Citrus Sinensis ID: 010138

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
MTRHFRSKSCGFVGLTEFNSPPPSPFFHHSNRNNDDDDEEEEEFECDTDTDNDNEGYDNISGSPLSTPFIINPGSRFGGVNGDGQSGNSTSTHHHHHHNNQFQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREEAAAKARLLSPCSDSPNNKNDSHLSNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAVTLGRLESDAEEKFWNFHEKSVGEEDIESVSDSSKPALCERETGASENGFGVGYNNGDWLSLRRGVRRLCRHPLFQLGKPAKKTRNLGIVNTEEGGEEETCA
ccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcEEEEcccccccccEcccccccEEEEEEEEccccccccccccccccccccccccccccccccHHHHEHcHccccccccHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mtrhfrskscgfvgltefnspppspffhhsnrnnddddeeeeefecdtdtdndnegydnisgsplstpfiinpgsrfggvngdgqsgnststhhhhhhnnqFQIRDILVAALRKSLVTCsvegedeasmdiswptevrhVSHVTfdrfngflglptelepevprkapsasvsVFGVSAksmqcsyddrgnsvPTILLMMQRHLysegglkaegifrinaensqEEYVRDQlnkgvvphgiDVHCLAGLIKAWLRelptgvldsltpdqvmhcnteedctqlvkllppseAALLDWAINLMADVVQHEQYNKMNARNiamvfapnmtqmadPLTALIHAVQVMNFLKTLILKILREREEAAAKARllspcsdspnnkndshlsniktdpeaevpleltdqdsctpegpeiskfsravtlgrlesdAEEKFWNFheksvgeediesvsdsskpalceretgasengfgvgynngdwlslRRGVRRlcrhplfqlgkpakktrnlgivnteeggeeetca
mtrhfrskscgfvgLTEFNSPPPSPFFHHSNRNNDDDDEEEEEFECdtdtdndneGYDNISGSPLSTPFIINPGSRFGGVNGDGQSGNSTSTHHHHHHNNQFQIRDILVAALRKSLVTCSVEgedeasmdiswpTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREEAAAKArllspcsdspnnkndshlsnIKTDPEAEVPLELTdqdsctpegpeiskfsrAVTLGRLESDAEEKFWNFHeksvgeediesvsdssKPALCERetgasengfgvgynngDWLSLRRGVRRLCRHplfqlgkpakktrnlgivnteeggeeetca
MTRHFRSKSCGFVGLTEfnspppspffhhsnRnnddddeeeeefecdtdtdndneGYDNISGSPLSTPFIINPGSRFGGVNGDGQSGnststhhhhhhnnQFQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKIlrereeaaakarllSPCSDSPNNKNDSHLSNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAVTLGRLESDAEEKFWNFHEKSVGEEDIESVSDSSKPALCERETGASENGFGVGYNNGDWLSLRRGVRRLCRHPLFQLGKPAKKTRNLGIVNTEEGGEEETCA
***********FV****************************************************************************************FQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPT****************VFGVS***MQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRE*************************************************************************FWN********************************GFGVGYNNGDWLSLRRGVRRLCRHPLFQLGK***********************
*******************************************************************************************************************************************************************************VSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREE***************************************************************************************************************************************************************
********SCGFVGLTEFNSPPPSPFFHHSN******************TDNDNEGYDNISGSPLSTPFIINPGSRFGGVNGD****************NQFQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREEAAAKARLLSPCSDSPNNKNDSHLSNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAVTLGRLESDAEEKFWNFHEKS****************LCERETGASENGFGVGYNNGDWLSLRRGVRRLCRHPLFQLGKPAKKTRNLGIVNT**********
*******KSCGFVGLTEFNSPPPSPFFHHS**********************************************************************QFQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRE******************************************************************************************************************************************************************
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MTRHFRSKSCGFVGLTEFNSPPPSPFFHHSNRNNDDDDEEEEEFECDTDTDNDNEGYDNISGSPLSTPFIINPGSRFGGVNGDGQSGNSTSTHHHHHHNNQFQIRDILVAALRKSLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREEAAAKARLLSPCSDSPNNKNDSHLSNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAVTLGRLESDAEEKFWNFHEKSVGEEDIESVSDSSKPALCERETGASENGFGVGYNNGDWLSLRRGVRRLCRHPLFQLGKPAKKTRNLGIVNTEEGGEEETCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query517 2.2.26 [Sep-21-2011]
Q54Y72338 Rho GTPase-activating pro yes no 0.363 0.556 0.333 1e-22
Q101641275 Probable Rho-type GTPase- yes no 0.313 0.127 0.3 2e-16
Q5U2Z7 748 Rho GTPase-activating pro no no 0.421 0.291 0.293 3e-15
Q8C4V1 747 Rho GTPase-activating pro yes no 0.421 0.291 0.293 4e-15
Q55GP8684 Rho GTPase-activating pro no no 0.295 0.223 0.309 1e-14
Q54QF4 909 Mental retardation GTPase no no 0.259 0.147 0.300 2e-13
Q8N264 748 Rho GTPase-activating pro no no 0.323 0.223 0.296 3e-13
Q8BL80 702 Rho GTPase-activating pro no no 0.282 0.207 0.318 3e-12
Q54TH9721 Rho GTPase-activating pro no no 0.359 0.257 0.293 1e-11
Q7Z5H3 698 Rho GTPase-activating pro no no 0.282 0.209 0.312 6e-11
>sp|Q54Y72|GACA_DICDI Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 114/192 (59%), Gaps = 4/192 (2%)

