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD   37 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            4678989999999999999999999999999999999

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.51  E-value=1.6e-07  Score=71.66  Aligned_cols=55  Identities=24%  Similarity=0.483  Sum_probs=50.6

Q ss_pred             cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      |+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.+.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l   55 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKAL   55 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhh
Confidence            6789996  899999999999 99999999999999999876 8999999999998754

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=2.7e-06  Score=91.03  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             cccccccccccc-eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCccc
Q 010123          224 KTAEEAMTPIES-TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRV  302 (517)
Q Consensus       224 ~tV~dIMtPr~~-vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V  302 (517)
                      .++.++|.+... .+...++.+.. ++++.|...+.+.+.|++++ ++++|+|+.+++.....+ ...+.+.+.....+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            567888853211 12334556677 89999999999999999876 899999999999765443 346777777778899


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          303 PADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       303 ~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++.+++..|.+.... +||||
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~  374 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVD  374 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence            9999999999999997777 89998

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.35  E-value=2.5e-06  Score=90.63  Aligned_cols=91  Identities=15%  Similarity=0.187  Sum_probs=75.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC-----cc-cccc------cccCCccc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE-----TP-VSAV------SIRRMPRV  302 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~-----~~-V~di------m~r~v~~V  302 (517)
                      ++..+..++++. ++++.|...++|.+||++.+ ++.+|..+..|+.....+..     .. ++..      -..+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588999999999 99999999999999999876 77799999999986544431     11 2221      12346789


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          303 PADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       303 ~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++.++..++..|..+++|.+.|||
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEc
Confidence            9999999999999999999999999

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.28  E-value=1.1e-05  Score=85.26  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=73.1

Q ss_pred             EEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHH
Q 010123          237 FSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQ  316 (517)
Q Consensus       237 v~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~  316 (517)
                      ....++.+.. ++++.+...+.....|++++ +++.|+|..+++..+... ...+.+.+....++|++++++.+++..|.
T Consensus       253 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (363)
T TIGR01186       253 ITKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK-AQGLQDVLIDDIYTVDAGTLLRETVRKVL  329 (363)
T ss_pred             eeecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc-CCchhhhhccCCceECCCCcHHHHHHHHH
Confidence            3455666777 89999999999999999865 799999999998866543 34577777788889999999999999999


Q ss_pred             hCCCcEEEEEe
Q 010123          317 KGSSHMAAVVK  327 (517)
Q Consensus       317 ~~~~~~apVVD  327 (517)
                      +.+.. +||+|
T Consensus       330 ~~~~~-~~v~~  339 (363)
T TIGR01186       330 KAGIK-VPVVD  339 (363)
T ss_pred             hCCCC-EEEEC
Confidence            99999 99999

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.19  E-value=2.3e-06  Score=93.35  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=83.8

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCC----CEEEEEEhhhHhccccc----------
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK----NIIGLLLVKSLLTVRAE----------  286 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d----~iVGiV~~kDLl~~~~~----------  286 (517)
                      +++.+|+|+|.+  ++++++.-..+. .+.+.++.+.|..+||+|+..+    ++.|+|....++.....          
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            467789999995  899999999998 8999999999999999985433    67888876666531100          


Q ss_pred             ----------------C----------------CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ----------------T----------------ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ----------------~----------------~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                      .                -.++..+|...+++|+++|++..++..|++-+.+.+.||+
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~  728 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVP  728 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEec
Confidence                            0                1244556667788999999999999999999999999998

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.07  E-value=9.9e-06  Score=84.84  Aligned_cols=148  Identities=11%  Similarity=0.119  Sum_probs=112.4

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCC-ChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEE
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGEL-THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV  261 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L-~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~  261 (517)
                      ..+++.|....+.+++.-+--...- .+++..+++++-.|..--   ++    +.+.++++.++. ++++.-..++|+.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~---~~----~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGF---IN----NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhccc---cc----CCcccCCcccch-hhhhhccccccccc
Confidence            3567777777666543211001111 355677788877665422   22    456788999999 99999899999999


Q ss_pred             EEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccccccc
Q 010123          262 PIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSIS  339 (517)
Q Consensus       262 PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~  339 (517)
                      ||.++.  ..+++|+|+.+|+-.. .+..+.+.++|....++.+...++.++-+.+++.+...+||||+.|...-++..+
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rt  221 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRT  221 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence            999643  2579999999998655 5557889999988889999999999999999999999999999999888887443

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.89  E-value=1e-05  Score=87.91  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR  301 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~  301 (517)
                      .+.+++++|++  +++++++++++. ++++.|.++++..+||+|++ ++++|+|+.+|++....+.  ..+++|.....+
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv~  266 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAVK  266 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCCC
Confidence            56789999986  688899999999 99999999999999999865 7899999999999876543  346776655555


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++.+.+.+..|.+++...++|.-
T Consensus       267 ~~~~~~l~~~~~~~~~~R~~wL~v~~  292 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKNRIIWLLVLL  292 (449)
T ss_pred             CCcchhhhchHHHHHHhccchHHHHH
Confidence            55678889999999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.70  E-value=7.8e-05  Score=64.04  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|..  .+.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            3568999974  678899999999 99999999999999999865 78999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.62  E-value=0.00015  Score=61.69  Aligned_cols=59  Identities=20%  Similarity=0.335  Sum_probs=51.0

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ++...++.++|.+  ++.++++++++. ++++.+.+++...+||++++ ++++|+|+.+|++.
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            3445679999985  567899999999 99999999999999999865 89999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.57  E-value=9.6e-05  Score=73.57  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=38.0

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++.++|.++++++.+++++.++.+.|.+++++-+||+|
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd  210 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD  210 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec
Confidence            4578899999999999999999999999999999999999

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.56  E-value=0.0002  Score=62.42  Aligned_cols=55  Identities=13%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+|+++|.+  ++..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999985  678899999999 99999999999999999865 78999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.53  E-value=0.00015  Score=62.21  Aligned_cols=58  Identities=21%  Similarity=0.345  Sum_probs=50.4

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+...+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            467889998644567899999999 99999999999999999864 78999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00017  Score=62.46  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC--CCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP--KNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~--d~iVGiV~~kDLl~  282 (517)
                      +.+.+++++|+...++.++++++++. ++++.|.++++.++||++++.  ++++|+|+..|++.
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            34667889997323688999999998 999999999999999998652  58999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.52  E-value=0.00031  Score=77.34  Aligned_cols=100  Identities=15%  Similarity=0.222  Sum_probs=73.0

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC-
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM-  299 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v-  299 (517)
                      ..+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++...... ...+- .... 
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~-a~~d~-~grL~  233 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPL-ELLDS-SKRYV  233 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChh-hhhhh-ccCee
Confidence            45678999999766899999999999 99999999999999999865 78999999999997642211 11121 1111 


Q ss_pred             --cccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123          300 --PRVPADMPLYDILNEFQKGSSHMAAV  325 (517)
Q Consensus       300 --~~V~~~~~l~daL~~m~~~~~~~apV  325 (517)
                        ..+..+ ...+..+.+.+.+...+.|
T Consensus       234 V~~av~~~-~~~~ra~~Lv~aGvd~i~v  260 (502)
T PRK07107        234 VGAGINTR-DYAERVPALVEAGADVLCI  260 (502)
T ss_pred             eeeccChh-hHHHHHHHHHHhCCCeEee
Confidence              123333 3556777788888877654

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00018  Score=61.95  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=50.1

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|..  ++.++.+++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            34678899974  788899999999 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.50  E-value=0.0002  Score=62.47  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd   96 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD   96 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence            568899988999999999999999999999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.44  E-value=0.00017  Score=80.06  Aligned_cols=111  Identities=9%  Similarity=0.093  Sum_probs=83.0

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------------
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------------  286 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------------  286 (517)
                      ...+|+++|+. .+++++++++++. ++.+.|.+++++++||++++ ++++|+|+.+|++.....               
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            36789999982 4789999999999 99999999999999999866 899999999999864321               


Q ss_pred             -----------CCcccccccccCCccc---CCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          287 -----------TETPVSAVSIRRMPRV---PADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       287 -----------~~~~V~dim~r~v~~V---~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                                 +..++.++|.+.+..+   +...+...+.+.|++.+....|++... -..|++
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~-ll~gIl  383 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGL-LLAAIL  383 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Confidence                       0113445555554443   345566788888999998888887532 345555

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.35  E-value=0.00041  Score=59.32  Aligned_cols=56  Identities=21%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3568899974  577899999999 99999999999999999865 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.34  E-value=0.00039  Score=59.62  Aligned_cols=58  Identities=19%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.+.++.++|.+  ++.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            356789999975  688999999999 99999999999999999865 79999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.28  E-value=0.00023  Score=72.12  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=38.5

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      +.+..+||.|++++|++++++.++.+.|++++++.+||+||
T Consensus       244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~  284 (382)
T COG3448         244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE  284 (382)
T ss_pred             cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc
Confidence            55678999999999999999999999999999999999994

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.28  E-value=0.0006  Score=57.92  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=41.9

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ++++.+++++. ++++.|.+++..++||++++.++++|+|+.+|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            67899999999 99999999999999999864478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.25  E-value=0.0004  Score=61.02  Aligned_cols=60  Identities=22%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             cccccccccccccceEEec----CCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLD----VNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~----~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|++...++.++    +++++. ++++.|.+++.+++||++++.++++|+|+..|++.
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567899997533333443    678888 99999999999999999864358999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.25  E-value=0.00098  Score=73.04  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=73.0

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccc----cccCC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAV----SIRRM  299 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~di----m~r~v  299 (517)
                      .+++++|++  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++......  +..+.    +....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999984  789999999999 99999999999999999865 7999999999999764422  22221    11222


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                        +.-.....+.+..|.+.+... +|+|
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D  246 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVD  246 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence              222334778899999999888 5677

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.25  E-value=0.0006  Score=57.34  Aligned_cols=56  Identities=20%  Similarity=0.382  Sum_probs=49.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.+++++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3568899975  577899999998 99999999999999999865 78999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.25  E-value=0.00086  Score=56.38  Aligned_cols=54  Identities=15%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +++++|.+  .+..+++++++. ++++.|.++++..+||++++ ++++|+|+.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47889975  466789999998 99999999999999999865 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.24  E-value=0.0012  Score=72.56  Aligned_cols=110  Identities=18%  Similarity=0.244  Sum_probs=79.4

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---ccccccccCC
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---PVSAVSIRRM  299 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~V~dim~r~v  299 (517)
                      ..+++++|++ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++......+.   .-..++....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            4579999984 4788999999999 99999999999999999876 899999999999865422111   1112223334


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEee-CCCCcccccc
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVKV-KGKSKKSQSI  338 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVDE-yG~~~G~~~~  338 (517)
                      +.+.++  -.+.++.|.+.+.+.+ |+|. +|...++++.
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~  259 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDR  259 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHH
Confidence            444442  2788889999999965 5663 5666665543

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.24  E-value=0.00063  Score=58.93  Aligned_cols=58  Identities=17%  Similarity=0.441  Sum_probs=51.2

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ....+++++|.+  .+.++++++++. ++++.|.+.+.+++||++++ ++++|+|+.+|++.
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            456679999974  788999999998 99999999999999999864 89999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00069  Score=57.57  Aligned_cols=55  Identities=16%  Similarity=0.383  Sum_probs=48.5

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578899964  677899999998 9999999999999999974  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.20  E-value=0.00077  Score=57.78  Aligned_cols=56  Identities=14%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.++.++|.  .++.++++++++. ++++.|.+++...+||+++  ++++|+|+..|++.
T Consensus        58 ~~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMT--KPLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            4567889996  3688999999998 9999999999999999975  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.0019  Score=71.29  Aligned_cols=102  Identities=16%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             cccccccccc---ceEEecCC-CChhHHHHHHHHHcCCcEEEEE-eCCCCCEEEEEEhhhHhccccc-------------
Q 010123          225 TAEEAMTPIE---STFSLDVN-SKLDWEAIGKILARGHSRVPIY-SGNPKNIIGLLLVKSLLTVRAE-------------  286 (517)
Q Consensus       225 tV~dIMtPr~---~vv~v~~d-~tl~~eal~~l~~~g~Sr~PV~-ddd~d~iVGiV~~kDLl~~~~~-------------  286 (517)
                      -..++|.|+.   ....+..+ .+++ +....|.++.|+.+||+ +++...++|+|..+|+......             
T Consensus       544 ~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~  622 (696)
T KOG0475|consen  544 LAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI  622 (696)
T ss_pred             hhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc
Confidence            3455665532   24444444 7888 88889999999999988 4455789999999998642110             


Q ss_pred             --------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 --------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 --------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                    ....++++|.-.+.+|...+|...++++|++-+.....|..
T Consensus       623 ~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~  677 (696)
T KOG0475|consen  623 YFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK  677 (696)
T ss_pred             ccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc
Confidence                          01246677766777899999999999999988877776643

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.00085  Score=56.78  Aligned_cols=55  Identities=18%  Similarity=0.462  Sum_probs=49.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.+++++|.+  ++.++++++++. ++++.+.+.+.+++||+++  ++++|+|+.+|++.
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            5578999975  678899999998 9999999999999999975  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.00091  Score=58.26  Aligned_cols=52  Identities=21%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123          226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL  281 (517)
Q Consensus       226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl  281 (517)
                      +.++|.  .++.++++++++. ++++.|.+++.+++||++++ ++++|+|+..|+.
T Consensus        70 ~~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            345776  4788999999998 99999999999999999865 7899999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.00088  Score=57.30  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=47.8

Q ss_pred             ccccccccccccceEEecCC--CChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVN--SKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d--~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  ++.+++++  +++. ++++.|.+++..++||++++ ++++|+|+.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4678899974  67778776  6787 99999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.16  E-value=0.00072  Score=70.06  Aligned_cols=58  Identities=21%  Similarity=0.365  Sum_probs=52.0

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++..
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999985  788999999999 9999999999999999974  689999999999864

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.16  E-value=0.0012  Score=72.80  Aligned_cols=101  Identities=14%  Similarity=0.223  Sum_probs=73.0

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC--ccccc----cc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE--TPVSA----VS  295 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~--~~V~d----im  295 (517)
                      .+.+|+++|++...++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++......+  .+..|    ++
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~  238 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL  238 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence            4678999999765688999999999 99999999999999999865 78999999999987643211  11111    11


Q ss_pred             ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          296 IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       296 ~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..-  .|.......+-.+.+.+.+..++ ++|
T Consensus       239 vga--avg~~~~~~~r~~~l~~ag~d~i-~iD  267 (505)
T PLN02274        239 VGA--AIGTRESDKERLEHLVKAGVDVV-VLD  267 (505)
T ss_pred             EEE--EEcCCccHHHHHHHHHHcCCCEE-EEe
Confidence            111  23333344566777777888775 556

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.15  E-value=0.0009  Score=56.72  Aligned_cols=57  Identities=21%  Similarity=0.381  Sum_probs=49.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..++.++|.+  ++.++++++++. ++++.|.+.++..+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4789999985  678899999998 99999999999999999761378999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.13  E-value=0.00094  Score=56.69  Aligned_cols=57  Identities=18%  Similarity=0.401  Sum_probs=50.1

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|++.
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35679999974  678899999999 99999999999999999865 78999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.001  Score=56.65  Aligned_cols=57  Identities=18%  Similarity=0.339  Sum_probs=49.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.++.++|.+  ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            44578889974  678899999998 99999999999999999765 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.12  E-value=0.056  Score=58.23  Aligned_cols=41  Identities=12%  Similarity=0.108  Sum_probs=37.1

Q ss_pred             CCccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 TETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ~~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+.+++++|..  ++.+++.++++.++++.|.+++....||.+
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~  231 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYK  231 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEc
Confidence            35789999874  688999999999999999999999999998

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.001  Score=57.73  Aligned_cols=58  Identities=14%  Similarity=0.362  Sum_probs=50.6

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..+.++.++|.+  .+.++++++++. ++++.|.+.+...+||++++ ++++|+|+.+|++.
T Consensus        67 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          67 AINEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            345678899974  688999999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0012  Score=55.99  Aligned_cols=56  Identities=18%  Similarity=0.351  Sum_probs=48.7

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..++.++|.+  .+.++.+++++. ++++.|.+.+..++||++++ ++++|+|+.+|+++
T Consensus        57 ~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            3458899974  677899999999 99999999999999999765 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.08  E-value=0.0011  Score=59.42  Aligned_cols=56  Identities=21%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|++  ++..+++++++. ++++.|.+.++.++||+++  ++++|+|+.+|++.
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            46689999975  677899999999 9999999999999999975  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.08  E-value=0.0012  Score=55.69  Aligned_cols=56  Identities=25%  Similarity=0.450  Sum_probs=46.8

Q ss_pred             ccccccccccccceEEecC-CCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDV-NSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~-d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  .+..+.. ++++. ++++.|.+.++.++||++++ ++++|+|+.+|++.
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578899964  3445566 99998 99999999999999999865 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.07  E-value=0.0019  Score=55.01  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=47.6

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHH-cCCcEEEEEeCCCC-CEEEEEEhhhHh
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILA-RGHSRVPIYSGNPK-NIIGLLLVKSLL  281 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~-~g~Sr~PV~ddd~d-~iVGiV~~kDLl  281 (517)
                      +++++|+.  .++++.++.++. ++.+.|.+ +++.++||++++ + +++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~-~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDD-GGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECC-CCeEEEEEEHHHcC
Confidence            79999984  788999999999 99999999 799999999875 4 899999999974

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.07  E-value=0.0015  Score=45.86  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=26.9

Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++++.++++.|.+.+.+.+||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   30 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD   30 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence            56789999999999999999999999998

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.05  E-value=0.0014  Score=56.65  Aligned_cols=58  Identities=14%  Similarity=0.302  Sum_probs=50.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..+.++.++|.  .++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            35667889996  4678999999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0015  Score=56.57  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=45.7

Q ss_pred             cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..++|.  .++.++.+++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.
T Consensus        67 ~~~~~~--~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt~~di~~  119 (120)
T cd04641          67 RRSQDF--EGVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIISLSDILQ  119 (120)
T ss_pred             hcccCC--CCCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEEHHHhhc
Confidence            345565  3678999999999 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.04  E-value=0.001  Score=56.50  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=48.7

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.+  .+.++++++++. ++++.+.+++..++||++++ ++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899964  677899999998 99999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0012  Score=58.33  Aligned_cols=56  Identities=16%  Similarity=0.391  Sum_probs=49.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ...++.++|.+  ++..+++++++. ++++.|.+.+..++||+++  ++++|+++.+|++.
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            34479999974  678899999999 9999999999999999986  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.0014  Score=55.71  Aligned_cols=55  Identities=22%  Similarity=0.457  Sum_probs=48.5

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.  +++.++.+++++. ++++.|.+++..++||+++  ++++|+|+..|++.
T Consensus        56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            457888897  4788899999998 9999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.04  E-value=0.0016  Score=55.84  Aligned_cols=56  Identities=23%  Similarity=0.530  Sum_probs=48.1

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.+  ++.++.+++++. ++++.|.+++..++||++++ .++++|+|+..|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788874  688899999999 99999999999999999764 268999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.03  E-value=0.0016  Score=55.01  Aligned_cols=54  Identities=13%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.+  +..+++++.++. ++++.|.+++..++||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            357888974  577899999999 9999999999999999973  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.03  E-value=0.0025  Score=69.89  Aligned_cols=95  Identities=12%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCccccccc----ccCC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVS----IRRM  299 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim----~r~v  299 (517)
                      .+++++|++  +++++++++++. ++++.|.++++..+||++++ ++++|+|+.+||++.....  +..+..    ....
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehhe
Confidence            579999995  788999999999 99999999999999999865 7899999999999754322  222211    1111


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                        +.......+.+..|.+.+...+ |+|
T Consensus       220 --v~~~~~~~~ra~~Lv~aGVd~i-~~D  244 (475)
T TIGR01303       220 --VGINGDVGGKAKALLDAGVDVL-VID  244 (475)
T ss_pred             --eeeCccHHHHHHHHHHhCCCEE-EEe
Confidence              3334456788888888888774 667

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.03  E-value=0.0014  Score=67.75  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      +.+|+++|++  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.+
T Consensus       262 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            4568999985  688899999999 99999999999999999865 689999999999864

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.02  E-value=0.0017  Score=54.84  Aligned_cols=55  Identities=18%  Similarity=0.382  Sum_probs=48.3

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.+  ++.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            467788874  688999999999 99999999999999999764 78999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.00099  Score=57.41  Aligned_cols=57  Identities=11%  Similarity=0.351  Sum_probs=50.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.+.++.++|.+  ++.+++.++++. ++++.+.+.+.+++||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            456688899974  688999999999 9999999999999999985  78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.00  E-value=0.0017  Score=55.08  Aligned_cols=56  Identities=16%  Similarity=0.354  Sum_probs=49.3

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.++.++|.+  .+.++++++++. ++++.|.+++...+||++ + ++++|+|+.+|++.
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899974  678899999999 999999999999999998 3 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.99  E-value=0.0015  Score=55.49  Aligned_cols=57  Identities=12%  Similarity=0.303  Sum_probs=49.9

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      +.+++++|.+  ++..+++++++. ++++.+.+++...+||++++ ++++|+|+..|++..
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578999975  578899999998 99999999999999999865 789999999999853

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.99  E-value=0.0021  Score=70.82  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=70.8

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc---ccccccccC
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET---PVSAVSIRR  298 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~---~V~dim~r~  298 (517)
                      .+.+|+++|+|..++++++++.++. ++++.|.+++...+||++++ ++++|+|+.+|++......+.   .-..+...-
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vga  234 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVGA  234 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEEE
Confidence            3568999999767899999999999 99999999999999999875 789999999999976321110   001111111


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAV  325 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apV  325 (517)
                        .|.......+.+..+.+.+..++.|
T Consensus       235 --avg~~~~~~~~~~~l~~ag~d~i~i  259 (495)
T PTZ00314        235 --AISTRPEDIERAAALIEAGVDVLVV  259 (495)
T ss_pred             --EECCCHHHHHHHHHHHHCCCCEEEE
Confidence              2322223356667777777777644

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.98  E-value=0.0016  Score=54.78  Aligned_cols=55  Identities=27%  Similarity=0.561  Sum_probs=48.3

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.+  ++.++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            468888974  678899999998 99999999999999999865 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.98  E-value=0.0013  Score=56.43  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997643443334499998 99999999999999999765 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.96  E-value=0.0015  Score=56.09  Aligned_cols=57  Identities=18%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ....++.++|.+  .+.+++.++++. ++++.+.+++++.+||+++  ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999975  678899999999 9999999999999999975  78999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.95  E-value=0.0018  Score=55.06  Aligned_cols=56  Identities=21%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++..++||+++  ++++|+|+.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            45578899974  688999999998 9999999999999999975  78999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.95  E-value=0.0016  Score=55.17  Aligned_cols=55  Identities=16%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.  .++..+++++++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            46888996  3688999999999 99999999999999999765 78999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.94  E-value=0.0016  Score=56.13  Aligned_cols=57  Identities=18%  Similarity=0.409  Sum_probs=50.0

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ...++.++|.  .++..++.++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        65 ~~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMS--TPVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            4567889996  3678899999998 99999999999999999865 88999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.93  E-value=0.0046  Score=65.94  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=76.4

Q ss_pred             ccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----------Ccccccc---ccc
Q 010123          231 TPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----------ETPVSAV---SIR  297 (517)
Q Consensus       231 tPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----------~~~V~di---m~r  297 (517)
                      +++...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-++......          ..++.+.   +..
T Consensus       159 ~~~~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~  237 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS  237 (381)
T ss_pred             ccCCCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh
Confidence            3444447888888887 8888899999999999985557999999999998754321          1222222   123


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG  330 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG  330 (517)
                      .+..+.+++++.++++.|...+..-+||||++|
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            577899999999999999999999999999533

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.92  E-value=0.0021  Score=54.23  Aligned_cols=57  Identities=18%  Similarity=0.316  Sum_probs=49.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|.+  ++..+++++++. ++++.+.+.+...+||++++ ++++|+|+.+|++.
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            45678899974  688899999998 99999999999999999865 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.89  E-value=0.0015  Score=55.74  Aligned_cols=55  Identities=11%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|.+  .+.++++++++. ++++.|.+.+  .+||++++ ++++|+++.+|++.
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            46679999985  578899999998 9999998755  59999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.89  E-value=0.002  Score=53.92  Aligned_cols=54  Identities=17%  Similarity=0.345  Sum_probs=48.3

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL  281 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl  281 (517)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            4568899974  688999999999 9999999999999999985  7999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.89  E-value=0.0015  Score=57.86  Aligned_cols=57  Identities=18%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ....++.++|.+  ++.++++++++. ++++.|.+.+.+++||++ + ++++|+|+.+|++.
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            356789999974  688999999999 999999999999999998 4 89999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.88  E-value=0.0021  Score=54.51  Aligned_cols=56  Identities=21%  Similarity=0.452  Sum_probs=48.7

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.++.++|.+  ++.++.+++++. ++++.+.+++...+||+++  ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            45578899974  688899999999 9999999999999999986  38999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.84  E-value=0.0015  Score=61.02  Aligned_cols=39  Identities=13%  Similarity=0.196  Sum_probs=36.0

Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+.+.+|.+|+++|.+++++.++++.|++++...+||++
T Consensus        65 ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~  103 (187)
T COG3620          65 ITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE  103 (187)
T ss_pred             EeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence            345678999999999999999999999999999999998

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.84  E-value=0.0018  Score=55.01  Aligned_cols=55  Identities=15%  Similarity=0.300  Sum_probs=48.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+|+.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899974  677899999999 9999999999999999985  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.84  E-value=0.0021  Score=55.56  Aligned_cols=55  Identities=27%  Similarity=0.451  Sum_probs=48.6

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+++++|.  .+++.+++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMT--RDPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhc--CCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            45888896  4688999999999 99999999999999999765 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.81  E-value=0.0038  Score=56.34  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++++++++++.++++.|.+++.+.+||+|
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD   31 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD   31 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            457899999999999999999999999999

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.81  E-value=0.0029  Score=44.39  Aligned_cols=46  Identities=15%  Similarity=0.455  Sum_probs=40.1

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      +.++++++++. ++++.+.+++++.+||++++ ++++|+++.++++..
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            45678899998 99999999999999999865 789999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.76  E-value=0.0028  Score=53.66  Aligned_cols=55  Identities=22%  Similarity=0.431  Sum_probs=48.7

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|..  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|++.
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3568888863  688999999999 9999999999999999975  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.73  E-value=0.0062  Score=65.02  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=64.3

Q ss_pred             HHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-CCcccc
Q 010123          214 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-TETPVS  292 (517)
Q Consensus       214 iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-~~~~V~  292 (517)
                      .+..+-...-.+++++|.|...+  ...+.+ .  ++   .+++.+.+.|+++      |+++..+....... .+..+.
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~-~--~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  329 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG-W--CV---SDRRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE  329 (382)
T ss_pred             HhcccCcccceeHHHHhcccccc--cccCcc-h--hh---hhcccceeEeecc------ceecccchHhHhhcccccchh
Confidence            33444445667899999763332  222332 2  22   3378888888864      78887776543221 234566


Q ss_pred             cccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          293 AVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       293 dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      + +....++|++++++.+++..+.+.... ++|+|
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  362 (382)
T TIGR03415       330 S-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVE  362 (382)
T ss_pred             h-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEee
Confidence            6 577888999999999999998887766 55667

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.73  E-value=0.0048  Score=52.33  Aligned_cols=56  Identities=14%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.+++++|.+  ++.++..++++. ++++.+.+++...+||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3468888874  688899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.72  E-value=0.004  Score=54.47  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=44.7

Q ss_pred             cccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          228 EAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       228 dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.|.  .++.++++++++. ++++.|.+++..++||++++ ++++|+|+..|+++
T Consensus        75 ~~~~--~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKS--RPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccc--CCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            4554  4678899999999 99999999999999999865 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.70  E-value=0.0031  Score=55.19  Aligned_cols=58  Identities=19%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeC-CCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSG-NPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~dd-d~d~iVGiV~~kDLl~  282 (517)
                      .+.++.++|++  ++++++++.++. ++++.|.++++..+||+++ +.++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678999974  688999999998 9999999999999999853 3478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.67  E-value=0.0041  Score=52.29  Aligned_cols=45  Identities=27%  Similarity=0.439  Sum_probs=41.2

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            67899999998 99999999999999999865 78999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.65  E-value=0.0064  Score=51.38  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=46.9

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ++.++|.+  ++.+++.++++. ++++.|.+++...+||++++ ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47788863  677899999999 99999999999999999865 89999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.61  E-value=0.0042  Score=52.57  Aligned_cols=53  Identities=9%  Similarity=0.201  Sum_probs=45.4

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.++|.   .+.++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|++.
T Consensus        58 ~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeEHHHhhc
Confidence            4566664   467889999998 99999999999999999865 78999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.60  E-value=0.0048  Score=52.17  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=48.0

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .++.++|.  ..+..++++.++. ++++.|.+.+...+||++++ ++++|+|+.+|++.
T Consensus        55 ~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMT--KDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhc--CCceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            56788886  3678899999999 99999999999999999765 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.58  E-value=0.0048  Score=66.84  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.+++.++++++++.++++.|.+++...+||+|
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd  373 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT  373 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            4578999989999999999999999999999999999998

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.57  E-value=0.0076  Score=53.12  Aligned_cols=31  Identities=10%  Similarity=0.077  Sum_probs=28.8

Q ss_pred             cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++.++++++++.++++.|++++...+||+|
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd   32 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD   32 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            5678899999999999999999999999998

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.48  E-value=0.0068  Score=62.68  Aligned_cols=104  Identities=18%  Similarity=0.195  Sum_probs=74.1

Q ss_pred             HHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcc
Q 010123          211 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETP  290 (517)
Q Consensus       211 E~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~  290 (517)
                      -++.++++-...=.++++||.+ .+......+......+...+...+.+.+-+++. .++.+|+|+..++...       
T Consensus       261 V~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-------  331 (386)
T COG4175         261 VRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-------  331 (386)
T ss_pred             HHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-------
Confidence            4566777777788899999985 333322222222224666777777666666663 3679999998887644       


Q ss_pred             cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                         .+..++..|+.++++.+.+....+...+++ |+|
T Consensus       332 ---~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd  364 (386)
T COG4175         332 ---ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD  364 (386)
T ss_pred             ---cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence               246778889999999999999999988776 667

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.47  E-value=0.0055  Score=68.66  Aligned_cols=59  Identities=22%  Similarity=0.310  Sum_probs=51.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCC-CCEEEEEEhhhHhccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNP-KNIIGLLLVKSLLTVR  284 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~-d~iVGiV~~kDLl~~~  284 (517)
                      +.+++|+|++  ++.++++++++. ++++.|.+++.+++||+|++. ++++|+|+.+|+++..
T Consensus       511 ~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l  570 (574)
T PRK01862        511 DKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAY  570 (574)
T ss_pred             cchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHH
Confidence            4679999985  678899999999 999999999999999998653 4799999999998764

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.46  E-value=0.0038  Score=68.40  Aligned_cols=74  Identities=22%  Similarity=0.276  Sum_probs=60.7

Q ss_pred             CCCCChhHHHHHHHhhc---ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhH
Q 010123          204 GGELTHDETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL  280 (517)
Q Consensus       204 ~G~L~~eE~~iI~~vl~---L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDL  280 (517)
                      .|.++  ++.+..+++.   =...+|+++||  .++++++..+.+- |++-.|.++++.++||+++  |+++|+|+..|+
T Consensus       193 ~GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dI  265 (610)
T COG2905         193 LGIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDI  265 (610)
T ss_pred             cceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHH
Confidence            44444  3445555554   35678999999  5899999999998 9999999999999999986  899999999999


Q ss_pred             hccc
Q 010123          281 LTVR  284 (517)
Q Consensus       281 l~~~  284 (517)
                      +...
T Consensus       266 l~l~  269 (610)
T COG2905         266 LRLF  269 (610)
T ss_pred             HHhh
Confidence            8754

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.40  E-value=0.0072  Score=60.57  Aligned_cols=39  Identities=18%  Similarity=0.199  Sum_probs=35.7

Q ss_pred             cccccccccC-CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRR-MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~-v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+++++|.++ ++++++++++.++++.|.+.+...++|+|
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd  194 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD  194 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe
Confidence            4678888888 89999999999999999999999999999

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.37  E-value=0.0082  Score=51.25  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=43.6

Q ss_pred             ccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          229 AMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       229 IMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+|+.+|++.
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7864  677899999999 9999999999999999953  78999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.30  E-value=0.0068  Score=51.99  Aligned_cols=57  Identities=23%  Similarity=0.302  Sum_probs=46.9

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCC---cEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH---SRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~---Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      .+.+++++|.+  .+..+++++++. ++++.|.+++.   ...||++++ ++++|+|+.+|++.
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999975  688899999998 99999988875   345677665 89999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.30  E-value=0.0075  Score=54.37  Aligned_cols=56  Identities=11%  Similarity=0.342  Sum_probs=49.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ...++.++|.+  .+.+++.++++. ++++.+.+.+++++||+++  ++++|+|+.+|++.
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            46678899975  688999999998 9999999999999999975  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.08  E-value=0.013  Score=49.24  Aligned_cols=53  Identities=17%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      ++.++|.+  .+.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            46777864  577889999998 9999999999999999985  68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.03  E-value=0.011  Score=49.59  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=43.6

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++.++|.+  ++.++++++++. ++.+.|.+ . ...||++++ ++++|+|+.+|++.
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence            3568888964  677899999998 88888887 3 347888765 78999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=95.99  E-value=0.011  Score=64.43  Aligned_cols=60  Identities=23%  Similarity=0.424  Sum_probs=53.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .+.+++++|++ .+++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++...
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhcc
Confidence            35689999984 4788999999999 99999999999999999875 8999999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.94  E-value=0.027  Score=46.57  Aligned_cols=53  Identities=21%  Similarity=0.457  Sum_probs=46.3

Q ss_pred             cccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          226 AEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       226 V~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.++|..  ++.++..++++. ++++.+.+.+...+||++++ ++++|+++.+|++.
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5677763  678889999998 99999999999999999876 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=95.86  E-value=0.019  Score=59.17  Aligned_cols=86  Identities=12%  Similarity=0.173  Sum_probs=65.4

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC---Cc------cccccc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET---ET------PVSAVS  295 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~---~~------~V~dim  295 (517)
                      +++++|.|   ++++++++++. ++++.|++++....||+++. |.++|+|+..|++...-..   +.      .+..+ 
T Consensus       134 ~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-  207 (292)
T PRK15094        134 SMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-  207 (292)
T ss_pred             CHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeEHHHHHHHHhCCCccccccccccccEEe-
Confidence            46788864   45799999999 99999999999999999865 7899999999998754321   11      12111 


Q ss_pred             ccCCcccCCCCCHHHHHHHHH
Q 010123          296 IRRMPRVPADMPLYDILNEFQ  316 (517)
Q Consensus       296 ~r~v~~V~~~~~l~daL~~m~  316 (517)
                      -.....|+..+++.++.+.+.
T Consensus       208 ~~~~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        208 SRHTWTVRALASIEDFNEAFG  228 (292)
T ss_pred             CCCeEEEEeccCHHHHHHHhC
Confidence            223456999999999999873

>PRK11573 hypothetical protein; Provisional

Probab=95.42  E-value=1.6  Score=47.31  Aligned_cols=40  Identities=8%  Similarity=0.174  Sum_probs=35.7

Q ss_pred             Ccccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+++++|.  .++..++.++++.++++.+.+++....||.+
T Consensus       186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~  227 (413)
T PRK11573        186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYR  227 (413)
T ss_pred             CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEc
Confidence            567889885  4677899999999999999999999999987

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=94.77  E-value=1.3  Score=48.17  Aligned_cols=40  Identities=5%  Similarity=0.091  Sum_probs=34.9

Q ss_pred             Ccccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+++++|.  .++.+++.+.+..++.+.+.+.+....||.|
T Consensus       205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~  246 (429)
T COG1253         205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYD  246 (429)
T ss_pred             CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc
Confidence            567888885  4567799999999999999999999999998

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.53  E-value=0.078  Score=55.46  Aligned_cols=60  Identities=15%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ++.+...+||  ...+++.+.+++. .+.+.|.-.|+.-+||++++ .+++|+|+.+|++....
T Consensus       247 ~~t~ieKVMt--knp~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq  306 (432)
T COG4109         247 PSTTIEKVMT--KNPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CCccHHHHhc--cCCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHH
Confidence            5677889999  4788999999998 99999999999999999876 78999999999997654

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=94.50  E-value=0.037  Score=60.29  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .-.+..++++|.+  +++++.+++..+ ++.+.+.+++....||++++ ++++|+|+..|++...
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4467789999986  589999999998 99999999999999999876 8999999999998654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=92.60  E-value=0.26  Score=52.41  Aligned_cols=58  Identities=19%  Similarity=0.432  Sum_probs=50.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ...+.+.|.+  ++.++++++++. +++..+.++++. +||++++ ++++|+|+..+++....
T Consensus       301 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       301 AQGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALY  358 (363)
T ss_pred             CCchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3468888874  677899999999 999999999999 9999876 89999999999987653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=91.18  E-value=0.22  Score=53.03  Aligned_cols=101  Identities=11%  Similarity=0.125  Sum_probs=69.1

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCcccccccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSI  296 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~  296 (517)
                      +=..+.+.++||++.  ++.+.+.+++ ++-+.+.++.-.++||++++ |+++-++...||.+...-   ....-+++|-
T Consensus       167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~yPlask~~~kqll~  242 (503)
T KOG2550|consen  167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRDYPLASKDSTKQLLC  242 (503)
T ss_pred             hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcCCCccccCcccceee
Confidence            445677899999864  7888899998 99999999999999999876 999999999999875321   1112223332


Q ss_pred             cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          297 RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       297 r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ...+-..+++  ..-+..+.+.+...+ |+|
T Consensus       243 gAaiGTre~d--K~rl~ll~~aGvdvv-iLD  270 (503)
T KOG2550|consen  243 GAAIGTRDDD--KERLDLLVQAGVDVV-ILD  270 (503)
T ss_pred             eeccccccch--hHHHHHhhhcCCcEE-EEe
Confidence            2222222222  345566667776654 666

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.46  E-value=1.9  Score=43.86  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             eEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----------------CcccccccccC
Q 010123          236 TFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----------------ETPVSAVSIRR  298 (517)
Q Consensus       236 vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----------------~~~V~dim~r~  298 (517)
                      ++.|..|.  + |+++.     -+|+-|.++  |+++=+=+..+++..+.++                 ...+.+.|...
T Consensus       189 ivfVTHDi--d-EA~kL-----adri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         189 IVFVTHDI--D-EALKL-----ADRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEecCH--H-HHHhh-----hceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            55666655  4 77764     356778764  7888888877777654331                 12233433322


Q ss_pred             Cc----ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MP----RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~----~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+    .++......+++..+...+...+||+|
T Consensus       259 ~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd  291 (309)
T COG1125         259 EPADGEPLLEGFVDRDALSDFLARGRSVLPVVD  291 (309)
T ss_pred             ccccCCccccchhhHHHHHHHHhcCCceeEEEC
Confidence            21    244555566788899999999999999

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=89.19  E-value=0.82  Score=49.27  Aligned_cols=58  Identities=16%  Similarity=0.332  Sum_probs=48.7

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..++.++|.+  ++.++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3467788864  577899999999 999999987766 9999865 89999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	517
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		2e-05
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		4e-05

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 187 RAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 246
           R +L AL+    +++G+   +  D    + G  D+ ++   +   P     +L  N  LD
Sbjct: 34  RDELLALI----RDSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTLD 89
Query: 247 WEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV-RAETETPVSAVSIRRMPRVPAD 305
            E +  I+   HSR P+ S +  +I G+L  K LL   R++ E       +R+   VP  
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHIEGILXAKDLLPFXRSDAEAFSXDKVLRQAVVVPES 148
Query: 306 MPLYDILNEFQKGSSHMA 323
             +   L EF+    H A
Sbjct: 149 KRVDRXLKEFRSQRYHXA 166

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282
           E+T  +   P      LD++  L  + +  I+   HSR P+Y  +  NIIG+LL K LL 
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPL-PQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR 62
Query: 283 VRAETETPVSAVSIRRMPR----VPADMPLYDILNEFQKGSSHMA 323
              E      A+ IR + R    +P    L  +L EF+   +H+A
Sbjct: 63  YXLE-----PALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLA 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	7e-27
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	9e-26
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	8e-25
3ocm_A	173	Putative membrane protein; structural genomics, PS	3e-24
3oco_A	153	Hemolysin-like protein containing CBS domains; str	8e-23
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	2e-22
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	1e-20
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	2e-20
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	8e-20
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	3e-19
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  105 bits (265), Expect = 7e-27
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 5/148 (3%)

Query: 179 GHHDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238
           GH D    +  ++A++    QE    G + H+E  ++     L E+T    M P      
Sbjct: 1   GHLDDNVTQEDIQAML----QEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVF 56

Query: 239 LDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRR 298
           LD+N  LD   +  ++   HSR P+   N  +++G++  K LL+     E       ++ 
Sbjct: 57  LDLNLPLD-ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKN 115

Query: 299 MPRVPADMPLYDILNEFQKGSSHMAAVV 326
              VP  +   ++L  F+   S M  VV
Sbjct: 116 CNFVPNSLSGMELLEHFRTTGSQMVFVV 143

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  102 bits (256), Expect = 9e-26
 Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 187 RAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 246
              +  L+    ++A +      D    +   LD ++    +AM        L  N  ++
Sbjct: 5   AEDVLNLL----RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 247 WEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPR----V 302
                 ++   HSR P+   +   ++G+L  K LL      E       ++ + R    V
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQ----FHLKSILRPAVFV 115

Query: 303 PADMPLYDILNEFQKGSSHMAAVV 326
           P    L  +L EF++  +HMA V+
Sbjct: 116 PEGKSLTALLKEFREQRNHMAIVI 139

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 99.0 bits (248), Expect = 8e-25
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 203 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVP 262
             G +   E  ++    +  EK   E M P      +  +   + + +  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 263 IYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHM 322
           +   N  +I+G + ++ L   +           +R +  +  ++ +   L   +K    +
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDIIYISENLTIDKALERIRKEKLQL 120

Query: 323 AAVV 326
           A VV
Sbjct: 121 AIVV 124

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 98.4 bits (246), Expect = 3e-24
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 200 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHS 259
                     +E  ++SG L L E++    MTP      ++++         ++ A  HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 260 RVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGS 319
             P+  G+   ++G+   K L+              +R    V   + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR-LRDPIIVHESIGILRLMDTLKRSR 129

Query: 320 SHMAAVV 326
             +  V 
Sbjct: 130 GQLVLVA 136

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 93.7 bits (234), Expect = 8e-23
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYS 265
               ++   +  A ++ +K A + M    S   +DV+  +  +A+   L   +SR P+ +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 266 GNPK-NIIGLLLVKSLLT-VRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMA 323
            N K  IIG      ++   R + +  +S + +R +  VP +M + D++ E       MA
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI-MRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 324 AVV 326
            V+
Sbjct: 120 IVI 122

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKS 279
           +  +    + MTP    F +D    ++ E + K      SR  +YS    NIIG +    
Sbjct: 2   NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLE 60

Query: 280 LLTVRAETETPVSAVSIRRMPR-VPADMPLYDILNEFQKGSSHMAAVV 326
           L  ++          ++ R  + V  +  L  + ++       +A VV
Sbjct: 61  LFKMQQSGSGQKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVV 108

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 86.7 bits (216), Expect = 1e-20
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL 280
             E+T  + M P      LD++  L  + +  I+   HSR P+Y  +  NIIG+LL K L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 281 LTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVV 326
           L    E    + ++ +R    +P    L  +L EF+   +H+A V+
Sbjct: 61  LRYMLEPALDIRSL-VRPAVFIPEVKRLNVLLREFRASRNHLAIVI 105

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 85.9 bits (214), Expect = 2e-20
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282
           + +  + M P      +D+N       + ++    H R+ +Y  +  + I +L V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 283 VRAETETPVSAVSIRRMPR----VPADMPLYDILNEFQKGSSHMAAVV 326
           +  E +   +   + R       VP   PL   L +FQ+    +  VV
Sbjct: 60  LMTEKKE-FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 106

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282
           +    + M P     S+        E +  ++   HSR P+   +  +++G+LL K LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL- 59

Query: 283 VRAETETPVSAVSIRRMPR----VPADMPLYDILNEFQKGSSHMAAVV 326
                +    +  ++++ R    VP    L  +L EF+   +HMA V+
Sbjct: 60  -PLILKADGDSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVI 106

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 82.9 bits (206), Expect = 3e-19
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT 282
           ++   + M P     +L  N  LD E +  I+   HSR P+ S +  +I G+L+ K LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 283 VRAETETPVSAVSIRRMPR-VPADMPLYDILNEFQKGSSHMAAVV 326
                    S   + R    VP    +  +L EF+    HMA V+
Sbjct: 61  FMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVI 105

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK--------NI 271
            L E T  + M   +    + V + L+  A+  +   G++ +P+   + +         I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 272 IGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILN 313
           +  +     +      +  V  V +  +PR+  + P+     
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFG 110

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/97 (13%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 248 EAIGKILARGHSRVPIYSGNPKNIIGLL----LVKSLLTVRAETETPVSAVSIRRMPRVP 303
           EAI  +      ++P+   +  +++G++    L+  ++++  +   P      +R+ R+ 
Sbjct: 406 EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKRVIRLN 465

Query: 304 ADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISL 340
               L  +    +      + ++  K  + K +  +L
Sbjct: 466 ESEILGKLARVLEVDP---SVLILGKNPAGKVELKAL 499

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.95
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.93
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.93
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.91
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.9
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.85
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.85
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.84
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.84
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.84
4esy_A	170	CBS domain containing membrane protein; structural	99.82
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.8
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.78
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.75
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.75
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.73
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.73
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.73
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.72
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.72
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.72
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.71
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.71
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.71
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.7
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.69
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.69
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.69
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.69
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.68
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.68
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.68
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.67
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.67
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.67
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.66
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.66
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.65
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.64
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.64
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.6
3ddj_A	296	CBS domain-containing protein; structural genomics	99.59
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.58
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.58
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.57
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.56
3ddj_A	296	CBS domain-containing protein; structural genomics	99.55
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.54
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.53
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.51
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.49
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.49
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.47
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.46
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.45
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.43
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.41
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.26
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.08
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.06
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.67
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.51
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.51
4esy_A	170	CBS domain containing membrane protein; structural	98.22
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.08
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.07
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.03
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.0
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.0
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.94
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.93
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.93
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.92
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.92
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.91
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.91
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.91
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.88
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.88
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.87
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.86
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.85
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.84
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.84
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.83
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.82
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.81
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.81
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.8
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.8
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.79
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.78
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.78
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.77
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.76
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.75
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.75
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.74
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.74
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.73
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.73
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.7
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.67
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.65
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.62
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.56
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.37
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.26
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.26
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.07
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.03
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.93
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.87
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.74
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.56
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.48
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.45
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.33

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.95  E-value=1.2e-27  Score=222.14  Aligned_cols=140  Identities=24%  Similarity=0.438  Sum_probs=93.7

Q ss_pred             CccccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEE
Q 010123          182 DALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRV  261 (517)
Q Consensus       182 ~~~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~  261 (517)
                      .+.+|++||+.+++    ++.+.|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus         4 ~~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~   78 (172)
T 3lhh_A            4 DDNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRF   78 (172)
T ss_dssp             -------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEE
T ss_pred             cccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEE
Confidence            46789999999998    45567999999999999999999999999999988999999999999 99999999999999


Q ss_pred             EEEeCCCCCEEEEEEhhhHhcccccC-CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          262 PIYSGNPKNIIGLLLVKSLLTVRAET-ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       262 PV~ddd~d~iVGiV~~kDLl~~~~~~-~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ||++++.++++|+|+.+|++...... +.+++++| +++++|++++++.++++.|.+++.+++||+|
T Consensus        79 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd  144 (172)
T 3lhh_A           79 PVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD  144 (172)
T ss_dssp             EEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC
T ss_pred             EEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence            99986547999999999999765433 57899998 9999999999999999999999999999999

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.93  E-value=6.7e-26  Score=206.94  Aligned_cols=138  Identities=21%  Similarity=0.322  Sum_probs=126.2

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI  263 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV  263 (517)
                      .+|++||+.+++.    +.+.|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            4799999999984    4567999999999999999999999999999988999999999999 9999999999999999


Q ss_pred             EeCCCCCEEEEEEhhhHhccccc-CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          264 YSGNPKNIIGLLLVKSLLTVRAE-TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       264 ~ddd~d~iVGiV~~kDLl~~~~~-~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++.++++|+|+.+|++....+ .+.+++++| +++++|++++++.++++.|.+++.+++||+|
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd  140 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVID  140 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEEC
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEEC
Confidence            98764599999999999987543 467899987 6689999999999999999999999999999

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.93  E-value=2.4e-25  Score=208.02  Aligned_cols=124  Identities=16%  Similarity=0.274  Sum_probs=110.0

Q ss_pred             cccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhH
Q 010123          201 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL  280 (517)
Q Consensus       201 ~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDL  280 (517)
                      +.++|.|+++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|+
T Consensus        13 ~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl   91 (173)
T 3ocm_A           13 MPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL   91 (173)
T ss_dssp             -----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred             HHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence            3457999999999999999999999999999988999999999999 999999999999999998655799999999999


Q ss_pred             hccccc-CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          281 LTVRAE-TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       281 l~~~~~-~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +..... ...+++  |++++++|++++++.++++.|.+++.+++||+|
T Consensus        92 ~~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd  137 (173)
T 3ocm_A           92 VADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD  137 (173)
T ss_dssp             HHHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC
T ss_pred             HHHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe
Confidence            876432 356777  568999999999999999999999999999999

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.91  E-value=2.7e-24  Score=193.69  Aligned_cols=123  Identities=16%  Similarity=0.361  Sum_probs=99.6

Q ss_pred             cCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc
Q 010123          203 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT  282 (517)
Q Consensus       203 ~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~  282 (517)
                      +.|.++++|++++++++++.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            45899999999999999999999999999988999999999999 99999999999999999865479999999999987


Q ss_pred             ccccC-CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          283 VRAET-ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       283 ~~~~~-~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ...+. +.+++++| +++++|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  125 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD  125 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe
Confidence            64433 67899998 9999999999999999999999999999999

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.90  E-value=3.3e-24  Score=194.65  Aligned_cols=120  Identities=21%  Similarity=0.362  Sum_probs=105.3

Q ss_pred             CCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEE-eCCCCCEEEEEEhhhHhccc
Q 010123          206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIY-SGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       206 ~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~-ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+|++...
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence            36788999999999999999999999988999999999999 99999999999999999 54447999999999998764


Q ss_pred             cc-CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          285 AE-TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       285 ~~-~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .. ...+++++| +++++|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  123 (153)
T 3oco_A           81 RIDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID  123 (153)
T ss_dssp             HHHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC
T ss_pred             hcCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence            32 267899998 9999999999999999999999999999999

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.86  E-value=6.1e-22  Score=176.41  Aligned_cols=103  Identities=25%  Similarity=0.422  Sum_probs=92.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc---cCCcccccccccCC
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA---ETETPVSAVSIRRM  299 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~---~~~~~V~dim~r~v  299 (517)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++....   ....+++++| +++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~~   79 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RPA   79 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CCC
Confidence            678999999988999999999999 99999999999999999865479999999999997643   2356899987 568


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++|++++++.++++.|.+++.+++||+|
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  107 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRANHNHMAIVID  107 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            9999999999999999999999999999

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.86  E-value=1.9e-21  Score=171.44  Aligned_cols=105  Identities=30%  Similarity=0.492  Sum_probs=95.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP  300 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~  300 (517)
                      ..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++......+.+++++| ++++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999988999999999999 999999999999999998654799999999999987655677899986 6788


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|++++++.++++.|.+++.+.+||+|
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd  106 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVID  106 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            999999999999999999999999999

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.85  E-value=2.1e-21  Score=171.79  Aligned_cols=103  Identities=19%  Similarity=0.361  Sum_probs=93.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC----CcccccccccC
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET----ETPVSAVSIRR  298 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~----~~~V~dim~r~  298 (517)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++....++    ..+++++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988999999999999 9999999999999999976558999999999998765543    24688887 88


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  107 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVD  107 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEc
Confidence            99999999999999999999999999999

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.85  E-value=2.8e-21  Score=177.52  Aligned_cols=110  Identities=18%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             HHHHhh-cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc------
Q 010123          214 IISGAL-DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE------  286 (517)
Q Consensus       214 iI~~vl-~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~------  286 (517)
                      ||.+.+ +|-..+++++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....      
T Consensus         4 mi~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~   81 (156)
T 3k6e_A            4 MIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQE   81 (156)
T ss_dssp             HHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHH
T ss_pred             hHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccc
Confidence            444444 355678999999999999999999999 99999999999999999765 899999999999764322      


Q ss_pred             --CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 --TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 --~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                        .+.+++++|.+++++|++++++.++++.|.+++  ++||||
T Consensus        82 ~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd  122 (156)
T 3k6e_A           82 IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD  122 (156)
T ss_dssp             HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC
T ss_pred             cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEe
Confidence              257899999999999999999999999998775  599999

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.84  E-value=2.5e-20  Score=179.02  Aligned_cols=127  Identities=8%  Similarity=0.072  Sum_probs=113.6

Q ss_pred             ccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHc---CCcEE
Q 010123          185 FRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILAR---GHSRV  261 (517)
Q Consensus       185 ~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~---g~Sr~  261 (517)
                      +..++.+.++.          .++++|++++++++.|.+.+|+++|++  +++++++++++. ++++.|.++   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            44555556654          368999999999999999999999996  899999999999 999999987   78999


Q ss_pred             EEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          262 PIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       262 PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ||++++ ++++|+|+.+|++....  +.+++++|.+++++|++++++.++++.|.+++.+.+||||
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~~--~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD  154 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHEP--HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID  154 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSCT--TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCCC--cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence            999865 89999999999987543  6789999989999999999999999999999999999999

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.84  E-value=2.4e-21  Score=170.72  Aligned_cols=106  Identities=23%  Similarity=0.341  Sum_probs=92.5

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--CCccccccccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIR  297 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r  297 (517)
                      +|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++.....  .+.+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            478899999999988999999999999 999999999999999998655799999999999876533  257899997 7


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  109 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVD  109 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEc
Confidence            789999999999999999999999999999

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.84  E-value=1.3e-20  Score=165.42  Aligned_cols=104  Identities=29%  Similarity=0.466  Sum_probs=92.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc--cCCcccccccccCC
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA--ETETPVSAVSIRRM  299 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~--~~~~~V~dim~r~v  299 (517)
                      ++.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++....  ..+.+++++| +++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCC
Confidence            3678999999977899999999999 99999999999999999865479999999999987643  2357899997 668


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVID  106 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            8999999999999999999999999999

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=4.2e-20  Score=170.55  Aligned_cols=111  Identities=15%  Similarity=0.259  Sum_probs=96.7

Q ss_pred             HHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----
Q 010123          211 ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----  286 (517)
Q Consensus       211 E~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----  286 (517)
                      +++.+.+.  +.+.+|+|+|++  +++++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++.....    
T Consensus         7 ~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~   80 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIY   80 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHH
T ss_pred             HHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhcccc
Confidence            34444444  468899999995  899999999999 99999999999999999875 899999999999864221    


Q ss_pred             ----------------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ----------------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ----------------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                            ...+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd  143 (170)
T 4esy_A           81 EASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ  143 (170)
T ss_dssp             HHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred             chhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence                                  13578999999999999999999999999999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.80  E-value=3.9e-19  Score=177.68  Aligned_cols=117  Identities=14%  Similarity=0.147  Sum_probs=108.1

Q ss_pred             CCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHc-----CCcEEEEEeCCCCCEEEEEEhhh
Q 010123          205 GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILAR-----GHSRVPIYSGNPKNIIGLLLVKS  279 (517)
Q Consensus       205 G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~-----g~Sr~PV~ddd~d~iVGiV~~kD  279 (517)
                      +.++.+++..+.+++.+.+.+|+++|++  +++++++++++. ++++.|.++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            4678899999999999999999999996  899999999999 999999987     78999999865 89999999999


Q ss_pred             HhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          280 LLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       280 Ll~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++...  .+.+++++|.+++++|++++++.++++.|++++.+.+||||
T Consensus       192 ll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  237 (278)
T 2yvy_A          192 LIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  237 (278)
T ss_dssp             HHHSC--TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhcCC--CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            98753  36789999989999999999999999999999999999999

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.78  E-value=1.1e-18  Score=187.80  Aligned_cols=134  Identities=13%  Similarity=0.129  Sum_probs=120.4

Q ss_pred             cccHHHHHHHHHhhhhhcccC---------CCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHH
Q 010123          184 LFRRAQLKALVSIHSQEAGKG---------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKIL  254 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~---------G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~  254 (517)
                      .++.+|+..+++..    .+.         +.+++++++.+++++++.+.+|+++|++  +++++++++++. ++++.++
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46788888888732    234         7899999999999999999999999996  899999999999 9999999


Q ss_pred             Hc-----CCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          255 AR-----GHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       255 ~~-----g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++     +++++||++++ ++++|+|+.+|++...  .+.+++++|.+++++|++++++.++++.|++++.+.+||||
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD  257 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  257 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc
Confidence            86     47999999875 8999999999998753  36789999989999999999999999999999999999999

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.75  E-value=1.2e-17  Score=168.09  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=107.6

Q ss_pred             CCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHc-----CCcEEEEEeCCCCCEEEEEEhhhH
Q 010123          206 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILAR-----GHSRVPIYSGNPKNIIGLLLVKSL  280 (517)
Q Consensus       206 ~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~-----g~Sr~PV~ddd~d~iVGiV~~kDL  280 (517)
                      .++.+++..+.+++.+.+.+|+++|++  +++++++++++. ++++.|.++     +++++||++++ ++++|+|+.+|+
T Consensus       119 ~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dl  194 (286)
T 2oux_A          119 LLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDL  194 (286)
T ss_dssp             TSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHH
T ss_pred             cCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHH
Confidence            578889999999999999999999995  799999999999 999999987     89999999865 899999999999


Q ss_pred             hcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          281 LTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       281 l~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +...  .+.+++++|.+++++|++++++.++++.|.+++.+.+||||
T Consensus       195 l~~~--~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd  239 (286)
T 2oux_A          195 IVND--DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD  239 (286)
T ss_dssp             TTSC--TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HcCC--CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            8764  36789999999999999999999999999999999999999

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.75  E-value=8.4e-18  Score=150.05  Aligned_cols=104  Identities=18%  Similarity=0.174  Sum_probs=92.8

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc----------------
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA----------------  285 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~----------------  285 (517)
                      ...+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4678999999877899999999999 99999999999999999865 79999999999985421                


Q ss_pred             -cCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          286 -ETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       286 -~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       ....++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  123 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD  123 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence             124689999988899999999999999999999999999999

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.73  E-value=9.1e-18  Score=145.07  Aligned_cols=100  Identities=13%  Similarity=0.231  Sum_probs=92.1

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVP  303 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~  303 (517)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++........+++++|.+++++++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            478999996  688999999999 99999999999999999865 89999999999998766656789999989999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          304 ADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       304 ~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd  100 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVD  100 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEC
Confidence            999999999999999999999999

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.73  E-value=8.5e-18  Score=150.90  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=94.2

Q ss_pred             hhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CC
Q 010123          218 ALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TE  288 (517)
Q Consensus       218 vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~  288 (517)
                      .-.|.+.+|+++|+|..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....         ..
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~   86 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEE   86 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGG
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhc
Confidence            34467889999999877899999999999 99999999999999999865 899999999999865421         35


Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+++++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        87 ~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           87 MKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             CBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             CCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence            68999999999999999999999999999986  99998

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.73  E-value=1.9e-17  Score=149.56  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=91.6

Q ss_pred             HHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------
Q 010123          216 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------  286 (517)
Q Consensus       216 ~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------  286 (517)
                      ++...+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....         
T Consensus         3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            4556678899999999866889999999999 99999999999999999865 899999999999875432         


Q ss_pred             CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ...+++++|.++++++++++++.++++.|.+++.  +||+|
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd  119 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN  119 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence            3568999999999999999999999999999986  99998

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.72  E-value=1.8e-17  Score=149.16  Aligned_cols=102  Identities=19%  Similarity=0.198  Sum_probs=93.3

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRM  299 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v  299 (517)
                      .+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....    .+.++.++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999877899999999999 99999999999999999865 899999999999875433    3568999998999


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++|++++++.++++.|.+++.+.+||+|
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVAD  133 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999999999999999999

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.72  E-value=2.1e-17  Score=152.07  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc------------------
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR------------------  284 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~------------------  284 (517)
                      ..+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999877899999999999 99999999999999999865 8999999999998531                  


Q ss_pred             -------------ccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          285 -------------AETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       285 -------------~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                   .....+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  136 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD  136 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                         1125689999998899999999999999999999999999999

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.72  E-value=4.8e-17  Score=143.41  Aligned_cols=100  Identities=12%  Similarity=0.180  Sum_probs=90.4

Q ss_pred             ccccccccc-cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc-ccc----cCCcccccccccC
Q 010123          225 TAEEAMTPI-ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT-VRA----ETETPVSAVSIRR  298 (517)
Q Consensus       225 tV~dIMtPr-~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~-~~~----~~~~~V~dim~r~  298 (517)
                      +|+++|+|+ .+++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++. ...    ..+.+++++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999976 6899999999999 999999999999999998 4 89999999999985 222    1357899999899


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  112 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLD  112 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999998

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.71  E-value=5.5e-17  Score=142.43  Aligned_cols=102  Identities=15%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCccccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIR  297 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r  297 (517)
                      |.+.+|+++|++  +++++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.....   .+.+++++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999996  688999999999 999999999999999998 4 899999999999865432   25689999988


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  105 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            999999999999999999999999999999

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=4.5e-17  Score=149.29  Aligned_cols=110  Identities=12%  Similarity=0.176  Sum_probs=98.0

Q ss_pred             HHhhcccccccccccccc-cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCc
Q 010123          216 SGALDLTEKTAEEAMTPI-ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETET  289 (517)
Q Consensus       216 ~~vl~L~~~tV~dIMtPr-~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~  289 (517)
                      .....+...+|+|+|+|+ .+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....     ....
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccC
Confidence            345567889999999974 5788999999999 99999999999999999865 89999999999986532     2357


Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        94 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  131 (165)
T 3fhm_A           94 SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE  131 (165)
T ss_dssp             BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            89999999999999999999999999999999999999

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.71  E-value=6.3e-17  Score=141.78  Aligned_cols=101  Identities=13%  Similarity=0.188  Sum_probs=91.7

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCC---cccccccccC
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETE---TPVSAVSIRR  298 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~---~~V~dim~r~  298 (517)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|++....+..   .+++++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46799999995  688999999999 9999999999999999986  89999999999997654332   5699999999


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd  106 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLAD  106 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEEC
Confidence            99999999999999999999999999998

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.70  E-value=1.3e-16  Score=141.01  Aligned_cols=104  Identities=13%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             hcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhc-ccc---cCCcccccc
Q 010123          219 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLT-VRA---ETETPVSAV  294 (517)
Q Consensus       219 l~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~-~~~---~~~~~V~di  294 (517)
                      +.|...+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++. ...   ....++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999984  788999999999 99999999999999999865 89999999999973 322   135689999


Q ss_pred             cccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          295 SIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       295 m~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      |.++++++++++++.++++.|.+++.+.+ |+|
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd  109 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE  109 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC
Confidence            98999999999999999999999999999 999

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.69  E-value=1.1e-16  Score=142.41  Aligned_cols=99  Identities=11%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCC--CEEEEEEhhhHhccccc---CCcccccccccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK--NIIGLLLVKSLLTVRAE---TETPVSAVSIRR  298 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d--~iVGiV~~kDLl~~~~~---~~~~V~dim~r~  298 (517)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ +  +++|+|+.+|++.....   .+.++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            689999995  789999999999 99999999999999999875 5  89999999999875422   257899999999


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++ ++.++++.|.+++.+.+||+|
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd  108 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVN  108 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEc
Confidence            9999999 999999999999999999999

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.69  E-value=1.7e-16  Score=143.64  Aligned_cols=101  Identities=11%  Similarity=0.167  Sum_probs=91.0

Q ss_pred             cccccccccc----cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCcccccc
Q 010123          224 KTAEEAMTPI----ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSAV  294 (517)
Q Consensus       224 ~tV~dIMtPr----~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~di  294 (517)
                      ++|+|+|+|+    ++++++++++++. ++++.|.+++++++||.+ + ++++|+|+.+|++.....     .+.+++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999987    6789999999999 999999999999999954 3 899999999999875321     35789999


Q ss_pred             cccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          295 SIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       295 m~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      |.++++++++++++.++++.|.+++.+.+||+|
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  116 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD  116 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            999999999999999999999999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.69  E-value=7.6e-17  Score=163.26  Aligned_cols=123  Identities=11%  Similarity=0.163  Sum_probs=105.2

Q ss_pred             CCChhHHHHHHHhhcc-cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          206 ELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       206 ~L~~eE~~iI~~vl~L-~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .++++|+++++++++| .+.+|+|+|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            4567899999999995 4599999999999999999999999 9999999999999999997668999999999998643


Q ss_pred             c--------cC------Ccccc-------cccccCC--cccCCCCCHHHHHHHHHhCCCcEEEEEeeC
Q 010123          285 A--------ET------ETPVS-------AVSIRRM--PRVPADMPLYDILNEFQKGSSHMAAVVKVK  329 (517)
Q Consensus       285 ~--------~~------~~~V~-------dim~r~v--~~V~~~~~l~daL~~m~~~~~~~apVVDEy  329 (517)
                      .        ..      ..++.       ++|.+++  +++++++++.++++.|.+++.+.+||+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~  149 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD  149 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC
Confidence            1        11      22333       2366777  899999999999999999999999999953

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.69  E-value=8.2e-17  Score=146.25  Aligned_cols=104  Identities=16%  Similarity=0.262  Sum_probs=92.5

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CCcc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TETP  290 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~~~  290 (517)
                      .+...+|+++|+++.+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            577899999999866899999999999 99999999999999999865 799999999999875432         3568


Q ss_pred             cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++|.+++++|++++++.++++.|.+++.  +||+|
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd  122 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN  122 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe
Confidence            999998899999999999999999999876  99998

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.68  E-value=1.8e-16  Score=139.71  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=91.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhH-hccccc---CCcccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL-LTVRAE---TETPVSAVSI  296 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDL-l~~~~~---~~~~V~dim~  296 (517)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+ +.....   .+.+++++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            568899999985  788899999999 99999999999999999865 899999999999 764322   3568999998


Q ss_pred             cCCcccCCCCCHHHHHHHHHhCC-----CcEEEEEe
Q 010123          297 RRMPRVPADMPLYDILNEFQKGS-----SHMAAVVK  327 (517)
Q Consensus       297 r~v~~V~~~~~l~daL~~m~~~~-----~~~apVVD  327 (517)
                      ++++++++++++.++++.|.+++     .+.+||+|
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd  116 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD  116 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC
Confidence            89999999999999999999999     99999999

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.68  E-value=3e-16  Score=142.93  Aligned_cols=102  Identities=17%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc----cCCcccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA----ETETPVSAVSI  296 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~----~~~~~V~dim~  296 (517)
                      +...+|+++|++   .+++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....    ....+++++|.
T Consensus        14 l~~~~v~~im~~---~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI---PVVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC---CCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC---CEEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            567899999984   35899999999 99999999999999999865 89999999999987531    13578999998


Q ss_pred             c--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          297 R--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       297 r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +  ++++|++++++.++++.|.+++.+.+||+|
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  121 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIK  121 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence            7  889999999999999999999999999999

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.68  E-value=5.1e-17  Score=164.49  Aligned_cols=123  Identities=11%  Similarity=0.281  Sum_probs=99.7

Q ss_pred             ccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123          202 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL  281 (517)
Q Consensus       202 ~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl  281 (517)
                      ++.|.+++.+++.+++.  |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+|+.+|++
T Consensus        15 ~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll   91 (330)
T 2v8q_E           15 EHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI   91 (330)
T ss_dssp             --------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHH
T ss_pred             hHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHH
Confidence            34567777777778887  57889999999999999999999999 9999999999999999997667899999999998


Q ss_pred             ccccc----C--------Cc-------ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          282 TVRAE----T--------ET-------PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       282 ~~~~~----~--------~~-------~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .....    .        ..       .++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        92 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd  156 (330)
T 2v8q_E           92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID  156 (330)
T ss_dssp             HHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC
T ss_pred             HHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe
Confidence            64211    0        11       12456788999999999999999999999999999999

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=3.1e-16  Score=142.28  Aligned_cols=102  Identities=20%  Similarity=0.280  Sum_probs=91.5

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcE-EEEEeCCCCCEEEEEEhhhHhccc--------------
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSR-VPIYSGNPKNIIGLLLVKSLLTVR--------------  284 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr-~PV~ddd~d~iVGiV~~kDLl~~~--------------  284 (517)
                      .+...+|+++|++  +++++++++++. ++++.|.++++++ +||++++  +++|+|+.+|++...              
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4678899999985  789999999999 9999999999999 9999864  899999999998642              


Q ss_pred             -----ccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          285 -----AETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       285 -----~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                           .....+++++|.+ +++|++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD  133 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc
Confidence                 1235789999888 99999999999999999999999999999

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.67  E-value=2.5e-16  Score=136.28  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRM  299 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v  299 (517)
                      ++|+++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++....+    .+.+++++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            478999985  788999999999 999999999999999998 4 899999999999865422    2568999998899


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  103 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEE  103 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEE
Confidence            9999999999999999999999999999

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.67  E-value=3.1e-16  Score=138.76  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             ccccccccc---ccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCccc
Q 010123          220 DLTEKTAEE---AMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPV  291 (517)
Q Consensus       220 ~L~~~tV~d---IMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V  291 (517)
                      ++-+.++++   +|+  .+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     .+.++
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v   79 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV   79 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBH
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccH
Confidence            355678888   787  4788999999999 99999999999999999865 899999999999875432     25689


Q ss_pred             cccccc------CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          292 SAVSIR------RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       292 ~dim~r------~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++|.+      +++++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  121 (144)
T 2nyc_A           80 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  121 (144)
T ss_dssp             HHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence            998876      688999999999999999999999999999

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=142.22  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=91.8

Q ss_pred             HHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeC-CCCCEEEEEEhhhHhccccc-------
Q 010123          215 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSG-NPKNIIGLLLVKSLLTVRAE-------  286 (517)
Q Consensus       215 I~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~dd-d~d~iVGiV~~kDLl~~~~~-------  286 (517)
                      ..+.+.+...+|+++|++  +++++++++++. ++++.|.+++++++||+++ +.++++|+|+.+|++.....       
T Consensus         4 ~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~   80 (164)
T 2pfi_A            4 LGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP   80 (164)
T ss_dssp             ------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------
T ss_pred             ccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCC
Confidence            345567788999999996  788899999999 9999999999999999986 24899999999999865422       


Q ss_pred             -CCcccccccccC------CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 -TETPVSAVSIRR------MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 -~~~~V~dim~r~------v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       ...++.++|.++      ++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  128 (164)
T 2pfi_A           81 GHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS  128 (164)
T ss_dssp             CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             cccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE
Confidence             135788888766      78899999999999999999999999999

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=2.6e-16  Score=145.54  Aligned_cols=106  Identities=13%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             ccccccccccccccc--eEEe--cCCCChhHHHHHHHHHcCCcEEEEEe-CCCCCEEEEEEhhhHhcccc----------
Q 010123          221 LTEKTAEEAMTPIES--TFSL--DVNSKLDWEAIGKILARGHSRVPIYS-GNPKNIIGLLLVKSLLTVRA----------  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~--vv~v--~~d~tl~~eal~~l~~~g~Sr~PV~d-dd~d~iVGiV~~kDLl~~~~----------  285 (517)
                      +...+|+++|++..+  ++++  ++++++. ++++.|.+++++++||++ ++.++++|+|+.+|++....          
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            367899999998543  7778  9999999 999999999999999994 23489999999999986532          


Q ss_pred             ------------------cCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          286 ------------------ETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       286 ------------------~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                        ....+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  146 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  146 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE
Confidence                              234679999989999999999999999999999999999998

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.66  E-value=1.8e-16  Score=139.07  Aligned_cols=103  Identities=16%  Similarity=0.239  Sum_probs=89.7

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh-ccccc----CCccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL-TVRAE----TETPVSAVS  295 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl-~~~~~----~~~~V~dim  295 (517)
                      +.-.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++ .....    .+.+++++|
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            345689999985  788899999999 99999999999999999765 8999999999998 34322    246899999


Q ss_pred             ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          296 IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       296 ~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  112 (133)
T 1y5h_A           81 RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS  112 (133)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            89999999999999999999999999999999

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.66  E-value=3.7e-16  Score=142.59  Aligned_cols=102  Identities=25%  Similarity=0.253  Sum_probs=91.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc------------cCCc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA------------ETET  289 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~------------~~~~  289 (517)
                      ...+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999985  788999999999 99999999999999999865 89999999999986532            2357


Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  116 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  116 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE
Confidence            89999988999999999999999999999999999999

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.65  E-value=5.3e-16  Score=144.78  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=90.8

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRR  298 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~  298 (517)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....     ....+++++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            789999984  788999999999 99999999999999999865 89999999999987533     2356899999889


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|++++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVD  113 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            99999999999999999999999999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.64  E-value=1.6e-16  Score=160.17  Aligned_cols=125  Identities=11%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             cCCCCChhHHHHHHHhhcc-cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123          203 KGGELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL  281 (517)
Q Consensus       203 ~~G~L~~eE~~iI~~vl~L-~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl  281 (517)
                      +.+.++++|+++++++++| .+.+|.|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~   86 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFI   86 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHH
Confidence            4567889999999999998 9999999999999999999999999 9999999999999999997767999999999998


Q ss_pred             cccc----cC----------Cccccc------ccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          282 TVRA----ET----------ETPVSA------VSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       282 ~~~~----~~----------~~~V~d------im~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      ....    ..          ...+++      +|.++++++++++++.++++.|.+++.+.+||+|+
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~  153 (323)
T 3t4n_C           87 NVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQ  153 (323)
T ss_dssp             HHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEec
Confidence            6421    00          112333      34678899999999999999999999999999995

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.60  E-value=2.2e-15  Score=147.60  Aligned_cols=133  Identities=15%  Similarity=0.216  Sum_probs=105.5

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI  263 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV  263 (517)
                      .+|..||...+...    ...+.+...   ...++++..+.+|+++|++  +++++++++++. ++++.|.+++++++||
T Consensus        51 ivt~~di~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGGG----SKYNLIREK---HERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTTS----GGGHHHHTT---STTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhccc----chhhhhhhc---cccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            57889998877421    111111111   1223344447899999996  788999999999 9999999999999999


Q ss_pred             EeCCCCCEEEEEEhhhHhccccc---CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          264 YSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       264 ~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++ ++++|+++.+|++.....   ...+++++|.++++++++++++.++++.|.+++.+.+||++
T Consensus       121 vd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~  186 (280)
T 3kh5_A          121 VNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS  186 (280)
T ss_dssp             ECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             EcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            9865 899999999999875432   23479999989999999999999999999999999999996

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.59  E-value=5.6e-15  Score=146.98  Aligned_cols=129  Identities=15%  Similarity=0.209  Sum_probs=107.3

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPI  263 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV  263 (517)
                      .+|..||...+..    ...       ......+.+++.+.+|+++|++  +++++++++++. ++++.|.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~-------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCK-------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----ccc-------ccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            4688888776641    100       0234556667778999999996  788999999999 9999999999999999


Q ss_pred             EeCCCCCEEEEEEhhhHhccccc--CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          264 YSGNPKNIIGLLLVKSLLTVRAE--TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       264 ~ddd~d~iVGiV~~kDLl~~~~~--~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++ ++++|+++.+|++.....  ...+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus       130 vd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  194 (296)
T 3ddj_A          130 VDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID  194 (296)
T ss_dssp             ECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             EcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            9765 899999999999875432  24689999999999999999999999999999999999999

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.59  E-value=6.6e-15  Score=158.62  Aligned_cols=131  Identities=13%  Similarity=0.177  Sum_probs=110.5

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCC
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH  258 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~  258 (517)
                      .++.+||...+...    +..|.|.     +++++++++++++     +++|++  +++++++++++. ++++.|.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            57888999888732    2223344     5778888888654     789996  788999999999 99999999999


Q ss_pred             cEEEEEeC-CCCCEEEEEEhhhHhcccccCCccccccccc-CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          259 SRVPIYSG-NPKNIIGLLLVKSLLTVRAETETPVSAVSIR-RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       259 Sr~PV~dd-d~d~iVGiV~~kDLl~~~~~~~~~V~dim~r-~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++||+++ +.++++|+|+.+|++... +.+.+++++|.+ ++++|++++++.++++.|.+++.+.+||||
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd  191 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD  191 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            99999982 348999999999998643 346789999887 899999999999999999999999999999

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=1.4e-14  Score=139.17  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=90.3

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRV  302 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V  302 (517)
                      .-+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....  +.+++++|.++++++
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFV   85 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEE
Confidence            4578999984  788999999999 99999999999999999865 89999999999987654  568999999999999


Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          303 PADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       303 ~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++.++++.|.+++.+.+||+|
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd  110 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVD  110 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEc
Confidence            9999999999999999999999999

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.58  E-value=4.7e-16  Score=172.77  Aligned_cols=104  Identities=18%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHH-HcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-------------
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKIL-ARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-------------  287 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~-~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-------------  287 (517)
                      .+.+|+|+|+|++++.++++++++. |+.+.|. +++++++||+|++ ++++|+|+.+|++......             
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999999999999999999 9999999 7999999999875 8999999999998653211             


Q ss_pred             --------------------------------------CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 --------------------------------------ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 --------------------------------------~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                                            ..+++++|.+++++|++++++.++++.|++++.+++||+|
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve  606 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE  606 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE
Confidence                                                  0137789999999999999999999999999999999996

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.57  E-value=1.2e-14  Score=146.50  Aligned_cols=104  Identities=16%  Similarity=0.179  Sum_probs=92.2

Q ss_pred             cccccccccc---cccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----Cccc
Q 010123          220 DLTEKTAEEA---MTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETPV  291 (517)
Q Consensus       220 ~L~~~tV~dI---MtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~V  291 (517)
                      .+.+.+|+++   |+  .+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++......     +.++
T Consensus       183 ~~~~~~v~~~~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v  258 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSV  258 (323)
T ss_dssp             GGCCSBGGGTTCSBC--TTCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBH
T ss_pred             hhhhCcHHHcCCCCC--CCcEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCH
Confidence            3556789999   76  4788999999999 99999999999999999865 8999999999998754332     4689


Q ss_pred             cccccc------CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          292 SAVSIR------RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       292 ~dim~r------~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|.+      +++++++++++.++++.|.+++.+.+||+|
T Consensus       259 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  300 (323)
T 3t4n_C          259 GEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  300 (323)
T ss_dssp             HHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC
Confidence            999887      789999999999999999999999999999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.56  E-value=1.6e-14  Score=156.80  Aligned_cols=132  Identities=13%  Similarity=0.188  Sum_probs=107.7

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG  257 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g  257 (517)
                      ..+|++++...+...+.    -|.|.     +++.++++.++.     ++++|++  +++++++++++. ++++.|.+++
T Consensus        76 dtvTe~~lAia~a~~Gg----iGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQGG----LGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHHTC----EEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhcCC----ceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            35688998777753221    13332     345567777764     5577874  788999999999 9999999999


Q ss_pred             CcEEEEEeC--CCCCEEEEEEhhhHhcccccCCccccccccc-CCcccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          258 HSRVPIYSG--NPKNIIGLLLVKSLLTVRAETETPVSAVSIR-RMPRVPADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       258 ~Sr~PV~dd--d~d~iVGiV~~kDLl~~~~~~~~~V~dim~r-~v~~V~~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      ++++||+++  + ++++|+|+.+|++.. ...+.+++++|.+ ++++|++++++.++++.|++++.+.+||||+
T Consensus       144 ~s~~pVvd~g~~-~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe  215 (511)
T 3usb_A          144 ISGVPVVNNLDE-RKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN  215 (511)
T ss_dssp             CSEEEEESCTTT-CBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred             CcEEEEEecCCC-CEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999986  4 899999999999763 3346789999987 9999999999999999999999999999993

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.55  E-value=1.2e-14  Score=144.51  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=92.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------CCcc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----------TETP  290 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----------~~~~  290 (517)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....+          .+.+
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~  228 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKV  228 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCB
T ss_pred             cccccHHHhhcC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcC
Confidence            346689999984  788999999999 99999999999999999865 899999999999876431          2568


Q ss_pred             cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus       229 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  265 (296)
T 3ddj_A          229 VKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN  265 (296)
T ss_dssp             HHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence            9999999999999999999999999999999999999

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.55  E-value=3.5e-14  Score=139.11  Aligned_cols=100  Identities=10%  Similarity=0.220  Sum_probs=87.4

Q ss_pred             cccc-ccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----------------
Q 010123          225 TAEE-AMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----------------  286 (517)
Q Consensus       225 tV~d-IMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----------------  286 (517)
                      ++++ +|++  +++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.....                 
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            4445 4553  899999999999 999999999999999998645899999999999865421                 


Q ss_pred             -CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 -TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 -~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       .+.+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd  122 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVN  122 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEEC
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEc
Confidence             14589999999999999999999999999999999999999

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.54  E-value=2.1e-15  Score=163.04  Aligned_cols=142  Identities=13%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCC-----ChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGEL-----THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG  257 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L-----~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g  257 (517)
                      ..+|++++...+..++    .-|.|     .++++++++++     ++++++|+  .+++++++++++. ++++.|.+++
T Consensus        52 dtVTe~~ma~a~a~~G----GiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQEG----GIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHcC----CcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHH-HHHHHHHHcC
Confidence            4578999988886322    22334     55678889888     56789999  4889999999999 9999999999


Q ss_pred             CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccc-c-CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccc
Q 010123          258 HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSI-R-RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKS  335 (517)
Q Consensus       258 ~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~-r-~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~  335 (517)
                      |+++||++++ ++++|+|+.+||+.. ...+.+++++|. + +++++++++++.++++.|++++.+.+|||||+|...|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999999875 899999999999743 334678999987 4 59999999999999999999999999999999999999


Q ss_pred             ccc
Q 010123          336 QSI  338 (517)
Q Consensus       336 ~~~  338 (517)
                      +..
T Consensus       198 IT~  200 (496)
T 4fxs_A          198 ITA  200 (496)
T ss_dssp             ECC
T ss_pred             ehH
Confidence            833

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.53  E-value=1.9e-14  Score=140.19  Aligned_cols=101  Identities=16%  Similarity=0.222  Sum_probs=89.0

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------------
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----------------  286 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----------------  286 (517)
                      ..+|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999984  788999999999 99999999999999999865 899999999999864311                


Q ss_pred             --------------------------------------------------------------------------------
Q 010123          287 --------------------------------------------------------------------------------  286 (517)
Q Consensus       287 --------------------------------------------------------------------------------  286 (517)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------CCcccccccc-cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ---------------------TETPVSAVSI-RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ---------------------~~~~V~dim~-r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd  224 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVID  224 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEEC
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEc
Confidence                                 0235778888 8999999999999999999999999999999

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.53  E-value=1.9e-14  Score=156.55  Aligned_cols=103  Identities=13%  Similarity=0.163  Sum_probs=89.6

Q ss_pred             ccccccccccccccceEEecCC-CChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc----cCCccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVN-SKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA----ETETPVSAVS  295 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d-~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~----~~~~~V~dim  295 (517)
                      |.+.+|+|+|++  ++++++++ +++. ++++.|.+++++++||++++.++++|+|+.+||+....    ..+.+|+++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            557899999994  78899999 9999 99999999999999999833489999999999986532    2357899999


Q ss_pred             ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          296 IRRMPRVPADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       296 ~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      .+++++|++++++.++++.|.+++  ++||||+
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~  488 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILGK  488 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEeC
Confidence            999999999999999999997765  5799993

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.51  E-value=6.9e-14  Score=137.51  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh------cccc----------
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL------TVRA----------  285 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl------~~~~----------  285 (517)
                      .+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++      ....          
T Consensus       124 ~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~  199 (282)
T 2yzq_A          124 KGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE  199 (282)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             ccCcHHHHhCC--CCEEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhh
Confidence            46789999974  788999999999 99999999999999999865 7899999999998      4321          


Q ss_pred             ------------------cCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          286 ------------------ETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       286 ------------------~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                        ....+++++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  259 (282)
T 2yzq_A          200 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  259 (282)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC
Confidence                              024679999999999999999999999999999999999999

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.49  E-value=1e-13  Score=137.29  Aligned_cols=60  Identities=8%  Similarity=0.082  Sum_probs=53.4

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLT  282 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~  282 (517)
                      ...+++|+|+|++  +++++.+++++. ++.+.|.+++++++||++++ .++++|+|+.+||+.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            3567899999995  899999999999 99999999999999999864 257999999999975

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.49  E-value=3.4e-14  Score=139.74  Aligned_cols=99  Identities=15%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVP  303 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~  303 (517)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....  +.+++++|.+++++++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            478999994  788999999999 99999999999999999864 89999999999986643  5689999888899999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEee
Q 010123          304 ADMPLYDILNEFQKGSSHMAAVVKV  328 (517)
Q Consensus       304 ~~~~l~daL~~m~~~~~~~apVVDE  328 (517)
                      +++++.++++.|.+++.+.+||+|+
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~   99 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDS   99 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcC
Confidence            9999999999999999999999993

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.47  E-value=7.1e-15  Score=159.24  Aligned_cols=144  Identities=10%  Similarity=0.076  Sum_probs=19.8

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCC-hhHHHHHHHhhcccccccccc-cccccceEEecCCCChhHHHHHHHHHcCCcEE
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELT-HDETTIISGALDLTEKTAEEA-MTPIESTFSLDVNSKLDWEAIGKILARGHSRV  261 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~-~eE~~iI~~vl~L~~~tV~dI-MtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~  261 (517)
                      .++++++...+...+..+--...++ +++++++.++..      .++ |++  +++++++++++. ++++.|.+++++++
T Consensus        61 ~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~  131 (503)
T 1me8_A           61 SVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV  131 (503)
T ss_dssp             TTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHT------TTC---------------------------------
T ss_pred             hhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence            4677888877763211000001122 456677766543      456 996  889999999999 99999999999999


Q ss_pred             EEEeCC--CCCEEEEEEhhhHhcccccCCcccccccccC--CcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          262 PIYSGN--PKNIIGLLLVKSLLTVRAETETPVSAVSIRR--MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       262 PV~ddd--~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~--v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      ||++++  .++++|+|+.+|++......+.+++++|.++  +++|++++++.++++.|++++.+.+||||++|...|++
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiI  210 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV  210 (503)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence            999864  3789999999999853223467899998876  99999999999999999999999999999887777777

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.46  E-value=3e-13  Score=136.79  Aligned_cols=102  Identities=13%  Similarity=0.189  Sum_probs=89.4

Q ss_pred             ccccccc---ccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCccccc
Q 010123          222 TEKTAEE---AMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSA  293 (517)
Q Consensus       222 ~~~tV~d---IMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~d  293 (517)
                      ...++++   +|+  .+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....     .+.++.+
T Consensus       180 ~~~~v~~l~~~m~--~~~~~v~~~~~~~-~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~  255 (334)
T 2qrd_G          180 LRVPLNQMTIGTW--SNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGE  255 (334)
T ss_dssp             CCCBGGGSSCSBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHH
T ss_pred             hhCcHHHhCCccc--CCceEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHH
Confidence            4578899   487  4788999999999 99999999999999999865 799999999999875432     2467889


Q ss_pred             cccc------CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          294 VSIR------RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       294 im~r------~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|.+      ++++|++++++.++++.|.+++.+.+||+|
T Consensus       256 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  295 (334)
T 2qrd_G          256 ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  295 (334)
T ss_dssp             HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence            9874      889999999999999999999999999999

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.45  E-value=1.2e-14  Score=156.73  Aligned_cols=136  Identities=13%  Similarity=0.210  Sum_probs=23.0

Q ss_pred             cccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCC
Q 010123          184 LFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGH  258 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~  258 (517)
                      .++.+|+...+...    +..|.+.     +++++++++++++.     ++|+  .+++++++++++. ++++.|.++++
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~~-----~~m~--~~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRAE-----RLIV--EDVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcchh-----hccc--cCceEECCCCCHH-HHHHHHHHcCC
Confidence            46778988888632    2223343     56788999998764     4788  4899999999999 99999999999


Q ss_pred             cEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          259 SRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       259 Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      +++||+++  ++++|+|+.+|++.   +.+.+++++|.++++++++++++.++++.|++++.+.+||||++|...|++
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGii  197 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI  197 (486)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEE
Confidence            99999986  89999999999986   346789999988999999999999999999999999999999999999988

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.43  E-value=1.8e-14  Score=155.64  Aligned_cols=140  Identities=14%  Similarity=0.190  Sum_probs=23.2

Q ss_pred             ccccHHHHHHHHHhhhhhcccCCCCC-----hhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcC
Q 010123          183 ALFRRAQLKALVSIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARG  257 (517)
Q Consensus       183 ~~~s~eEL~~lv~~~~~e~~~~G~L~-----~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g  257 (517)
                      ..+|++++...+...+    .-|.|.     +++++++.++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            3578899988886322    123333     4557777776     457899984  788999999999 9999999999


Q ss_pred             CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccc-c-CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccc
Q 010123          258 HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSI-R-RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKS  335 (517)
Q Consensus       258 ~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~-r-~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~  335 (517)
                      ++++||++ + ++++|+|+.+|+... ...+.+++++|. + +++++++++++.++++.|++++.+.+||||++|...|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGi  195 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGL  195 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            99999998 3 899999999999643 334678999987 4 69999999999999999999999999999999999998


Q ss_pred             cc
Q 010123          336 QS  337 (517)
Q Consensus       336 ~~  337 (517)
                      +.
T Consensus       196 IT  197 (490)
T 4avf_A          196 VT  197 (490)
T ss_dssp             --
T ss_pred             Ee
Confidence            83

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.41  E-value=9.4e-13  Score=133.06  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=87.6

Q ss_pred             ccccccc--cccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----Cccccccc
Q 010123          223 EKTAEEA--MTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETPVSAVS  295 (517)
Q Consensus       223 ~~tV~dI--MtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~V~dim  295 (517)
                      ..+++++  |+ ..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++......     +.++.++|
T Consensus       189 ~~~v~~~~v~~-~~~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~  265 (330)
T 2v8q_E          189 SKSLEELQIGT-YANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL  265 (330)
T ss_dssp             GSBHHHHTCSB-CSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             cCCHHHhcccC-cCCceEECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHH
Confidence            3456666  54 24788999999999 99999999999999999865 8999999999998765432     46788887


Q ss_pred             ------ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          296 ------IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       296 ------~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                            .+++++|++++++.++++.|.+++.+.+||+|
T Consensus       266 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  303 (330)
T 2v8q_E          266 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  303 (330)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence                  47899999999999999999999999999999

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.26  E-value=8.2e-13  Score=142.49  Aligned_cols=120  Identities=15%  Similarity=0.182  Sum_probs=7.3

Q ss_pred             CChhH-HHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          207 LTHDE-TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       207 L~~eE-~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ++.++ ++.+.+++     +++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.. .
T Consensus        82 ~~~e~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~  151 (494)
T 1vrd_A           82 LTPDEQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-K  151 (494)
T ss_dssp             SCHHHHHHHHHHHH-----TC-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-c
Confidence            44433 44555554     46789985  789999999999 99999999999999999865 799999999999863 2


Q ss_pred             cCCccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          286 ETETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       286 ~~~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      +.+.+++++|.+  ++++|++++++.++++.|.+++.+.+||||+.|...|++
T Consensus       152 ~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI  204 (494)
T 1vrd_A          152 NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI  204 (494)
T ss_dssp             -----------------------------------------------------
T ss_pred             CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE
Confidence            345789999987  899999999999999999999999999999655555544

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.08  E-value=1.6e-11  Score=131.99  Aligned_cols=120  Identities=12%  Similarity=0.206  Sum_probs=8.6

Q ss_pred             hHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccccC
Q 010123          210 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRAET  287 (517)
Q Consensus       210 eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~~~  287 (517)
                      ++.++++.+-.+.     ..|.  .+++++.++.++. ++.+++.+++||.+||+++.  .++++|||+-+|+...  +.
T Consensus       129 ~Qa~~V~~VKr~e-----~g~i--~dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d~  198 (556)
T 4af0_A          129 EQAAMVRRVKKYE-----NGFI--TDPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--DA  198 (556)
T ss_dssp             HHHHHHHHHHHCC-----C-------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcc-----cCcc--CCCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--cc
Confidence            4567777775544     4565  4788999999999 99999999999999999852  3689999999998754  44


Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCccccccc
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSIS  339 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~~~~  339 (517)
                      +++|+++|..+++++++++++.++.+.|++++...+||||+.|...|++...
T Consensus       199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~k  250 (556)
T 4af0_A          199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARS  250 (556)
T ss_dssp             ----------------------------------------------------
T ss_pred             ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEec
Confidence            7899999999999999999999999999999999999999999999998443

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.06  E-value=3e-12  Score=138.88  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC--CCCEEEEEEhhhHhcccc-cCCccccccccc--C
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN--PKNIIGLLLVKSLLTVRA-ETETPVSAVSIR--R  298 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd--~d~iVGiV~~kDLl~~~~-~~~~~V~dim~r--~  298 (517)
                      ++++++|++  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+..... ..+.+++++|.+  +
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~  184 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIE  184 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBC
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCC
Confidence            378899984  688999999999 99999999999999999863  378999999999976421 235789999987  8


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                      +++|++++++.++++.|.+++.+.+||||+.|...|++
T Consensus       185 ~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI  222 (514)
T 1jcn_A          185 LVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAII  222 (514)
T ss_dssp             CCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC---
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEE
Confidence            99999999999999999999999999999999999998

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.67  E-value=4.7e-08  Score=77.86  Aligned_cols=65  Identities=11%  Similarity=0.247  Sum_probs=55.2

Q ss_pred             ceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-c----CCcccccccccCCccc
Q 010123          235 STFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-E----TETPVSAVSIRRMPRV  302 (517)
Q Consensus       235 ~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-~----~~~~V~dim~r~v~~V  302 (517)
                      +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|++.... .    .+.+++++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367899999999 9999999999999999985  78999999999975321 1    2468999999988765

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.51  E-value=8.5e-08  Score=91.61  Aligned_cols=103  Identities=11%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc-c
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP-R  301 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~-~  301 (517)
                      +.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++...... ..+.+.+.+-.+ .
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            4569999996  788999999999 99999999999999999865 8999999999998765421 222333322111 1


Q ss_pred             cCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123          302 VPADMPLYDILNEFQKGSSHMAAVVKVKG  330 (517)
Q Consensus       302 V~~~~~l~daL~~m~~~~~~~apVVDEyG  330 (517)
                      .....++.++.+.|.+++.+.++|++..|
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            23445699999999999999999987544

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.22  E-value=8e-07  Score=81.17  Aligned_cols=40  Identities=18%  Similarity=0.206  Sum_probs=38.6

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+|+++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd   56 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVD   56 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEc
Confidence            5789999999999999999999999999999999999999

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.08  E-value=4.2e-06  Score=74.85  Aligned_cols=61  Identities=18%  Similarity=0.299  Sum_probs=54.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE  286 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~  286 (517)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.....
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHT
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            367899999996  788999999999 999999999999999998 4 899999999999986543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.07  E-value=7.4e-06  Score=79.13  Aligned_cols=40  Identities=10%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd   45 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD   45 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEEC
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            4689999999999999999999999999999999999999

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.03  E-value=8.6e-06  Score=64.63  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|.+++++.+|++.|.+++...+||+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d   30 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME   30 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            56899999999999999999999999998

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.00  E-value=7.6e-06  Score=73.66  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=56.4

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCC---CEEEEEEhhhHhcccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPK---NIIGLLLVKSLLTVRA  285 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d---~iVGiV~~kDLl~~~~  285 (517)
                      ...+.+|+++|+++.+++++++++++. ++++.|.+++++++||++++ +   +++|+|+.+|++....
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDT-DKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEEC-SSSEEEEEEEEHHHHHHHHH
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CcceeEEEEEEHHHHHHHHH
Confidence            346789999999766889999999999 99999999999999999865 5   8999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.00  E-value=9.5e-06  Score=69.02  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+++++|++  ++.++++++++. ++++.|.+++++++||++++ |+++|+|+.+|++....
T Consensus        61 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           61 KKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHC
T ss_pred             ccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHhh
Confidence            4489999985  678899999999 99999999999999999865 89999999999987643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.93  E-value=1.6e-05  Score=70.49  Aligned_cols=40  Identities=13%  Similarity=0.113  Sum_probs=37.8

Q ss_pred             Cccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd   63 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR   63 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEES
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc
Confidence            5689999987  899999999999999999999999999998

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.93  E-value=1.7e-05  Score=69.03  Aligned_cols=40  Identities=8%  Similarity=0.125  Sum_probs=37.6

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   45 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN   45 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            4578999999999999999999999999999999999999

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.92  E-value=9.2e-06  Score=70.31  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      +.+++++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....
T Consensus        66 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           66 ETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIISIRDITRAID  124 (133)
T ss_dssp             TCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHH
Confidence            5789999985  678899999999 99999999999999999865 89999999999987643

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.92  E-value=1.3e-05  Score=69.25  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=38.3

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   43 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD   43 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE
Confidence            5689999999999999999999999999999999999999

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.91  E-value=1.7e-05  Score=70.41  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             ccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd   68 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD   68 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC
Confidence            479999988  899999999999999999999999999999

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.91  E-value=1.8e-05  Score=68.72  Aligned_cols=60  Identities=20%  Similarity=0.360  Sum_probs=53.9

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++....
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHHH
Confidence            467899999985  788999999999 999999999999999998 4 89999999999987643

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.91  E-value=2e-05  Score=71.02  Aligned_cols=40  Identities=13%  Similarity=0.050  Sum_probs=37.5

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd   43 (160)
T 2o16_A            4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   43 (160)
T ss_dssp             CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            4578999989999999999999999999999999999999

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.88  E-value=1e-05  Score=71.18  Aligned_cols=61  Identities=16%  Similarity=0.381  Sum_probs=53.2

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHHH
Confidence            456789999996  677899999999 99999999999999999865 89999999999997654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.87  E-value=2.1e-05  Score=67.01  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      .+.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++....
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  121 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3467899999985  688999999999 9999999999999999986  89999999999987643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.86  E-value=2e-05  Score=69.04  Aligned_cols=60  Identities=10%  Similarity=0.165  Sum_probs=52.6

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|+|   +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++....
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHTTC-
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHHh
Confidence            356789999974   78899999999 99999999999999999865 89999999999997643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.85  E-value=3.1e-05  Score=67.23  Aligned_cols=40  Identities=10%  Similarity=0.090  Sum_probs=37.5

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   46 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID   46 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEEC
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence            4678999988999999999999999999999999999998

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.84  E-value=3.3e-05  Score=71.20  Aligned_cols=61  Identities=10%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            467789999985  678999999999 99999999999999999865 89999999999987543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.84  E-value=2.7e-05  Score=68.26  Aligned_cols=39  Identities=15%  Similarity=0.221  Sum_probs=37.0

Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   43 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTA   43 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            578899999999999999999999999999999999999

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.83  E-value=4.5e-05  Score=69.76  Aligned_cols=59  Identities=8%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      .+.+|+++| +  +++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++....
T Consensus       105 ~~~~v~~im-~--~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          105 ERLELVDLV-K--NCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             CCCCGGGGC-B--CCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             CcccHHHHh-c--CCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            367899999 3  678999999999 99999999999999999865 89999999999997643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.82  E-value=2.2e-05  Score=69.47  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=36.7

Q ss_pred             Ccccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.  ++++++++++++.++++.|.+++.+.+||+|
T Consensus        14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd   55 (150)
T 3lqn_A           14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD   55 (150)
T ss_dssp             HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEEC
Confidence            357899987  5699999999999999999999999999999

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.81  E-value=2.6e-05  Score=67.57  Aligned_cols=58  Identities=12%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .+.+++++|++   ++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~-g~~~Giit~~Dil~~l  124 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDEH-GGISGLVTMEDVLEQI  124 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHH
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            46789999974   67899999999 99999999999999999865 8999999999998754

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.81  E-value=2.3e-05  Score=70.26  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ...+.+++++|++   ++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++....
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHH
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHHH
Confidence            3467889999995   77899999999 99999999999999999855 89999999999987643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.80  E-value=3.4e-05  Score=69.75  Aligned_cols=61  Identities=16%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||+++  |+++|+|+.+|++....
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            3457899999984  788999999999 9999999999999999986  89999999999997654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.80  E-value=3.6e-05  Score=68.74  Aligned_cols=58  Identities=12%  Similarity=0.105  Sum_probs=52.2

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      +.+|+++| +  ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++....
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHHH
T ss_pred             CCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHHh
Confidence            67899999 3  688999999999 99999999999999999865 89999999999997643

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.79  E-value=2e-05  Score=71.48  Aligned_cols=61  Identities=21%  Similarity=0.393  Sum_probs=54.3

Q ss_pred             cccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          220 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       220 ~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ...+.+|+++|++  +++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++...
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            4567889999995  678899999999 99999999999999999865 8999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.78  E-value=3.4e-05  Score=68.63  Aligned_cols=40  Identities=18%  Similarity=0.139  Sum_probs=37.1

Q ss_pred             Cccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd   51 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD   51 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEEC
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEc
Confidence            4678999876  899999999999999999999999999999

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.78  E-value=3.7e-05  Score=68.63  Aligned_cols=40  Identities=13%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd   51 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE   51 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe
Confidence            5689999999999999999999999999999999999998

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.77  E-value=5.3e-05  Score=65.97  Aligned_cols=40  Identities=13%  Similarity=0.405  Sum_probs=36.0

Q ss_pred             Cccccc---ccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSA---VSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~d---im~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.++++   +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         7 ~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   49 (144)
T 2nyc_A            7 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   49 (144)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc
Confidence            346677   7778999999999999999999999999999999

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.75  E-value=2.4e-05  Score=67.61  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++...
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            356789999985  778899999999 9999999999999999986  7999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.75  E-value=3.2e-05  Score=66.78  Aligned_cols=58  Identities=7%  Similarity=0.181  Sum_probs=51.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .+.+++++|++   +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++...
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECTT-SCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEEHHHHHHHH
Confidence            56789999964   56899999999 99999999999999999865 8999999999998753

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.74  E-value=3.2e-05  Score=69.26  Aligned_cols=40  Identities=20%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             Cccccccccc--CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIR--RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r--~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd   54 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD   54 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEEC
Confidence            4678999877  899999999999999999999999999999

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.74  E-value=4.9e-05  Score=65.81  Aligned_cols=58  Identities=12%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .+.+++++|+|   +.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++...
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt~~dil~~l  127 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVTLEDIFEHL  127 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEEHHHHHHHH
Confidence            36789999963   67899999999 99999999999999999865 8999999999998753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.73  E-value=4.8e-05  Score=68.93  Aligned_cols=38  Identities=5%  Similarity=-0.081  Sum_probs=34.9

Q ss_pred             ccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++++|.  .++++|++++++.+|++.|.+++...+||+|
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd   55 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVT   55 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEEC
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEc
Confidence            5778885  5789999999999999999999999999999

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.73  E-value=4.1e-05  Score=66.62  Aligned_cols=58  Identities=16%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ...+++++|.   ++.++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++...
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit~~Dil~~l  125 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEI  125 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEEHHHHHHHH
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEeeHHHHHHHH
Confidence            3467899995   467899999999 99999999999999999865 8999999999998764

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.70  E-value=5.4e-05  Score=74.59  Aligned_cols=40  Identities=13%  Similarity=0.255  Sum_probs=38.3

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.+++++|.+++++.++.+.|.+++.+.+||||
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd   51 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD   51 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            5679999999999999999999999999999999999998

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.67  E-value=9.1e-05  Score=80.22  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP  300 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~  300 (517)
                      -.+.+|+++|++ .++++++++.++. ++++.|.+++..++||+|++ ++++|+|+.+|++...... ..+++.+.+-.+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999996 5788999999999 99999999999999999876 8999999999999865432 233444333222


Q ss_pred             --ccCCCCCHHHHHHHHHhCCCcEEEEEeeCCCCcccc
Q 010123          301 --RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQ  336 (517)
Q Consensus       301 --~V~~~~~l~daL~~m~~~~~~~apVVDEyG~~~G~~  336 (517)
                        .+.......+.++.+.+.+...+.|-...|...++.
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~  285 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVI  285 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHH
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEecccccchhhhh
Confidence              244444567778888899999887766555544443

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.67  E-value=4.2e-05  Score=68.73  Aligned_cols=55  Identities=7%  Similarity=0.143  Sum_probs=49.9

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHh
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLL  281 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl  281 (517)
                      .+.+++++|+|   ++++++++++. ++++.|.+++..++||++++ |+++|+|+.+|++
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt~~Dil  155 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVTFEDII  155 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEEHHHHC
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEEHHHhc
Confidence            46789999974   77899999999 99999999999999999865 8999999999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.65  E-value=4.9e-05  Score=72.20  Aligned_cols=61  Identities=13%  Similarity=0.194  Sum_probs=54.3

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++...+||++++ |+++|+|+..|++....
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVR  173 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            356789999984  688999999999 99999999999999999865 89999999999987654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.62  E-value=2.4e-05  Score=84.50  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=19.7

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC--
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM--  299 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v--  299 (517)
                      .+.+|+++|+|..+++++++++++. ++++.|.++++.++||+|++ ++++|+|+.+|++....... ...+.+.+-.  
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4568999999865699999999999 99999999999999999876 89999999999997654321 1222211111  


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAV  325 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apV  325 (517)
                      ..++. ....+.++.|.+.+.+.++|
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cccCc-hhHHHHHHHHHhhhccceEE
Confidence            12444 66777789999989887544

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.61  E-value=7.7e-05  Score=68.01  Aligned_cols=40  Identities=20%  Similarity=0.117  Sum_probs=36.1

Q ss_pred             CcccccccccC----Cccc--CCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRR----MPRV--PADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~----v~~V--~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..+++++|.+.    +++|  ++++++.++++.|.+++.+.+||+|
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~   55 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVV   55 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEES
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEE
Confidence            46789998776    7889  9999999999999999999999993

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.56  E-value=0.00011  Score=67.71  Aligned_cols=41  Identities=12%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             CCcccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 TETPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ~~~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+.+++++|.  ++++++++++++.++++.|.+++...+||+|
T Consensus        34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd   76 (173)
T 3ocm_A           34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCR   76 (173)
T ss_dssp             TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEES
T ss_pred             CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe
Confidence            3678999986  4688999999999999999999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.37  E-value=0.00015  Score=71.66  Aligned_cols=61  Identities=15%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|++  +++++++++++. ++++.|.++++..+||++++ |+++|+|+..|++....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            357789999984  688999999999 99999999999999999865 89999999999997654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.26  E-value=0.00019  Score=71.55  Aligned_cols=61  Identities=13%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++..++||++++ |+++|+|+..|++....
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHH
Confidence            357789999985  688999999999 99999999999999999865 89999999999987643

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.26  E-value=0.0003  Score=76.15  Aligned_cols=40  Identities=10%  Similarity=0.161  Sum_probs=37.9

Q ss_pred             CcccccccccCCcccCCC-CCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPAD-MPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~-~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +.+|+++|.+++++|+++ +++.++++.|.+++.+.+||+|
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd  423 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD  423 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE
Confidence            467999999999999999 9999999999999999999998

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.07  E-value=0.00039  Score=77.06  Aligned_cols=56  Identities=7%  Similarity=-0.031  Sum_probs=49.0

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      +++|+|++  +++++++|+++. ++++.|.+++..++||++ + |+++|+|+.+|+++...
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVve-~-G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVTE-R-GKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEEE-T-TEEEEEEEGGGTEECCC
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehhhHHHHHh
Confidence            48999995  788999999999 999999999999999994 4 89999999999987654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.03  E-value=0.00053  Score=73.41  Aligned_cols=61  Identities=15%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      -.+.+++++|++  +++++++++++. ++++.|.+++...+||+|++ |+++|+|+.+|++....
T Consensus       216 ~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          216 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHH
Confidence            367899999984  788999999999 99999999999999999865 89999999999987643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.93  E-value=0.00051  Score=73.94  Aligned_cols=101  Identities=14%  Similarity=0.170  Sum_probs=16.0

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC--
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM--  299 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v--  299 (517)
                      .+.+|+++|+|+.+++++++++++. ++++.|.+++...+||+|++ ++++|+|+.+|+++...... ..++- ...+  
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~p~-a~kd~-~grl~v  220 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAKTYPL-ASKDE-QGRLRV  220 (490)
T ss_dssp             ----------------------------------------------------------------CTT-CCBCT-TSCBCC
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhccCcc-hhhhc-cCccee
Confidence            4678999999755789999999999 99999999999999999865 89999999999997643211 11111 0111  


Q ss_pred             -cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 -PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 -~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       ..+.......+.++.+.+.+...+ ++|
T Consensus       221 ~aavG~~~~~~~~a~~l~~aG~d~I-~id  248 (490)
T 4avf_A          221 GAAVGTGADTGERVAALVAAGVDVV-VVD  248 (490)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEE-EEE
T ss_pred             eeeeccccchHHHHHHHhhcccceE-Eec
Confidence             123333344566666767777644 444

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.87  E-value=0.00053  Score=73.62  Aligned_cols=101  Identities=16%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc-
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP-  300 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~-  300 (517)
                      .+.+++++|+++.+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++...... ...++...+-.. 
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~-~~~~D~~~~l~vg  229 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVIEHP-NAARDEKGRLLVG  229 (494)
T ss_dssp             ----------------------------------------------------------CHHHHTCT-TCCBCTTSCBCCE
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhhccc-cccccchhhhccc
Confidence            4578999999756789999999999 99999999999999999865 8999999999999764321 112221001001 


Q ss_pred             -ccCCCCCHHHHHHHHHhCCCcEEEE
Q 010123          301 -RVPADMPLYDILNEFQKGSSHMAAV  325 (517)
Q Consensus       301 -~V~~~~~l~daL~~m~~~~~~~apV  325 (517)
                       -+.......+.+..+.+.+...+.+
T Consensus       230 a~ig~~~~~~~~a~~l~~aGvd~v~i  255 (494)
T 1vrd_A          230 AAVGTSPETMERVEKLVKAGVDVIVI  255 (494)
T ss_dssp             EEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred             cccCcCHhHHHHHHHHHHhCCCEEEE
Confidence             1333455677888888888777654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.74  E-value=0.00068  Score=73.12  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      .+.+++++|+|+.++++++++.++. ++++.|.+++..++||+|++ ++++|+|+.+|+++..
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            5678999999766689999999999 99999999999999999876 8999999999999764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.56  E-value=0.0011  Score=71.10  Aligned_cols=107  Identities=17%  Similarity=0.247  Sum_probs=21.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC--
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM--  299 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v--  299 (517)
                      .+.+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++....... ...+.+.+-.  
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~  222 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVA  222 (486)
T ss_dssp             ---------------------------------------------------------------CCTT-CCBCTTSCBCCE
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeec
Confidence            45689999985  688999999999 99999999999999999865 89999999999997654211 1111111100  


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEee-CCCCcccc
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVKV-KGKSKKSQ  336 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVDE-yG~~~G~~  336 (517)
                      ..+..+ . .+.+..+.+.+...+ |+|. .|...+.+
T Consensus       223 ~~~~~~-~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          223 AAVSPF-D-IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             EEECTT-C-HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             ceechh-h-HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence            012233 3 566778888888875 5663 44444443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.48  E-value=0.0088  Score=63.90  Aligned_cols=101  Identities=14%  Similarity=0.177  Sum_probs=70.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc-
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP-  300 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~-  300 (517)
                      .+.+++++|++ .+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++....... ...+...+-.. 
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~~~-~~~d~~~~~~vg  225 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEFPH-AAKDEFGRLLVA  225 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-CCBCTTSCBCCE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhccc-cccCcCCcEEEE
Confidence            56789999984 2678899999999 99999999999999999865 89999999999997654311 11111101011 


Q ss_pred             -ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 -RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 -~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                       .+.......+.+..+.+.+...+. ++
T Consensus       226 ~~i~~~~~~~~~a~~l~~~G~d~iv-i~  252 (491)
T 1zfj_A          226 AAVGVTSDTFERAEALFEAGADAIV-ID  252 (491)
T ss_dssp             EEECSSTTHHHHHHHHHHHTCSEEE-EC
T ss_pred             EeccCchhHHHHHHHHHHcCCCeEE-Ee
Confidence             133333445556667777777654 55

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.45  E-value=0.0011  Score=71.49  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCc-
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMP-  300 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~-  300 (517)
                      .+.+++++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++....... ...+ +..++. 
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~~~-~~~~-~~~rl~v  246 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNRDYPL-ASKD-SQKQLLC  246 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCCCCTT-CCBC-TTSCBCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHhhCcc-hhcc-cCCceee
Confidence            4678999999655788999999999 99999999999999999865 89999999999987643221 1222 111111 


Q ss_pred             --ccCCCCCHHHHHHHHHhCCCcEE
Q 010123          301 --RVPADMPLYDILNEFQKGSSHMA  323 (517)
Q Consensus       301 --~V~~~~~l~daL~~m~~~~~~~a  323 (517)
                        .+.......+.++.+.+.+...+
T Consensus       247 ga~vG~~~~~~~~a~~~~~aG~d~v  271 (514)
T 1jcn_A          247 GAAVGTREDDKYRLDLLTQAGVDVI  271 (514)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             eeEecCchhhHHHHHHHHHcCCCEE
Confidence              13333445666677777777654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.33  E-value=0.0016  Score=70.25  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=16.1

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCc----cccccccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETET----PVSAVSIR  297 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~----~V~dim~r  297 (517)
                      .+.+|+++||+  ++++++.+.+++ ++.+.|.+++..++||+|++ ++++|+|+.+|+.+.......    .-+.++..
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~~~p~A~k~d~~grL~Vg  273 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQNYPYASKVPESKQLYCG  273 (556)
T ss_dssp             ----------------------------------------------------------------CTTCCBCTTTCCBCCE
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEEechhhhhhhCCcchhcchhhceeeE
Confidence            35689999996  799999999999 99999999999999999876 899999999999875321110    00111111


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      -.+-+.+  .-.+-+..+.+.+...+ |+|
T Consensus       274 AAVgv~~--d~~eR~~aLv~AGvD~i-viD  300 (556)
T 4af0_A          274 AAIGTRP--GDKDRLKLLAEAGLDVV-VLD  300 (556)
T ss_dssp             EEECSSH--HHHHHHHHHHHTTCCEE-EEC
T ss_pred             EEeccCc--cHHHHHHHHHhcCCcEE-EEe
Confidence            1122333  24556667777887765 555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-08
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.004
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSL 280
           +      + +         D + ++  +A   ++  G    P++    ++ +G+L +   
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 281 LTVRAE-------------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSH 321
           + +                              S + +  +  +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 322 MAAVV 326
              V+
Sbjct: 129 RLPVI 133

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 15/159 (9%), Positives = 38/159 (23%), Gaps = 25/159 (15%)

Query: 206 ELTHDETTIISGALD-LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIY 264
           ++   +   +      +  +T+ + +         DV       ++  +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 265 SGNPKNIIGLLLVKSLLTV-----------------------RAETETPVSAVSIRRMPR 301
                   GLL +   + V                                         
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 302 VPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISL 340
           V     L D      K  +    ++ V G++     +S+
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV 158

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 16/156 (10%), Positives = 39/156 (25%), Gaps = 19/156 (12%)

Query: 290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKKSQSISLGEKFGGNGV 349
           PV      ++  +  ++ L   +    +       V+    K     ++    K     V
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAV 62

Query: 350 FSGNSQLTTPLLTNDVTSETTPLLTNDVTSESVVVGIDRTSRPNTNNQSLPPQLGAAAEN 409
              +       +  DV                           +              + 
Sbjct: 63  DKLDPDYFYGKVVKDVMVTNLV-------------------TIDELASVNRAAAEMIVKR 103

Query: 410 LPYSLEDIEEGVVIGIITLEDVFEELLQEEIVDETD 445
           +   L   ++  + GIIT  D+   L    ++++  
Sbjct: 104 IGSLLILNKDNTIRGIITERDLLIALHHILVMEKFK 139

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 418 EEGVVIGIITLEDVFEELLQEEIVDETD 445
           + G V+GI+TL D+   L +  I D   
Sbjct: 108 DPGRVVGIVTLTDLSRYLSRASITDILL 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.8
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.76
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.74
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.73
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.73
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.72
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.72
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.72
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.72
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.7
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.67
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.65
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.64
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.63
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.63
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.54
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.28
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.24
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.21
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.15
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.15
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.13
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.09
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.09
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.08
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.03
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.01
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.97
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.93
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.91
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.85
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.8
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.8
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.73
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.7
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.62
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.53
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.51
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.37
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.17
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	86.94

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=6.4e-20  Score=161.38  Aligned_cols=101  Identities=16%  Similarity=0.272  Sum_probs=90.6

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---------CCccccc
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---------TETPVSA  293 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---------~~~~V~d  293 (517)
                      +.||+++|+|..+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....         .+.++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            578999999999999999999999 99999999999999999876 899999999999865322         2467899


Q ss_pred             ccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          294 VSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       294 im~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|.++++++++++++.+++..|.+++  .+||+|
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd  110 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN  110 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC
T ss_pred             cccccccccccchhHHHHHHHHHhCC--EEEEEc
Confidence            99999999999999999999998764  599999

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=3e-19  Score=157.91  Aligned_cols=100  Identities=15%  Similarity=0.236  Sum_probs=90.3

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------CCccccc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----------TETPVSA  293 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----------~~~~V~d  293 (517)
                      .+|+++|++  +++++++++|+. ++++.|.+++++++||++++ ++++|+++.+|++.....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            479999996  689999999999 99999999999999999875 889999999998754321          2568999


Q ss_pred             ccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          294 VSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       294 im~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|.++++++.+++++.++++.|.+++.+.+||+|
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd  111 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN  111 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999999999

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=4.7e-19  Score=162.81  Aligned_cols=122  Identities=11%  Similarity=0.150  Sum_probs=104.9

Q ss_pred             ChhHHHHHHHhhcc-cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc
Q 010123          208 THDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE  286 (517)
Q Consensus       208 ~~eE~~iI~~vl~L-~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~  286 (517)
                      .+.++..++.+.+| .+.++.|+|++..++++++.+.++. ++++.|.+++++++||++++.++++|+++.+|++.....
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            35678889999986 9999999999888999999999999 999999999999999999766899999999999753210


Q ss_pred             ---------C--------------CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEeeCC
Q 010123          287 ---------T--------------ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVKVKG  330 (517)
Q Consensus       287 ---------~--------------~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVDEyG  330 (517)
                               .              ......+|.+++++|++++++.+++..|.+++.|.+||+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             ccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence                     0              0123345788999999999999999999999999999999654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=3.5e-18  Score=148.17  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=90.8

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVP  303 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~  303 (517)
                      ++|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++....  +.++.++|.+++++++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            478999994  889999999999 99999999999999999765 89999999999987644  5689999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          304 ADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       304 ~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++.++++.|.+++.+.+||||
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVD   98 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHhcCceeeeeEC
Confidence            999999999999999999999999

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.4e-18  Score=152.38  Aligned_cols=97  Identities=15%  Similarity=0.173  Sum_probs=89.4

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARG-----HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM  299 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g-----~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v  299 (517)
                      ||+.+|++  +++++++++++. ++++.|++++     ++.+||++++ ++++|++..++++....  +.++.++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            78999994  899999999999 9999998774     6899999876 89999999999987644  678999999999


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD  103 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTD  103 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEe
Confidence            9999999999999999999999999999

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.76  E-value=2.8e-18  Score=149.89  Aligned_cols=102  Identities=16%  Similarity=0.261  Sum_probs=93.0

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc---CCccccccccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE---TETPVSAVSIR  297 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~---~~~~V~dim~r  297 (517)
                      |++.+|+|+|++  +++++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++.....   .+.++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999985  899999999999 9999999999999999985  689999999999875432   35789999999


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++|++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  105 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEe
Confidence            999999999999999999999999999999

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=4.1e-18  Score=148.97  Aligned_cols=101  Identities=13%  Similarity=0.179  Sum_probs=90.1

Q ss_pred             cccccccccc-cceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCccccccccc
Q 010123          224 KTAEEAMTPI-ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSAVSIR  297 (517)
Q Consensus       224 ~tV~dIMtPr-~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~dim~r  297 (517)
                      +||+|||+.+ .+++++++++++. ++++.|.+++++++||+++  ++++|+++.+|++.....     .+.+++++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            4799999863 4799999999999 9999999999999999984  789999999999754221     24679999999


Q ss_pred             CCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          298 RMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       298 ~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  108 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLD  108 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEE
Confidence            999999999999999999999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=8.8e-19  Score=152.38  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=72.0

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCCcccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVP  303 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~  303 (517)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++....  +..+.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            478999996  788999999999 99999999999999999875 89999999999987643  5678899999999999


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          304 ADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       304 ~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++.++++.|.+++.+.+||||
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVD   98 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEe
Confidence            999999999999999999999999

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=2.5e-18  Score=152.52  Aligned_cols=100  Identities=25%  Similarity=0.269  Sum_probs=90.7

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc------------CCccc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE------------TETPV  291 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~------------~~~~V  291 (517)
                      .+|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....            .+.++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999995  789999999999 99999999999999999876 899999999999854321            24689


Q ss_pred             ccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          292 SAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       292 ~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  113 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEE
Confidence            999999999999999999999999999999999999

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=2.7e-18  Score=149.21  Aligned_cols=100  Identities=14%  Similarity=0.233  Sum_probs=89.0

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-c----CCcccccccccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-E----TETPVSAVSIRR  298 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-~----~~~~V~dim~r~  298 (517)
                      .||+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.... .    ....++++|..+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            489999985  799999999999 99999999999999999865 89999999999875321 1    235678899899


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd  105 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVIS  105 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEE
Confidence            99999999999999999999999999999

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=8.8e-18  Score=150.82  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=91.9

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------  286 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------  286 (517)
                      |.+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....              
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            468899999984  799999999999 99999999999999999865 899999999998643110              


Q ss_pred             --------------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 --------------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 --------------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                          ...++.++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd  137 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  137 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe
Confidence                                13578899999999999999999999999999999999999

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=2e-18  Score=154.50  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcC-----CcEEEEEeCCCCCEEEEEEhhhHhcccccCCcccccccccCC
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARG-----HSRVPIYSGNPKNIIGLLLVKSLLTVRAETETPVSAVSIRRM  299 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g-----~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v  299 (517)
                      ||+++|++  +++++++++++. ++++.|++++     ++.+||++++ ++++|+++.+|++....  +.++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            79999995  899999999999 9999998775     6788999876 89999999999987644  678999999999


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++++++.++++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd  103 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVD  103 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEEC
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEe
Confidence            9999999999999999999999999999

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=4.7e-18  Score=151.49  Aligned_cols=100  Identities=20%  Similarity=0.263  Sum_probs=90.4

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc-----cCCcccccccccC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA-----ETETPVSAVSIRR  298 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~-----~~~~~V~dim~r~  298 (517)
                      ++|+|+|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....     ....+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999995  899999999999 99999999999999999875 89999999999975421     1245799999999


Q ss_pred             CcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          299 MPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       299 v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  107 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVD  107 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEe
Confidence            99999999999999999999999999999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=5e-18  Score=152.94  Aligned_cols=106  Identities=10%  Similarity=0.287  Sum_probs=92.8

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-------------
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-------------  287 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-------------  287 (517)
                      |..+|+.|+|++..++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45789999999889999999999999 9999999999999999987668899999999997643210             


Q ss_pred             ------CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ------ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ------~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                            .....++|.++++++++++++.++++.|.+++.|.+||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd  134 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID  134 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE
Confidence                  1133467788999999999999999999999999999998

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.8e-17  Score=144.50  Aligned_cols=100  Identities=12%  Similarity=0.233  Sum_probs=90.1

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCC
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRM  299 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v  299 (517)
                      .+|+|+|+  ++++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....    .+.+++++|.+++
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcC--CCCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            47999998  4899999999999 99999999999999999875 899999999999864322    2568999999999


Q ss_pred             cccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          300 PRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       300 ~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++.+++++.++++.|.+++.+.+||+|
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~  108 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE  108 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE
Confidence            9999999999999999999999999876

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.72  E-value=1.2e-17  Score=144.52  Aligned_cols=98  Identities=14%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----CCcccccccccCCc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----TETPVSAVSIRRMP  300 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----~~~~V~dim~r~v~  300 (517)
                      +|+|+|++  +++++++++|+. ++++.|.+++++.+||.++  ++++|+|+.+|++.....    .+.++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            58999994  889999999999 9999999999999999975  799999999999875332    25689999999999


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|++++++.++++.|++++.+.+||+|
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~  102 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEE  102 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEE
Confidence            999999999999999999999999976

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.70  E-value=6.1e-17  Score=141.19  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             cccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCH
Q 010123          230 MTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPL  308 (517)
Q Consensus       230 MtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l  308 (517)
                      |+  .+++++++++++. ++++.|.+++++++||+|+. .++++|+|+.+|++............+|.++++++++++++
T Consensus         3 mi--~dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (126)
T d1zfja4           3 VI--IDPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDL   79 (126)
T ss_dssp             TS--SSCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCH
T ss_pred             CE--eCceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCH
Confidence            55  3678999999999 99999999999999999852 37899999999998765544333444456778899999999


Q ss_pred             HHHHHHHHhCCCcEEEEEe
Q 010123          309 YDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       309 ~daL~~m~~~~~~~apVVD  327 (517)
                      .++++.|.+++.+.+||||
T Consensus        80 ~~a~~~m~~~~~~~lpVVd   98 (126)
T d1zfja4          80 ETAERILHEHRIEKLPLVD   98 (126)
T ss_dssp             HHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHhcCCcEEEEEc
Confidence            9999999999999999999

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.70  E-value=6.8e-17  Score=144.56  Aligned_cols=103  Identities=9%  Similarity=-0.006  Sum_probs=88.5

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhccccc--------------
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLTVRAE--------------  286 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~~~~~--------------  286 (517)
                      .+.+|+|||++  +++++++++++. ++++.|.+++++.+||++++ .+.++|+++..|++.....              
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999995  899999999999 99999999999999999853 3679999999999753211              


Q ss_pred             ---------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ---------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ---------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                     ....+.++|.+++++|.+++++.++++.|.+++.+.+||+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d  141 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS  141 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE
Confidence                           01235567889999999999999999999999999999988

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.67  E-value=1.9e-16  Score=142.31  Aligned_cols=101  Identities=13%  Similarity=0.178  Sum_probs=85.4

Q ss_pred             cccccccc-ccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc-----CCccccccc---
Q 010123          225 TAEEAMTP-IESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE-----TETPVSAVS---  295 (517)
Q Consensus       225 tV~dIMtP-r~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~-----~~~~V~dim---  295 (517)
                      +++++|.+ +++++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....     .+.++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            56778765 56899999999999 99999999999999999865 899999999999865432     134555554   


Q ss_pred             ---ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          296 ---IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       296 ---~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                         ..++.++++++++.++++.|.+++.+.+||||
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  114 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  114 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc
Confidence               35566899999999999999999999999999

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=1.2e-16  Score=139.93  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=88.1

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc--------------CCc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE--------------TET  289 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~--------------~~~  289 (517)
                      ++|+++|++  ++.++++++++. ++++.|.++|++++||++   ++++|+++..|++.....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999996  788999999999 999999999999999985   469999999999865321              146


Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd  112 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD  112 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe
Confidence            89999999999999999999999999999999999999

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=5.2e-16  Score=137.67  Aligned_cols=105  Identities=14%  Similarity=0.192  Sum_probs=87.1

Q ss_pred             cccccccccccc-ccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----Ccc----
Q 010123          221 LTEKTAEEAMTP-IESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETP----  290 (517)
Q Consensus       221 L~~~tV~dIMtP-r~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~----  290 (517)
                      |-..++++++.+ ..+++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++......     +.+    
T Consensus         6 f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~   83 (145)
T d2v8qe1           6 FMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKA   83 (145)
T ss_dssp             GGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH
T ss_pred             HhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhc
Confidence            345677877654 35799999999999 99999999999999999865 8899999999998765432     222    


Q ss_pred             --cccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          291 --VSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       291 --V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                        ....|..+++++.+++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  122 (145)
T d2v8qe1          84 LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  122 (145)
T ss_dssp             GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc
Confidence              2334567888999999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.64  E-value=3e-16  Score=136.91  Aligned_cols=101  Identities=12%  Similarity=0.113  Sum_probs=86.6

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCC-CCCEEEEEEhhhHhcccccC--CcccccccccCCc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGN-PKNIIGLLLVKSLLTVRAET--ETPVSAVSIRRMP  300 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd-~d~iVGiV~~kDLl~~~~~~--~~~V~dim~r~v~  300 (517)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++.+ .++++|+++..|++......  .......+.++++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999984  789999999999 99999999999999999633 37799999999998764332  2233444678889


Q ss_pred             ccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          301 RVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       301 ~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++.+++++.++++.|.+++.+.+||+|
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd  104 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVN  104 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEc
Confidence            999999999999999999999999999

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=5.3e-16  Score=137.32  Aligned_cols=100  Identities=18%  Similarity=0.238  Sum_probs=84.8

Q ss_pred             ccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccccc----------------
Q 010123          223 EKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAE----------------  286 (517)
Q Consensus       223 ~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~----------------  286 (517)
                      -..+.++|+  ++++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++.....                
T Consensus         3 ~~~v~~~m~--~~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (145)
T d1o50a3           3 VKDVCKLIS--LKPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM   78 (145)
T ss_dssp             HHHHTTSSC--CCCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred             ceEhHHhCC--CCCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhh
Confidence            346788898  4789999999999 99999999999999999865 899999999999764211                


Q ss_pred             ---CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ---TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ---~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                         ...+++++| ++++++.+++++.++++.|.+++.+.+||||
T Consensus        79 ~~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd  121 (145)
T d1o50a3          79 KRLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD  121 (145)
T ss_dssp             CCCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe
Confidence               123456654 6778999999999999999999999999999

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.1e-16  Score=142.14  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             cccccccccccce----EEecCCCChhHHHHHHHHHcCCcEEEEEeC-CCCCEEEEEEhhhHhccccc------------
Q 010123          224 KTAEEAMTPIEST----FSLDVNSKLDWEAIGKILARGHSRVPIYSG-NPKNIIGLLLVKSLLTVRAE------------  286 (517)
Q Consensus       224 ~tV~dIMtPr~~v----v~v~~d~tl~~eal~~l~~~g~Sr~PV~dd-d~d~iVGiV~~kDLl~~~~~------------  286 (517)
                      ..|+|||.|+...    +.+..+.|+. ++.+.|.+++++++||+++ +.++++|+|+.+||+.....            
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            5689999986432    5567888999 9999999999999999953 34679999999999853210            


Q ss_pred             ----------------CCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          287 ----------------TETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       287 ----------------~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                                      ...+++++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence                            12457899999999999999999999999999999999987

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=6e-16  Score=136.78  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             cccccccc-cccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccccC-----Cccc----
Q 010123          222 TEKTAEEA-MTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRAET-----ETPV----  291 (517)
Q Consensus       222 ~~~tV~dI-MtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~~~-----~~~V----  291 (517)
                      -.++++|+ +.+..++++++.++++. ++++.|.+++++++||++++ ++++|+++.+|++......     ...+    
T Consensus         4 ~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~   81 (140)
T d2nyca1           4 LKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEAL   81 (140)
T ss_dssp             GGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHH
T ss_pred             ccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhh
Confidence            34667765 33347899999999999 99999999999999999865 7899999999998754322     1111    


Q ss_pred             --ccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          292 --SAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       292 --~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                        ...+..++++|++++++.++++.|.+++.+.+||||
T Consensus        82 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd  119 (140)
T d2nyca1          82 MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  119 (140)
T ss_dssp             HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe
Confidence              223456788999999999999999999999999999

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=5.5e-16  Score=134.25  Aligned_cols=93  Identities=12%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             cceEEecCCCChhHHHHHHHHHcCCcEEEEEeC--CCCCEEEEEEhhhHhccccc-CCcccccccc--cCCcccCCCCCH
Q 010123          234 ESTFSLDVNSKLDWEAIGKILARGHSRVPIYSG--NPKNIIGLLLVKSLLTVRAE-TETPVSAVSI--RRMPRVPADMPL  308 (517)
Q Consensus       234 ~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~dd--d~d~iVGiV~~kDLl~~~~~-~~~~V~dim~--r~v~~V~~~~~l  308 (517)
                      ++++++++++++. ++++.|.+++++++||+++  ..++++|+|+.+|+...... .+.++..+|.  .+++++++++++
T Consensus         4 ~~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   82 (120)
T d1jr1a4           4 TDPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITL   82 (120)
T ss_dssp             CTTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCH
T ss_pred             cCCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCH
Confidence            3678999999999 9999999999999999975  23789999999998644322 2345555543  467889999999


Q ss_pred             HHHHHHHHhCCCcEEEEEe
Q 010123          309 YDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       309 ~daL~~m~~~~~~~apVVD  327 (517)
                      .+|++.|++++.+.+||||
T Consensus        83 ~~a~~~m~~~~i~~lpVVd  101 (120)
T d1jr1a4          83 KEANEILQRSKKGKLPIVN  101 (120)
T ss_dssp             HHHHHHTCSCC---CEEEE
T ss_pred             HHHHHHHHHcCccEEEEEc
Confidence            9999999999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.28  E-value=6.4e-07  Score=77.04  Aligned_cols=40  Identities=8%  Similarity=0.125  Sum_probs=38.2

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ..||+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd   43 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN   43 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEec
Confidence            3589999999999999999999999999999999999999

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.24  E-value=3.1e-07  Score=78.85  Aligned_cols=61  Identities=13%  Similarity=0.272  Sum_probs=54.5

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      -.+.+|+++|++  +++++.+++++. ++++.|.++++.++||+|++ ++++|+|+.+|++....
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            357889999995  788999999999 99999999999999999865 89999999999987643

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=4.3e-07  Score=77.13  Aligned_cols=39  Identities=8%  Similarity=-0.017  Sum_probs=37.2

Q ss_pred             cccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      ++++|+|.++++++.+++++.+|++.|.+++.+.+||+|
T Consensus         1 tt~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd   39 (123)
T d1y5ha3           1 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICG   39 (123)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEe
Confidence            468899999999999999999999999999999999998

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.15  E-value=1e-06  Score=75.54  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=54.8

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      +...+++++|++  +++++++++++. ++++.|.+++.+++||++++ |+++|+|+.+|+++...
T Consensus        71 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          71 ISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             cccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            345789999985  788999999999 99999999999999999865 89999999999998754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=1.1e-06  Score=77.13  Aligned_cols=61  Identities=26%  Similarity=0.364  Sum_probs=53.8

Q ss_pred             hcccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          219 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       219 l~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      ....+.+|+++|++  +++++.+++++. ++++.|.+++++++||++++ ++++|+|+.+|++++
T Consensus        94 ~~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          94 LQLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ---CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGG
T ss_pred             hcccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            34577899999996  688999999999 99999999999999999876 899999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.13  E-value=1.9e-06  Score=72.71  Aligned_cols=38  Identities=21%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .|+++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~   38 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK   38 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe
Confidence            37899999999999999999999999999999999887

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.09  E-value=3.1e-06  Score=73.62  Aligned_cols=61  Identities=10%  Similarity=0.170  Sum_probs=54.7

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|+.  +++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.+..
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTSC
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHHHHh
Confidence            456789999984  789999999999 99999999999999999875 89999999999998654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.09  E-value=3.8e-06  Score=71.48  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             CcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          288 ETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       288 ~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +..|+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         3 ~~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d   42 (127)
T d2ef7a1           3 EEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD   42 (127)
T ss_dssp             CCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec
Confidence            4578999999999999999999999999999999999998

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.08  E-value=2.7e-06  Score=73.53  Aligned_cols=38  Identities=13%  Similarity=0.075  Sum_probs=36.6

Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++|+|.++++++++++++.+|++.|.+++.+.+||+|
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd   40 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   40 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec
Confidence            57899999999999999999999999999999999999

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.03  E-value=2.8e-06  Score=72.71  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=36.3

Q ss_pred             ccccccc--ccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVS--IRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim--~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+++++|  .+++++|.+++++.+|++.|.+++.+.+||+|
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd   42 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD   42 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEee
Confidence            5788888  57899999999999999999999999999999

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.01  E-value=2.8e-06  Score=74.25  Aligned_cols=61  Identities=15%  Similarity=0.295  Sum_probs=54.8

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++....
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHH
Confidence            456789999994  788999999999 99999999999999999875 89999999999987654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.97  E-value=1.3e-06  Score=74.05  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      .+.++.++|+.+.+++++.+++++. ++++.|.+++++++||++++ ++++|+|+.+|+++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            3567888898888899999999999 99999999999999999876 899999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.93  E-value=7.9e-06  Score=69.50  Aligned_cols=57  Identities=21%  Similarity=0.364  Sum_probs=51.8

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTV  283 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~  283 (517)
                      .+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  |+++|+|+.+|+++.
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            45789999985  788999999999 9999999999999999984  799999999999865

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.91  E-value=5.9e-06  Score=70.94  Aligned_cols=38  Identities=11%  Similarity=0.179  Sum_probs=36.9

Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|+++|.+++.+|++++++.+|++.|.+++.+.+||+|
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~   40 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID   40 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc
Confidence            68999999999999999999999999999999999999

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.85  E-value=8.5e-06  Score=68.87  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|+++..
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~  116 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHT
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHH
Confidence            355679999985  788999999999 99999999999999999865 8999999999998654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.80  E-value=1.4e-05  Score=69.42  Aligned_cols=96  Identities=10%  Similarity=0.072  Sum_probs=69.5

Q ss_pred             cccHHHHHHHHHhhhhhcc----cCCCCChhHHHHHHHhhcccccccccccccccceEEecCCCChhHHHHHHHHHcCCc
Q 010123          184 LFRRAQLKALVSIHSQEAG----KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHS  259 (517)
Q Consensus       184 ~~s~eEL~~lv~~~~~e~~----~~G~L~~eE~~iI~~vl~L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~S  259 (517)
                      .++..|+..++.-+.....    +......................++++|.+  .++++++++++. ++++.|.++++.
T Consensus        59 ~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~  135 (160)
T d2d4za3          59 SIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLD  135 (160)
T ss_dssp             EEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             cchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCe
Confidence            3577888777753221110    011111223344455566777889999985  678999999999 999999999999


Q ss_pred             EEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          260 RVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       260 r~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ++||+++  |+++|+|+.+|++++.
T Consensus       136 ~l~V~d~--g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         136 RAYVTSM--GKLVGVVALAEIQAAI  158 (160)
T ss_dssp             EEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             EEEEEEC--CEEEEEEEHHHHHHHh
Confidence            9999874  8999999999998753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=1.3e-05  Score=69.04  Aligned_cols=38  Identities=16%  Similarity=0.206  Sum_probs=35.1

Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .+.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus         5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd   42 (145)
T d1o50a3           5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA   42 (145)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE
T ss_pred             EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec
Confidence            35667888999999999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.74  E-value=2e-05  Score=66.74  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=36.3

Q ss_pred             ccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|+++|.++++++++++++.++++.|.+++.+.+||++
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~   39 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTA   39 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEE
Confidence            58899999999999999999999999999999999996

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.73  E-value=2.7e-05  Score=65.92  Aligned_cols=61  Identities=16%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ........+|+  .+++++.+++++. ++++.|.+++++++||++++ ++++|+|+.+|++++..
T Consensus        57 ~~~~~~~~~~~--~~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          57 YNAPISEHMTS--EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             SSSBTTTSCCC--SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHH
T ss_pred             cCCceeeeeec--cceeecCCCCCHH-HHHHHHHhcCCcEEEEEcCC-CeEEEEEEHHHHHHHhh
Confidence            33333444444  4677899999999 99999999999999999765 89999999999997643

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.6e-05  Score=70.56  Aligned_cols=60  Identities=12%  Similarity=0.169  Sum_probs=53.4

Q ss_pred             ccccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          221 LTEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       221 L~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      ....+++++|++  +++++++++++. ++++.|.++++.++||.++  ++++|+|+.+|++++..
T Consensus        97 ~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          97 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHH
T ss_pred             ccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            456789999996  688999999999 9999999999999999874  78999999999997653

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=4.1e-05  Score=65.69  Aligned_cols=34  Identities=12%  Similarity=0.365  Sum_probs=32.0

Q ss_pred             ccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          294 VSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       294 im~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +|..++.+|.+++++.+|++.|.+++...+||+|
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd   47 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   47 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            4668899999999999999999999999999999

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=2.8e-05  Score=65.34  Aligned_cols=60  Identities=10%  Similarity=0.200  Sum_probs=53.2

Q ss_pred             cccccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhcccc
Q 010123          222 TEKTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVRA  285 (517)
Q Consensus       222 ~~~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~~  285 (517)
                      .+.++.++|+.  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|++.+..
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvde~-g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          58 LDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccC--ccEEECCCCCHH-HHHHHHHhcCceeeeeECCC-CeEEEEEEHHHHHHHHH
Confidence            35689999984  677899999999 99999999999999999876 89999999999997643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.53  E-value=7.2e-05  Score=65.17  Aligned_cols=38  Identities=13%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             ccccccc---cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          290 PVSAVSI---RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       290 ~V~dim~---r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      |++++++   +++++|.+++++.++++.|.+++...+||+|
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd   42 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN   42 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeec
Confidence            4556553   4789999999999999999999999999999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=2.8e-05  Score=67.96  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=51.2

Q ss_pred             cccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          224 KTAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       224 ~tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ..+.++|++  +++++++++++. ++++.|.+++..++||++++.++++|+|+.+|++++.
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            346778884  788999999999 9999999999999999986558999999999999764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=0.00011  Score=63.24  Aligned_cols=56  Identities=9%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             ccccccccccceEEecCCCChhHHHHHHHHHcCCcEEEEEeCCCCCEEEEEEhhhHhccc
Q 010123          225 TAEEAMTPIESTFSLDVNSKLDWEAIGKILARGHSRVPIYSGNPKNIIGLLLVKSLLTVR  284 (517)
Q Consensus       225 tV~dIMtPr~~vv~v~~d~tl~~eal~~l~~~g~Sr~PV~ddd~d~iVGiV~~kDLl~~~  284 (517)
                      ++...|.+  +++++.+++++. ++++.|.++++.++||++++ ++++|+|+.+|++.+.
T Consensus        85 ~~~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~GiVt~~dii~~l  140 (145)
T d2v8qe1          85 QHRSHYFE--GVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQAL  140 (145)
T ss_dssp             GGCCSCCC--SCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             chhhhccC--CCeEECCCCcHH-HHHHHHHHcCceEEEEEccC-CEEEEEEEHHHHHHHH
Confidence            45556664  677899999999 99999999999999999765 8999999999998764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.17  E-value=0.00014  Score=64.48  Aligned_cols=39  Identities=10%  Similarity=-0.066  Sum_probs=35.5

Q ss_pred             cccccccc--cCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          289 TPVSAVSI--RRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       289 ~~V~dim~--r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      .++.|+|.  .+++++++++++.+|++.|.+++...+||+|
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd   60 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWD   60 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEE
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEe
Confidence            46788885  5788999999999999999999999999999

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=86.94  E-value=0.00063  Score=61.97  Aligned_cols=57  Identities=14%  Similarity=0.029  Sum_probs=47.3

Q ss_pred             CCEEEEEEhhhHhcccccCCcccccccccCCcccCCCCCHHHHHHHHHhCCCcEEEEEe
Q 010123          269 KNIIGLLLVKSLLTVRAETETPVSAVSIRRMPRVPADMPLYDILNEFQKGSSHMAAVVK  327 (517)
Q Consensus       269 d~iVGiV~~kDLl~~~~~~~~~V~dim~r~v~~V~~~~~l~daL~~m~~~~~~~apVVD  327 (517)
                      +++.|++.+.++.....  ...++++|...+.++..+++-..+.+.|.+++...+||+|
T Consensus       119 ~~l~~f~dl~~l~~~~~--~~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~  175 (213)
T d1lkvx_         119 RRMFVFEDILKLDDRSI--QLVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLK  175 (213)
T ss_dssp             HHHCCGGGGGGSCHHHH--HHHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHH
T ss_pred             hhccccccHHHHccccH--hHHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHH
Confidence            56778888777665433  4567888877788899999999999999999999999999