Citrus Sinensis ID: 010166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MDGAANRGGGAGDPSATGGGGTPPSQPTPVQNATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEccccccEEEEccHHHHHHHHHHccccccHHHHHHHHccccccccccccEEEcccccccccHHHHHHHccccccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHcccccccccc
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHccccEEccccccEEEccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccHEccHHHHHcHHHHHHHHHccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccEEEEcccccHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccHccccccccccHHHcccccccHcHHHHHHHHcccccccccc
mdgaanrgggagdpsatggggtppsqptpvqnatnapppflsktydmvddlatdsivswsptsnsfvvwnppefardllpkyfkhnnfSSFVRQLNtygfrkvdpdrwefaneGFLRGQKHLLRSisrrkpahghghqqshqqnaqsssvgacvevgkfGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRrirqegvaeddhattadgqivkyqpSMNEAAKSMLRKIIKMESSQLEsfnnnhdnyligdgasssntgstssrmsgvtlqevpqtsgpyapaasgiladgpsaaaterqsssraiasektttdqfpdINLLVAAQEatslpisesdvimpdlaqipeimpesmdgipaesfigsrmenggyvdptslivngsvpieiddistdADIDALLessglwdivhspvpediestsVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGllnsetkev
mdgaanrgggagdpsatggGGTPPSQPTPVQNATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQqshqqnaqssSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLrqqqqasdsQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAeankkrrirqegvaeddhattadgqivkyqpSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSssraiasektttdqfpdINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEqmgllnsetkev
MDgaanrgggagdpsatggggtppsqptpVQNATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPahghghqqshqqnaqsssVGACVEVGKFGLEEEVERLKRDKNVLMQELVrlrqqqqasdsqlqTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIgdgasssntgstssrmsgVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPieiddistdadidALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
******************************************KTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL****************************ACVEVGKFGLE*************************************************AFLAKAVQSPGFLAQF************************************************************************************************************************************************DINLLVAA************VI**********************FIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVP***********************************************
****************************************LSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL*************************************************NVLMQELVRLRQQQQASDSQLQTMVQRLQ*********************************************************************************************************************************************************************************************************************************************************IDALLESSGLWD*************************************DQLTE************
*******************************NATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISR***********************ACVEVGKFGLEEEVERLKRDKNVLMQELVRL***********QTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGAS***********************GPYAPAASGILA***********************TDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
**********************************NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRR**********************ACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDS****************************GQIVKYQPSMNEAAKSMLRKIIKMESSQL************************************************************************************************************************************************************DADIDALLESSGLWDIVHSPV************************WNKVQS*D*LT***GLL*******
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDGAANRGGGAGDPSATGGGGTPPSQPTPVQNATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQQNAQSSSVGACVEVGxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQASDSQLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDISTDADIDALLESSGLWDIVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKVQSMDQLTEQMGLLNSETKEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q40152527 Heat shock factor protein N/A no 0.872 0.853 0.582 1e-145
P41153527 Heat shock factor protein N/A no 0.868 0.850 0.582 1e-142
Q9LQM7485 Heat stress transcription yes no 0.885 0.942 0.523 1e-139
Q84T61506 Heat stress transcription yes no 0.908 0.926 0.513 1e-127
P41151495 Heat stress transcription no no 0.885 0.923 0.479 1e-120
O81821481 Heat stress transcription no no 0.856 0.918 0.474 1e-107
Q9SCW5468 Heat stress transcription no no 0.823 0.908 0.470 1e-105
Q6VBB2372 Heat stress transcription no no 0.437 0.607 0.592 1e-73
Q6F388357 Heat stress transcription no no 0.430 0.621 0.578 7e-72
P41152351 Heat shock factor protein N/A no 0.416 0.612 0.530 1e-68
>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1 Back     alignment and function desciption
 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 292/501 (58%), Positives = 351/501 (70%), Gaps = 51/501 (10%)

Query: 40  FLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYG 99
           FL KTYDMVDD +TD IVSWSPT+NSFVVW+PPEFA+DLLPKYFKHNNFSSFVRQLNTYG
Sbjct: 40  FLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYG 99

Query: 100 FRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGH---------QQSHQQNAQSSSV 150
           FRKVDPDRWEFANEGFLRGQKHLL+SISRRKPAHGH           QQ  Q    S+SV
Sbjct: 100 FRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASV 159

Query: 151 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQGMEQRHQQM 210
           GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQA+D+QLQ MVQRLQGME R QQM
Sbjct: 160 GACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQM 219

Query: 211 MAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVKYQP 270
           M+FLAKAV  PGFLAQFVQQQN+SNKRIAE +KKRRI+Q+  ++D   T ADGQIVKYQP
Sbjct: 220 MSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKRRIKQDIESQDPSVTPADGQIVKYQP 279

Query: 271 SMNEAAKSMLRKIIKMESS-QLESFNNNHDNYLIGDGASSSNTGSTSSRMSGVTLQEVPQ 329
            +NEAAK+MLR++ K++SS +L++F+N+ +++LIGDG+  SN  ++S R+SGVTLQEVP 
Sbjct: 280 GINEAAKAMLRELSKLDSSPRLDNFSNSPESFLIGDGSPQSN--ASSGRVSGVTLQEVPP 337

Query: 330 TSG-PYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATSLPIS 388
           TSG P    AS I       A +E QSS     SE    +Q  +I  LV  ++     +S
Sbjct: 338 TSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSE-IINNQLSNIIPLVGGEDLHPGSLS 396

Query: 389 ESDVIMPDLAQIPEIMPE-SMDGIPAESFIGSRMENGGYVDPTSLIVNGSVPIEIDDIST 447
            SD+IMP+L+Q+  I+PE + D I  +SF+ +    G       L + GS       +S 
Sbjct: 397 ASDMIMPELSQLQGILPENNTDVIGCDSFMDTSAVEG----KVGLDIIGSC------LSP 446

Query: 448 DADID---ALLE------SSG--LWD-IVHSPVP------EDIESTSVDVKTVGNEMQAI 489
            ADID    LL+      S G   W+  + SP        +DI +TS        E +  
Sbjct: 447 GADIDWQSGLLDEIEEFPSVGDPFWEKFLQSPCSPDAAMDDDISNTS--------ETKPQ 498

Query: 490 ENGWNKVQSMDQLTEQMGLLN 510
            NGW+K Q+M+ LTEQMG  N
Sbjct: 499 INGWDKTQNMEHLTEQMGATN 519
DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Solanum lycopersicum (taxid: 4081)
>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2 Back     alignment and function description
>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1 Back     alignment and function description
>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2 Back     alignment and function description
>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2 Back     alignment and function description
>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2 Back     alignment and function description
>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1 Back     alignment and function description
>sp|Q6F388|HFA2E_ORYSJ Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1 Back     alignment and function description
>sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
255573449510 Heat shock factor protein HSF8, putative 0.930 0.941 0.662 0.0
347369340482 heat shock transcription factor [Populus 0.914 0.979 0.683 0.0
224138180484 predicted protein [Populus trichocarpa] 0.918 0.979 0.670 0.0
351722667510 heat shock factor protein hsf8-related [ 0.976 0.988 0.622 0.0
359474544496 PREDICTED: heat shock factor protein HSF 0.906 0.943 0.657 0.0
147767343495 hypothetical protein VITISV_017888 [Viti 0.891 0.929 0.665 0.0
224071375481 predicted protein [Populus trichocarpa] 0.912 0.979 0.676 1e-180
357485115502 Heat stress transcription factor A-1d [M 0.920 0.946 0.645 1e-175
115521215502 heat shock transcription factor 1 [Medic 0.920 0.946 0.641 1e-172
115521211502 heat shock transcription factor 1 [Medic 0.920 0.946 0.641 1e-172
>gi|255573449|ref|XP_002527650.1| Heat shock factor protein HSF8, putative [Ricinus communis] gi|223532955|gb|EEF34721.1| Heat shock factor protein HSF8, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/500 (66%), Positives = 402/500 (80%), Gaps = 20/500 (4%)

Query: 23  PPSQPTPVQNATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKY 82
           P   P P+  A+NAPPPFLSKTYDMVDD ATD++VSWSPT+NSFVVWNPPEFARDLLPKY
Sbjct: 25  PAVSPVPISTASNAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKY 84

Query: 83  FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPAHGHGHQQSHQ 142
           FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+SISRRKPAHGHGHQQ+ Q
Sbjct: 85  FKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHGHQQAQQ 144

Query: 143 QNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDSQLQTMVQRLQG 202
            + QSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQ +DSQLQTMVQRLQG
Sbjct: 145 PHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQG 204

Query: 203 MEQRHQQMMAFLAKAVQSPGFLAQFVQQQNDSNKRIAEANKKRRIRQEGVAEDDHATTAD 262
           MEQR QQMM+FLAKA+QSPGF AQFVQQQN+SN+RI EANKKRR++Q+G+ E++ +T+ D
Sbjct: 205 MEQRQQQMMSFLAKAMQSPGFFAQFVQQQNESNRRITEANKKRRLKQDGIPENESSTSPD 264

Query: 263 GQIVKYQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIGDGASSSN---TGSTSSRM 319
           GQIVKYQP +NEAAK++LR+I+K  +++  S+NN  + +LIG  + +S+   +G +S+R+
Sbjct: 265 GQIVKYQPLVNEAAKAILRQIMK-SNAEATSYNNGLEGFLIGSDSPTSSRMESGGSSNRI 323

Query: 320 SGVTLQEVPQTSG--PYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLV 377
           SGVTLQEVP TSG   Y PAASG  A GP+ + +E +SS     S+K T  QFPDI+ LV
Sbjct: 324 SGVTLQEVPPTSGQSTYLPAASGQTAHGPTTSISEMKSSLCIDGSKKLTASQFPDISALV 383

Query: 378 AAQEATSLPISESDVIMPDLAQIPEIMPESMDGIPAESFIGSRMENGGYVDPTSLIVNGS 437
            ++EA S+ I +SDV+MP L+QIP++ PES   I  E ++     +  ++D TSL +   
Sbjct: 384 GSEEAPSISIPQSDVVMPPLSQIPDMAPES---IVDEDYMQPESVDDEFMDLTSLGIG-- 438

Query: 438 VPIEIDDISTDADIDALLESSGLWD-IVHSPVPEDIESTSVDVKTVGNEMQAIENGWNKV 496
                   + D DID LLE+S  WD +V SPVPEDIES+SVDV+T  N+++ ++NGWN  
Sbjct: 439 --------NPDTDIDILLENSSFWDELVQSPVPEDIESSSVDVQTKENDVRPMDNGWNNT 490

Query: 497 QSMDQLTEQMGLLNSETKEV 516
           Q MDQLTEQMGLL SETK++
Sbjct: 491 QRMDQLTEQMGLLTSETKKL 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|347369340|gb|AEO91550.1| heat shock transcription factor [Populus simonii] Back     alignment and taxonomy information
>gi|224138180|ref|XP_002326538.1| predicted protein [Populus trichocarpa] gi|222833860|gb|EEE72337.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|351722667|ref|NP_001236740.1| heat shock factor protein hsf8-related [Glycine max] gi|42415865|gb|AAS15800.1| heat shock factor protein hsf8-related [Glycine max] Back     alignment and taxonomy information
>gi|359474544|ref|XP_003631489.1| PREDICTED: heat shock factor protein HSF8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147767343|emb|CAN71266.1| hypothetical protein VITISV_017888 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224071375|ref|XP_002303429.1| predicted protein [Populus trichocarpa] gi|222840861|gb|EEE78408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357485115|ref|XP_003612845.1| Heat stress transcription factor A-1d [Medicago truncatula] gi|355514180|gb|AES95803.1| Heat stress transcription factor A-1d [Medicago truncatula] Back     alignment and taxonomy information
>gi|115521215|gb|ABJ09073.1| heat shock transcription factor 1 [Medicago sativa] gi|115521221|gb|ABJ09076.1| heat shock transcription factor 1 [Medicago sativa] Back     alignment and taxonomy information
>gi|115521211|gb|ABJ09071.1| heat shock transcription factor 1 [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2028326485 HSFA1D "AT1G32330" [Arabidopsi 0.724 0.771 0.503 1.3e-91
TAIR|locus:2075447468 HSFA1E "AT3G02990" [Arabidopsi 0.575 0.634 0.550 1.7e-88
TAIR|locus:2005495495 HSF1 "AT4G17750" [Arabidopsis 0.715 0.745 0.475 1e-82
TAIR|locus:2149050481 HSF3 "AT5G16820" [Arabidopsis 0.715 0.767 0.494 1.5e-81
TAIR|locus:2094339406 HSFA6B "AT3G22830" [Arabidopsi 0.412 0.524 0.509 5.3e-56
TAIR|locus:2057371345 HSFA2 "AT2G26150" [Arabidopsis 0.403 0.602 0.511 7.8e-56
TAIR|locus:2117139401 HSF A4A "AT4G18880" [Arabidops 0.478 0.615 0.369 2e-49
TAIR|locus:2083690272 HSFA7A "AT3G51910" [Arabidopsi 0.187 0.356 0.649 4.7e-46
TAIR|locus:2144603412 HSFA3 "AT5G03720" [Arabidopsis 0.430 0.538 0.441 7.9e-46
TAIR|locus:2200171374 HSFA8 "AT1G67970" [Arabidopsis 0.459 0.633 0.42 1.5e-44
TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 202/401 (50%), Positives = 251/401 (62%)

Query:    33 ATNAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFV 92
             ++NAPPPFLSKTYDMVDD  TDSIVSWS  +NSF+VW PPEFARDLLPK FKHNNFSSFV
Sbjct:    31 SSNAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFV 90

Query:    93 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSISRRKPXXXXXXXXXXXXXXXX--XXV 150
             RQLNTYGFRKVDPDRWEFANEGFLRGQKHLL+SI+RRKP                    V
Sbjct:    91 RQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSV 150

Query:   151 GACVEVGKFGLEEEVERLKRDKNVLMQELVXXXXXXXXXXXXXXTMVQRLQGMEQRHQQM 210
              ACVEVGKFGLEEEVERLKRDKNVLMQELV              TMVQRLQGME R QQ+
Sbjct:   151 SACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQL 210

Query:   211 MAFLAKAVQSPGFLAQFVQQQN---DSNKRIAEANKKRRIRQEGVAEDDHATTADGQIVK 267
             M+FLAKAVQSP FL+QF+QQQN   +SN+RI++ +KKRR +++G+  ++ + T DGQIVK
Sbjct:   211 MSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSATPDGQIVK 270

Query:   268 YQPSMNEAAKSMLRKIIKMESSQLESFNNNHDNYLIXXXXXXXXXXXXXXXXXXV---TL 324
             YQP M+E AK+M ++++KME      +    D +L+                  V   TL
Sbjct:   271 YQPPMHEQAKAMFKQLMKMEP-----YKTGDDGFLLGNGTSTTEGTEMETSSNQVSGITL 325

Query:   325 QEVPQTSGPYAPAASGILADGPSAAATERQSSSRAIASEKTTTDQFPDINLLVAAQEATS 384
             +E+P  S   + +      +  SAA+   +++   I S    T   PD   ++    +  
Sbjct:   326 KEMPTASEIQSSSPIETTPENVSAAS---EATENCIPSPDDLT--LPDFTHMLPENNSEK 380

Query:   385 LPIS--------ESDVIMPDLAQIPEIMPESMDGIPAESFI 417
              P S         S ++ PDL  I + +   +D  P +S I
Sbjct:   381 PPESFMEPNLGGSSPLLDPDLL-IDDSLSFDIDDFPMDSDI 420
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009408 "response to heat" evidence=IEP
GO:0009407 "toxin catabolic process" evidence=RCA
TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083690 HSFA7A "AT3G51910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144603 HSFA3 "AT5G03720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41153HSF8_SOLPENo assigned EC number0.58280.86820.8500N/Ano
Q40152HSF8_SOLLCNo assigned EC number0.58280.87200.8538N/Ano
Q9LQM7HFA1D_ARATHNo assigned EC number0.52310.88560.9422yesno
Q84T61HSFA1_ORYSJNo assigned EC number0.51390.90890.9268yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
pfam0044796 pfam00447, HSF_DNA-bind, HSF-type DNA-binding 2e-55
smart00415105 smart00415, HSF, heat shock factor 1e-54
COG5169282 COG5169, HSF1, Heat shock transcription factor [Tr 1e-30
pfam12325121 pfam12325, TMF_TATA_bd, TATA element modulatory fa 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-04
>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding Back     alignment and domain information 
 Score =  180 bits (458), Expect = 2e-55
 Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 39  PFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTY 98
           PFL K Y++++D + D I+SWS   NSF++W+P EFA+ +LPKYFKHNNFSSFVRQLN Y
Sbjct: 1   PFLHKLYEILEDPSYDDIISWSEDGNSFIIWDPEEFAKQVLPKYFKHNNFSSFVRQLNMY 60

Query: 99  GFRKVDPDR--WEFANEGFLRGQKHLLRSISRRKP 131
           GF KV  DR  WEFA+  F RGQK LL  I RRK 
Sbjct: 61  GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96
>gnl|CDD|214654 smart00415, HSF, heat shock factor Back     alignment and domain information
>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription] Back     alignment and domain information
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG0627304 consensus Heat shock transcription factor [Transcr 100.0
smart00415105 HSF heat shock factor. 100.0
PF00447103 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0 100.0
COG5169282 HSF1 Heat shock transcription factor [Transcriptio 99.97
PF0017885 Ets: Ets-domain; InterPro: IPR000418 Transcription 94.5
PF03310121 Cauli_DNA-bind: Caulimovirus DNA-binding protein; 94.44
smart0041387 ETS erythroblast transformation specific domain. v 91.56
KOG3806177 consensus Predicted transcription factor [Transcri 86.81
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.88
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 85.76
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 85.35
COG307479 Uncharacterized protein conserved in bacteria [Fun 84.65
TIGR0244965 conserved hypothetical protein TIGR02449. Members 84.59
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 84.36
TIGR03752472 conj_TIGR03752 integrating conjugative element pro 82.2
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 81.39
>KOG0627 consensus Heat shock transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-47  Score=383.26  Aligned_cols=197  Identities=52%  Similarity=0.862  Sum_probs=176.2

Q ss_pred             CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC--CCcceEec
Q 010166           35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD--PDRWEFAN  112 (516)
Q Consensus        35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~--~d~weF~h  112 (516)
                      ..+++|+.|||+||+||+++++|+|+++|++|||||+.+|++.+||+||||+||+|||||||+||||||+  +++|||+|
T Consensus        10 ~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n   89 (304)
T KOG0627|consen   10 SGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSN   89 (304)
T ss_pred             CCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecC
Confidence            3688999999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             CCcccCcccccccceeccCCCCCCCC-CccccccccCCcccchhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010166          113 EGFLRGQKHLLRSISRRKPAHGHGHQ-QSHQQNAQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQASDS  191 (516)
Q Consensus       113 ~~F~RG~~~LL~~IkRrk~~~~~~~~-q~qq~~~~~~s~~a~~E~g~~~LeeEve~LKrDk~~L~qELvrLRQqQq~~e~  191 (516)
                      ++|+||+++||++|+|||+.++.... ..............+++..+..++.++.+|+++++.|++|+++||++++.+++
T Consensus        90 ~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~  169 (304)
T KOG0627|consen   90 PCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRA  169 (304)
T ss_pred             hhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999998766421 01111111112234556677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHhh
Q 010166          192 QLQTMVQRLQGMEQRHQQMMAFLAKAVQSPGFLAQFVQQQ  231 (516)
Q Consensus       192 qLq~L~~RLq~mEqrQqqmmsFLak~lQ~P~fL~qlv~~~  231 (516)
                      +++.+.+++..++.+|++|+.|++++++.|.|+.++.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  209 (304)
T KOG0627|consen  170 TIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ  209 (304)
T ss_pred             HHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence            9999999999999999999999999999999999998754

>smart00415 HSF heat shock factor Back     alignment and domain information
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs [] Back     alignment and domain information
>COG5169 HSF1 Heat shock transcription factor [Transcription] Back     alignment and domain information
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription [] Back     alignment and domain information
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part Back     alignment and domain information
>smart00413 ETS erythroblast transformation specific domain Back     alignment and domain information
>KOG3806 consensus Predicted transcription factor [Transcription] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
2ldu_A125 Solution Nmr Structure Of Heat Shock Factor Protein 3e-23
1hks_A106 Solution Structure Of The Dna-Binding Domain Of Dro 2e-17
3hts_B102 Heat Shock Transcription FactorDNA COMPLEX Length = 2e-16
1fym_A92 Serendipitous Crystal Structure Containing The Heat 5e-16
1fbu_A90 Heat Shock Transcription Factor Dna Binding Domain 1e-15
1fyk_A92 Serendipitous Crystal Structure Containing The Heat 4e-15
1fbs_A90 Heat Shock Transcription Factor Dna Binding Domain 6e-15
1fbq_A90 Heat Shock Transcription Factor Dna Binding Domain 6e-15
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 11/103 (10%)
Query: 38  PPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNT 97
           P FL+K + +V D  TD+++ WSP+ NSF V++  +FA+++LPKYFKHNN +SFVRQLN 
Sbjct: 18  PAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNM 77
Query: 98  YGFRKV-----------DPDRWEFANEGFLRGQKHLLRSISRR 129
           YGFRKV           + D  EF +  FLRGQ+ LL +I R+
Sbjct: 78  YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106 Back     alignment and structure
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102 Back     alignment and structure
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92 Back     alignment and structure
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90 Back     alignment and structure
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92 Back     alignment and structure
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90 Back     alignment and structure
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
1hks_A106 Heat-shock transcription factor; transcription reg 6e-57
2ldu_A125 Heat shock factor protein 1; structural genomics, 2e-56
3hts_B102 Heat shock transcription factor; transcription reg 6e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106 Back     alignment and structure
 Score =  184 bits (468), Expect = 6e-57
 Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 35  NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQ 94
           +  P FL+K + +VDD  T+ ++ W+    SFV+ N  +FA++LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 95  LNTYGFRKV----------DPDRWEFANEGFLRGQKHLLRSISRR 129
           LN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125 Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
1hks_A106 Heat-shock transcription factor; transcription reg 100.0
2ldu_A125 Heat shock factor protein 1; structural genomics, 100.0
3hts_B102 Heat shock transcription factor; transcription reg 99.97
1awc_A110 Protein (GA binding protein alpha); complex (trans 85.46
1fli_A98 FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: 84.97
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 84.94
1bc8_C93 SAP-1, protein (SAP-1 ETS domain); DNA-binding dom 84.56
2ypr_A102 Protein FEV; transcription; 2.64A {Homo sapiens} P 84.35
4avp_A106 ETS translocation variant 1; transcription, transc 82.87
2nny_A171 C-ETS-1 protein, P54; protein-DNA complex, transcr 80.66
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Back     alignment and structure
Probab=100.00  E-value=6.6e-39  Score=279.75  Aligned_cols=95  Identities=43%  Similarity=0.806  Sum_probs=91.3

Q ss_pred             CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC----------
Q 010166           35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD----------  104 (516)
Q Consensus        35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~----------  104 (516)
                      +++|+|+.|||+||+|+++++||+|+++|++|||+|+.+|+++|||+||||+||+|||||||+|||||+.          
T Consensus         2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~   81 (106)
T 1hks_A            2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCC
Confidence            4578999999999999999999999999999999999999999999999999999999999999999984          


Q ss_pred             CCcceEecCCcccCcccccccceec
Q 010166          105 PDRWEFANEGFLRGQKHLLRSISRR  129 (516)
Q Consensus       105 ~d~weF~h~~F~RG~~~LL~~IkRr  129 (516)
                      ++.|+|+|++|+||+++||.+|+||
T Consensus        82 ~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCceEEECcCccCcCHHHHhhCcCC
Confidence            4789999999999999999999996
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Back     alignment and structure
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21 Back     alignment and structure
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C* Back     alignment and structure
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A Back     alignment and structure
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A Back     alignment and structure
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d1hksa_106 a.4.5.22 (A:) Heat-shock transcription factor {Dro 3e-44
d2htsa_92 a.4.5.22 (A:) Heat-shock transcription factor {Mil 3e-40
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score =  149 bits (377), Expect = 3e-44
 Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 10/105 (9%)

Query: 35  NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQ 94
           +  P FL+K + +VDD  T+ ++ W+    SFV+ N  +FA++LLP  +KHNN +SF+RQ
Sbjct: 2   SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQ 61

Query: 95  LNTYGFRKV----------DPDRWEFANEGFLRGQKHLLRSISRR 129
           LN YGF K+          D D  EF++  F R    LL  I R+
Sbjct: 62  LNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d1hksa_106 Heat-shock transcription factor {Drosophila melano 100.0
d2htsa_92 Heat-shock transcription factor {Milk yeast (Kluyv 99.95
d1pp7u_114 39 kda initiator binding protein, IBP39, N-termina 94.84
d1flia_98 Fli-1 {Human (Homo sapiens) [TaxId: 9606]} 89.02
d1awca_110 GA binding protein (GABP) alpha {Mouse (Mus muscul 88.94
d1hbxg_155 Serum response factor accessory protein 1a, SAP-1 88.23
d1duxc_86 Elk-1 {Human (Homo sapiens) [TaxId: 9606]} 86.19
d1gvja_142 ETS-1 transcription factor, residues 331-440 {Huma 85.11
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=100.00  E-value=1.1e-35  Score=257.13  Aligned_cols=95  Identities=43%  Similarity=0.806  Sum_probs=90.5

Q ss_pred             CCCCchHHHHHHhhcCCCCCCcEEEcCCCCeEEEeCCchhhhhhcccccCCCChhhhhhhcccCCceeeC----------
Q 010166           35 NAPPPFLSKTYDMVDDLATDSIVSWSPTSNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVD----------  104 (516)
Q Consensus        35 ~~~p~Fl~KLy~mv~dp~~~~iIsWs~~G~sFvI~d~~~F~k~VLPkyFkh~nfsSFvRQLN~YGFrKv~----------  104 (516)
                      +++|+|+.|||+||+|+++++||+|+++|++|+|+|+.+|+++|||+||+|+||+||+||||+|||+|+.          
T Consensus         2 ~~vp~F~~KL~~ml~~~~~~~iI~W~~~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~   81 (106)
T d1hksa_           2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFD   81 (106)
T ss_dssp             TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCT
T ss_pred             CCCCcHHHHHHHHHhCcCCCCEEEEcCCCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999983          


Q ss_pred             CCcceEecCCcccCcccccccceec
Q 010166          105 PDRWEFANEGFLRGQKHLLRSISRR  129 (516)
Q Consensus       105 ~d~weF~h~~F~RG~~~LL~~IkRr  129 (516)
                      ++.|+|+|++|+||+++||..|+||
T Consensus        82 ~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          82 RDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCccEEECccccCCCHHHHhhCcCC
Confidence            4578999999999999999999886
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Back     information, alignment and structure
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39, N-terminal domain {Trichomonas vaginalis [TaxId: 5722]} Back     information, alignment and structure
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure