Citrus Sinensis ID: 010173

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MEETEEETAALMAEKRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
cccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHc
cccccccccccccccccccccccHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEcEEEEcccHHHHHEEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHcc
MEETEEETAALMAEKRQKFEIETktreqdddlgshkNFRERIWNESKKIWEIAGpvilasgsefsITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSaletlsgqavgagrFDMLGIYLQRSFIVTGAtalclmpfyifATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTsgcfpdawtgfSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRvsnelgaghpkaaKFSIAVSVITSAAFGILFTLLVLAFEnqfpklftdkpilirETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYvfglpagallgygfklgiNGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
MEETEEETAALMaekrqkfeietktreqdddlgshknfRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
meeteeetaalmaeKRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
*************************************FRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNW*****
************************************NFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
***********MAEKRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
******************************DLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQK***
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MEETEEETAALMAEKRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEVN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.897 0.913 0.369 9e-93
Q9LUH2477 MATE efflux family protei no no 0.875 0.947 0.324 2e-67
Q9LUH3469 MATE efflux family protei no no 0.875 0.963 0.317 7e-63
Q8GXM8476 MATE efflux family protei no no 0.881 0.955 0.290 1e-54
Q9SIA5476 MATE efflux family protei no no 0.833 0.903 0.291 5e-54
Q9SIA3476 MATE efflux family protei no no 0.835 0.905 0.289 9e-54
Q9SIA4476 MATE efflux family protei no no 0.872 0.945 0.277 1e-49
Q9SIA1477 MATE efflux family protei no no 0.870 0.941 0.260 1e-44
Q5RFD2 570 Multidrug and toxin extru yes no 0.881 0.798 0.279 4e-43
Q8RWF5483 MATE efflux family protei no no 0.866 0.925 0.253 8e-43
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  341 bits (874), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 186/504 (36%), Positives = 286/504 (56%), Gaps = 41/504 (8%)

Query: 15  KRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFV 74
           +R   EIE   R +   +      +  +W ESK +W ++G  I+ S   + ++FVT  F 
Sbjct: 22  ERSSPEIEEFLRRRGSTVTPRWWLKLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFT 80

Query: 75  GHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVT 134
           GHLG ++ A  S+    I+G  YGIMLGM SA++T+ GQA GA ++  +GI  QR+ ++ 
Sbjct: 81  GHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLH 140

Query: 135 GATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSR 194
            A A+ L   Y ++ P LK + Q   I+     +++ ++PQ++A+A+  P+Q+FLQ+Q+ 
Sbjct: 141 LAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNI 200

Query: 195 VWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVV--GLVVYVTSGCFP 252
           V  +  +S+   + H  L W++   L++G++GAA+    S WL+V   G+ + ++  C  
Sbjct: 201 VNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNC-K 259

Query: 253 DAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMN 312
           + WTGFS RAF+ +  + KL++ASAVMLCLE+WY   ++++ G L+NP I++DAISICM 
Sbjct: 260 ETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMY 319

Query: 313 LQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQ 372
              W +   LG   AISVRVSNELGAG+P+ A  S+ V  IT+     +  ++VL F   
Sbjct: 320 YLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVG 379

Query: 373 FPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDL 432
             K FT    +I   S L   LA +IFLN IQ +L                         
Sbjct: 380 LSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPIL------------------------- 414

Query: 433 RLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLL 492
                       +GVA+G+GWQ +VA +++  YYV GLP G +LG+   LG+ GIW G++
Sbjct: 415 ------------SGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMI 462

Query: 493 LGCLFQTTVLVIRMLQTNWQKEVN 516
            G + QT  L++  L+TNW  EV 
Sbjct: 463 AGVILQTLTLIVLTLKTNWTSEVE 486
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
255556131496 multidrug resistance pump, putative [Ric 0.903 0.939 0.628 0.0
413952312554 putative MATE efflux family protein [Zea 0.862 0.803 0.538 1e-150
226493574490 uncharacterized protein LOC100280263 [Ze 0.862 0.908 0.538 1e-150
242058815487 hypothetical protein SORBIDRAFT_03g03561 0.850 0.901 0.542 1e-148
357136603475 PREDICTED: protein TRANSPARENT TESTA 12- 0.868 0.943 0.525 1e-143
326501804481 predicted protein [Hordeum vulgare subsp 0.850 0.912 0.554 1e-141
297597671477 Os01g0766000 [Oryza sativa Japonica Grou 0.854 0.924 0.551 1e-140
115454205477 Os03g0626700 [Oryza sativa Japonica Grou 0.848 0.918 0.522 1e-140
357121098492 PREDICTED: protein TRANSPARENT TESTA 12- 0.905 0.949 0.501 1e-140
218189114477 hypothetical protein OsI_03865 [Oryza sa 0.854 0.924 0.549 1e-139
>gi|255556131|ref|XP_002519100.1| multidrug resistance pump, putative [Ricinus communis] gi|223541763|gb|EEF43311.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/509 (62%), Positives = 393/509 (77%), Gaps = 43/509 (8%)

Query: 6   EETAALMAEKRQKFEIETKTREQDDDLGSHKNFRERIWNESKKIWEIAGPVILASGSEFS 65
           EE A+ + E+    E++     + + +       +R W+ESK++WEIA P ++ + ++FS
Sbjct: 3   EEKASSIQERHFGLEMQVTEPMRKEKM------VKRSWDESKRMWEIAAPAMITAVTQFS 56

Query: 66  ITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFDMLGI 125
           I FVT+A+VGHLGEVE AAVS+VQNVIEGFVYG+MLGMGSALETL GQAVGAG+ +MLG+
Sbjct: 57  IGFVTSAYVGHLGEVELAAVSIVQNVIEGFVYGVMLGMGSALETLCGQAVGAGQLNMLGV 116

Query: 126 YLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPI 185
           Y+Q+S+I+TG  AL L PFYIFA+P L+LL QDK+ISELAGKYS W++PQLFA+AIN PI
Sbjct: 117 YMQKSWIITGVAALFLAPFYIFASPLLQLLHQDKDISELAGKYSIWVLPQLFAFAINFPI 176

Query: 186 QKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGIVGAAIAGDISLWLMVVGLVVY 245
           QKFLQ+QSRVWVMT+IS+ AL FHV LNW+LV KL++G++GAAIAG+IS  ++V+  +VY
Sbjct: 177 QKFLQAQSRVWVMTIISVIALAFHVLLNWLLVTKLDHGLLGAAIAGNISWLVIVLAQIVY 236

Query: 246 VTSGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVD 305
           V SG FP+AWTGFS  AFKSLA FVKLSLASAVMLCLELWY+TAVILMVGWL NPEIAVD
Sbjct: 237 VVSGFFPEAWTGFSCSAFKSLAGFVKLSLASAVMLCLELWYFTAVILMVGWLKNPEIAVD 296

Query: 306 AISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLL 365
           AISICMNLQ WTLMI+LGF+ AISVRVSNELGAG+PKAAKFS+ V+V+TS   G+LFT +
Sbjct: 297 AISICMNLQLWTLMIALGFNAAISVRVSNELGAGNPKAAKFSVMVTVLTSTILGVLFTAV 356

Query: 366 VLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQ 425
           +LA +N+FPK+FT KP +++E SKL YFLAATIFLNSIQ VL                  
Sbjct: 357 ILATKNEFPKVFTGKPAVMQEASKLGYFLAATIFLNSIQPVL------------------ 398

Query: 426 KNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGIN 485
                               GVAVGAGWQ  VALI+IACYY+ GLP GA+LGY FKLG+ 
Sbjct: 399 -------------------HGVAVGAGWQLSVALINIACYYIVGLPIGAVLGYKFKLGVK 439

Query: 486 GIWSGLLLGCLFQTTVLVIRMLQTNWQKE 514
           GIWSG+L GC+ Q  +L+  ML+TNW KE
Sbjct: 440 GIWSGMLAGCVLQIVILIFIMLRTNWNKE 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|413952312|gb|AFW84961.1| putative MATE efflux family protein [Zea mays] Back     alignment and taxonomy information
>gi|226493574|ref|NP_001146663.1| uncharacterized protein LOC100280263 [Zea mays] gi|219888227|gb|ACL54488.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|242058815|ref|XP_002458553.1| hypothetical protein SORBIDRAFT_03g035610 [Sorghum bicolor] gi|241930528|gb|EES03673.1| hypothetical protein SORBIDRAFT_03g035610 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357136603|ref|XP_003569893.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326501804|dbj|BAK06394.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|297597671|ref|NP_001044353.2| Os01g0766000 [Oryza sativa Japonica Group] gi|57899572|dbj|BAD87151.1| integral membrane protein-like [Oryza sativa Japonica Group] gi|255673715|dbj|BAF06267.2| Os01g0766000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115454205|ref|NP_001050703.1| Os03g0626700 [Oryza sativa Japonica Group] gi|16924114|gb|AAL31693.1|AC092390_14 putative multidrug efflux protein [Oryza sativa Japonica Group] gi|37718791|gb|AAR01662.1| putative MATE efflux family protein [Oryza sativa Japonica Group] gi|108709922|gb|ABF97717.1| MATE efflux family protein, expressed [Oryza sativa Japonica Group] gi|113549174|dbj|BAF12617.1| Os03g0626700 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357121098|ref|XP_003562258.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218189114|gb|EEC71541.1| hypothetical protein OsI_03865 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.724 0.772 0.518 2.5e-121
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.761 0.763 0.468 1.6e-117
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.705 0.671 0.468 3.4e-113
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.724 0.769 0.449 7.3e-105
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.740 0.778 0.424 1.2e-102
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.732 0.765 0.432 7.5e-101
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.718 0.758 0.425 2e-100
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.732 0.765 0.429 2.5e-100
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.705 0.726 0.433 1.2e-98
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.740 0.773 0.426 1.6e-98
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 990 (353.6 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
 Identities = 194/374 (51%), Positives = 259/374 (69%)

Query:    36 KNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGF 95
             K + +    ESK++WE+AGP I  + S++S+  +T  F G LGE+E AAVSV  +VI G 
Sbjct:    26 KVWAKEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAVSVENSVISGL 85

Query:    96 VYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLL 155
              +G+MLGMGSALETL GQA GAG+  M+GIY+QRS+++   TAL L+P YI+A P L   
Sbjct:    86 AFGVMLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYIWAPPILSFF 145

Query:   156 SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWI 215
              +   IS+ AGK++ W++PQLFAYA N PIQKFLQSQ +V VM  IS   L+ H   +W+
Sbjct:   146 GEAPHISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFSWL 205

Query:   216 LVAKLNYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDAWTGFSLRAFKSLASFVKLSLA 275
              +    +G+VGAAI  + S WL+V+G ++Y+       AWTGFS+ AF+ L  FVKLSLA
Sbjct:   206 FILYFKWGLVGAAITLNTSWWLIVIGQLLYILITKSDGAWTGFSMLAFRDLYGFVKLSLA 265

Query:   276 SAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNE 335
             SA+MLCLE WY   ++++ G L NP I VDAISICMN++ WT MIS+GF+ AISVRVSNE
Sbjct:   266 SALMLCLEFWYLMVLVVVTGLLPNPLIPVDAISICMNIEGWTAMISIGFNAAISVRVSNE 325

Query:   336 LGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLA 395
             LGAG+   AKFS+ V  ITS   GI+  ++VLA ++ FP LFT    +  ET+++A  L 
Sbjct:   326 LGAGNAALAKFSVIVVSITSTLIGIVCMIVVLATKDSFPYLFTSSEAVAAETTRIAVLLG 385

Query:   396 ATIFLNSIQAVLLG 409
              T+ LNS+Q VL G
Sbjct:   386 FTVLLNSLQPVLSG 399
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-144
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 7e-56
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 5e-55
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-53
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-39
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 4e-36
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-31
pfam01554161 pfam01554, MatE, MatE 2e-29
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-29
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-24
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-24
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 5e-24
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-19
pfam01554161 pfam01554, MatE, MatE 5e-19
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 5e-19
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-19
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-18
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 6e-14
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-12
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 5e-12
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 5e-12
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-11
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-11
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 6e-11
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-10
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-09
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-09
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-08
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 4e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-06
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-06
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 1e-05
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 2e-05
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-05
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 7e-05
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 3e-04
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 4e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.002
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 0.002
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 0.002
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 0.002
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  422 bits (1087), Expect = e-144
 Identities = 174/472 (36%), Positives = 269/472 (56%), Gaps = 39/472 (8%)

Query: 45  ESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMG 104
           E+KK+  +A P++L S  ++S++ V+  FVGHLG++E AA S+  +      + I+LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 105 SALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISEL 164
           SAL+TL GQA GA  + ++G+YLQR+ ++     + +   ++   P L LL QD EI+ L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 165 AGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWILVAKLNYGI 224
           AG+Y +W++P LFAYA+  P++++LQ+Q  V  +  IS+ AL+ ++ LN++LV  L  G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 225 VGAAIAGDISLWLMVVGLVVYVT-SGCFPDAWTGFSLRAFKSLASFVKLSLASAVMLCLE 283
           +GAA+A  IS WL+VV L++Y+  S      W GFS  AF+    F+KL++ SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 284 LWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKA 343
            W +  ++L+ G L    +A+ A SIC+       MI LG   A SVRV NELGAG+PK 
Sbjct: 241 WWAFEILVLLAGLL-PGTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 344 AKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSI 403
           AK +  V++I S   G++  +L+L   + +  LFT    +I   + L   LA     + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 404 QAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVAVGAGWQFLVALISIA 463
           QAVL                                     +GV  G G Q L A +++ 
Sbjct: 360 QAVL-------------------------------------SGVLRGCGRQKLGAYVNLV 382

Query: 464 CYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKEV 515
            YY+ GLP G LL +   LG+ G+W GL+ G + Q  +L++ +L+T+W KE 
Sbjct: 383 AYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAVILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.94
PRK00187464 multidrug efflux protein NorA; Provisional 99.87
PRK10189478 MATE family multidrug exporter; Provisional 99.87
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.86
PRK01766456 multidrug efflux protein; Reviewed 99.85
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.84
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.84
TIGR01695502 mviN integral membrane protein MviN. This model re 99.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.75
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.72
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.71
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.7
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.69
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.66
PRK10459492 colanic acid exporter; Provisional 99.65
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.65
PRK15099416 O-antigen translocase; Provisional 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.57
COG2244480 RfbX Membrane protein involved in the export of O- 99.52
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.09
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.05
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.9
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.82
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.26
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.26
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.98
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.77
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.62
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.54
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.37
COG4267467 Predicted membrane protein [Function unknown] 96.36
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-53  Score=445.90  Aligned_cols=432  Identities=26%  Similarity=0.398  Sum_probs=410.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 010173           42 IWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGRFD  121 (516)
Q Consensus        42 ~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~~~  121 (516)
                      .++..|+++++++|++++++.+.+++.+|+.++||+|++++++.++++++..++ ..+..|++.++.+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            566899999999999999999999999999999999999999999999999987 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 010173          122 MLGIYLQRSFIVTGATALCLMPF-YIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTM  200 (516)
Q Consensus       122 ~~~~~~~~~l~~~~~~~l~~~i~-~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~~  200 (516)
                      ++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..+...+.+.+|+.||+|.++.
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777766 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-hC-cchhHHHHHHHHHHHHHHHHHHHHHHhCCC--CcccccCCHHHHHHHHHHHHHHHHH
Q 010173          201 ISMAALIFHVFLNWILVAK-LN-YGIVGAAIAGDISLWLMVVGLVVYVTSGCF--PDAWTGFSLRAFKSLASFVKLSLAS  276 (516)
Q Consensus       201 ~~ii~~~l~i~l~~lli~~-~~-~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~i~~~~~p~  276 (516)
                      .+++++++|+++|+++++. ++ +|+.|+++||++++.+.+++..+++.+++.  .....+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999988742  2322333334568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 010173          277 AVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSVITSA  356 (516)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (516)
                      +++...+...+...+.+++++|  ++++|+|+++.++.++..++..|++++.++++++++|+||+|++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999  77999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHHHHHH
Q 010173          357 AFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKS  436 (516)
Q Consensus       357 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (516)
                      .+++..++++.++++++.++|++|+++.+.+..++++.+...++++++.+..+                           
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g---------------------------  381 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG---------------------------  381 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence            99999999999999999999999999999999999999999999999999999                           


Q ss_pred             HHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 010173          437 YLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYGFKLGINGIWSGLLLGCLFQTTVLVIRMLQTNWQKE  514 (516)
Q Consensus       437 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (516)
                                .+||.||++.++++++.+.|++.+|+.+++..++ +|..|+|+++..++.+..++..+++++++|+++
T Consensus       382 ----------~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (455)
T COG0534         382 ----------VLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK  448 (455)
T ss_pred             ----------HHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                      9999999999999999999999999999998766 999999999999999999999999999999875

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-19
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 1e-09
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/473 (22%), Positives = 197/473 (41%), Gaps = 56/473 (11%)
Query: 36  KNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNV-IEG 94
           +N   R   E+  + ++A PV++AS ++  + FV     G +  ++ AAVS+  ++ +  
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS 60
Query: 95  FVYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFL-K 153
            ++G+  G+  AL  +  Q  GAGR   +   + +  I+    ++ ++   +F T F+ +
Sbjct: 61  ILFGV--GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIR 117
Query: 154 LLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLN 213
            +  ++ ++     Y   ++  + AY +   ++ F    S      +I    L+ ++ LN
Sbjct: 118 FMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN 177
Query: 214 WILV----AKLNYGIVGAAIAGDISLWLMVVGLVVYVTSG---CFPDAWTGFSLRAFKSL 266
           WI V         G VG  +A  I  W+M++ L+ Y+ +         +  F     K L
Sbjct: 178 WIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKEL 237
Query: 267 ASFVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHT 326
               +L    A  L  E+  +  V L+V  L +  +A  A  + +N      M  +    
Sbjct: 238 IRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGA 295
Query: 327 AISVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRE 386
           A+S+RV ++LG    K A  +  V ++T  A   +  LL + F  Q   L+T+  +++  
Sbjct: 296 AVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVAL 355
Query: 387 TSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAG 446
             +L  F A    ++++Q V  G+                     LR    +  IF+   
Sbjct: 356 AMQLLLFAAIYQCMDAVQVVAAGS---------------------LRGYKDMTAIFH--- 391
Query: 447 VAVGAGWQFLVALISIACYYVFGLPAGALLGYGF-----KLGINGIWSGLLLG 494
                         +   Y+V GLP G +LG         LG  G W G ++G
Sbjct: 392 -------------RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 4e-77
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  248 bits (636), Expect = 4e-77
 Identities = 104/483 (21%), Positives = 192/483 (39%), Gaps = 52/483 (10%)

Query: 36  KNFRERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGF 95
           +N   R   E+  + ++A PV++AS ++  + FV     G +  ++ AAVS+  ++    
Sbjct: 1   ENSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW-LP 59

Query: 96  VYGIMLGMGSALETLSGQAVGAGRFDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLL 155
                +G+  AL  +  Q  GAGR   +   + +  I+    ++ ++         ++ +
Sbjct: 60  SILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFM 119

Query: 156 SQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMTMISMAALIFHVFLNWI 215
             ++ ++     Y   ++  + AY +   ++ F    S      +I    L+ ++ LNWI
Sbjct: 120 DVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179

Query: 216 LVAKL----NYGIVGAAIAGDISLWLMVVGLVVYV-TSGCFPD--AWTGFSLRAFKSLAS 268
            V         G VG  +A  I  W+M++ L+ Y+ TS        +  F     K L  
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239

Query: 269 FVKLSLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAI 328
             +L    A  L  E+  +  V L+V  L +  +A  A  + +N      M  +    A+
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297

Query: 329 SVRVSNELGAGHPKAAKFSIAVSVITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETS 388
           S+RV ++LG    K A  +  V ++T  A   +  LL + F  Q   L+T+  +++    
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357

Query: 389 KLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDLRLKSYLRKIFNIAGVA 448
           +L  F A    ++++Q V  G+                     LR               
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGS---------------------LR--------------- 381

Query: 449 VGAGWQFLVALISIACYYVFGLPAGALLGY-----GFKLGINGIWSGLLLGCLFQTTVLV 503
            G      +   +   Y+V GLP G +LG         LG  G W G ++G      +L 
Sbjct: 382 -GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440

Query: 504 IRM 506
            R+
Sbjct: 441 QRL 443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.83
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=3.2e-46  Score=391.96  Aligned_cols=431  Identities=23%  Similarity=0.384  Sum_probs=395.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 010173           40 ERIWNESKKIWEIAGPVILASGSEFSITFVTAAFVGHLGEVEFAAVSVVQNVIEGFVYGIMLGMGSALETLSGQAVGAGR  119 (516)
Q Consensus        40 ~~~~~~~k~il~~a~p~~l~~~~~~l~~~v~~~~i~~lg~~~v~a~~ia~~i~~l~~~~~~~gl~~a~~~~va~~~g~~~  119 (516)
                      ...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34567889999999999999999999999999999999999999999999998765 77889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 010173          120 FDMLGIYLQRSFIVTGATALCLMPFYIFATPFLKLLSQDKEISELAGKYSKWIVPQLFAYAINSPIQKFLQSQSRVWVMT  199 (516)
Q Consensus       120 ~~~~~~~~~~~l~~~~~~~l~~~i~~l~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~l~~~~~~~l~a~g~~~~~~  199 (516)
                      +|+.++.++.++.+..+++++..++.++.+++..+++.+++..+.+..|+++..++.++..+.....+.+++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998877667788899888888989899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-h---CcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc---cccCCHHHHHHHHHHHHH
Q 010173          200 MISMAALIFHVFLNWILVAK-L---NYGIVGAAIAGDISLWLMVVGLVVYVTSGCFPDA---WTGFSLRAFKSLASFVKL  272 (516)
Q Consensus       200 ~~~ii~~~l~i~l~~lli~~-~---~~Gv~Gaaia~~i~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~i~~~  272 (516)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..+++++++...+   ++++...+++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   6999999999999999999998888877532211   122222334778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 010173          273 SLASAVMLCLELWYYTAVILMVGWLNNPEIAVDAISICMNLQQWTLMISLGFHTAISVRVSNELGAGHPKAAKFSIAVSV  352 (516)
Q Consensus       273 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  352 (516)
                      ++|..++.+.+.+...+++.+++++|  ++++++|++++++.++..++..+++++..|.+++++|+||++++++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999996  6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHchhhhhcccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhhhhhhhhhHHHH
Q 010173          353 ITSAAFGILFTLLVLAFENQFPKLFTDKPILIRETSKLAYFLAATIFLNSIQAVLLGNCYYARQILSLSISVQKNVVQDL  432 (516)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (516)
                      +++..++++.++++.++++++..+|++|+++.+.+..++++++++.++.+++.+..+                       
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------------  378 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG-----------------------  378 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence            999999999999999999999999999888899999999999999999999999999                       


Q ss_pred             HHHHHHhhhhhhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHhh----cC-CchhHHHHHHHHHHHHHHHHHHHHHh
Q 010173          433 RLKSYLRKIFNIAGVAVGAGWQFLVALISIACYYVFGLPAGALLGYG----FK-LGINGIWSGLLLGCLFQTTVLVIRML  507 (516)
Q Consensus       433 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~-~g~~g~~~~~~~~~~~~~~~~~~~~~  507 (516)
                                    ++++.||++.+++.++.+.|++++|+++++.+.    ++ +|+.|+|+++.+++++..++..++++
T Consensus       379 --------------~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~  444 (460)
T 3mkt_A          379 --------------SLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLY  444 (460)
T ss_dssp             --------------HHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             --------------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                          999999999999999999999999999999876    66 99999999999999999988877776


Q ss_pred             hhc
Q 010173          508 QTN  510 (516)
Q Consensus       508 ~~~  510 (516)
                      |+.
T Consensus       445 ~~~  447 (460)
T 3mkt_A          445 WLQ  447 (460)
T ss_dssp             SSC
T ss_pred             HHH
Confidence            643
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00