Citrus Sinensis ID: 010143

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------
Protein Sequence
MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mkrqcdekRNVCEYVMAQQrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDyqfsgledndgedgedsyyaneagelsfdyrdnkqgldVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidpaerIRQVQqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqkkedrdygdahlsehsglksqsllkesdsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssgpitytelPQIVSGllshapvpqtktsprvsptaspplvsspriselhelprppnafatkpakssglvghsaplmfrnqehtstnknpsmasytasplpipplivsrsfsipsssQKAMALHVSKflespkvveksegvssppltpislanvkpVSIVSEVSsqsaqnqr
Flexible Loop (DISEMBL)
mkrqcdekrnvCEYVMAQqrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAgelsfdyrdnkQGLDVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidPAERIRQVqqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqKKEDRDYGDAHLsehsglksqslLKESDsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssGPITYTELPQIVSGLLSHAPVPQTktsprvsptasppLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKvveksegvssppltpislanvkpVSIVSevssqsaqnqr
Low Complexity Region (SEG)
MKRQCDEKRNVCEYVMAQQRekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSgledndgedgedSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQassgpltsksssskpalsssgPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVsrsfsipsssQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Disordered region (IsUnstruct)
*************************************************ARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSG*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********NVCE*******************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSF**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MKRQCDEKRNVCEYVMAQ**************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGE***********SFSAPIFPERKIDPAER***********PSTYVLPTPIDAKVPISS***************************************************************PLRDGLALPQLDTLNSSDTKK************************GPITYTELPQIVSGLLSHAPV*******************SPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFS********MALHVSKFLESP***********PPLTPISLANVKPVSIV************
Disordered Region (DISPRO)
**RQCDEKRNVCEYVMAQQREK*********SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLED***********ANEAGELSFDYRDNK*************************************************************************QQSSARQPSTYVLPTPIDA***********************************************************************************************************************************************************P*IS***E**RPPN******************************************LPIPPLIVSRSFSIPSSSQKAMALHVSK*********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRQCDEKRNVCEYVMAQQREKGKSKSGKGExxxxxxxxxxxxxxxxxxxxxCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	517	2.2.26 [Sep-21-2011]
O22799	623	Uncharacterized protein A	yes	no	0.872	0.723	0.449	8e-89

>sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2

 Score =  328 bits (840), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 238/529 (44%), Positives = 317/529 (59%), Gaps = 78/529 (14%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           M+R CDEKRNV E ++ +QREKG+SK GKGE+ S  QQLQ A+D+YE E  L VFRLKSL
Sbjct: 132 MQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSL 190

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL------- 113
           KQGQ RSLLTQAARHHAAQL FF+K   SLE VD HV++V E QHIDY FSGL       
Sbjct: 191 KQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDD 250

Query: 114 ----EDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTV 169
                +NDG +  D       GELSF+YR N +  D  S++  S E+ + D++FPQ    
Sbjct: 251 EIENNENDGSEVHDD------GELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIGGP 304

Query: 170 ENAEVNLDKNPGEYQASH---RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTY 225
             A+ N +   G Y+ SH   R+ R  S SAP+FPE R   P+E++ +++ +  R+ +TY
Sbjct: 305 YTAQENEE---GNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTY 361

Query: 226 VLPTPIDAKVPISSSVAPRTR---PSNPS-GRTYNLSHSSPLEQKKEDRDYGDAHLSEHS 281
            LPTP++     SS+ +P  +    SNP+   T  + +SSPLE +      G A +S  S
Sbjct: 362 ALPTPVETTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPLETR------GPAKVSSRS 415

Query: 282 --GLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSS 339
              LK Q +L+ES+  N S  PPPL DGL   +L TL        K ++ SGPLTSK   
Sbjct: 416 MVALKEQ-VLRESN-KNTSRLPPPLADGLLFSRLGTL--------KRRSFSGPLTSKPLP 465

Query: 340 SKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTS--PRV--SPTASPPLVSSPRISELH 395
           +KP  ++S          + SG     P+P+   S  P+V  SPTASP  VS+P+ISELH
Sbjct: 466 NKPLSTTS---------HLYSG-----PIPRNPVSKLPKVSSSPTASPTFVSTPKISELH 511

Query: 396 ELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRS 455
           ELPRPP   +T   KSS  +G+SAPL+ R+Q  +       + + +ASPLPIPP I +RS
Sbjct: 512 ELPRPPPRSST---KSSRELGYSAPLVSRSQLLSK-----PLITNSASPLPIPPAI-TRS 562

Query: 456 FSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSI 504
           FSIP+S+ +A  L +SK      +  K  G  SPPLTP+SL +  P ++
Sbjct: 563 FSIPTSNLRASDLDMSK----TSLGTKKLGTPSPPLTPMSLIHPPPQAL 607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,205,148
Number of Sequences: 539616
Number of extensions: 8179619
Number of successful extensions: 30414
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 866
Number of HSP's that attempted gapping in prelim test: 27674
Number of HSP's gapped (non-prelim): 2366
length of query: 517
length of database: 191,569,459
effective HSP length: 122
effective length of query: 395
effective length of database: 125,736,307
effective search space: 49665841265
effective search space used: 49665841265
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
255543639	656	conserved hypothetical protein [Ricinus	0.984	0.775	0.685	1e-166
296082302	643	unnamed protein product [Vitis vinifera]	0.945	0.760	0.664	1e-164
359488563	700	PREDICTED: uncharacterized protein At2g3	0.976	0.721	0.606	1e-163
224129244	625	predicted protein [Populus trichocarpa]	0.901	0.745	0.617	1e-149
224055789	649	predicted protein [Populus trichocarpa]	0.980	0.781	0.616	1e-145
356560450	637	PREDICTED: uncharacterized protein At2g3	0.926	0.751	0.552	1e-136
357508303	628	hypothetical protein MTR_7g083240 [Medic	0.932	0.767	0.561	1e-126
356570208	620	PREDICTED: uncharacterized protein At2g3	0.924	0.770	0.564	1e-124
296088724	651	unnamed protein product [Vitis vinifera]	0.967	0.768	0.505	1e-115
225425164	653	PREDICTED: uncharacterized protein At2g3	0.967	0.765	0.503	1e-114

>gi|255543639|ref|XP_002512882.1| conserved hypothetical protein [Ricinus communis] gi|223547893|gb|EEF49385.1| conserved hypothetical protein [Ricinus communis]

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 358/522 (68%), Positives = 412/522 (78%), Gaps = 13/522 (2%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY++AQQ+EKGKSKSGKGES +LQ+ L+ A+DEY+EEA LCVFRLKSL
Sbjct: 133 MKRQCDEKRNVYEYMVAQQKEKGKSKSGKGESFTLQE-LRTAHDEYDEEATLCVFRLKSL 191

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL---EDND 117
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAVD HV++VAE+QHIDYQFSGL      D
Sbjct: 192 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVDDHVKIVAEQQHIDYQFSGLEDDGRED 251

Query: 118 GEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLD 177
           GED +D   ANE  ELSFDYR+NKQG DV+S SR SMEVDD D+SFPQAS  ENAE+N D
Sbjct: 252 GEDDDDIGDANEGRELSFDYRENKQGHDVISASRNSMEVDDEDLSFPQASFTENAELNPD 311

Query: 178 KNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPI 237
           K+ G  QAS RE R  S SAPIFPERK DP ERIR + QSSAR+ +TYVLPTPIDAK PI
Sbjct: 312 KSQGGLQASLREPRPGSHSAPIFPERKSDPIERIR-LMQSSARKSNTYVLPTPIDAKSPI 370

Query: 238 SS----SVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
           SS    SVA  TRPS+ SGRT+NL HSSPLEQKK ++D GD HLSE + LK++S  K+S 
Sbjct: 371 SSRTSGSVA-NTRPSDFSGRTHNLWHSSPLEQKKHEKDPGDYHLSELTALKTRSAHKDSS 429

Query: 294 SNNAST-RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITY 352
            N+ ST  PPPL +G++LP LD  N+SD KKIK Q+ SGP+TSK  S+KPALS+SGPI  
Sbjct: 430 INSTSTLLPPPLVEGISLPHLDMYNASDNKKIKRQSFSGPITSKPWSTKPALSASGPIFS 489

Query: 353 TELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSS 412
            ELPQ VSG+ S   +PQ  TSP+VSPTASPPL SSPRISELHELPRPP  F TKPAKSS
Sbjct: 490 NELPQQVSGVPSRVTIPQN-TSPKVSPTASPPLASSPRISELHELPRPPGNFVTKPAKSS 548

Query: 413 GLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSK 472
             VGHSAPL+ RN EH+ T +  S  +  ASPLPIPPLIV RSFSIPSSSQ+AM +HVSK
Sbjct: 549 APVGHSAPLV-RNPEHSGTIRVSSGVTNLASPLPIPPLIVPRSFSIPSSSQRAMTIHVSK 607

Query: 473 FLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQ 514
            +ES ++ +K+E V SPPLTPISLAN+K  S +SE+   S Q
Sbjct: 608 SVESLQMPDKTEEVDSPPLTPISLANLKTASTISEIIPHSGQ 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082302|emb|CBI21307.3| unnamed protein product [Vitis vinifera]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 336/506 (66%), Positives = 399/506 (78%), Gaps = 17/506 (3%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY+ AQQREKG+SKSGKGES+   QQL AA+DE+ +EA LCVFRLKSL
Sbjct: 133 MKRQCDEKRNVYEYMKAQQREKGRSKSGKGESL---QQLTAAHDEFNDEATLCVFRLKSL 189

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGED 120
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAV+ H+R+VAERQHIDYQFSGLED+D ED
Sbjct: 190 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVEQHLRVVAERQHIDYQFSGLEDDDVED 249

Query: 121 GE----DSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNL 176
           GE    + Y A+E GELSFDYR NK+G++VVS +R SME+D  D+SFPQASTVE  E+N 
Sbjct: 250 GEDDGENGYDASEGGELSFDYRQNKRGIEVVSATRNSMELDQSDLSFPQASTVETVELNP 309

Query: 177 DKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVP 236
           +KN G+ Q   RE R  S+SAPI  E K DP+ERIR   QSS R+  TYVLP P+ AK  
Sbjct: 310 EKNHGDLQGFSREPRAGSYSAPIIAE-KSDPSERIRT--QSSTRKLHTYVLPIPVGAKSS 366

Query: 237 I---SSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
               +S+  PRTRP++  G T NL HSSPLE KK ++D GD H+S  +  ++QS+LKES+
Sbjct: 367 TPSRTSNSVPRTRPTSLHGGTRNLWHSSPLEPKKHEKDSGDDHMSGSTISEAQSVLKESN 426

Query: 294 SNNASTR-PPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITY 352
           SNNA+ R PPPL +GL+LPQLDTLN+SDTKK+K  A SGPLT K  S+KP LSSSGPI  
Sbjct: 427 SNNAAIRLPPPLAEGLSLPQLDTLNTSDTKKVKRLAFSGPLTGKPWSTKPVLSSSGPIAP 486

Query: 353 TELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSS 412
            ELPQ+VSGLLS  P+PQ  +SP++SP+ASPPLVSSPRI+ELHELPRPP + ATKPA+  
Sbjct: 487 AELPQLVSGLLSRVPIPQPSSSPKISPSASPPLVSSPRINELHELPRPPVSLATKPARFP 546

Query: 413 GLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSK 472
           GLVGHSAPL+ RN E ++T+K  SMAS  ASPLP PP  V RS+SIPSSSQ+A ALHV+K
Sbjct: 547 GLVGHSAPLISRN-ELSATSKTSSMASNAASPLPTPP--VPRSYSIPSSSQRATALHVTK 603

Query: 473 FLESPKVVEKSEGVSSPPLTPISLAN 498
            LES +  +K+E V SPPLTPISL+N
Sbjct: 604 VLESSQNPDKAEEVGSPPLTPISLSN 629

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488563|ref|XP_002275111.2| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 347/572 (60%), Positives = 411/572 (71%), Gaps = 67/572 (11%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY+ AQQREKG+SKSGKGES+   QQL AA+DE+ +EA LCVFRLKSL
Sbjct: 133 MKRQCDEKRNVYEYMKAQQREKGRSKSGKGESL---QQLTAAHDEFNDEATLCVFRLKSL 189

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGED 120
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAV+ H+R+VAERQHIDYQFSGLED+D ED
Sbjct: 190 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVEQHLRVVAERQHIDYQFSGLEDDDVED 249

Query: 121 GE----DSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEV-- 174
           GE    + Y A+E GELSFDYR NK+G++VVS +R SME+D  D+SFPQASTVE  EV  
Sbjct: 250 GEDDGENGYDASEGGELSFDYRQNKRGIEVVSATRNSMELDQSDLSFPQASTVETVEVLP 309

Query: 175 ------------------------------------------------NLDKNPGEYQAS 186
                                                           N +KN G+ Q  
Sbjct: 310 SSVKATLLGWDGSYVGKKRREVWRVGPLCIFWTVGKASFLTQSLHLQLNPEKNHGDLQGF 369

Query: 187 HRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPI---SSSVAP 243
            RE R  S+SAPI  E K DP+ERIR   QSS R+  TYVLP P+ AK      +S+  P
Sbjct: 370 SREPRAGSYSAPIIAE-KSDPSERIRT--QSSTRKLHTYVLPIPVGAKSSTPSRTSNSVP 426

Query: 244 RTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PP 302
           RTRP++  G T NL HSSPLE KK ++D GD H+S  +  ++QS+LKES+SNNA+ R PP
Sbjct: 427 RTRPTSLHGGTRNLWHSSPLEPKKHEKDSGDDHMSGSTISEAQSVLKESNSNNAAIRLPP 486

Query: 303 PLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGL 362
           PL +GL+LPQLDTLN+SDTKK+K  A SGPLT K  S+KP LSSSGPI   ELPQ+VSGL
Sbjct: 487 PLAEGLSLPQLDTLNTSDTKKVKRLAFSGPLTGKPWSTKPVLSSSGPIAPAELPQLVSGL 546

Query: 363 LSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLM 422
           LS  P+PQ  +SP++SP+ASPPLVSSPRI+ELHELPRPP + ATKPA+  GLVGHSAPL+
Sbjct: 547 LSRVPIPQPSSSPKISPSASPPLVSSPRINELHELPRPPVSLATKPARFPGLVGHSAPLI 606

Query: 423 FRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEK 482
            RN E ++T+K  SMAS  ASPLP PP  V RS+SIPSSSQ+A ALHV+K LES +  +K
Sbjct: 607 SRN-ELSATSKTSSMASNAASPLPTPP--VPRSYSIPSSSQRATALHVTKVLESSQNPDK 663

Query: 483 SEGVSSPPLTPISLANVKPVSIVSEVSSQSAQ 514
           +E V SPPLTPISL+N KP S +SEV+SQS Q
Sbjct: 664 AEEVGSPPLTPISLSNSKPTSTISEVASQSGQ 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129244|ref|XP_002328926.1| predicted protein [Populus trichocarpa] gi|222839356|gb|EEE77693.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 303/491 (61%), Positives = 358/491 (72%), Gaps = 25/491 (5%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY++AQQ++KG+SK GK ES +LQQ L++A +EY+EEA LCVFRLKSL
Sbjct: 130 MKRQCDEKRNVYEYMVAQQKDKGRSKGGKDESTTLQQ-LRSAREEYDEEATLCVFRLKSL 188

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDN---D 117
           KQGQ RSLLTQ ARHHAAQLNFF+KG KSLE V+ HVRL+ E QHIDY FSGLED+   D
Sbjct: 189 KQGQSRSLLTQVARHHAAQLNFFQKGLKSLETVEPHVRLITEHQHIDYHFSGLEDDGRED 248

Query: 118 GED-GEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNL 176
           GED GED     E  ELSFDYR N QG   VS +R SMEVD+ D+SFPQA   EN E+N 
Sbjct: 249 GEDYGEDVDDTYEGRELSFDYRANNQG-HAVSAARNSMEVDEEDLSFPQAPAAENVELNP 307

Query: 177 DKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVP 236
           DK PG +    RE RG S SAPIFPERK DP ERIRQ+Q+SS R+ +TYVLPTP+DAK  
Sbjct: 308 DKTPGGFHFPIREPRGGSHSAPIFPERKPDPVERIRQIQKSS-RKSNTYVLPTPVDAKGV 366

Query: 237 ISSSVA---PRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
           ISS  +   P TR  + SGRT+ LSHSSPLEQKK ++D GD HL E +  K +S  KES+
Sbjct: 367 ISSRASGSVPNTRQIDISGRTHYLSHSSPLEQKKNEKDSGDGHLPEFTPSKERSGHKESN 426

Query: 294 SNNASTR-PPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPAL-SSSGPIT 351
           + NAST+ P PL  G++ PQLD  N+SD KKIK Q+ SGP+TSK  S K  L SSSGPI+
Sbjct: 427 NPNASTQLPRPLVGGISFPQLDVYNASDNKKIKRQSFSGPITSKPWSMKLGLSSSSGPIS 486

Query: 352 YTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKS 411
            TEL Q            +  TSP+VSP+ SPPLVSSPRISELHELPRPP   A K AKS
Sbjct: 487 ATELSQ------------EPSTSPKVSPSTSPPLVSSPRISELHELPRPPGNLAAKAAKS 534

Query: 412 SGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS 471
            G +GHSAPL+ RN E + TNK  S A+  ASPLP PPL+V  SFSIPS S + M++HVS
Sbjct: 535 LGPIGHSAPLV-RNPELSGTNKISSGAANLASPLPTPPLMVPTSFSIPSISPRTMSVHVS 593

Query: 472 KFLESPKVVEK 482
           K L S ++++K
Sbjct: 594 KLLVSSQLLDK 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055789|ref|XP_002298654.1| predicted protein [Populus trichocarpa] gi|222845912|gb|EEE83459.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 322/522 (61%), Positives = 383/522 (73%), Gaps = 15/522 (2%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY++AQQ++KG+SK GK ES++LQQ LQ A +EY+EEA LCVFRLKSL
Sbjct: 130 MKRQCDEKRNVYEYMVAQQKDKGRSKGGKDESITLQQ-LQTAREEYDEEATLCVFRLKSL 188

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLED----N 116
           KQGQ RSLLTQAARHHAAQLNFF+KG KSLE V+ HVRLV E QHIDY FSGLE     +
Sbjct: 189 KQGQSRSLLTQAARHHAAQLNFFQKGLKSLETVEPHVRLVTEHQHIDYHFSGLESDGRED 248

Query: 117 DGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNL 176
             +DGED    NE  ELSFDYR+N QG  VVS +R SMEV    ++F     +   ++N 
Sbjct: 249 GEDDGEDGGDTNERRELSFDYRENNQGNAVVSAARGSMEVSASYLAFKICIFL---QLNP 305

Query: 177 DKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVP 236
           DKN G +Q   RE RG S SAPI PERK DP ERIRQ+QQ+S R+ +TYVLPTPIDAK  
Sbjct: 306 DKNHGGFQFPSREPRGGSHSAPIVPERKPDPVERIRQMQQAS-RKSNTYVLPTPIDAKGA 364

Query: 237 ISSSVA---PRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
           ISS  +   P TR ++ SGR +NL HSSPLEQKK ++D GD HLS+ + LK++S  KES+
Sbjct: 365 ISSRTSCSVPNTRQTDISGRAHNLWHSSPLEQKKNEKDSGDGHLSDFTALKARSGHKESN 424

Query: 294 SNNASTR-PPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITY 352
           + NAST+ PPPL  G++ PQLD  N+SD KK K Q+ SGP+TSK  S KP LSSSGPI+ 
Sbjct: 425 NPNASTQLPPPLVGGISYPQLDVHNASDYKKNKWQSFSGPITSKPWSMKP-LSSSGPISS 483

Query: 353 TELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSS 412
           TEL Q VSG+LS    PQ  +SP+VSP+ SPPLVSSP+ISELHELPRPP   A K AK S
Sbjct: 484 TELSQQVSGMLSRGANPQPSSSPKVSPSTSPPLVSSPKISELHELPRPPGNLAAKAAKPS 543

Query: 413 GLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSK 472
            L+GHSAPL  RN E   T+K  + A+  ASPLP PPLIV RSFSIPSSSQ+AM +HVSK
Sbjct: 544 VLIGHSAPLS-RNPELAGTSKISTGAANLASPLPPPPLIVPRSFSIPSSSQRAMTVHVSK 602

Query: 473 FLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQ 514
            L+S +V  K   V SPPLTP+SLAN++P   +SE    S Q
Sbjct: 603 LLDSSQVSYKPGEVDSPPLTPMSLANMRPAPAISEPVPHSGQ 644

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560450|ref|XP_003548505.1| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 299/541 (55%), Positives = 375/541 (69%), Gaps = 62/541 (11%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKR+V EY++AQQ+EKGKSKS KGES +LQQ LQAA+ EYE+EA+LC FRLKSL
Sbjct: 131 MKRQCDEKRDVYEYMIAQQKEKGKSKSAKGESFTLQQ-LQAAHAEYEDEAKLCAFRLKSL 189

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL----EDN 116
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAVD HVR++AERQHIDYQFSGL     +N
Sbjct: 190 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVDPHVRMIAERQHIDYQFSGLEDDGGEN 249

Query: 117 DGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDV--------------- 161
           D  D  + +   E GELSFDYR NKQG  +VSTS  S EV ++                 
Sbjct: 250 DNNDDGNDFDVIEGGELSFDYRANKQGPYIVSTSPNSAEVGNLYYSKLECCHFILVAVEE 309

Query: 162 ---SFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSS 218
              S+ +AST E AE +L+KN G+++ S+  R G S+SAPI  E+K DPAE++RQ+   S
Sbjct: 310 SGRSYIRASTPETAETSLEKNQGDFKVSN--RVGGSYSAPILAEKKFDPAEKVRQLLAFS 367

Query: 219 ARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLS 278
           A + + YVLPTP++ K   +SS APRT   + SG  +NL HSSPL++KK ++D  D+ LS
Sbjct: 368 AAKSNAYVLPTPVNIKETKTSS-APRT---SASGSLHNLWHSSPLDEKKNEKDV-DSKLS 422

Query: 279 EHSGLKSQSLLKESDSNNASTRPP-PLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKS 337
           E +  ++ S+LKESDS+ + T+ P P  DGL LPQ+D L++SDTKKIK QA SGPLT+K 
Sbjct: 423 EPTIPRAHSVLKESDSDTSYTQLPRPSADGLLLPQVDFLSASDTKKIKRQAFSGPLTNKP 482

Query: 338 SSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHEL 397
            S KP                VSG  S  PVPQ  +SP+ SP ASPPLVSSPRISELHEL
Sbjct: 483 LSVKP----------------VSGGFSRLPVPQP-SSPKASPNASPPLVSSPRISELHEL 525

Query: 398 PRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFS 457
           PRPP   ++KP      VGHSAPL+ +N E   TNK PS+    ASPLP PP  VSRSFS
Sbjct: 526 PRPPGNQSSKPR-----VGHSAPLVLKNPEAAMTNKFPSVVLRAASPLPTPP--VSRSFS 578

Query: 458 IPSSSQKAMALHVS--KFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQN 515
           IPSS Q+ +AL+VS  K+L++P+V +  + V SPPLTP+S    +  S +S+++S S++ 
Sbjct: 579 IPSSGQRVVALNVSNTKYLDTPQVSKVDKAV-SPPLTPMS----QRASNISDLASHSSEI 633

Query: 516 Q 516
           Q
Sbjct: 634 Q 634

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508303|ref|XP_003624440.1| hypothetical protein MTR_7g083240 [Medicago truncatula] gi|355499455|gb|AES80658.1| hypothetical protein MTR_7g083240 [Medicago truncatula]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 295/525 (56%), Positives = 373/525 (71%), Gaps = 43/525 (8%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKR V EY++AQQ+EKGKSKSGKGE+++  Q L+AA+DEYEEEA LC FRLKSL
Sbjct: 132 MKRQCDEKREVYEYMIAQQKEKGKSKSGKGENIT-SQHLKAAHDEYEEEATLCAFRLKSL 190

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGE- 119
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAV+ HVR+VAE QHIDYQFSGLED+DGE 
Sbjct: 191 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVEPHVRMVAELQHIDYQFSGLEDDDGEG 250

Query: 120 ----DG-EDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEV 174
               DG E  Y A E GELSF+YR NK     V TS  S EV++ D S  +AST E AE 
Sbjct: 251 SFEYDGNEYEYEATEGGELSFNYRSNKD----VPTSPNSAEVEESDRSNIRASTTETAET 306

Query: 175 NLDKNPGEYQASHRE-RRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDA 233
           +LDK+  +++ S+R+  R SS+SAPIF E+K DPAE++RQ+  SSA +P+ YVLP P++ 
Sbjct: 307 SLDKSHVDFKVSNRDPPRVSSYSAPIFAEKKFDPAEKVRQLLSSSAAKPNAYVLPLPVNI 366

Query: 234 KVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
           K    +  APR    + S  +++L HSSPL++KK  +D+ D  LSE   +   S+LKES+
Sbjct: 367 K---ETKTAPRL---SASASSHDLWHSSPLDEKKNGKDFADGKLSE-PAIPRVSILKESN 419

Query: 294 SNNASTR-PPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITY 352
           S+ +S + P P  +G +LPQ+D  N+SD KKIK  A SGPLT+K  S KP          
Sbjct: 420 SDTSSAQLPRPSTEGQSLPQVDIFNASDHKKIKRHAFSGPLTNKPLSVKP---------- 469

Query: 353 TELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSS 412
                 VSG  S  P+PQ  +SP+ SP ASPPLVSSPRISELHELPRPP    +K  KSS
Sbjct: 470 ------VSGGFSRLPMPQP-SSPKASPGASPPLVSSPRISELHELPRPPGNQTSKATKSS 522

Query: 413 GLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS- 471
             VGHSAPL  RN EH +TNK P + S +ASPLP PP+ VSRSFSIPSSSQ+A+ ++V+ 
Sbjct: 523 R-VGHSAPLGLRNPEHPTTNKFPPVVSSSASPLPTPPITVSRSFSIPSSSQRAVVINVAN 581

Query: 472 KFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQ 516
           K+L + ++ EK E  +SPPLTP+S    +  S +S+++S+S++ Q
Sbjct: 582 KYLHTHQIPEKVEEAASPPLTPLS----QRASALSDLASRSSEIQ 622

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570208|ref|XP_003553282.1| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 295/523 (56%), Positives = 371/523 (70%), Gaps = 45/523 (8%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKRNV EY++AQQ+EKGKSKSGKGES +LQQ LQAA+ EYEEEA LC FRLKSL
Sbjct: 133 MKRQCDEKRNVYEYMIAQQKEKGKSKSGKGESFTLQQ-LQAAHAEYEEEATLCAFRLKSL 191

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGED 120
           KQGQ RSLLTQAARHHAAQLNFFRKG KSLEAV+ HVR++A RQHIDYQFSGLED+ GE 
Sbjct: 192 KQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVEPHVRMIAVRQHIDYQFSGLEDDGGES 251

Query: 121 GEDSYYAN----EAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNL 176
             +    +    E GELSFDYR NKQG  +VSTS  + EV++   S+ +AST E AE +L
Sbjct: 252 DNNDDGNDFDIIEGGELSFDYRANKQGPYIVSTSPNTAEVEESGCSYVRASTPETAETSL 311

Query: 177 DKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVP 236
           DKN G+++ S+R    SS+SAPI  E+K DPAE++RQ+  SSA + + YVLPTP++ K  
Sbjct: 312 DKNQGDFKVSNRV---SSYSAPILAEKKFDPAEKVRQLLASSAAKSNAYVLPTPVNIKET 368

Query: 237 ISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNN 296
            +SS AP     + SG  +NL HSSPL++KK ++D  D+ LSE +  ++ S+LKES+S+ 
Sbjct: 369 KTSS-APHI---SASGSLHNLWHSSPLDEKKNEKDV-DSKLSEPTIPRAHSVLKESNSDT 423

Query: 297 ASTRPP-PLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTEL 355
             T+ P P  DGL+ PQ+D  +++DTKKIK QA SGPLT+K  S KP             
Sbjct: 424 TYTQLPRPSADGLSPPQVDLFSATDTKKIKRQAFSGPLTNKPLSVKP------------- 470

Query: 356 PQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLV 415
              VSG     PVPQ  +SP+ SP ASPPLVSSPRISELHELPRPP   ++KP      V
Sbjct: 471 ---VSGGFPRLPVPQ-PSSPKASPNASPPLVSSPRISELHELPRPPGNQSSKPR-----V 521

Query: 416 GHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS--KF 473
           GHSAPL+ +N E   TNK PS+    ASPLP PP  VSRSFSIPSS Q+ +AL+VS  K+
Sbjct: 522 GHSAPLVLKNPEAAMTNKFPSVVFSAASPLPTPP--VSRSFSIPSSGQRVVALNVSNTKY 579

Query: 474 LESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQ 516
           L++P+V +  + V SPPLTP+S    +  S +S+++S S++ Q
Sbjct: 580 LDTPQVSKVDKAV-SPPLTPMS----QRASNISDLASHSSEIQ 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088724|emb|CBI38174.3| unnamed protein product [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/514 (50%), Positives = 346/514 (67%), Gaps = 14/514 (2%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKR+V EY++ +QREKG+S+SG+GE+ S   Q+QAA DEY+EEA L VFRLKSL
Sbjct: 133 MKRQCDEKRDVYEYMITRQREKGRSRSGRGETFS-SHQVQAACDEYDEEATLFVFRLKSL 191

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE-DNDGE 119
           KQGQ RSLLTQA+RHHAAQL+FFRK  KSLE ++ HV+LV E+QHIDY+FSGLE D+  +
Sbjct: 192 KQGQSRSLLTQASRHHAAQLSFFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDD 251

Query: 120 DGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKN 179
             +D  Y    G+LSFDY       D VST+R SME+D  D++FPQ +T+++ + NLDK+
Sbjct: 252 GEDDDDYDGHDGDLSFDYGQIDHEQDFVSTARNSMELDQEDLTFPQVATMDSVKENLDKS 311

Query: 180 PGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAK--VPI 237
             +  A + E R  S SAP+F E+K D A  +R+++  S R+  TYVLPTP D K   P 
Sbjct: 312 YVDSFAINSESRKISQSAPLFAEKKFDSA-WMREMRPLSTRKLRTYVLPTPDDTKSSAPT 370

Query: 238 SSSVAPRTR--PSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSN 295
            S  +P +R  P++ SGR +NL HSSPLE K E +  GD  + E + + +QS+LKES++N
Sbjct: 371 RSD-SPDSRPIPTSLSGRPHNLWHSSPLEPKYE-KILGDDKVFESTAMNAQSVLKESNTN 428

Query: 296 NAST-RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTE 354
           + S+  PPPL DGL    +++   SDTKK+K  A SGPLT    S+KP LS+S P+    
Sbjct: 429 HVSSGLPPPLVDGLPFRMINSSVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVSVT 488

Query: 355 LPQIVSG--LLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSS 412
            PQ+ SG  L S  P   + +SP      + P +SSP+I+ELHELPRPP++   KP++ S
Sbjct: 489 QPQLFSGPLLRSQMPHLSSSSSPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSRPS 548

Query: 413 GLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSK 472
            L+GHSAPL+      ++TNK   + S TAS LP+P   V RS S PSS QK     VS 
Sbjct: 549 SLIGHSAPLVASGPNLSATNK--LVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRVSG 606

Query: 473 FLESPKVVEKSEGVSSPPLTPISLANVKPVSIVS 506
             E+P+  E +E V+SPPLTPISL+N++P S  S
Sbjct: 607 PSEAPQNSEMAENVTSPPLTPISLSNIQPASTSS 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425164|ref|XP_002263726.1| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 260/516 (50%), Positives = 347/516 (67%), Gaps = 16/516 (3%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           MKRQCDEKR+V EY++ +QREKG+S+SG+GE+ S   Q+QAA DEY+EEA L VFRLKSL
Sbjct: 133 MKRQCDEKRDVYEYMITRQREKGRSRSGRGETFS-SHQVQAACDEYDEEATLFVFRLKSL 191

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE-DNDGE 119
           KQGQ RSLLTQA+RHHAAQL+FFRK  KSLE ++ HV+LV E+QHIDY+FSGLE D+  +
Sbjct: 192 KQGQSRSLLTQASRHHAAQLSFFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDD 251

Query: 120 DGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEV--NLD 177
             +D  Y    G+LSFDY       D VST+R SME+D  D++FPQ +T+++ ++  NLD
Sbjct: 252 GEDDDDYDGHDGDLSFDYGQIDHEQDFVSTARNSMELDQEDLTFPQVATMDSVKLQENLD 311

Query: 178 KNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAK--V 235
           K+  +  A + E R  S SAP+F E+K D A  +R+++  S R+  TYVLPTP D K   
Sbjct: 312 KSYVDSFAINSESRKISQSAPLFAEKKFDSA-WMREMRPLSTRKLRTYVLPTPDDTKSSA 370

Query: 236 PISSSVAPRTR--PSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESD 293
           P  S  +P +R  P++ SGR +NL HSSPLE K E +  GD  + E + + +QS+LKES+
Sbjct: 371 PTRSD-SPDSRPIPTSLSGRPHNLWHSSPLEPKYE-KILGDDKVFESTAMNAQSVLKESN 428

Query: 294 SNNAST-RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITY 352
           +N+ S+  PPPL DGL    +++   SDTKK+K  A SGPLT    S+KP LS+S P+  
Sbjct: 429 TNHVSSGLPPPLVDGLPFRMINSSVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVS 488

Query: 353 TELPQIVSG--LLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAK 410
              PQ+ SG  L S  P   + +SP      + P +SSP+I+ELHELPRPP++   KP++
Sbjct: 489 VTQPQLFSGPLLRSQMPHLSSSSSPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSR 548

Query: 411 SSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHV 470
            S L+GHSAPL+      ++TNK   + S TAS LP+P   V RS S PSS QK     V
Sbjct: 549 PSSLIGHSAPLVASGPNLSATNK--LVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRV 606

Query: 471 SKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVS 506
           S   E+P+  E +E V+SPPLTPISL+N++P S  S
Sbjct: 607 SGPSEAPQNSEMAENVTSPPLTPISLSNIQPASTSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	517
TAIR|locus:2088389	614	AT3G26910 "AT3G26910" [Arabido	0.522	0.439	0.423	3.2e-79
TAIR|locus:2051058	623	AT2G33490 "AT2G33490" [Arabido	0.736	0.611	0.406	2.7e-61
TAIR|locus:2163061	586	AT5G41100 "AT5G41100" [Arabido	0.516	0.455	0.430	1.6e-53
ASPGD|ASPL0000012800	961	chiA [Emericella nidulans (tax	0.475	0.255	0.247	0.00061

TAIR|locus:2088389 AT3G26910 "AT3G26910" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
 Identities = 122/288 (42%), Positives = 164/288 (56%)

Query:     1 MKRQCDEKRNVCEYVMAQQRXXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSL 60
             MK+QCD KRNV E  + +++              +  + + A  E+ +EA +C+FRLKSL
Sbjct:   134 MKQQCDGKRNVYEMSLVKEKGRPKSSKGERH---IPPESRPAYSEFHDEATMCIFRLKSL 190

Query:    61 KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXXXXXX 120
             K+GQ RSLL QA RHH AQ+  F  G KSLEAV+ HV++  E+QHID   S         
Sbjct:   191 KEGQARSLLIQAVRHHTAQMRLFHTGLKSLEAVERHVKVAVEKQHIDCDLSVHGNEMEAS 250

Query:   121 XXXS---YYANEAGELSFDYRDNKQGLDVVSTSRK-SMEVDDVDVSFPQASTVENAEVNL 176
                     Y N  GELSFDYR N+Q ++  S S   + ++DD D+SFP+ ST   A VN 
Sbjct:   251 EDDDDDGRYMNREGELSFDYRTNEQKVEASSLSTPWATKMDDTDLSFPRPSTTRPAAVNA 310

Query:   177 DKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKV- 235
             D    EY  S R++  SS SAP+FPE+K D +ER+RQ   S     + YVLPTP D++  
Sbjct:   311 DHRE-EYPVSTRDKYLSSHSAPLFPEKKPDVSERLRQANPSF----NAYVLPTPNDSRYS 365

Query:   236 -PISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSG 282
              P+S ++ PR  P+N S    N+ HSSPLE  K  +D  DA  +   G
Sbjct:   366 KPVSQALNPR--PTNHSAG--NIWHSSPLEPIKSGKDGKDAESNSFYG 409

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2051058 AT2G33490 "AT2G33490" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 175/430 (40%), Positives = 234/430 (54%)

Query:     1 MKRQCDEKRNVCEYVMAQQRXXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSL 60
             M+R CDEKRNV E ++ +QR             S  QQLQ A+D+YE E  L VFRLKSL
Sbjct:   132 MQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSL 190

Query:    61 KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXXXXXX 120
             KQGQ RSLLTQAARHHAAQL FF+K   SLE VD HV++V E QHIDY FS         
Sbjct:   191 KQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDD 250

Query:   121 XXXSYY-----ANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVN 175
                +        ++ GELSF+YR N +  D  S++  S E+ + D++FPQ      A+ N
Sbjct:   251 EIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIGGPYTAQEN 310

Query:   176 LDKNPGEYQASH---RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTYVLPTPI 231
              +   G Y+ SH   R+ R  S SAP+FPE R   P+E++ +++ +  R+ +TY LPTP+
Sbjct:   311 EE---GNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPV 367

Query:   232 DAKVPISSSVAPRTR---PSNPSGR-TYNLSHSSPLEQKKEDRDYGDAHLSEHS--GLKS 285
             +     SS+ +P  +    SNP+   T  + +SSPLE +      G A +S  S   LK 
Sbjct:   368 ETTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPLETR------GPAKVSSRSMVALKE 421

Query:   286 QSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQXXXXXXXXXXXXXXXXXX 345
             Q +L+ES+ N  S  PPPL DGL   +L TL         T                   
Sbjct:   422 Q-VLRESNKNT-SRLPPPLADGLLFSRLGTLKRRSFSGPLTSKPLPNK------------ 467

Query:   346 XXXPITYTELPQIVSGLLSHAPVPQTKTSPRVS--PTASPPLVSSPRISELHELPRPPNA 403
                P++ T    + SG +   PV +    P+VS  PTASP  VS+P+ISELHELPRPP  
Sbjct:   468 ---PLSTTS--HLYSGPIPRNPVSKL---PKVSSSPTASPTFVSTPKISELHELPRPPPR 519

Query:   404 FATKPAKSSG 413
              +TK ++  G
Sbjct:   520 SSTKSSRELG 529

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2163061 AT5G41100 "AT5G41100" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 121/281 (43%), Positives = 173/281 (61%)

Query:     1 MKRQCDEKRNVCEYVMAQQRXXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSL 60
             MK+QC+EKR+V ++++ +                +++QL+ A DE ++EA LC+FRLKSL
Sbjct:   133 MKQQCEEKRDVVKHMLMEHVKDKVQVKGTKGERLIRRQLETARDELQDEATLCIFRLKSL 192

Query:    61 KQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXX---X 117
             K+GQ RSLLTQAARHH AQ++ F  G KSLEAV+ HVR+ A+RQHID   S         
Sbjct:   193 KEGQARSLLTQAARHHTAQMHMFFAGLKSLEAVEQHVRIAADRQHIDCVLSDPGNEMDCS 252

Query:   118 XXXXXXSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLD 177
                       N  GELSFDY  ++Q ++V+ST   SM++DD D+SF + S   +A VN D
Sbjct:   253 EDNDDDDRLVNRDGELSFDYITSEQRVEVISTPHGSMKMDDTDLSFQRPSPAGSATVNAD 312

Query:   178 KNPGEYQASHRERRGSSFSAPIFPERKIDPAER-IRQVQQSSARQPSTYVLPTPIDAKVP 236
                 E+  S+R+RR SS SAP+FP++K D A+R +RQ+  S+    + Y+LPTP+D+K  
Sbjct:   313 PRE-EHSVSNRDRRTSSHSAPLFPDKKADLADRSMRQMTPSA----NAYILPTPVDSK-- 365

Query:   237 ISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHL 277
              SS +   T+P   +  + NL HSSPLE  K      +++L
Sbjct:   366 -SSPIF--TKPVTQTNHSANLWHSSPLEPIKTAHKDAESNL 403

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ASPGD|ASPL0000012800 chiA [Emericella nidulans (taxid:162425)]

 Score = 122 (48.0 bits), Expect = 0.00061, P = 0.00061
 Identities = 65/263 (24%), Positives = 100/263 (38%)

Query:   193 SSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLP-TPIDAKVPISSSVAP--RTRPSN 249
             SS +  + P  K  P+E     + SS    ST V+  TP + K P SSS  P   + P  
Sbjct:   413 SSTTETVTPSPKPSPSESSTTSETSSLPSTSTPVVSETPSETKTPTSSSAPPLSSSSPVG 472

Query:   250 PSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLA 309
              S  T + S S+P E          +  S H    + S   E+    +ST  P      +
Sbjct:   473 GSSSTASSSTSTPSETPSASSTRAVSETSTHISTSTSSG-PETSLTGSSTSVPATSS--S 529

Query:   310 LPQLDTLNSSDTKKIKTQXXXXXXXXXXXXXXXXXXXXXPITYTELPQIVSGLLSHAPVP 369
             +P    ++ S T  I                          T T+  +  + + +H+   
Sbjct:   530 VPS-SAISPSSTPVISETPRPPVTSSSSSTFVSSTS-----TSTDCSESSTAIGTHSSSS 583

Query:   370 QTKTSPRVSPTASPPLVSSPRISE-LHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEH 428
              ++T    +P ASP   +SP  ++ L   P P ++ +T    +S L   S P        
Sbjct:   584 ISETPSASTPAASPS--TSPETTKTLTVFPTPGSSVSTGTTSASTL-SSSVPATSGGHTE 640

Query:   429 TSTNKNPSMASYTASPLPIPPLI 451
             TST  + S A+ T S     PLI
Sbjct:   641 TST-VSTSSANQTPSASTSKPLI 662


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      517       462   0.00096  118 3  11 23  0.48    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  233 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  52.07u 0.16s 52.23t   Elapsed:  00:00:03
  Total cpu time:  52.07u 0.16s 52.23t   Elapsed:  00:00:03
  Start:  Tue May 21 00:22:29 2013   End:  Tue May 21 00:22:32 2013

GO:0004568 "chitinase activity" evidence=ISS;RCA

GO:0006032 "chitin catabolic process" evidence=ISS;RCA

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001896 "autolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	517
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	6e-09

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLK 58
            +++ D+ R   +Y  A+++ K   K  K  S     +++LQ A ++YEE     +  L 
Sbjct: 99  RRKKLDKARL--DYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLN 156

Query: 59  SLKQGQ---YRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 96
            L++ +   + SLL         Q  FF++  K LE +  +
Sbjct: 157 KLEEKRKELFLSLLLSFIEA---QSEFFKEVLKILEQLLPY 194

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	517
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.91
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.65
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	98.2
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	97.22
smart00721	239	BAR BAR domain.	95.27
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	90.08
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	89.6
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	89.33
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	85.07
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	84.15
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	83.6
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	83.09
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	82.05

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=99.91  E-value=8.2e-25  Score=209.57  Aligned_cols=96  Identities=19%  Similarity=0.300  Sum_probs=93.2

Q ss_pred             CchhhhhHHHHHHHHHHHHHhhcCCCCCCCCccc---------hHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS---------LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQ   71 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s---------~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQ   71 (517)
                      ||+|||++|+.||+|++ +.||++.|++|++.++         .+ ||++++..||.+|+.|||++++||+||.++||++
T Consensus       109 ~KK~fdK~~~dyE~~~~-k~ek~~r~~~K~~~~~~~e~~~~E~ae-~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~  186 (215)
T cd07642         109 LKKPFDKAWKDYETKVT-KIEKEKKEHAKMHGMIRTEISGAEIAE-EMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQN  186 (215)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhhhhccCCccccchhccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            89999999999999996 9999999999999986         67 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhhccchhhhhhHHH
Q 010143           72 AARHHAAQLNFFRKGFKSLEAVDTHVR   98 (517)
Q Consensus        72 AARHHAAQL~fFrkgLKsLEavEPHVk   98 (517)
                      +++||+||++||++|+|+||+||||++
T Consensus       187 l~~~~~AQ~tfF~qG~k~le~l~p~~~  213 (215)
T cd07642         187 LIKYFHAQCNFFQDGLKAVETLKPSIE  213 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=99.65  E-value=1.4e-16  Score=152.11  Aligned_cols=96  Identities=17%  Similarity=0.246  Sum_probs=90.2

Q ss_pred             CchhhhhHHHHHHHHHHHHHhhcCCCCCCCCcc---------chHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV---------SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQ   71 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~---------s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQ   71 (517)
                      ||++||.+++.||.+. .+.+|+|.+.+|++.+         +.+ ||+.++..|++++..|||+|+.|+++|..++|++
T Consensus       109 ~KK~fdK~s~~ye~~~-~k~~k~Kk~~~~~~~~~r~e~~~~e~~~-~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~  186 (215)
T cd07604         109 LKKPFDKAWKDYETKA-SKIEKEKKQLAKEAGMIRTEITGAEIAE-EMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQH  186 (215)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHhccchhhhhhhhcchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999996 7889999999977643         466 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHhhccchhhhhhHHH
Q 010143           72 AARHHAAQLNFFRKGFKSLEAVDTHVR   98 (517)
Q Consensus        72 AARHHAAQL~fFrkgLKsLEavEPHVk   98 (517)
                      ++++|.||++||+.|++.||.+|||++
T Consensus       187 ll~~~~Aq~~fF~~G~~ll~~l~p~~~  213 (215)
T cd07604         187 LVEYYHAQNSYFQDGLKVIEHFRPYIE  213 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=98.20  E-value=2.2e-06  Score=73.50  Aligned_cols=93  Identities=23%  Similarity=0.267  Sum_probs=73.6

Q ss_pred             CchhhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccch---hhHHHHHHHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQY---RSLLTQAARHHA   77 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~---rSLLTQAARHHA   77 (517)
                      ++++||.+|.-|+.+++.+..-.+.+..-++-...+++++.|+++|+.-+..++..|..|.++..   ..+|++-+.+  
T Consensus        99 ~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~--  176 (194)
T cd07307          99 RRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEA--  176 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence            36789999999999998776544332111122345569999999999999999999999999986   6777766655  


Q ss_pred             HHHHhHHhhccchhhhhhH
Q 010143           78 AQLNFFRKGFKSLEAVDTH   96 (517)
Q Consensus        78 AQL~fFrkgLKsLEavEPH   96 (517)
                       |+.||.+|++.++.+.||
T Consensus       177 -q~~~~~~~~~~~~~l~~~  194 (194)
T cd07307         177 -QSEFFKEVLKILEQLLPY  194 (194)
T ss_pred             -HHHHHHhHHHHHHhhcCC
Confidence             999999999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=97.22  E-value=0.00085  Score=59.96  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=75.8

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLN   81 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~   81 (517)
                      ++.|+.||--|+..+..+ +|.+.+.++.+.   +++++.|..+|+.-...++-.|-.|-.....-|.+.-..--.+|+.
T Consensus       137 ~kkr~~~~ldyd~~~~k~-~k~~~~~~~~~~---~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~  212 (229)
T PF03114_consen  137 IKKREKKRLDYDSARSKL-EKLRKKKSKSSK---EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQ  212 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHCHTTSSBTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHhhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999987544 455555555544   4599999999999999999999999887765555888888889999


Q ss_pred             hHHhhccchhhhhhHH
Q 010143           82 FFRKGFKSLEAVDTHV   97 (517)
Q Consensus        82 fFrkgLKsLEavEPHV   97 (517)
                      ||++++.-|+.|+|.+
T Consensus       213 ~~~~~~~~l~~l~~~l  228 (229)
T PF03114_consen  213 YFQQLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999999875

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>smart00721 BAR BAR domain

Probab=95.27  E-value=0.069  Score=49.42  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             hhhhhHHHHHHHHHHHH---HhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHH
Q 010143            3 RQCDEKRNVCEYVMAQQ---REKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ   79 (517)
Q Consensus         3 rQCDeKR~vYE~M~a~q---kEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQ   79 (517)
                      +.++.||--|+..++.+   +.+++. ..+-+-...+++|+.|.++|++-...++=.|..|-+...-.++.+=..-..||
T Consensus       141 kk~~~~~lDyD~~~~kl~~~~~~~~~-~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq  219 (239)
T smart00721      141 KKLERKLLDYDSARHKLKKAKKSKEK-KKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQ  219 (239)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccC-ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            45777888888887643   222221 11112333556899999999886666666666655555444555555678899


Q ss_pred             HHhHHhhccchhhhhhHH
Q 010143           80 LNFFRKGFKSLEAVDTHV   97 (517)
Q Consensus        80 L~fFrkgLKsLEavEPHV   97 (517)
                      +.||+.+.+.|+.|.+.+
T Consensus       220 ~~y~~~~~~~l~~l~~~l  237 (239)
T smart00721      220 LNFHRESYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999998865

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=90.08  E-value=0.66  Score=44.78  Aligned_cols=93  Identities=18%  Similarity=0.302  Sum_probs=68.8

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLN   81 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~   81 (517)
                      |+.-|.-.+-|+..++.+-.=.++|  ..|---...||.+++-.|+..+-=+|+.|..+..-+--.+|---..---||++
T Consensus       107 kk~Fdk~s~~yd~al~k~~~~~K~K--~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~t  184 (200)
T cd07603         107 KKHFEKISDDLDNALVKNAQAPRSK--PQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFT  184 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566777666443333333  22222333599999999999999999999998877777777777778889999


Q ss_pred             hHHhhccchhhhhhH
Q 010143           82 FFRKGFKSLEAVDTH   96 (517)
Q Consensus        82 fFrkgLKsLEavEPH   96 (517)
                      ||+.|.+-++.+||.
T Consensus       185 ff~qG~el~~dl~py  199 (200)
T cd07603         185 FFHQGYDLLEDLEPY  199 (200)
T ss_pred             HHHhHHHHHHhhcCc
Confidence            999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=89.60  E-value=1.2  Score=44.34  Aligned_cols=97  Identities=16%  Similarity=0.233  Sum_probs=72.5

Q ss_pred             CchhhhhHHHHHHHHHHHHH-hhc-CCCCCCCCc------cchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQR-EKG-KSKSGKGES------VSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQA   72 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~qk-EKG-rsk~~KgEs------~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQA   72 (517)
                      ||++-|.=.+-||+-+...- ||- ..|---.|.      -..+ .|.+.+-=||-.|-=+++-+.-|+--|--.+|.--
T Consensus       109 ~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~Eaa~-~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~l  187 (215)
T cd07641         109 LKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAEIAE-EMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNL  187 (215)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            46666767778888765221 221 123332331      2355 89999999999999999988888888878888777


Q ss_pred             HHHHHHHHHhHHhhccchhhhhhHHH
Q 010143           73 ARHHAAQLNFFRKGFKSLEAVDTHVR   98 (517)
Q Consensus        73 ARHHAAQL~fFrkgLKsLEavEPHVk   98 (517)
                      -.--=||.+||..|++.||.++|-++
T Consensus       188 l~~~hAq~tfFqqG~~~~~~l~py~k  213 (215)
T cd07641         188 IKYYHAQCNFFQDGLKTADKLKQYIE  213 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77778999999999999999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=89.33  E-value=0.86  Score=44.89  Aligned_cols=93  Identities=11%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCC-ccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGE-SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL   80 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgE-s~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL   80 (517)
                      |++-|--.+-|+..  ..|...-+|+.|+. ---..++|..++..|+..+-=+|+.|.-+..-+--.+|.--..---||+
T Consensus       113 kK~FDK~se~y~~a--leK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~  190 (207)
T cd07634         113 KKKFDKESEKYYSI--LEKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLF  190 (207)
T ss_pred             ccchhHHHhHHHHH--HHHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778888774  46777777776663 3334458999999999999999999988877777777776667777999


Q ss_pred             HhHHhhccchhhhhhH
Q 010143           81 NFFRKGFKSLEAVDTH   96 (517)
Q Consensus        81 ~fFrkgLKsLEavEPH   96 (517)
                      .||+.|..-|+.+||-
T Consensus       191 tff~qG~el~~dl~py  206 (207)
T cd07634         191 TFYHEGYELAQEFAPY  206 (207)
T ss_pred             HHHHhHHHHHHhhcCC
Confidence            9999999999999883

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=85.07  E-value=3.3  Score=41.40  Aligned_cols=96  Identities=16%  Similarity=0.252  Sum_probs=69.5

Q ss_pred             CchhhhhHHHHHHHHHHHH--HhhcCCCCC-----CCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQ--REKGKSKSG-----KGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAA   73 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~q--kEKGrsk~~-----KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAA   73 (517)
                      +|++-|.=.+-||.-+...  -.|++.|-.     -+|- +.+ -|+..+--||-.|-=+++-+.-|+--|--.+|.---
T Consensus       109 ~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eE-aae-~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Ll  186 (213)
T cd07640         109 SKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTD-TAE-DMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLI  186 (213)
T ss_pred             HHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHH-HHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHH
Confidence            4666677777888876532  122222222     2222 234 788888889888888888888887777778887777


Q ss_pred             HHHHHHHHhHHhhccchhhhhhHHH
Q 010143           74 RHHAAQLNFFRKGFKSLEAVDTHVR   98 (517)
Q Consensus        74 RHHAAQL~fFrkgLKsLEavEPHVk   98 (517)
                      .--=||.+||+.|+|.||.++|-++
T Consensus       187 sy~hAQ~~fFqqG~~~l~~l~pyik  211 (213)
T cd07640         187 KFFHAQHNFFQDGWKAAQNLGPFIE  211 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            7778999999999999999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=84.15  E-value=2.8  Score=41.85  Aligned_cols=78  Identities=15%  Similarity=0.279  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHHHHHHHHHhhhhhhhhhhcccc--ccchhhHHHHHHHHHHHHHHh
Q 010143            7 EKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDEYEEEARLCVFRLKSLK--QGQYRSLLTQAARHHAAQLNF   82 (517)
Q Consensus         7 eKR~vYE~M~a~qkEKGrsk~~KgEs~s--~q~QLqaA~~EY~EEAtLfvFRLKSLK--QGQ~rSLLTQAARHHAAQL~f   82 (517)
                      .||=-|.+.++++      ++.|.+.+-  .+++|+.|.+||++-+-+++=+++.++  ...+-+-|..   ==.|||.|
T Consensus       144 ~rRLdyD~~K~r~------~kAk~~~~~~~~e~elr~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~---lv~AQl~Y  214 (229)
T cd07616         144 NKRLDLDAAKTRL------KKAKVAEARAAAEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLND---FVEAQMTY  214 (229)
T ss_pred             HHHHHHHHHHHHH------hcCCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHH---HHHHHHHH
Confidence            4555666665544      333344332  366899999999988777777777777  3322222222   23689999


Q ss_pred             HHhhccchhhh
Q 010143           83 FRKGFKSLEAV   93 (517)
Q Consensus        83 FrkgLKsLEav   93 (517)
                      |++.-..|+.|
T Consensus       215 h~~~~e~L~~L  225 (229)
T cd07616         215 YAQCYQYMLDL  225 (229)
T ss_pred             HHHHHHHHHHH
Confidence            99988887765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=83.60  E-value=2.6  Score=40.90  Aligned_cols=90  Identities=19%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             hhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhH
Q 010143            5 CDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFF   83 (517)
Q Consensus         5 CDeKR~vYE~M~a~qkEKGrsk~~KgEs~-s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~fF   83 (517)
                      -|.-++-|+..++.   -...+..|...+ -...||.+++-.|+.-+-=+|+.|--+..-+--.+|.--..---||+.||
T Consensus       110 Fdk~se~yd~al~k---~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff  186 (200)
T cd07637         110 FDKVREDLEIALVK---NAQAPRHKPHEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFF  186 (200)
T ss_pred             HHHHHHHHHHHHHH---HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556665543   233442222111 11249999999999999989999988877666666666666677999999


Q ss_pred             HhhccchhhhhhHH
Q 010143           84 RKGFKSLEAVDTHV   97 (517)
Q Consensus        84 rkgLKsLEavEPHV   97 (517)
                      +.|..-|+.+||++
T Consensus       187 ~qG~el~~~~~py~  200 (200)
T cd07637         187 QQGYSLLHELDPYM  200 (200)
T ss_pred             HhHHHHHHhhcccC
Confidence            99999999999963

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=83.09  E-value=2.6  Score=41.94  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccc---cchhhHHHHHHHHHHHHHHh
Q 010143            6 DEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQ---GQYRSLLTQAARHHAAQLNF   82 (517)
Q Consensus         6 DeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQ---GQ~rSLLTQAARHHAAQL~f   82 (517)
                      ..||=-|.+.+++++   +.|+...+ +..+++|+.|.++|++=+-..+=+++-++.   .|-+.|..=    =+|||+|
T Consensus       143 e~rRLd~D~~k~r~~---kAk~~~~~-~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~l----v~AQl~Y  214 (229)
T cd07594         143 ENKRLDLDACKTRVK---KAKSAEAI-EQAEQDLRVAQSEFDRQAEITKLLLEGISSTHANHLRCLRDF----VEAQMTY  214 (229)
T ss_pred             HHHHHHHHHHHHHHh---hcCCccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH----HHHHHHH
Confidence            345667777766552   22222222 345559999999998765555555555544   455544322    2689999


Q ss_pred             HHhhccchhhh
Q 010143           83 FRKGFKSLEAV   93 (517)
Q Consensus        83 FrkgLKsLEav   93 (517)
                      |++....|+.|
T Consensus       215 h~q~~e~L~~l  225 (229)
T cd07594         215 YAQCYQYMDDL  225 (229)
T ss_pred             HHHHHHHHHHH
Confidence            99988888765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=82.05  E-value=3.6  Score=40.49  Aligned_cols=79  Identities=24%  Similarity=0.438  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhcccccc---chhhHHHHHHHHHHHHHHh
Q 010143            6 DEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNF   82 (517)
Q Consensus         6 DeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQG---Q~rSLLTQAARHHAAQL~f   82 (517)
                      +.||=-|.+.++.++..      |.+....+.+|+.|.++|++=.-.++=++..++.-   |-+.|..    ==.|||.|
T Consensus       124 e~rRLdyD~~ksk~~ka------k~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~----lv~AQl~Y  193 (215)
T cd07593         124 ESRRLAYDAALTKSQKA------KKEDSRLEEELRRAKAKYEESSEDVEARMVAIKESEADQYRDLTD----LLDAELDY  193 (215)
T ss_pred             HHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH----HHHHHHHH
Confidence            45666777776655432      22234566699999999997776666666666653   3333322    22589999


Q ss_pred             HHhhccchhhhh
Q 010143           83 FRKGFKSLEAVD   94 (517)
Q Consensus        83 FrkgLKsLEavE   94 (517)
                      |++....|+.|-
T Consensus       194 h~q~~e~L~~l~  205 (215)
T cd07593         194 HQQSLDVLREVR  205 (215)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	517
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 6e-11
 Identities = 51/397 (12%), Positives = 109/397 (27%), Gaps = 119/397 (29%)

Query: 13  EYVMAQQREKGKSKSGKGES-VSLQQQLQAANDEYEEEARLCVFR----------LKSLK 61
           +++M+  + + +  S      +  + +L   N  +   A+  V R          L  L+
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELR 148

Query: 62  QGQY----------RSLLT-QAARHHAAQLNFFRKGF-KSLEAVDTHVRLVAERQHIDYQ 109
             +           ++ +       +  Q     K F  +L+  ++   ++   Q + YQ
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 110 FSGLEDNDGEDGEDSYYAN---EAGELS--FDYRDNKQGL----DVVS------------ 148
                     D   +          EL      +  +  L    +V +            
Sbjct: 209 IDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 149 ---TSRKSMEVDDVDVSFPQASTVENAEVNLDKNPG-EYQAS----------HRERRGSS 194
              T+R     D +  +     ++++  + L  +                        + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 195 FSAPIFPERKIDPAERI---RQV---QQSSARQPSTYVLPT-------------PIDAKV 235
               I  E   D        + V   + ++  + S  VL               P  A +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 236 PI-----------------------SSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDY 272
           P                          S+  +     P   T ++  S  LE K +  + 
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISI-PSIYLELKVKLENE 442

Query: 273 GDAH--LSEHSGLKSQSLLKESDSNNASTRPPPLRDG 307
              H  + +H      ++ K  DS++    PP L D 
Sbjct: 443 YALHRSIVDH-----YNIPKTFDSDDLI--PPYL-DQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 52/406 (12%), Positives = 114/406 (28%), Gaps = 121/406 (29%)

Query: 129 EAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVS----FPQASTVENAEV-NLDKNPGEY 183
           E GE  + Y+      D++S    +  VD+ D       P+ S +   E+ ++  +    
Sbjct: 10  ETGEHQYQYK------DILSVFEDAF-VDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAV 61

Query: 184 QASHR-----ERRGSSFSAPIFPERKIDP-----AERIRQVQQSSARQPSTYVLPTPIDA 233
             + R       +        F E  +          I+  Q+  +     Y+       
Sbjct: 62  SGTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------- 113

Query: 234 KVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKK----EDRD------YGDAHLSEHSGL 283
                     R    N     YN+S   P  + +    E R        G       SG 
Sbjct: 114 ------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----GSG- 162

Query: 284 KSQSLLKESDSNNASTRPPPLRDGLALPQLD------TLNSSDTKK--IKTQASSGPLTS 335
           K+  +  +                    ++D       L + ++ +  ++          
Sbjct: 163 KT-WVALDV-----------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 336 KSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPL-----VSSPR 390
            + +S+   SS+  +    +   +  LL   P                 L     V + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-------------LLVLLNVQNAK 257

Query: 391 ISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPL 450
                       AF     K   L+               T +   +  + ++       
Sbjct: 258 AWN---------AFNLS-CKI--LL---------------TTRFKQVTDFLSAATTTHIS 290

Query: 451 IVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISL 496
           +   S ++  +  +  +L + K+L+        E +++ P   +S+
Sbjct: 291 LDHHSMTL--TPDEVKSL-LLKYLDCRPQDLPREVLTTNPRR-LSI 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	517
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	96.28
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	96.0
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	95.77
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	93.73
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	92.19
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	88.16

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=96.28  E-value=0.0095  Score=55.79  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ   79 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~--s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQ   79 (517)
                      |+.-|..|.-|+.+++.|..-.+.|  +.|..  ....+|.+++..|+.-+-=+++.|.-|+..+--.+|..--...-||
T Consensus       130 kk~fdk~~~~yd~al~k~~~~~k~k--~~e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~  207 (265)
T 2q12_A          130 KEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQ  207 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888888999888876655554  34432  3345999999999988877888888888766667888888888999


Q ss_pred             HHhHHhhccchh-hhhhHHHHHHh
Q 010143           80 LNFFRKGFKSLE-AVDTHVRLVAE  102 (517)
Q Consensus        80 L~fFrkgLKsLE-avEPHVk~vaE  102 (517)
                      +.||+.|.+.+. .+||+++-+..
T Consensus       208 ~~ff~~g~e~~~~~~~p~~~~l~~  231 (265)
T 2q12_A          208 ISFFKMGSENLNEQLEEFLANIGT  231 (265)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999994 99999987654

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=96.00  E-value=0.011  Score=58.45  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=77.2

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ   79 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s--~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQ   79 (517)
                      |+++|.-.+-|+.+++.|-.-.  |..+.|..-  ..+||.+++..|+.-+-=+++.|..|+..+..-+|..-....-||
T Consensus       153 kK~Fek~~~~Yd~~l~Ky~~~~--k~k~~~~~~~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~  230 (407)
T 4h8s_A          153 KDLFGLASNEHDLSMAKYSRLP--KKKENEKVKTEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQ  230 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC--STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888999999998875433  333333321  234899999999999999999999998777778888888889999


Q ss_pred             HHhHHhhccch-hhhhhHHHHHH
Q 010143           80 LNFFRKGFKSL-EAVDTHVRLVA  101 (517)
Q Consensus        80 L~fFrkgLKsL-EavEPHVk~va  101 (517)
                      ++||+.|...+ +.+|+.++.+.
T Consensus       231 ~~~f~~~~~~~~~~~~~~~~~l~  253 (407)
T 4h8s_A          231 INFFKKGAEMFSKRMDSFLSSVA  253 (407)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 56888876553

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=95.77  E-value=0.016  Score=56.96  Aligned_cols=98  Identities=15%  Similarity=0.230  Sum_probs=75.0

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ   79 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~--s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQ   79 (517)
                      |+..|..+.-|+.+++.|..-.+.|  +.|..  -.+.||.+++.+|+.-+-=+++.|-.|...+-..+|..-...=.||
T Consensus       130 kk~fek~~~~yd~al~k~~~~~k~k--~~e~~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~  207 (385)
T 2q13_A          130 KEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQ  207 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888889999888876554433  34332  2324899999999998888888888887666667777777777789


Q ss_pred             HHhHHhhccch-hhhhhHHHHHH
Q 010143           80 LNFFRKGFKSL-EAVDTHVRLVA  101 (517)
Q Consensus        80 L~fFrkgLKsL-EavEPHVk~va  101 (517)
                      ++||+.|...+ +.+||.++.+.
T Consensus       208 ~~ff~~g~~~~~~~~~~~~~~l~  230 (385)
T 2q13_A          208 ISFFKMGSENLNEQLEEFLANIG  230 (385)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 58888876554

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=93.73  E-value=0.089  Score=49.29  Aligned_cols=83  Identities=16%  Similarity=0.278  Sum_probs=60.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhH
Q 010143            4 QCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFF   83 (517)
Q Consensus         4 QCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~fF   83 (517)
                      .=+.+|--|.+++++++        |    ..+.+|+.|.++|++-...++-.|..|.+... ..|-+-..=-.|||.||
T Consensus       144 kle~~rLd~D~ak~k~~--------k----~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~~-e~l~~l~~~v~aQl~y~  210 (240)
T 2z0v_A          144 KLEGRRLDYDYKKKRVG--------K----IPDEEVRQAVEKFEESKELAERSMFNFLENDV-EQVSQLAVFIEAALDYH  210 (240)
T ss_dssp             HHHHHHHHHHHHHTTTT--------S----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--------c----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHH
Confidence            44667888888754442        2    12449999999999877777777777766532 23334445567999999


Q ss_pred             HhhccchhhhhhHHHH
Q 010143           84 RKGFKSLEAVDTHVRL   99 (517)
Q Consensus        84 rkgLKsLEavEPHVk~   99 (517)
                      ++|...|+.|.|.+..
T Consensus       211 ~~~~e~L~~l~~~l~~  226 (240)
T 2z0v_A          211 RQSTEILQELQSKLQM  226 (240)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998753

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=92.19  E-value=0.24  Score=46.71  Aligned_cols=83  Identities=17%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHHhH
Q 010143            4 QCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFF   83 (517)
Q Consensus         4 QCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~fF   83 (517)
                      .=+.||--|.++++.++        |    ..+++|+.|.++|++-....+=.|..|..-..- .+-+-.-=-.|||+||
T Consensus       160 kl~~~rLdyD~~k~k~~--------k----~~eeEle~A~~~fe~~~e~~~~~m~~l~~~e~e-~~~~L~~~v~aQl~y~  226 (256)
T 1zww_A          160 KLEGRRLDFGYKKKRQG--------K----IPDEELRQALEKFDESKEIAESSMFNLLEMDIE-QVSQLSALVQAQLEYH  226 (256)
T ss_dssp             HHHHHHHHHHHHHHTTT--------T----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--------c----ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHH
Confidence            34667888888765442        1    124477777777765544444444433322211 1123334457999999


Q ss_pred             HhhccchhhhhhHHHH
Q 010143           84 RKGFKSLEAVDTHVRL   99 (517)
Q Consensus        84 rkgLKsLEavEPHVk~   99 (517)
                      ++++..|+.|.|-+..
T Consensus       227 ~~~~e~L~~l~~~l~~  242 (256)
T 1zww_A          227 KQAVQILQQVTVRLEE  242 (256)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=88.16  E-value=2.2  Score=38.60  Aligned_cols=100  Identities=16%  Similarity=0.072  Sum_probs=62.0

Q ss_pred             hhhhHHHHHHHHHHHH---Hhhc-CCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHH
Q 010143            4 QCDEKRNVCEYVMAQQ---REKG-KSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ   79 (517)
Q Consensus         4 QCDeKR~vYE~M~a~q---kEKG-rsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQ   79 (517)
                      .++.||-=|+..++.+   ++|+ ++ .-...-...+++|+.|.++|+.=..++.=-|-.|-+....-+...-.---.+|
T Consensus       137 KR~~k~lDyD~~~~~l~kl~~k~~k~-kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q  215 (244)
T 1uru_A          137 KRNRKLIDYDGQRHSFQNLQANANKR-KDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATE  215 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCBT-TBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666788776533   3344 22 11222233555899999999875555444343333333333333334445689


Q ss_pred             HHhHHhhccchhhhhhHHHHHHhhh
Q 010143           80 LNFFRKGFKSLEAVDTHVRLVAERQ  104 (517)
Q Consensus        80 L~fFrkgLKsLEavEPHVk~vaE~Q  104 (517)
                      +.||+...+.++.|.+.++-+.+++
T Consensus       216 ~~~~~~~~~~~~~l~~~~~~l~~~~  240 (244)
T 1uru_A          216 QVFHNETAKIYSELEAIVDKLATES  240 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999888777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	517
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	5e-08
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	1e-06
d2elba1	268	a.238.1.1 (A:6-273) DCC-interacting protein 13-alp	1e-05
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	3e-05

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 1   MKRQCDEKRNVCEYV---MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRL 57
             +Q +  R   +     + +     +    +G   S Q   QA  D+YE+       +L
Sbjct: 106 TVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKL 165

Query: 58  KSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE 91
           K L++ + + +  Q    H A   +F    K LE
Sbjct: 166 KFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 1   MKRQCDEKRNVCEYV---MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRL 57
              + + K    +         +     +    +    ++QL+ A   YE         L
Sbjct: 109 KVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDEL 168

Query: 58  KSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV-RLVAERQ 104
            +L   +   L+T      A +  F  +  K    ++  V +L  E Q
Sbjct: 169 PALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQ 216

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 268

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 13/90 (14%), Positives = 34/90 (37%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSL 60
           +K       N  +  + +     K +        + + +  +  +  +        L +L
Sbjct: 124 LKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTL 183

Query: 61  KQGQYRSLLTQAARHHAAQLNFFRKGFKSL 90
           +  +  +LL     +  AQ++FF+ G ++L
Sbjct: 184 QYKKKIALLEPLLGYMQAQISFFKMGSENL 213

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 1   MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYE---EEARLCVFRL 57
           ++          E       +  K + GK       ++L+ A ++++   E A   +F L
Sbjct: 144 IQSALQHHLKKLEG-RRLDFDYKKKRQGK----IPDEELRQALEKFDESKEIAESSMFNL 198

Query: 58  KSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR 98
             +   Q   L         AQL + ++  + L+ V   + 
Sbjct: 199 LEMDIEQVSQLSA----LVQAQLEYHKQAVQILQQVTVRLE 235

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	517
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	97.75
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	97.64
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	97.62
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.24

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2e-05  Score=70.72  Aligned_cols=100  Identities=15%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             CchhhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHH
Q 010143            1 MKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA   78 (517)
Q Consensus         1 MKrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~--s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAA   78 (517)
                      +|+.+|..++-|+.+++.|....+.|.  .|..  -..++|.+++..|+..+-=+++.|..|..++-.-+|........|
T Consensus       124 ~kk~fek~~~~yd~~l~k~~~~~k~k~--~~~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a  201 (268)
T d2elba1         124 LKEVFQIASNDHDAAINRYSRLSKKRE--NDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQA  201 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCC--cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999988876544332  2211  123489999999999999999999999999999999999999999


Q ss_pred             HHHhHHhhccch-hhhhhHHHHHHh
Q 010143           79 QLNFFRKGFKSL-EAVDTHVRLVAE  102 (517)
Q Consensus        79 QL~fFrkgLKsL-EavEPHVk~vaE  102 (517)
                      |++||++|+..| +.++|.++-+.+
T Consensus       202 ~~~ff~~~~~~l~~~l~~~~~~l~~  226 (268)
T d2elba1         202 QISFFKMGSENLNEQLEEFLANIGT  226 (268)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999987 789999877654

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.7e-05  Score=65.41  Aligned_cols=90  Identities=23%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCC---CCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKS---KSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA   78 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrs---k~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAA   78 (517)
                      ++.+|.+|.-|+..+..+....+.   .....+-...+.+++.|+.+|+.-...++..|..|.+++.+-++.|-...+.|
T Consensus       107 ~kk~~~~~~dyd~~~~k~~~~~~~~~~~~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~  186 (200)
T d1i4da_         107 VKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNA  186 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            567899999999998776543222   22222334466799999999999999999999999999999999999999999


Q ss_pred             HHHhHHhhccchh
Q 010143           79 QLNFFRKGFKSLE   91 (517)
Q Consensus        79 QL~fFrkgLKsLE   91 (517)
                      |+.||..|.+.||
T Consensus       187 ~~~f~~~~~~~le  199 (200)
T d1i4da_         187 VSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999887

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.62  E-value=8.1e-05  Score=63.16  Aligned_cols=102  Identities=15%  Similarity=0.068  Sum_probs=80.1

Q ss_pred             chhhhhHHHHHHHHHHHHH---hhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQR---EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA   78 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qk---EKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAA   78 (517)
                      .+.++.++.-|+.....+.   +|++......+-...+.+++.|..+|+.-...++--|..|.+....-+.+.-.....+
T Consensus       110 ~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~~~~l~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~  189 (217)
T d1urua_         110 VEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFAT  189 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888889998876543   2222222223334455699999999999999999999999998888888888889999


Q ss_pred             HHHhHHhhccchhhhhhHHHHHHhh
Q 010143           79 QLNFFRKGFKSLEAVDTHVRLVAER  103 (517)
Q Consensus        79 QL~fFrkgLKsLEavEPHVk~vaE~  103 (517)
                      |+.||+.+++.++.+++++.-++++
T Consensus       190 q~~~~~~~~~~~~~l~~~~~~l~~~  214 (217)
T d1urua_         190 EQVFHNETAKIYSELEAIVDKLATE  214 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            9999999999999999999655544

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00014  Score=62.90  Aligned_cols=91  Identities=16%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHhhhhhhhhhhccccccchhhHHHHHHHHHHHHHH
Q 010143            2 KRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLN   81 (517)
Q Consensus         2 KrQCDeKR~vYE~M~a~qkEKGrsk~~KgEs~s~q~QLqaA~~EY~EEAtLfvFRLKSLKQGQ~rSLLTQAARHHAAQL~   81 (517)
                      |.+|+..|..|+..+..+... +.|..|   ..-+ +|+.|.++|++-..-++..|..|..-+ -..+.+---.++||+.
T Consensus       145 ~~~~~~~rk~~d~~~~~~~~~-~~k~~~---~~~e-~l~~a~~~~e~~~~~~~~~l~~l~~~~-~~~~~~l~~~~~aq~~  218 (237)
T d2d4ca1         145 QSALQHHLKKLEGRRLDFDYK-KKRQGK---IPDE-ELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLE  218 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHSS---CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhhh---hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHH
Confidence            456777788888877654322 112111   1233 788888777766555555555553222 2234555668999999


Q ss_pred             hHHhhccchhhhhhHHH
Q 010143           82 FFRKGFKSLEAVDTHVR   98 (517)
Q Consensus        82 fFrkgLKsLEavEPHVk   98 (517)
                      ||++|++.||.|.|++.
T Consensus       219 y~~~~~~~l~~l~~~l~  235 (237)
T d2d4ca1         219 YHKQAVQILQQVTVRLE  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999999875