Query: 173 VFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLN 232
           VFGV   +++   +D G  VP IL +M+R L   GGL+ EGIFR+  E ++ + +++ +N
Sbjct: 143 VFGVDPNTLE-HVEDEGFRVPYILALMKRSLIDNGGLQQEGIFRLAGEQTEIKRLKEAMN 201

Query: 233 KGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAAL 292
           +       D++ +A LIK W RELPT +L+S+  +++ +    ++C Q  K LP  + +L
Sbjct: 202 RNDFTSSTDINTVASLIKIWYRELPTPILNSIPTEKIFYSTDIDECVQSAKNLPEPQKSL 261

Query: 293 LDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQM--ADPLTALIHAVQVMNFLKTLIL 350
           LDW ++L+  V      NKM A+N+A+V APN+  +  ++P+  L+ + + + FL  ++ 
Sbjct: 262 LDWLMHLLLMVSSFSDVNKMTAQNLAIVVAPNLYDVSSSNPMEGLVLSQKCVQFLHNVLS 321

Query: 351 -KILREREEAAA 361
            K+   + E+ A
Sbjct: 322 HKVAVHKRESVA 333
Rho GTPase-activating protein involved in the signal transduction pathway.
Dictyostelium discoideum (taxid: 44689)
>sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rga2 PE=1 SV=1 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q55GP8|GACO_DICDI Rho GTPase-activating protein gacO OS=Dictyostelium discoideum GN=gacO PE=3 SV=1 Back     alignment and function description
>sp|Q54QF4|MGP4_DICDI Mental retardation GTPase activating protein homolog 4 OS=Dictyostelium discoideum GN=mgp4 PE=3 SV=1 Back     alignment and function description
>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2 Back     alignment and function description
>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2 Back     alignment and function description
>sp|Q54TH9|GACY_DICDI Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1 Back     alignment and function description
>sp|Q7Z5H3|RHG22_HUMAN Rho GTPase-activating protein 22 OS=Homo sapiens GN=ARHGAP22 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
224128021490 predicted protein [Populus trichocarpa] 0.934 0.985 0.678 0.0
356573259497 PREDICTED: rho GTPase-activating protein 0.938 0.975 0.645 1e-171
359489368474 PREDICTED: rho GTPase-activating protein 0.893 0.974 0.639 1e-171
224064346419 predicted protein [Populus trichocarpa] 0.794 0.980 0.707 1e-169
356506090422 PREDICTED: rho GTPase-activating protein 0.791 0.969 0.718 1e-169
255578192511 gtpase activating protein, putative [Ric 0.934 0.945 0.618 1e-167
3695061424 rac GTPase activating protein 2 [Lotus j 0.814 0.992 0.665 1e-161
357514407488 Rac GTPase activating protein, partial [ 0.791 0.838 0.686 1e-157
147865247546 hypothetical protein VITISV_038805 [Viti 0.796 0.754 0.551 1e-143
449520205486 PREDICTED: uncharacterized LOC101203614 0.773 0.823 0.677 1e-141
>gi|224128021|ref|XP_002320221.1| predicted protein [Populus trichocarpa] gi|222860994|gb|EEE98536.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/516 (67%), Positives = 401/516 (77%), Gaps = 33/516 (6%)

Query: 1   MTRHFRSKSCGFVGLTEFNS-PPPSPFFHHSNRNNDDDDEEEEEFECDTDTDNDNEGYDN 59
           MTR FRSKSCG VGLTE NS PPPSPFFH   RN  +D EE+E+ + + +       Y +
Sbjct: 1   MTRLFRSKSCGLVGLTESNSAPPPSPFFH---RNGTEDGEEDEDEDDEEEL------YSD 51

Query: 60  ISGSPLSTPFIINPGSRFG-GVNGDGQSGNSTSTHHHHHHNNQFQIRDILVAALRKSLVT 118
            SG+P+STPFI   GSR G G +  G++GNS         N +F I D+LV ALRKSLVT
Sbjct: 52  ASGNPISTPFI---GSREGTGGSERGRNGNS---------NKEFAILDVLVTALRKSLVT 99

Query: 119 CSVEGEDEASMDISWPTEVRHVSHVTFDRFNGFLGLPTELEPEVPRKAPSASVSVFGVSA 178
           CSVE ED +SMDISWPTEVRHVSHVTFDRFNGFLGLPTE EPEVP K PSAS +VFGVSA
Sbjct: 100 CSVEREDVSSMDISWPTEVRHVSHVTFDRFNGFLGLPTEFEPEVPCKVPSASANVFGVSA 159

Query: 179 KSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPH 238
           KSMQCS+DD+GNSVPTILLMMQ  LY EGGLKAEGIFRINAEN +EEYVR+QLNKGVVP 
Sbjct: 160 KSMQCSHDDKGNSVPTILLMMQERLYIEGGLKAEGIFRINAENGREEYVRNQLNKGVVPR 219

Query: 239 GIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEEDCTQLVKLLPPSEAALLDWAIN 298
           GI+VHCLAGLIKAW RELP+GVLDS+TP+QVMHCNTE+DCTQLVK LP +EAAL DWAIN
Sbjct: 220 GIEVHCLAGLIKAWFRELPSGVLDSITPEQVMHCNTEDDCTQLVKQLPLTEAALFDWAIN 279

Query: 299 LMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILREREE 358
           LMADVV+HEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN LKTLILK LREREE
Sbjct: 280 LMADVVEHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMNLLKTLILKTLREREE 339

Query: 359 AAAKARLLSPCSDSPNNKNDSHL-SNIKTDPEAEVPLELTDQDSCTPEGPEISKFSRAVT 417
           ++AK RLLS CSDSP +K++S   SN+ +    ++ L     ++  PE P   KF R  T
Sbjct: 340 SSAKLRLLSTCSDSPGDKSESACHSNLNSKELCKISL-----NAGAPEIPSTGKFLRPAT 394

Query: 418 LGRLESDAEEKFWNFHEKSVGEEDIESVSDSSKPALCERETGASENGFGVGYNNGDWLSL 477
           + RLES+ EEK+W F +K  GEE+ + VS SS P    RE G  ++G    Y++GDWLS 
Sbjct: 395 MNRLESNTEEKYWRFQKKGDGEEEFKPVSSSSPPF---REMGTLDSGCKGEYDSGDWLSF 451

Query: 478 RRGVRRLCRHPLFQLGKPAKKTRNLGIVNTE-EGGE 512
           R+GVRRLC HP+FQL KP KKTR +GIVNT   GGE
Sbjct: 452 RKGVRRLCIHPVFQLSKPVKKTRGIGIVNTRGRGGE 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356573259|ref|XP_003554780.1| PREDICTED: rho GTPase-activating protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|359489368|ref|XP_003633913.1| PREDICTED: rho GTPase-activating protein 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064346|ref|XP_002301430.1| predicted protein [Populus trichocarpa] gi|222843156|gb|EEE80703.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506090|ref|XP_003521820.1| PREDICTED: rho GTPase-activating protein 25-like [Glycine max] Back     alignment and taxonomy information
>gi|255578192|ref|XP_002529964.1| gtpase activating protein, putative [Ricinus communis] gi|223530526|gb|EEF32407.1| gtpase activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|3695061|gb|AAC62625.1| rac GTPase activating protein 2 [Lotus japonicus] Back     alignment and taxonomy information
>gi|357514407|ref|XP_003627492.1| Rac GTPase activating protein, partial [Medicago truncatula] gi|355521514|gb|AET01968.1| Rac GTPase activating protein, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|147865247|emb|CAN84111.1| hypothetical protein VITISV_038805 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449520205|ref|XP_004167124.1| PREDICTED: uncharacterized LOC101203614 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query517
TAIR|locus:2062770455 ROPGAP3 "ROP guanosine triphos 0.640 0.727 0.662 2.8e-121
TAIR|locus:2139330430 AT4G03100 [Arabidopsis thalian 0.628 0.755 0.575 9.4e-98
TAIR|locus:2176392466 AT5G22400 [Arabidopsis thalian 0.663 0.736 0.571 3.2e-97
TAIR|locus:2080762435 AT3G11490 [Arabidopsis thalian 0.663 0.788 0.568 1.1e-96
TAIR|locus:2199948331 AT1G08340 [Arabidopsis thalian 0.624 0.975 0.533 2e-86
DICTYBASE|DDB_G0278381338 gacA "papD-like domain-contain 0.340 0.520 0.340 1.4e-27
RGD|1306669 748 Arhgap24 "Rho GTPase activatin 0.617 0.426 0.267 7.4e-15
MGI|MGI:1922647 747 Arhgap24 "Rho GTPase activatin 0.617 0.427 0.279 1.2e-14
UNIPROTKB|I3LB15182 LOC100625079 "Uncharacterized 0.311 0.884 0.337 2.4e-13
DICTYBASE|DDB_G0267568684 gacO "RhoGAP domain-containing 0.303 0.229 0.304 1.1e-12
TAIR|locus:2062770 ROPGAP3 "ROP guanosine triphosphatase (GTPase)-activating protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1111 (396.2 bits), Expect = 2.8e-121, Sum P(3) = 2.8e-121
 Identities = 232/350 (66%), Positives = 269/350 (76%)

Query:   101 QFQIRDILVAALRKSLV-TCSVE-GEDE--ASMDISWPTEVRHVSHVTFDRFNGFLGLPT 156
             Q  + D+L A LRKSLV +C++E GED+  ASMDI WPTEV+HVSHVTFDRFNGFLGLP+
Sbjct:    71 QLTVVDLLAAVLRKSLVMSCAMERGEDDVVASMDIGWPTEVKHVSHVTFDRFNGFLGLPS 130

Query:   157 ELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFR 216
             ELEPEVP +APSASVSVFGVSAKSMQCSYDDRGNSVPTILL MQ+ LY+EGGLKAEGIFR
Sbjct:   131 ELEPEVPPRAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLRMQKRLYTEGGLKAEGIFR 190

Query:   217 INAENSQEEYVRDQLNKGVVPHGIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEE 276
             IN +N +EE+VR QLN GVVP GIDVHCLAGLIKAW RELPTGVLD LTP+QVM CNTEE
Sbjct:   191 INPDNGKEEHVRRQLNCGVVPRGIDVHCLAGLIKAWFRELPTGVLDVLTPEQVMRCNTEE 250

Query:   277 DCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALI 336
             DC++LV LLPP E+A+LDWAI LMADVV+HEQ+NKMNARN+AMVFAPNMTQMADPLTALI
Sbjct:   251 DCSRLVILLPPVESAILDWAIGLMADVVEHEQFNKMNARNVAMVFAPNMTQMADPLTALI 310

Query:   337 HAVQVMNFLKTLILKIXXXXXXXXXXXXXXSPCSDSPNNKNDSHLSNIKTDPEAEVPLEL 396
             HAVQVMNFLKTLIL                   +  P+ + +S  S I + PE   P   
Sbjct:   311 HAVQVMNFLKTLILMNLKERENADAKARWLKKQTSDPSEEWESQHSEILS-PEK--P--- 364

Query:   397 TDQDSCTPEGPEISKFSRAVTLGRLESDAEEKFWNFHEKSVGEEDIESVS 446
                ++  P      KF R  TL RLE+D EE+FWN  +++  E  +++ S
Sbjct:   365 ---NNNNP------KFLRVATLCRLEADNEEEFWNIKKRNDHEGVLDTSS 405
GO:0005737 "cytoplasm" evidence=ISM
GO:0030675 "Rac GTPase activator activity" evidence=ISS
GO:0009926 "auxin polar transport" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009531 "secondary cell wall" evidence=IDA
GO:0009664 "plant-type cell wall organization" evidence=IMP
TAIR|locus:2139330 AT4G03100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176392 AT5G22400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080762 AT3G11490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199948 AT1G08340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278381 gacA "papD-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1306669 Arhgap24 "Rho GTPase activating protein 24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922647 Arhgap24 "Rho GTPase activating protein 24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LB15 LOC100625079 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267568 gacO "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 7e-34
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 2e-32
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 4e-31
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 9e-23
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 7e-21
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 8e-20
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 4e-17
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 1e-16
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 4e-16
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 4e-16
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 4e-14
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 5e-14
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 1e-13
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 2e-13
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 2e-12
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 2e-11
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 6e-11
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 2e-10
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 5e-10
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 2e-09
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 2e-09
pfam0078659 pfam00786, PBD, P21-Rho-binding domain 6e-09
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 4e-07
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 5e-07
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 5e-07
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 5e-07
cd0013242 cd00132, CRIB, PAK (p21 activated kinase) Binding 2e-06
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 8e-06
smart0028536 smart00285, PBD, P21-Rho-binding domain 1e-05
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 3e-05
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 3e-05
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 6e-05
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 6e-04
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 0.001
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 0.001
cd04380220 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas 0.003
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information 
 Score =  125 bits (317), Expect = 7e-34
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 13/171 (7%)

Query: 191 SVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP----HGIDVHCLA 246
            +P I+     +L   G L  EGI+R++   S+ + +RD  + G  P       DVH +A
Sbjct: 2   PIPIIVEKCIEYLEKRG-LDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVA 60

Query: 247 GLIKAWLRELPTGVL-DSLTPD--QVMHCNTEED----CTQLVKLLPPSEAALLDWAINL 299
           GL+K +LRELP  ++   L  +  +      E +      +L+ LLPP+  A L + +  
Sbjct: 61  GLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAH 120

Query: 300 MADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTA-LIHAVQVMNFLKTLI 349
           +  V +H + NKM ARN+A+VF P + +  D   A L         ++ LI
Sbjct: 121 LNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIRHQNTVIEFLI 171

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 517
KOG4270577 consensus GTPase-activator protein [Signal transdu 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 99.97
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 99.97
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.97
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.96
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.95
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.95
KOG1451812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.94
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 99.94
KOG2710412 consensus Rho GTPase-activating protein [Signal tr 99.91
KOG1453918 consensus Chimaerin and related Rho GTPase activat 99.9
KOG3564604 consensus GTPase-activating protein [General funct 99.9
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.89
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.74
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.72
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.64
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.63
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.47
KOG4370514 consensus Ral-GTPase effector RLIP76 [Signal trans 99.15
KOG3565640 consensus Cdc42-interacting protein CIP4 [Cytoskel 99.02
PF08101420 DUF1708: Domain of unknown function (DUF1708); Int 98.32
KOG4724741 consensus Predicted Rho GTPase-activating protein 97.56
KOG1453918 consensus Chimaerin and related Rho GTPase activat 95.56
KOG1449 670 consensus Predicted Rho GTPase-activating protein 93.86
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 86.0
KOG1449 670 consensus Predicted Rho GTPase-activating protein 84.88
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-43  Score=380.39  Aligned_cols=250  Identities=52%  Similarity=0.777  Sum_probs=231.9

Q ss_pred             ccccccCCCCCccccCCCCcccccccCceehhhhcc---ccCCCCccCCCCCCCCCCCCCccccccccccccccCCCCCC
Q 010138          115 SLVTCSVEGEDEASMDISWPTEVRHVSHVTFDRFNG---FLGLPTELEPEVPRKAPSASVSVFGVSAKSMQCSYDDRGNS  191 (517)
Q Consensus       115 sl~~~~~~~~dl~~~~igwpt~vr~ls~it~~rf~~---~lGlP~~~~~~~pr~~p~~~~~vFGv~L~~L~~~~~~~g~~  191 (517)
                      ..+-+.+..++.+.+.|+|++++++..+++|++|.+   ++|+|.+.++.++++.+.+...+|||+++.+++.++.++..
T Consensus        85 ~~~~~~~~e~e~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~  164 (577)
T KOG4270|consen   85 AKIDTLKEEEEECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNF  164 (577)
T ss_pred             chhhhhhchHHhhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCc
Confidence            444555677799999999999999999999999999   99999999999999999999999999999999999998888


Q ss_pred             ccHHHHHHHH-HHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCCCC--CchhhhHHHHHHHHHhCCCCCCCCCChHH
Q 010138          192 VPTILLMMQR-HLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPHG--IDVHCLAGLIKAWLRELPTGVLDSLTPDQ  268 (517)
Q Consensus       192 VP~IL~~~i~-~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~~~--~D~h~VAsLLK~fLReLPePLlp~~ly~~  268 (517)
                      ||.|+..++. +||.+.|++.|||||++|...+++.||++||.|..+..  .|||+||++||.||||||+||+++.+|++
T Consensus       165 vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e  244 (577)
T KOG4270|consen  165 VPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKE  244 (577)
T ss_pred             chhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHH
Confidence            9999999999 99999999999999999999999999999999998776  99999999999999999999999999999


Q ss_pred             Hhhc---ccHH----HHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHhhhcccCCCCChhHHHHHHHHH
Q 010138          269 VMHC---NTEE----DCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQV  341 (517)
Q Consensus       269 ~i~~---~~~e----~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiVFaPnLlr~~d~~~~l~~~~~~  341 (517)
                      |+.+   +.++    .++.++.+||+.|+.+|+|+|.||++|+++++.|||+++||||||||||+|+.++.++++.++++
T Consensus       245 ~~qv~~~~~e~~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqv  324 (577)
T KOG4270|consen  245 WTQVQNCENEDEKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQV  324 (577)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHH
Confidence            8765   3333    35566669999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhc
Q 010138          342 MNFLKTLILKILREREEAAAKAR  364 (517)
Q Consensus       342 ~~~v~~LIen~l~~fee~~~~a~  364 (517)
                      +++++.||+.+++.++......-
T Consensus       325 s~~~~~lie~~l~~~~~~~~g~~  347 (577)
T KOG4270|consen  325 SNFLKGLIEKTLEERDTSFPGEL  347 (577)
T ss_pred             HHHHHHHHHHHHHhhhccCCccc
Confidence            99999999999999987766543

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 2e-09
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 2e-09
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 3e-09
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 3e-09
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 2e-08
3msx_B201 Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With 2e-07
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 2e-07
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 5e-07
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 5e-07
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 9e-07
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 1e-05
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 7e-05
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 2e-04
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 4e-04
3kuq_A228 Crystal Structure Of The Dlc1 Rhogap Domain Length 9e-04
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 174 FGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNK 233
           FGVS + +Q   +     +P +L     +L +   L  EGIFR +A       V+ + N 
Sbjct: 45  FGVSLQHLQEK-NPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVREVQQKYNM 102
Query: 234 GVVPHGID----VHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEED-----CTQLVK 283
           G+ P   D    +H  A ++K +LRELP  +L   L P  V   N +E        Q+++
Sbjct: 103 GL-PVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQ 161
Query: 284 LLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVMN 343
            LP     +L +    +  +  H   NKM   N+A+VF PN+    D    L     +  
Sbjct: 162 TLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPINT 221
Query: 344 FLKTLI 349
           F K L+
Sbjct: 222 FTKFLL 227
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201 Back     alignment and structure
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query517
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 1e-31
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 5e-31
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 4e-29
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 1e-27
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 9e-27
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 1e-25
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 5e-25
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 3e-24
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 4e-23
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 4e-22
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 6e-22
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 1e-21
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 2e-20
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 7e-20
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 2e-19
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-15
2qme_I36 CRIB domain of the serine/threonine-protein kinas; 2e-04
2odb_B35 Serine/threonine-protein kinase PAK 6; small GTPas 3e-04
2ov2_I35 Serine/threonine-protein kinase PAK 4; GTPase RAC3 3e-04
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
 Score =  121 bits (305), Expect = 1e-31
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 11/199 (5%)

Query: 160 PEVPRKAPSASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINA 219
           P+     P      FGVS        +     +P +L     +L +   L  EGIFR +A
Sbjct: 31  PKPMPPRPPLPNQQFGVS-LQHLQEKNPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSA 88

Query: 220 ENSQEEYVRDQLNKGVVPH---GIDVHCLAGLIKAWLRELPTGVLDSLTPDQVMHCNTEE 276
                  V+ + N G+        ++H  A ++K +LRELP  +L       V+     +
Sbjct: 89  NTQVVREVQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNID 148

Query: 277 D------CTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMAD 330
           +        Q+++ LP     +L +    +  +  H   NKM   N+A+VF PN+    D
Sbjct: 149 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 208

Query: 331 PLTALIHAVQVMNFLKTLI 349
               L     +  F K L+
Sbjct: 209 AAITLKAINPINTFTKFLL 227
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Length = 36 Back     alignment and structure
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Length = 35 Back     alignment and structure
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Length = 35 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query517
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
2odb_B35 Serine/threonine-protein kinase PAK 6; small GTPas 80.16
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
Probab=100.00  E-value=8.4e-40  Score=312.57  Aligned_cols=187  Identities=25%  Similarity=0.313  Sum_probs=166.1

Q ss_pred             CCCCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCCC---CCchhh
Q 010138          168 SASVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVPH---GIDVHC  244 (517)
Q Consensus       168 ~~~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~~---~~D~h~  244 (517)
                      +.+.++||++|+++... ......||.+|.+|++|| +++|+++|||||++|+..++++|++.+|+|...+   ..|+|+
T Consensus         3 ~~~~~vFG~~L~~~~~~-~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~   80 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQEK-NPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHL   80 (198)
T ss_dssp             CCTTCCTTSCHHHHHHH-STTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred             CCCCCccCCcHHHHHhh-CCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchH
Confidence            44678999999998543 322358999999999998 6899999999999999999999999999987543   358999


Q ss_pred             hHHHHHHHHHhCCCCCCCCCChHHHhhcc------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhH
Q 010138          245 LAGLIKAWLRELPTGVLDSLTPDQVMHCN------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIA  318 (517)
Q Consensus       245 VAsLLK~fLReLPePLlp~~ly~~~i~~~------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLA  318 (517)
                      +|++||.|||+||+||||.++|+.|+++.      +.+.++.++.+||+.|+.+|+||+.||++|+++++.|||++.|||
T Consensus        81 ~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa  160 (198)
T 1tx4_A           81 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA  160 (198)
T ss_dssp             HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            99999999999999999999999999863      346789999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138          319 MVFAPNMTQMADPLTALIHAVQVMNFLKTLILKILRER  356 (517)
Q Consensus       319 iVFaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~f  356 (517)
                      +||||+|+++++....+........+++.||+|+-+.|
T Consensus       161 ~vf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~~~~iF  198 (198)
T 1tx4_A          161 VVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF  198 (198)
T ss_dssp             HHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             hhhcccccCCCCccccHHHHHHHHHHHHHHHHhHHHhC
Confidence            99999999999877777777788899999999887654
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 517
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 1e-30
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 1e-26
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 2e-22
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 3e-20
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-30
 Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 172 SVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQL 231
             FGVS + +    +     +P +L     +L     L  EGIFR +A       V+ + 
Sbjct: 5   QQFGVSLQHL-QEKNPEQEPIPIVLRETVAYLQ-AHALTTEGIFRRSANTQVVREVQQKY 62

Query: 232 NKGVVPH---GIDVHCLAGLIKAWLRELPTGVLD-SLTPDQVMHCNTEEDCT-----QLV 282
           N G+         +H  A ++K +LRELP  +L   L P  V   N +E        Q++
Sbjct: 63  NMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 122

Query: 283 KLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMVFAPNMTQMADPLTALIHAVQVM 342
           + LP     +L +    +  +  H   NKM   N+A+VF PN+    D    L     + 
Sbjct: 123 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 182

Query: 343 NFLKTLI 349
            F K L+
Sbjct: 183 TFTKFLL 189
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query517
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=294.54  Aligned_cols=185  Identities=25%  Similarity=0.321  Sum_probs=166.3

Q ss_pred             CCccccccccccccccCCCCCCccHHHHHHHHHHHHcCCCccCCceeccCChhHHHHHHHHHhcCCCC---CCCchhhhH
Q 010138          170 SVSVFGVSAKSMQCSYDDRGNSVPTILLMMQRHLYSEGGLKAEGIFRINAENSQEEYVRDQLNKGVVP---HGIDVHCLA  246 (517)
Q Consensus       170 ~~~vFGv~L~~L~~~~~~~g~~VP~IL~~~i~~Lie~~GL~~EGIFRisGs~~~I~~Lr~~Ld~g~~~---~~~D~h~VA  246 (517)
                      ++++||++|++++ +.+.....||.+|.+|++|| +++|+++|||||++|+...++++++.++.|...   ...++|+||
T Consensus         3 ~~~~FG~~L~~l~-~~~~~~~~vP~~l~~~~~~l-~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~va   80 (196)
T d1tx4a_           3 PNQQFGVSLQHLQ-EKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPA   80 (196)
T ss_dssp             TTCCTTSCHHHHH-HHSTTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHH
T ss_pred             CCCCcCCCHHHHH-hhCCCCCCCChHHHHHHHHH-HHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccccccHHHHH
Confidence            5779999999874 34445677999999999998 679999999999999999999999999998754   345899999


Q ss_pred             HHHHHHHHhCCCCCCCCCChHHHhhcc------cHHHHHHHHHhcChhHHHHHHHHHHHhhHhhhccccCCCChhhhHHh
Q 010138          247 GLIKAWLRELPTGVLDSLTPDQVMHCN------TEEDCTQLVKLLPPSEAALLDWAINLMADVVQHEQYNKMNARNIAMV  320 (517)
Q Consensus       247 sLLK~fLReLPePLlp~~ly~~~i~~~------~~e~l~~Ll~~LP~~Nr~lL~~Li~fL~~V~~~s~~NKMt~~NLAiV  320 (517)
                      ++||+|||+||+||++..+|+.++.+.      +.++++.++.+||+.|+.+|.+|+.||++|+.|++.|||++.|||+|
T Consensus        81 ~~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~  160 (196)
T d1tx4a_          81 VILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVV  160 (196)
T ss_dssp             HHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            999999999999999999999998763      34678889999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 010138          321 FAPNMTQMADPLTALIHAVQVMNFLKTLILKILRER  356 (517)
Q Consensus       321 FaPnLlr~~d~~~~l~~~~~~~~~v~~LIen~l~~f  356 (517)
                      |||+|++.++....+........+++.||+|+-..|
T Consensus       161 f~P~l~~~~~~~~~~~~~~~~~~~~~~LI~~~~~iF  196 (196)
T d1tx4a_         161 FGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF  196 (196)
T ss_dssp             HHHHHCCCSSHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             HhhhhcCCCCcchhHHHHHHHHHHHHHHHHhHHhhC
Confidence            999999999887777778888899999999987654
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure