Citrus Sinensis ID: 010150

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQSTETPVVPFVNVDHEEDESEDDFAQLAHRSSRDNSQGLGRKPISARTNLVPVNPLLPPPPSSKKPVLTSSGPIDYLSGDTYKSEAYPETPEPTPFVAPTHSYKTSSPPLTPTRTSSIPVGNSASPPPFSSGPLYDEPPPLSKSAEQLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAFPGSSARGSAASYDSLVGQTQNLALNSSNPKKEEKPEDVLFKDLVDFARAKTSSSSTSKSNNRSF
cccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccc
ccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccc
MANNAAAcaeratndmligpdwainielcdvinmdpgQAKDALKILKKRlgsknpkvQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVkkkpdlnvREKILILIDTWqeafggprgrypqYYAAYNELRsagvefppraensvpfftppqtqpiveptsafdDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGAldsknpeavKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHddiakgtptaqstetpvvpfvnvdheedesedDFAQLAHrssrdnsqglgrkpisartnlvpvnpllppppsskkpvltssgpidylsgdtykseaypetpeptpfvapthsyktssppltptrtssipvgnsaspppfssgplydeppplsksaeqlppapwdaqpagslppppsrynqrqqffeqnhafpgssargsaasydsLVGQtqnlalnssnpkkeekpedvLFKDLVDFaraktsssstsksnnrsf
mannaaacaeratndmligPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIvkkkpdlnvrEKILILIDTwqeafggpRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAkgtptaqstetpvVPFVNVDHEEDESEDDFAQLAHrssrdnsqglgrkpisartnlvpvnpllppppsskkpvltsSGPIDYLSGDTYKSEAYPETPEPTPFVAPTHSYKTSSPPLTPTRTSSIPVGNSASPPPFSSGPLYDEPPPLSKSAEQLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAFPGSSARGSAASYDSLVGQTQNLalnssnpkkeekpeDVLFKDLVDFaraktsssstsksnnrsf
MannaaacaeratnDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQSTETPVVPFVNVDHEEDESEDDFAQLAHRSSRDNSQGLGRKPISARtnlvpvnpllppppsskkpvltssGPIDYLSGDTYKSEAYPETPEPTPFVAPTHSYKtssppltptrtssipVGNSASPPPFSSGPLYDEPPPLSKSAEQLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAFPGSSARGSAASYDSLVGQTQNLALNSSNPKKEEKPEDVLFKDLVDfaraktsssstsksnnrsf
***********ATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVE**********************************************EIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQ****************************************************************************************************************************************************************************************************************************************************************
**NNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELR************************************************************************************DLVDQ*************NTADEELLCQGLALNDNLQRVLRQH****************************************************************************************************************************************************************************************************************************************DL*********************
*********ERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQSTETPVVPFVNVDH*************************RKPISARTNLVPVNPLLPP*********TSSGPIDYLSGDTYKSEAYPETPEPTPFVAP****************************PFSSGPLYDEPPPLSKSAEQLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAF**********SYDSLVGQTQNLAL***********EDVLFKDLVDFAR****************
***************MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPP**************************GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAK********************************************************************************************************************************************DEP******AEQLPP*******************************************************************DVLFKDLVDFARA***************
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MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKGTPTAQSTETPVVPFVNVDHEEDESEDDFAQLAHRSSRDNSQGLGRKPISARTNLVPVNPLLPPPPSSKKPVLTSSGPIDYLSGDTYKSEAYPETPEPTPFVAPTHSYKTSSPPLTPTRTSSIPVGNSASPPPFSSGPLYDEPPPLSKSAEQLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAFPGSSARGSAASYDSLVGQTQNLALNSSNPKKEEKPEDVLFKDLVDFARAKTSSSSTSKSNNRSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q68FJ8507 TOM1-like protein 2 OS=Xe N/A no 0.498 0.506 0.299 4e-29
O60784492 Target of Myb protein 1 O yes no 0.515 0.540 0.312 5e-27
Q5SRX1507 TOM1-like protein 2 OS=Mu yes no 0.492 0.500 0.290 9e-27
Q6ZVM7507 TOM1-like protein 2 OS=Ho no no 0.486 0.495 0.297 4e-26
O88746492 Target of Myb protein 1 O no no 0.488 0.512 0.303 6e-25
Q54GH3 663 Target of Myb protein 1 O yes no 0.494 0.384 0.258 3e-21
O12940515 Target of Myb protein 1 O no no 0.451 0.452 0.295 1e-20
Q99LI8 775 Hepatocyte growth factor- no no 0.271 0.180 0.333 6e-20
Q9JJ50 776 Hepatocyte growth factor- no no 0.271 0.180 0.333 6e-20
Q0V8S0 777 Hepatocyte growth factor- no no 0.271 0.180 0.333 1e-19
>sp|Q68FJ8|TM1L2_XENLA TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1 Back     alignment and function desciption
 Score =  129 bits (325), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 142/294 (48%), Gaps = 37/294 (12%)

Query: 5   AAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALF 63
              C E+AT+  L   DW +N+E+CD+IN      KDA++ LKKRL G++N +  +LAL 
Sbjct: 13  VGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALT 72

Query: 64  ALETISKNCGDSVFQQIIERDILHE-MVKIV--KKKPDLNVREKILILIDTWQEAFGGPR 120
            LET  KNCG     Q+  RD +   +VKI+  K  P   V++K+L LI  W +AF    
Sbjct: 73  VLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSP 132

Query: 121 GRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQA------ 173
                 +  Y EL+  G+EFP    +++ P  TP ++ P V+P +    +  Q       
Sbjct: 133 DLTGVVHI-YEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSN 191

Query: 174 -------------------------SLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKN 208
                                    S  S+  G   +E+   +G   V+ EML  +    
Sbjct: 192 LSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQ 251

Query: 209 PEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDNLQRVLRQHD 262
             A   E++ DL   CR+ Q+R++ L++  ++EE+  + L +ND+L  V  +++
Sbjct: 252 EGASDLELLQDLNRTCRTMQERIVELISRVSNEEVTEELLHVNDDLNNVFLRYE 305
Probable role in protein transport.
Xenopus laevis (taxid: 8355)
>sp|O60784|TOM1_HUMAN Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2 Back     alignment and function description
>sp|Q5SRX1|TM1L2_MOUSE TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZVM7|TM1L2_HUMAN TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1 Back     alignment and function description
>sp|O88746|TOM1_MOUSE Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1 Back     alignment and function description
>sp|Q54GH3|TOM1_DICDI Target of Myb protein 1 OS=Dictyostelium discoideum GN=tom1 PE=1 SV=1 Back     alignment and function description
>sp|O12940|TOM1_CHICK Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2 Back     alignment and function description
>sp|Q99LI8|HGS_MOUSE Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2 Back     alignment and function description
>sp|Q9JJ50|HGS_RAT Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1 Back     alignment and function description
>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
224062974520 predicted protein [Populus trichocarpa] 0.996 0.988 0.764 0.0
255558490520 protein transporter, putative [Ricinus c 0.994 0.986 0.753 0.0
356509355514 PREDICTED: TOM1-like protein 2-like [Gly 0.961 0.964 0.729 0.0
356515953512 PREDICTED: TOM1-like protein 2-like [Gly 0.959 0.966 0.723 0.0
224085031493 predicted protein [Populus trichocarpa] 0.916 0.959 0.705 0.0
449444074490 PREDICTED: TOM1-like protein 2-like [Cuc 0.928 0.977 0.687 0.0
225459722514 PREDICTED: TOM1-like protein 2-like [Vit 0.980 0.984 0.721 0.0
356547063508 PREDICTED: TOM1-like protein 2-like [Gly 0.953 0.968 0.688 0.0
297850558506 VHS domain-containing protein [Arabidops 0.924 0.942 0.592 1e-161
18394983506 Target of Myb protein 1 [Arabidopsis tha 0.924 0.942 0.588 1e-160
>gi|224062974|ref|XP_002300956.1| predicted protein [Populus trichocarpa] gi|222842682|gb|EEE80229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/522 (76%), Positives = 441/522 (84%), Gaps = 8/522 (1%)

Query: 1   MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLL 60
           MAN AAACAERATNDMLIGPDWA+NIELCD+INMDPGQAKDALKILKKRLGSKNPK+QLL
Sbjct: 1   MANTAAACAERATNDMLIGPDWAVNIELCDIINMDPGQAKDALKILKKRLGSKNPKIQLL 60

Query: 61  ALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPR 120
           ALFALET+SKNCGDSVFQQIIERDILH+MVKIVKKKPDLNVREKIL+LID WQEAF GPR
Sbjct: 61  ALFALETLSKNCGDSVFQQIIERDILHDMVKIVKKKPDLNVREKILLLIDAWQEAFEGPR 120

Query: 121 GRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSDAS 180
           GRYPQY+AAYNELRSAGVEFPPRAENSVPFFTPPQTQPI +  SA++DAAIQASLQSDAS
Sbjct: 121 GRYPQYHAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIADVPSAYEDAAIQASLQSDAS 180

Query: 181 GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTAD 240
           GLSL EIQ A+GLADVLMEML A+D KNPE VKQE++VDLVDQCRSYQKRVMLLVNNT D
Sbjct: 181 GLSLHEIQNARGLADVLMEMLSAMDPKNPEGVKQEVVVDLVDQCRSYQKRVMLLVNNTTD 240

Query: 241 EELLCQGLALNDNLQRVLRQHDDIAKGTPTA--QSTETPVVPFVNVDHEEDESEDDFAQL 298
           E LL QGLALND+LQRVLRQHDD AKG P    +  ETPVVP  N++HE+DESEDDF QL
Sbjct: 241 EGLLFQGLALNDDLQRVLRQHDDFAKGIPGVGEREMETPVVPLANINHEDDESEDDFTQL 300

Query: 299 AHRSSRDNSQGLGRKPISARTNLVPVNPLLPPPPSSKKPVLTSSGPIDYLSGDTYKSEAY 358
           AHRSSRDNSQGLG+KP+S RT   PV+P LPPPP SK PV   +G IDYLSGD YKSE  
Sbjct: 301 AHRSSRDNSQGLGQKPVSVRTQPGPVSPFLPPPPLSKNPVNKETGMIDYLSGDVYKSEGS 360

Query: 359 PETPEPTPFVAPTHSYKTSSPPLTPTRTSSIPVGNSASPPPFSSG-PLYDEPPPLSKSAE 417
           P+  EPTPF  P HS  +SSPP +PT ++S P  ++ +  P  +G P++DEP PLS+S E
Sbjct: 361 PQISEPTPFKVPMHSNVSSSPPYSPTVSASSPPSSAVNSSPVLTGHPVFDEPAPLSQSGE 420

Query: 418 QLPPAPWDAQPAGSLPPPPSRYNQRQQFFEQNHAF---PGSSARGSAASYDSLVGQTQNL 474
           +LPPAPWDAQPAGSLPPPPSRYNQRQQFFE N         S+ GS +SYDSL  QTQNL
Sbjct: 421 RLPPAPWDAQPAGSLPPPPSRYNQRQQFFEHNIGVVGGASHSSSGSGSSYDSLAVQTQNL 480

Query: 475 ALNSSNPKKEEKPEDVLFKDLVDFARAKTSSSSTSKSNNRSF 516
           +LNSS P K+ KPED LFKDLVDF  AK+ SSS+SK NNRSF
Sbjct: 481 SLNSSTPPKQAKPEDALFKDLVDF--AKSKSSSSSKPNNRSF 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255558490|ref|XP_002520270.1| protein transporter, putative [Ricinus communis] gi|223540489|gb|EEF42056.1| protein transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356509355|ref|XP_003523415.1| PREDICTED: TOM1-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356515953|ref|XP_003526661.1| PREDICTED: TOM1-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224085031|ref|XP_002307466.1| predicted protein [Populus trichocarpa] gi|222856915|gb|EEE94462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444074|ref|XP_004139800.1| PREDICTED: TOM1-like protein 2-like [Cucumis sativus] gi|449507440|ref|XP_004163033.1| PREDICTED: TOM1-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225459722|ref|XP_002285894.1| PREDICTED: TOM1-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356547063|ref|XP_003541937.1| PREDICTED: TOM1-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297850558|ref|XP_002893160.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297339002|gb|EFH69419.1| VHS domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394983|ref|NP_564138.1| Target of Myb protein 1 [Arabidopsis thaliana] gi|9454570|gb|AAF87893.1|AC015447_3 Unknown protein [Arabidopsis thaliana] gi|14334602|gb|AAK59479.1| unknown protein [Arabidopsis thaliana] gi|17104531|gb|AAL34154.1| unknown protein [Arabidopsis thaliana] gi|332191975|gb|AEE30096.1| Target of Myb protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2025297446 AT1G76970 "AT1G76970" [Arabido 0.546 0.632 0.699 1e-126
TAIR|locus:2027037506 AT1G21380 [Arabidopsis thalian 0.897 0.915 0.526 6.7e-120
TAIR|locus:2077808607 AT3G08790 [Arabidopsis thalian 0.496 0.421 0.541 8.5e-77
TAIR|locus:2160654447 AT5G63640 [Arabidopsis thalian 0.503 0.581 0.423 9.9e-56
TAIR|locus:2180982542 AT5G01760 [Arabidopsis thalian 0.509 0.485 0.405 4.8e-54
TAIR|locus:2057140 671 AT2G38410 [Arabidopsis thalian 0.294 0.226 0.555 9.6e-49
TAIR|locus:2148121407 AT5G16880 "AT5G16880" [Arabido 0.517 0.656 0.310 7.7e-32
UNIPROTKB|F1NIQ4507 TOM1L2 "Uncharacterized protei 0.306 0.311 0.353 5.5e-25
UNIPROTKB|D3ZZQ9507 Tom1l2 "Protein Tom1l2" [Rattu 0.292 0.297 0.350 9.8e-25
UNIPROTKB|Q6ZVM7507 TOM1L2 "TOM1-like protein 2" [ 0.277 0.282 0.382 1.4e-24
TAIR|locus:2025297 AT1G76970 "AT1G76970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1042 (371.9 bits), Expect = 1.0e-126, Sum P(2) = 1.0e-126
 Identities = 207/296 (69%), Positives = 248/296 (83%)

Query:    15 DMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGD 74
             DMLIGPDWAINIELCD+INMDP QAK+A+K+LKKRLGSKN KVQ+LAL+ALET+SKNCG+
Sbjct:    15 DMLIGPDWAINIELCDLINMDPSQAKEAVKVLKKRLGSKNSKVQILALYALETLSKNCGE 74

Query:    75 SVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELR 134
             +V+Q II+R +L++MVKIVKKKP+LNVREKIL L+DTWQEAFGG  GRYPQYY AYN+LR
Sbjct:    75 NVYQLIIDRGLLNDMVKIVKKKPELNVREKILTLLDTWQEAFGGRGGRYPQYYNAYNDLR 134

Query:   135 SAGVEFPPRAENSVPFFTPPQTQPIVEPTSAFDDAAIQASLQSD-ASGLSLAEIQRAKGL 193
             SAG+EFPPR E+S+ FFTPPQTQP        +DAAIQASLQ D AS LSL EIQ A+G 
Sbjct:   135 SAGIEFPPRTESSLSFFTPPQTQPD-------EDAAIQASLQGDDASSLSLEEIQSAEGS 187

Query:   194 ADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEELLCQGLALNDN 253
              DVLM+MLGA D  NPE++K+E+IVDLV+QCR+YQ+RVM LVN T DEELLCQGLALNDN
Sbjct:   188 VDVLMDMLGAHDPGNPESLKEEVIVDLVEQCRTYQRRVMTLVNTTTDEELLCQGLALNDN 247

Query:   254 LQRVLRQHDDIAK-GTPTAQSTET---PVVPFVNVDH--EEDESEDDFAQLAHRSS 303
             LQ VL++HDDIA  G+  +    T   P V  V+++H  E+DES+D+FA+LAHRSS
Sbjct:   248 LQHVLQRHDDIANVGSVPSNGRNTRAPPPVQIVDINHDDEDDESDDEFARLAHRSS 303
GO:0005622 "intracellular" evidence=IEA
GO:0005795 "Golgi stack" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA;ISS
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS
GO:0008565 "protein transporter activity" evidence=ISS
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0045087 "innate immune response" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2027037 AT1G21380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077808 AT3G08790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160654 AT5G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180982 AT5G01760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057140 AT2G38410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148121 AT5G16880 "AT5G16880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ4 TOM1L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|D3ZZQ9 Tom1l2 "Protein Tom1l2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZVM7 TOM1L2 "TOM1-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
cd03561133 cd03561, VHS, VHS domain family; The VHS domain is 7e-52
smart00288133 smart00288, VHS, Domain present in VPS-27, Hrs and 5e-43
cd03569142 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs an 2e-35
pfam00790136 pfam00790, VHS, VHS domain 1e-27
cd03565141 cd03565, VHS_Tom1, VHS domain family, Tom1 subfami 2e-26
cd03568144 cd03568, VHS_STAM, VHS domain family, STAM subfami 1e-23
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 4e-22
pfam0312799 pfam03127, GAT, GAT domain 6e-21
cd03567139 cd03567, VHS_GGA, VHS domain family, GGA subfamily 7e-14
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
>gnl|CDD|239620 cd03561, VHS, VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information 
 Score =  172 bits (438), Expect = 7e-52
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 2/128 (1%)

Query: 10  ERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETIS 69
           ERAT+  L  PDWA+N+ELCD+IN+ P   K+A + ++K++   NP VQLLAL  LE + 
Sbjct: 6   ERATSPSLEEPDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLV 65

Query: 70  KNCGDSVFQQIIERDILHEMVKIVKK--KPDLNVREKILILIDTWQEAFGGPRGRYPQYY 127
           KNCG     Q+ +++ L E+VKI K   K D  VREK L LI  W E+FGG     P   
Sbjct: 66  KNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGGHSEDLPGIE 125

Query: 128 AAYNELRS 135
            AY  L+ 
Sbjct: 126 DAYKLLKR 133

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general membrane targeting/cargo recognition role in vesicular trafficking. Length = 133
>gnl|CDD|197630 smart00288, VHS, Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>gnl|CDD|216121 pfam00790, VHS, VHS domain Back     alignment and domain information
>gnl|CDD|239623 cd03565, VHS_Tom1, VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>gnl|CDD|239625 cd03568, VHS_STAM, VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|190532 pfam03127, GAT, GAT domain Back     alignment and domain information
>gnl|CDD|239624 cd03567, VHS_GGA, VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 100.0
KOG1086594 consensus Cytosolic sorting protein/ADP-ribosylati 100.0
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 100.0
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 100.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 100.0
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 100.0
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 100.0
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 100.0
cd03561133 VHS VHS domain family; The VHS domain is present i 100.0
KOG2199462 consensus Signal transducing adaptor protein STAM/ 100.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.93
KOG1818 634 consensus Membrane trafficking and cell signaling 99.88
PF03127100 GAT: GAT domain; InterPro: IPR004152 The GAT domai 99.79
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 98.29
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.14
cd03562114 CID CID (CTD-Interacting Domain) domain family; CI 98.0
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 97.95
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 97.87
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.48
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 97.46
KOG0251491 consensus Clathrin assembly protein AP180 and rela 96.96
smart00582121 RPR domain present in proteins, which are involved 96.52
KOG2374 661 consensus Uncharacterized conserved protein [Funct 95.54
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 93.06
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.41
KOG2057499 consensus Predicted equilibrative nucleoside trans 91.58
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 91.28
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 88.83
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 85.89
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 82.2
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 81.59
PF0481864 CTD_bind: RNA polymerase II-binding domain.; Inter 80.18
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2e-66  Score=551.85  Aligned_cols=264  Identities=52%  Similarity=0.807  Sum_probs=237.0

Q ss_pred             hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhccH
Q 010150            4 NAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIER   83 (516)
Q Consensus         4 ~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVask   83 (516)
                      ++..+|+|||++.|.++||++||+|||+||.+.++++||+|+|+|||++++++||++||+|||+||||||+.||.+|+++
T Consensus         1 ~v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k   80 (470)
T KOG1087|consen    1 SVGKLIDKATSESLAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK   80 (470)
T ss_pred             ChHHHHHHhhcccccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCCCCCCCCCCCCCCCCCC--
Q 010150           84 DILHEMVKIVKKK-PDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPFFTPPQTQPIV--  160 (516)
Q Consensus        84 ~FL~eLvklvk~k-~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~~~s~Pi~tPp~t~~~~--  160 (516)
                      +||++||++++++ .+..||+|||.||++|+++|++..++++.|+.+|++|+++||+||.+++++.++++|+......  
T Consensus        81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~~~G~~FP~r~~~sl~~~~pp~~~~~~~~  160 (470)
T KOG1087|consen   81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELRRKGVEFPQRDEESLAVLTPPAVLRPAPE  160 (470)
T ss_pred             HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHHHcCCcCCCCccccccccCCCCCCCCCCC
Confidence            9999999999998 8999999999999999999999777899999999999999999999999988888776421111  


Q ss_pred             ----CCCcccchHHHhh------hcccccccCCHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHH
Q 010150          161 ----EPTSAFDDAAIQA------SLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKR  230 (516)
Q Consensus       161 ----~~p~~~~~a~iq~------~lq~e~~~~sl~eLe~a~~n~~LL~EML~~~~P~~~~~~~dEli~EL~~qCr~~q~r  230 (516)
                          .+|.++..+.+..      ....++..+++++|++++++++||+|||.+++|+++++.++|++++|+++||.+|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seLe~~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~r  240 (470)
T KOG1087|consen  161 PQEQSGPPNEANASMKSMAGYPTEATPEVSTLSLSELESVKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRR  240 (470)
T ss_pred             chhhcCCccccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence                1122222111110      011145567789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 010150          231 VMLLVNNTADEELLCQGLALNDNLQRVLRQHDDIAKG  267 (516)
Q Consensus       231 I~rLI~~v~DEelL~~LL~lNDeL~~aL~kYd~l~~g  267 (516)
                      ||+||++++||++|++||++||+|++||.+||++.+|
T Consensus       241 v~~Li~~~~DE~ll~~lL~lND~L~~vL~~ye~~~~g  277 (470)
T KOG1087|consen  241 VMHLIEETSDEELLCELLKLNDELQRVLERYERIASG  277 (470)
T ss_pred             HHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999

>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3 Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1 Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA Back     alignment and domain information
>KOG2374 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF04818 CTD_bind: RNA polymerase II-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3zyq_A226 Crystal Structure Of The Tandem Vhs And Fyve Domain 8e-18
1elk_A157 Vhs Domain Of Tom1 Protein From H. Sapiens Length = 3e-15
1dvp_A220 Crystal Structure Of The Vhs And Fyve Tandem Domain 5e-13
1x5b_A163 The Solution Structure Of The Vhs Domain Of Human S 7e-12
3rru_A152 X-Ray Crystal Structure Of The Vhs Domain Of Human 3e-08
3ldz_A140 Crystal Structure Of Human Stam1 Vhs Domain In Comp 4e-07
1wrd_A103 Crystal Structure Of Tom1 Gat Domain In Complex Wit 1e-05
1jpl_A171 Gga3 Vhs Domain Complexed With C-Terminal Peptide F 2e-05
1lf8_A171 Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Ph 4e-05
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 16  MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDS 75
           +L+  DW   +++CD+I     QAK A+  +KK++  KNP V L AL  +E++ KNCG +
Sbjct: 20  LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT 79
Query: 76  VFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRS 135
           V  ++  +  + E+  ++K++ ++NVR KIL LI  W  AF     +Y      Y  ++ 
Sbjct: 80  VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE-PKYKVVQDTYQIMKV 138
Query: 136 AGVEFPPRAENSVPF 150
            G  FP   E+   F
Sbjct: 139 EGHVFPEFKESDAMF 153
>pdb|1ELK|A Chain A, Vhs Domain Of Tom1 Protein From H. Sapiens Length = 157 Back     alignment and structure
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220 Back     alignment and structure
>pdb|1X5B|A Chain A, The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2 Length = 163 Back     alignment and structure
>pdb|3RRU|A Chain A, X-Ray Crystal Structure Of The Vhs Domain Of Human Tom1-Like Protein, Northeast Structural Genomics Consortium Target Hr3050e Length = 152 Back     alignment and structure
>pdb|3LDZ|A Chain A, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 140 Back     alignment and structure
>pdb|1WRD|A Chain A, Crystal Structure Of Tom1 Gat Domain In Complex With Ubiquitin Length = 103 Back     alignment and structure
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From Cation-Independent Mannose 6-Phosphate Receptor Length = 171 Back     alignment and structure
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal Phosphopeptide Length = 171 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 2e-47
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 3e-47
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 2e-45
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 5e-45
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 2e-44
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 3e-44
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 3e-44
3g2s_A149 C-terminal fragment of sortilin-related receptor; 6e-44
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 1e-38
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 7e-29
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 5e-23
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 1e-18
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 9e-18
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 3e-10
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Length = 148 Back     alignment and structure
 Score =  160 bits (407), Expect = 2e-47
 Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 9/138 (6%)

Query: 10  ERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETIS 69
            +AT+  +   DW+     C+ +N DP     A  +L  ++ S   K  L AL  LE   
Sbjct: 7   NKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCM 66

Query: 70  KNCGDSVFQQIIERDILHEMVKIVKKKP-----DLNVREKILILIDTWQEAFGGPRGRYP 124
            +CG+    ++ +   L+E++K++  K         V+ +++ ++ +W   F        
Sbjct: 67  NHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DI 122

Query: 125 QYYAAYNELRSAGVEFPP 142
           +   AY  L+  G+    
Sbjct: 123 KIRDAYQMLKKQGIIKQD 140
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Length = 163 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} Length = 140 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Length = 171 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Length = 157 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Length = 149 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Length = 152 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Length = 103 Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Length = 111 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 158 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Length = 140 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Length = 186 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Length = 144 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 100.0
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 100.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 100.0
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 100.0
3g2s_A149 C-terminal fragment of sortilin-related receptor; 100.0
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 100.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 100.0
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 100.0
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 100.0
1wrd_A103 TOM1, target of MYB protein 1; three-helix bundle, 99.84
1oxz_A186 ADP-ribosylation factor binding protein GGA1; GAT 99.83
1naf_A158 ADP-ribosylation factor binding protein GGA1, golg 99.8
1o3x_A140 ADP-ribosylation factor binding protein GGA1; prot 99.8
1wr6_A111 ADP-ribosylation factor binding protein GGA3; thre 99.78
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.18
1sz9_A144 PCF11 protein; RNA polymerase II CTD interacting d 98.14
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 97.92
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 97.9
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 97.74
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 97.61
2pjw_H88 Uncharacterized protein YHL002W; GAT domain, core 96.97
4flb_A132 Regulation of nuclear PRE-mRNA domain-containing; 96.85
2pjw_V91 Vacuolar protein sorting-associated protein 27; GA 96.48
3d9j_A145 RNA-binding protein 16; SCAF8, RNA polymerase II C 96.43
4fu3_A135 Regulation of nuclear PRE-mRNA domain-containing 1 95.74
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 95.37
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 95.21
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 95.16
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.43
2km4_A142 Regulator of TY1 transposition protein 103; CTD-in 93.59
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 91.81
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 90.82
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 89.83
3clj_A157 Protein NRD1; CTD-interacting domain, nucleus, pho 88.97
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 87.92
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 87.03
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 84.39
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 84.36
3f1i_H98 Hepatocyte growth factor-regulated tyrosine kinas 83.23
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 82.92
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 81.12
3f1i_S77 STAM-1, signal transducing adapter molecule 1; HGS 80.96
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
Probab=100.00  E-value=1.3e-43  Score=323.74  Aligned_cols=138  Identities=28%  Similarity=0.509  Sum_probs=133.9

Q ss_pred             CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhhc
Q 010150            2 ANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQII   81 (516)
Q Consensus         2 ~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eVa   81 (516)
                      +|+++++|+|||++.+.++||++|++|||+||+++.+++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|+
T Consensus         3 ~~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~eva   82 (140)
T 3ldz_A            3 TNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVC   82 (140)
T ss_dssp             CCTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHS
T ss_pred             CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCC
Q 010150           82 ERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFP  141 (516)
Q Consensus        82 sk~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP  141 (516)
                      +++|+++|++++++ +++.||+||+++|+.|+++|++++ .|..|.++|++||++||+||
T Consensus        83 s~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP  140 (140)
T 3ldz_A           83 SRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP-QLSLISAMIKNLKEQGVTFP  140 (140)
T ss_dssp             SHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG-GGTHHHHHHHHHHHTTCCCC
T ss_pred             hHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHccCcCc
Confidence            99999999999964 789999999999999999999875 58999999999999999998
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1 Back     alignment and structure
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A Back     alignment and structure
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens} Back     alignment and structure
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A Back     alignment and structure
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A* Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d1dvpa1145 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila mel 2e-50
d1elka_153 a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) 4e-47
d1mhqa_143 a.118.9.2 (A:) ADP-ribosylation factor binding pro 2e-46
d1juqa_151 a.118.9.2 (A:) ADP-ribosylation factor binding pro 6e-46
d1ujka_145 a.118.9.2 (A:) ADP-ribosylation factor binding pro 2e-44
d1wrda193 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 2e-23
d1wr6a190 a.7.8.1 (A:211-300) ADP-ribosylation factor bindin 4e-21
d1o3xa_112 a.7.8.1 (A:) ADP-ribosylation factor binding prote 2e-19
d1szaa_144 a.118.9.4 (A:) PCF11 protein {Baker's yeast (Sacch 8e-13
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 5e-11
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  167 bits (425), Expect = 2e-50
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 1/136 (0%)

Query: 10  ERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETIS 69
           E AT+ + + PDW   + +CD IN      K+A   +KK++ S NP     +L  LE+I 
Sbjct: 11  ENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIV 70

Query: 70  KNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAA 129
           KNCG  V +++  ++        ++  P  NVR+K+L L+ TW  AF     +Y      
Sbjct: 71  KNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS-SDKYQAIKDT 129

Query: 130 YNELRSAGVEFPPRAE 145
              L++ G  FP   E
Sbjct: 130 MTILKAKGHTFPELRE 145
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Length = 112 Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 144 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 100.0
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 100.0
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 100.0
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 100.0
d1wrda193 Target of Myb protein 1, TOM1 {Human (Homo sapiens 99.85
d1wr6a190 ADP-ribosylation factor binding protein Gga3 {Huma 99.82
d1o3xa_112 ADP-ribosylation factor binding protein Gga1 {Huma 99.76
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 98.95
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 97.9
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 97.85
d1szaa_144 PCF11 protein {Baker's yeast (Saccharomyces cerevi 97.85
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 85.11
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 84.09
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 81.41
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=4.3e-42  Score=313.11  Aligned_cols=143  Identities=29%  Similarity=0.543  Sum_probs=138.0

Q ss_pred             CCchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcCCccHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCchhhhhh
Q 010150            1 MANNAAACAERATNDMLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQI   80 (516)
Q Consensus         1 m~n~~~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeA~raIrKRLks~np~vql~AL~LLe~lVkNCG~~Fh~eV   80 (516)
                      +.++++++|+|||++.+.++||++|++|||+||.++.++++|+|+|+|||+|+|+++|++||+|||+||+|||..||.+|
T Consensus         2 ~~s~~~~~iekAT~~~~~~~dw~~il~icD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i   81 (145)
T d1dvpa1           2 FRSSFCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEV   81 (145)
T ss_dssp             CCSHHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             CcchHHHHHHHHcCcCCCCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCcCCCCCC
Q 010150           81 IERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRA  144 (516)
Q Consensus        81 ask~FL~eLvklvk~k~d~~Vk~KIL~Ll~~W~~~F~~~~~~~~~~~~~Y~~LK~~Gv~FP~~~  144 (516)
                      ++++|+++|++++++.++..||+||+++|+.|+++|++++ .|..|.++|+.||++||.||..+
T Consensus        82 ~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~l~  144 (145)
T d1dvpa1          82 FTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELR  144 (145)
T ss_dssp             SSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCC
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cchHHHHHHHHHHHCCCCCcCCC
Confidence            9999999999999988899999999999999999999875 69999999999999999999865
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1szaa_ a.118.9.4 (A:) PCF11 protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure