Citrus Sinensis ID: 010177

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
cccccccccccccccccccccccccccccccEEccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccEEEHcccccEEEEcccccHHHcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccEEEcccccEEEEcccEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEcccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEccccccccccccccccc
mkkedapdkgrtlsvdpnvprwvcqncrhflcivgvdsyadkylndssrstmhgssihasnsvlgstrmdnsfvvlpkqrpqshgvpprprgssaqseasqsgkamdESFVVIYKsesasdgggphipppeggtngpmqpnnsgfhSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTnvlndafpiwhdgefgtinnfrlgrlpkipvewDEINAAWGQACLLLHTMCqyfrpkfpyrikiipmgsyprimdsnnntyelfgpvnlfwsTRYDKAMTLFLSCLKDFAEfanskdqennippdkcfklpykiendkvenySITQSFNKQENWTKALKYTLCNLKWALFWFVgntnfqpvsamsspaeVSAVGSLYAkrgadlksvgrnlskp
mkkedapdkgrtlsvdpnvprwVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQrpqshgvpprprgssAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSqtqveqplCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFanskdqennippdkcFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAkrgadlksvgrnlskp
MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRgssaqseasqsgKAMDESFVVIYKSESASDgggphipppeggTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLkeklkieeeerkleaaieeteKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
*****************NVPRWVCQNCRHFLCIVGVDSYADKYL******************************************************************VVI********************************HSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL**********************************************FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN*********PDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQP**********************************
*****************NVPRWVCQNCRHFLCIVGVDSYAD****************************************************************************************************************RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL****************************************************************YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN************CFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV*****************************************
************LSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPK***************************MDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
*************SVDPNVPRWVCQNCRHFLCIVGVDSYADKYL****************************************************************SF****K*****************************FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT**************************************
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MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q9M367517 Beclin-1-like protein OS= yes no 0.978 0.976 0.785 0.0
Q54JI9855 Beclin-1-like protein B O yes no 0.602 0.363 0.389 1e-60
Q6GP52445 Beclin-1 OS=Xenopus laevi N/A no 0.746 0.865 0.325 1e-59
Q4A1L3445 Beclin-1 OS=Xenopus tropi yes no 0.746 0.865 0.325 3e-59
Q5ZKS6447 Beclin-1 OS=Gallus gallus yes no 0.738 0.852 0.327 5e-57
O88597448 Beclin-1 OS=Mus musculus yes no 0.736 0.848 0.328 5e-57
Q91XJ1448 Beclin-1 OS=Rattus norveg yes no 0.736 0.848 0.328 7e-57
Q4A1L4448 Beclin-1 OS=Bos taurus GN yes no 0.773 0.890 0.326 2e-56
Q14457450 Beclin-1 OS=Homo sapiens yes no 0.740 0.848 0.324 2e-56
Q4A1L5448 Beclin-1 OS=Sus scrofa GN yes no 0.769 0.886 0.326 2e-56
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2 Back     alignment and function desciption
 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/508 (78%), Positives = 440/508 (86%), Gaps = 3/508 (0%)

Query: 1   MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHAS 60
           M+KE+ PDK RT+ +DPN+P+WVCQNC H L IVGVDSYA K+ ND   S   GSSIH +
Sbjct: 1   MRKEEIPDKSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGA 60

Query: 61  NSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRG-SSAQSEASQSGKAMDESFVVIYKSES 118
           NSVLGSTRMDNSFVVLP+ +P QS G+PPRPRG SS Q +A+QSGKAM+ESFVV+YKSE 
Sbjct: 61  NSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFVVVYKSEP 120

Query: 119 ASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLS 178
            SD GG H    E G NGP+  N SGF++TI VL RAF+IA +QTQVEQPLCLECMRVLS
Sbjct: 121 VSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLS 180

Query: 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238
           DKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFLKEK KIEEEERKL AAIEETEK
Sbjct: 181 DKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEK 240

Query: 239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298
           QNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIEVSQAHLEL
Sbjct: 241 QNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLEL 300

Query: 299 LKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRP 358
           L +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLHTMC YFRP
Sbjct: 301 LNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRP 360

Query: 359 KFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 418
           KF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKDFA+FANSK
Sbjct: 361 KFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDFADFANSK 420

Query: 419 DQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 478
           DQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWAL+WFVGNT
Sbjct: 421 DQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWALYWFVGNT 480

Query: 479 NFQPVSA-MSSPAEVSAVGSLYAKRGAD 505
           NFQP+SA +S P+ +SA GSLYAKRG D
Sbjct: 481 NFQPLSATVSLPSNISAAGSLYAKRGPD 508

Arabidopsis thaliana (taxid: 3702)
>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3 SV=1 Back     alignment and function description
>sp|Q6GP52|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|Q4A1L3|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZKS6|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|O88597|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3 Back     alignment and function description
>sp|Q91XJ1|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1 Back     alignment and function description
>sp|Q4A1L4|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|Q14457|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2 Back     alignment and function description
>sp|Q4A1L5|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
225454518522 PREDICTED: beclin 1 protein [Vitis vinif 0.994 0.982 0.836 0.0
73587480505 beclin 1 protein [Malus x domestica] 0.970 0.992 0.816 0.0
224067974516 predicted protein [Populus trichocarpa] 0.990 0.990 0.822 0.0
255564727523 Beclin-1, putative [Ricinus communis] gi 1.0 0.986 0.822 0.0
73587476511 beclin 1 protein [Gossypium raimondii] 0.988 0.998 0.823 0.0
351724517509 beclin 1 protein [Glycine max] gi|735874 0.984 0.998 0.808 0.0
357456733517 Beclin 1 protein [Medicago truncatula] g 0.982 0.980 0.822 0.0
357456731567 Beclin 1 protein [Medicago truncatula] g 0.982 0.894 0.737 0.0
73587482508 beclin 1 protein [Medicago truncatula] 0.980 0.996 0.817 0.0
356508412509 PREDICTED: beclin-1-like protein-like is 0.984 0.998 0.810 0.0
>gi|225454518|ref|XP_002277370.1| PREDICTED: beclin 1 protein [Vitis vinifera] gi|297745431|emb|CBI40511.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/520 (83%), Positives = 468/520 (90%), Gaps = 7/520 (1%)

Query: 4   EDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHASNSV 63
           ED+ +K RT  VDP +PRWVCQNCRH LCIVGVDSYADK+ +DSSRS M GS IH + SV
Sbjct: 3   EDSANKSRTFPVDPTLPRWVCQNCRHNLCIVGVDSYADKFYSDSSRSGMQGSLIHGAGSV 62

Query: 64  LGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVV-------IYKS 116
           LGST MD+SFVVLPKQR Q+ GVPPRPRG + Q + SQSGKAM+ESFV+       +YK 
Sbjct: 63  LGSTHMDHSFVVLPKQRNQAQGVPPRPRGGAVQPDVSQSGKAMEESFVMLPPAPASVYKC 122

Query: 117 ESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRV 176
           ESA++G G H+P PEGG +G +QPNNSGFH+TITVLKRAF+IAT+Q QVEQPLCLECMRV
Sbjct: 123 ESAAEGSGTHLPSPEGGPSGHLQPNNSGFHTTITVLKRAFDIATTQIQVEQPLCLECMRV 182

Query: 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEET 236
           LSDKLDKEV+DV RDI+AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEET
Sbjct: 183 LSDKLDKEVEDVNRDIQAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEET 242

Query: 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296
           EKQ A+VNAE+KELELKS RFKELEERYW EFNNFQFQL +HQEERDAI +KIEVSQAHL
Sbjct: 243 EKQCAQVNAEMKELELKSSRFKELEERYWHEFNNFQFQLTSHQEERDAILAKIEVSQAHL 302

Query: 297 ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356
           ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTM QYF
Sbjct: 303 ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMVQYF 362

Query: 357 RPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN 416
           RPKF YRIKIIPMGSYPRI DSNN+TYELFGPVNLFWSTRYDKAMTLFL+CLKDFA+FAN
Sbjct: 363 RPKFQYRIKIIPMGSYPRITDSNNSTYELFGPVNLFWSTRYDKAMTLFLTCLKDFADFAN 422

Query: 417 SKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVG 476
           SKDQENNIPP+KCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWAL+WFVG
Sbjct: 423 SKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALYWFVG 482

Query: 477 NTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP 516
           NTNFQP+SAM S  EVSAVGSLY KR AD KS  RN S P
Sbjct: 483 NTNFQPLSAMVSSPEVSAVGSLYTKRIADSKSEARNSSSP 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|73587480|emb|CAJ27522.1| beclin 1 protein [Malus x domestica] Back     alignment and taxonomy information
>gi|224067974|ref|XP_002302626.1| predicted protein [Populus trichocarpa] gi|222844352|gb|EEE81899.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564727|ref|XP_002523358.1| Beclin-1, putative [Ricinus communis] gi|223537446|gb|EEF39074.1| Beclin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|73587476|emb|CAJ27520.1| beclin 1 protein [Gossypium raimondii] Back     alignment and taxonomy information
>gi|351724517|ref|NP_001238340.1| beclin 1 protein [Glycine max] gi|73587474|emb|CAJ27519.1| beclin 1 protein [Glycine max] Back     alignment and taxonomy information
>gi|357456733|ref|XP_003598647.1| Beclin 1 protein [Medicago truncatula] gi|355487695|gb|AES68898.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357456731|ref|XP_003598646.1| Beclin 1 protein [Medicago truncatula] gi|355487694|gb|AES68897.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|73587482|emb|CAJ27523.1| beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508412|ref|XP_003522951.1| PREDICTED: beclin-1-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2076715517 ATG6 "AT3G61710" [Arabidopsis 0.978 0.976 0.722 3.2e-200
DICTYBASE|DDB_G0288021855 atg6B "autophagy protein Apg6 0.633 0.382 0.354 9.2e-55
MGI|MGI:1891828448 Becn1 "beclin 1, autophagy rel 0.593 0.683 0.358 3.8e-53
UNIPROTKB|Q14457450 BECN1 "Beclin-1" [Homo sapiens 0.593 0.68 0.355 6.3e-53
UNIPROTKB|Q4A1L4448 BECN1 "Beclin-1" [Bos taurus ( 0.593 0.683 0.355 8e-53
UNIPROTKB|E2RNW7463 AARSD1 "Uncharacterized protei 0.593 0.660 0.355 8e-53
UNIPROTKB|Q4A1L5448 BECN1 "Beclin-1" [Sus scrofa ( 0.593 0.683 0.355 8e-53
UNIPROTKB|Q5R878450 BECN1 "Beclin-1" [Pongo abelii 0.593 0.68 0.355 8e-53
UNIPROTKB|F1S1F6448 BECN1 "Beclin-1" [Sus scrofa ( 0.593 0.683 0.355 2.1e-52
UNIPROTKB|Q6GP52445 becn1 "Beclin-1" [Xenopus laev 0.593 0.687 0.355 2.7e-52
TAIR|locus:2076715 ATG6 "AT3G61710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1938 (687.3 bits), Expect = 3.2e-200, P = 3.2e-200
 Identities = 367/508 (72%), Positives = 406/508 (79%)

Query:     1 MKKEDAPDKGRTLSVDPNVPRWVCQNCRHFLCIVGVDSYADKYLNDSSRSTMHGSSIHAS 60
             M+KE+ PDK RT+ +DPN+P+WVCQNC H L IVGVDSYA K+ ND   S   GSSIH +
Sbjct:     1 MRKEEIPDKSRTIPIDPNLPKWVCQNCHHSLTIVGVDSYAGKFFNDPPPSATQGSSIHGA 60

Query:    61 NSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRXXXXXX-XXXXXXKAMDESFVVIYKSES 118
             NSVLGSTRMDNSFVVLP+ +P QS G+PPRPR             KAM+ESFVV+YKSE 
Sbjct:    61 NSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFVVVYKSEP 120

Query:   119 ASDXXXXXXXXXXXXTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLS 178
              SD             NGP+  N SGF++TI VL RAF+IA +QTQVEQPLCLECMRVLS
Sbjct:   121 VSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCLECMRVLS 180

Query:   179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLXXXXXXXXXXXXXXXXXXXXXK 238
             DKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFL                     K
Sbjct:   181 DKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVAAIEETEK 240

Query:   239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298
             QNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIEVSQAHLEL
Sbjct:   241 QNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLEL 300

Query:   299 LKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRP 358
             L +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLHTMC YFRP
Sbjct:   301 LNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHTMCNYFRP 360

Query:   359 KFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 418
             KF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKDFA+FANSK
Sbjct:   361 KFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDFADFANSK 420

Query:   419 DQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 478
             DQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWAL+WFVGNT
Sbjct:   421 DQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWALYWFVGNT 480

Query:   479 NFQPVSA-MSSPAEVSAVGSLYAKRGAD 505
             NFQP+SA +S P+ +SA GSLYAKRG D
Sbjct:   481 NFQPLSATVSLPSNISAAGSLYAKRGPD 508
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006914 "autophagy" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0000045 "autophagic vacuole assembly" evidence=IGI
GO:0000407 "pre-autophagosomal structure" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009846 "pollen germination" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IEP
DICTYBASE|DDB_G0288021 atg6B "autophagy protein Apg6 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1891828 Becn1 "beclin 1, autophagy related" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q14457 BECN1 "Beclin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L4 BECN1 "Beclin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNW7 AARSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L5 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R878 BECN1 "Beclin-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1F6 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GP52 becn1 "Beclin-1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M367BECN1_ARATHNo assigned EC number0.78540.97860.9767yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
pfam04111356 pfam04111, APG6, Autophagy protein Apg6 2e-76
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 7e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 1e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 6e-05
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 2e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 5e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-04
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
pfam12325121 pfam12325, TMF_TATA_bd, TATA element modulatory fa 0.001
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.002
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.003
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 0.003
PRK00409782 PRK00409, PRK00409, recombination and DNA strand e 0.004
pfam04156186 pfam04156, IncA, IncA protein 0.004
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6 Back     alignment and domain information 
 Score =  244 bits (624), Expect = 2e-76
 Identities = 122/356 (34%), Positives = 187/356 (52%), Gaps = 40/356 (11%)

Query: 149 ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD 208
           +  +   F+I +SQT ++ PLC EC  +L ++LD E+ D  ++ + Y+  L +LE +  +
Sbjct: 2   VKAMTNLFDILSSQTNIDHPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVE 61

Query: 209 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268
           + +      E  ++++EE +L   +EE EK++ +++ EL EL+ + ++ +  E +Y +E+
Sbjct: 62  ISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREY 121

Query: 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 328
           N F    +  ++   ++  + E S   L+ L++TN+ N  F I H G F TIN  RLGRL
Sbjct: 122 NLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTNIFNATFHISHSGPFATINGLRLGRL 181

Query: 329 PKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRI--MDSNNNTYE-- 384
           P + V W EINAAWGQ  LLL  + +     F  R +++P GS+  I  +  N+  Y   
Sbjct: 182 PSVVVPWKEINAAWGQTVLLLAALAKKLGLNFV-RYRLVPFGSHSYIEKLMVNSVEYNNS 240

Query: 385 --------LFGPVNL----------FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 426
                   L  PV L          FW T++DKAM  FL CL  F         +     
Sbjct: 241 TTNAPGDWLILPVELDLYFSGGLKFFWDTKFDKAMVAFLDCLSQFTREVEKIATQ----- 295

Query: 427 DKCFKLPYKIENDK-----VEN----YSITQSFNKQENWTKALKYTLCNLKWALFW 473
              F LPY++E++K     VEN    YSI   FN  E WTKALK+ L NLKW L W
Sbjct: 296 ---FLLPYQMESEKGKINDVENSGGSYSIKYQFNSDEQWTKALKFMLTNLKWLLAW 348

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>gnl|CDD|217933 pfam04156, IncA, IncA protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG2751447 consensus Beclin-like protein [Signal transduction 100.0
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 100.0
PF10186302 Atg14: UV radiation resistance protein and autopha 99.44
KOG2751447 consensus Beclin-like protein [Signal transduction 99.15
KOG2896377 consensus UV radiation resistance associated prote 98.63
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 97.53
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.89
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.84
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.13
PRK03918 880 chromosome segregation protein; Provisional 95.86
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 95.81
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.8
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.76
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.67
PRK11637428 AmiB activator; Provisional 95.63
PHA02562562 46 endonuclease subunit; Provisional 95.61
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 95.6
KOG0979 1072 consensus Structural maintenance of chromosome pro 95.56
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.41
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.37
PRK11637428 AmiB activator; Provisional 95.31
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 95.14
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 95.09
PRK09039343 hypothetical protein; Validated 94.77
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.57
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.56
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.54
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.36
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.36
KOG0994 1758 consensus Extracellular matrix glycoprotein Lamini 94.35
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.31
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 94.31
PRK03918 880 chromosome segregation protein; Provisional 94.29
PRK02224880 chromosome segregation protein; Provisional 94.2
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 94.2
PHA02562562 46 endonuclease subunit; Provisional 93.98
PF13851201 GAS: Growth-arrest specific micro-tubule binding 93.96
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 93.92
COG2433652 Uncharacterized conserved protein [Function unknow 93.9
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.87
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.83
PRK02224880 chromosome segregation protein; Provisional 93.8
PRK10884206 SH3 domain-containing protein; Provisional 93.76
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 93.74
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 93.7
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.67
COG4026290 Uncharacterized protein containing TOPRIM domain, 93.61
PRK04863 1486 mukB cell division protein MukB; Provisional 93.5
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.45
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.44
COG4372499 Uncharacterized protein conserved in bacteria with 93.38
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.22
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.21
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 93.2
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 93.15
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.99
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 92.78
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 92.76
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 92.74
PRK04778569 septation ring formation regulator EzrA; Provision 92.72
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 92.67
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 92.6
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 92.59
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 92.52
PF00038312 Filament: Intermediate filament protein; InterPro: 92.52
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 92.48
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 92.43
PRK04863 1486 mukB cell division protein MukB; Provisional 92.39
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 92.28
PRK10884206 SH3 domain-containing protein; Provisional 92.24
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 92.1
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.98
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 91.93
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.84
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 91.78
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.77
PRK04778569 septation ring formation regulator EzrA; Provision 91.57
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 91.42
KOG09331174 consensus Structural maintenance of chromosome pro 91.21
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 91.19
KOG4673 961 consensus Transcription factor TMF, TATA element m 91.19
COG4985289 ABC-type phosphate transport system, auxiliary com 91.1
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 91.04
PF00038312 Filament: Intermediate filament protein; InterPro: 90.94
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 90.89
KOG0964 1200 consensus Structural maintenance of chromosome pro 90.84
PRK01156 895 chromosome segregation protein; Provisional 90.76
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.66
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 90.65
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 90.63
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.6
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.53
PRK01156 895 chromosome segregation protein; Provisional 90.5
PRK09039343 hypothetical protein; Validated 90.46
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 90.46
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 90.43
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 90.32
TIGR006061311 rad50 rad50. This family is based on the phylogeno 90.28
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.2
COG2433652 Uncharacterized conserved protein [Function unknow 90.03
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 89.89
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 89.71
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 89.71
KOG1962216 consensus B-cell receptor-associated protein and r 89.54
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.53
COG4372499 Uncharacterized protein conserved in bacteria with 89.5
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.44
PF1528525 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 89.3
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 89.14
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 89.13
PF10186302 Atg14: UV radiation resistance protein and autopha 89.12
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 88.99
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 88.99
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 88.81
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 88.75
KOG2072988 consensus Translation initiation factor 3, subunit 88.72
KOG0288 459 consensus WD40 repeat protein TipD [General functi 88.7
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 88.54
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 88.27
TIGR02977219 phageshock_pspA phage shock protein A. Members of 88.17
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 88.06
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.92
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.74
KOG09331174 consensus Structural maintenance of chromosome pro 87.68
COG5185622 HEC1 Protein involved in chromosome segregation, i 87.56
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 87.55
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 87.52
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 87.42
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 87.28
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 87.26
KOG0971 1243 consensus Microtubule-associated protein dynactin 87.24
KOG0977546 consensus Nuclear envelope protein lamin, intermed 87.08
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 87.02
PRK00409782 recombination and DNA strand exchange inhibitor pr 87.0
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 86.55
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 86.55
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 86.52
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 86.49
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 86.48
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 86.18
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 86.15
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 86.15
PF05700221 BCAS2: Breast carcinoma amplified sequence 2 (BCAS 85.98
COG5185622 HEC1 Protein involved in chromosome segregation, i 85.82
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 85.63
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 85.4
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 85.39
PF05701522 WEMBL: Weak chloroplast movement under blue light; 85.1
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 85.08
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 85.03
PRK11519 719 tyrosine kinase; Provisional 84.91
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 84.79
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 84.79
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 84.74
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 84.66
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 84.55
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 84.11
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 84.02
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 83.99
TIGR02231 525 conserved hypothetical protein. This family consis 83.9
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 83.73
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 83.66
PF05149289 Flagellar_rod: Paraflagellar rod protein; InterPro 83.43
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 83.34
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 83.33
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 83.2
PRK12704520 phosphodiesterase; Provisional 82.98
TIGR02231525 conserved hypothetical protein. This family consis 82.95
KOG0996 1293 consensus Structural maintenance of chromosome pro 82.94
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 82.84
PF15254 861 CCDC14: Coiled-coil domain-containing protein 14 82.77
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 82.74
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 82.59
PRK10361475 DNA recombination protein RmuC; Provisional 82.56
PRK00409782 recombination and DNA strand exchange inhibitor pr 82.32
PF10234267 Cluap1: Clusterin-associated protein-1; InterPro: 82.28
PF13851201 GAS: Growth-arrest specific micro-tubule binding 82.22
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 82.14
KOG1937521 consensus Uncharacterized conserved protein [Funct 82.14
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 82.0
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 81.96
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 81.94
PRK00106535 hypothetical protein; Provisional 81.82
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 81.72
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 81.51
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 81.5
PRK08032462 fliD flagellar capping protein; Reviewed 81.47
PRK11281 1113 hypothetical protein; Provisional 81.34
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 81.29
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 81.27
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 81.2
PF1141484 Suppressor_APC: Adenomatous polyposis coli tumour 81.16
KOG0979 1072 consensus Structural maintenance of chromosome pro 81.15
PF15066527 CAGE1: Cancer-associated gene protein 1 family 80.94
PRK13169110 DNA replication intiation control protein YabA; Re 80.92
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 80.9
KOG2077 832 consensus JNK/SAPK-associated protein-1 [Signal tr 80.86
KOG4403575 consensus Cell surface glycoprotein STIM, contains 80.77
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 80.72
PF03961451 DUF342: Protein of unknown function (DUF342); Inte 80.49
PRK11519719 tyrosine kinase; Provisional 80.49
PF14662193 CCDC155: Coiled-coil region of CCDC155 80.49
PF05278269 PEARLI-4: Arabidopsis phospholipase-like protein ( 80.48
PF01920106 Prefoldin_2: Prefoldin subunit; InterPro: IPR00277 80.4
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 80.36
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 80.3
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 80.25
KOG3647338 consensus Predicted coiled-coil protein [General f 80.23
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 80.14
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-106  Score=831.45  Aligned_cols=432  Identities=52%  Similarity=0.854  Sum_probs=401.8

Q ss_pred             EeecccchhhccccccCCCCCCccccccccccccCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCCccceE
Q 010177           33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV  111 (516)
Q Consensus        33 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~d~s~vvl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S~v  111 (516)
                      ++|+|+|..+++..|.++--.+.+.|+..++.+..+|+.+++|+|.+.+ ++.+.|+++|++.. +++. ++.++.+|||
T Consensus         1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~   78 (447)
T KOG2751|consen    1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV   78 (447)
T ss_pred             CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence            5899999999999998888889999999999999999999999999965 89999999999887 4544 7999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 010177          112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD  191 (516)
Q Consensus       112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~i~~l~~lFdILSs~s~IDhPLC~eC~d~Lle~Ld~qle~~~~E  191 (516)
                      +.+...+..+....+-++...+.+++.+.+..++++++++++++|+|+|+|++||||+|.||++.|++.|+++++.+++|
T Consensus        79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e  158 (447)
T KOG2751|consen   79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE  158 (447)
T ss_pred             eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988776665555556666666667788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 010177          192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF  271 (516)
Q Consensus       192 ~d~Y~~fL~~L~~~~~~~~see~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~El~~le~e~~~L~~eE~~~W~e~N~~  271 (516)
                      +++|++|+++|+++..+ .+++++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+
T Consensus       159 ~~~Y~~~l~~Le~~~~~-~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~  237 (447)
T KOG2751|consen  159 VDTYKACLQRLEQQNQD-VSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF  237 (447)
T ss_pred             HHHHHHHHHHHhhcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987643 37889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 010177          272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT  351 (516)
Q Consensus       272 q~qL~~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~t  351 (516)
                      ++++.++++++++|++|+++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++
T Consensus       238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~  317 (447)
T KOG2751|consen  238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT  317 (447)
T ss_pred             HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCceeeeecCCCceEEecCC---ceeeccc--CCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 010177          352 MCQYFRPKFPYRIKIIPMGSYPRIMDSNN---NTYELFG--PVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP  426 (516)
Q Consensus       352 la~~l~~~f~~~YkLvPmGS~SkI~~~~~---~~~eLyg--~~~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~  426 (516)
                      |++++|++|. +|+||||||+|+|++...   ..+++|+  +.+|||++|||+||+|||+||+||+++++++++      
T Consensus       318 l~~kig~~~~-~y~lvp~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~------  390 (447)
T KOG2751|consen  318 LANKIGLNFV-RYRLVPMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDT------  390 (447)
T ss_pred             HHHhcCcccc-eeeeecccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCc------
Confidence            9999999998 999999999999987543   4567774  458999999999999999999999999998764      


Q ss_pred             CCCCCCceeeeCCcccee----eEEecCCCCchHhHHHHHHHHhHHHHHHHHhh
Q 010177          427 DKCFKLPYKIENDKVENY----SITQSFNKQENWTKALKYTLCNLKWALFWFVG  476 (516)
Q Consensus       427 ~~~~~LPY~I~kDkIgg~----SIkl~~n~~e~WTkAlK~lLtNlKwlLawv~~  476 (516)
                        .+.|||.|++|+|+|.    +|++.||++++||+||||||||+||++|||+.
T Consensus       391 --~~~lPy~ie~d~i~d~~~~y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss  442 (447)
T KOG2751|consen  391 --SFNLPYDIEKDKLNDPSSSYSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS  442 (447)
T ss_pred             --ccCCcchhhcccccCCccceeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence              5999999999999986    69999999999999999999999999999984

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF15254 CCDC14: Coiled-coil domain-containing protein 14 Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK08032 fliD flagellar capping protein; Reviewed Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 Back     alignment and domain information
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
4ddp_A210 Crystal Structure Of Beclin 1 Evolutionarily Conser 3e-42
3vp7_A220 Crystal Structure Of The Beta-Alpha Repeated, Autop 4e-15
>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved Domain(Ecd) Length = 210 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 22/207 (10%)
Query: 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEIN 339
           +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW+EIN
Sbjct: 5   DELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEIN 64
Query: 340 AAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNLFWST 395
           AAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  FW  
Sbjct: 65  AAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDN 123
Query: 396 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK--IENDKVEN-------YSI 446
           ++D AM  FL C++ F E     +          F LPY+  +E  K+E+       YSI
Sbjct: 124 KFDHAMVAFLDCVQQFKEEVEKGETR--------FCLPYRMDVEKGKIEDTGGSGGSYSI 175
Query: 447 TQSFNKQENWTKALKYTLCNLKWALFW 473
              FN +E WTKALK+ L NLKW L W
Sbjct: 176 KTQFNSEEQWTKALKFMLTNLKWGLAW 202
>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated, Autophagy-Specific (Bara) Domain Of Vps30ATG6 Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 3e-81
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 6e-73
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 2e-22
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 4e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 7e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 7e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 8e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 7e-04
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 6e-04
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Length = 210 Back     alignment and structure
 Score =  251 bits (641), Expect = 3e-81
 Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 22/211 (10%)

Query: 276 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 335
           +   +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW
Sbjct: 1   LELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEW 60

Query: 336 DEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNL 391
           +EINAAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  
Sbjct: 61  NEINAAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRF 119

Query: 392 FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDK---------VE 442
           FW  ++D AM  FL C++ F E             +  F LPY+++ +K           
Sbjct: 120 FWDNKFDHAMVAFLDCVQQFKEEVEKG--------ETRFCLPYRMDVEKGKIEDTGGSGG 171

Query: 443 NYSITQSFNKQENWTKALKYTLCNLKWALFW 473
           +YSI   FN +E WTKALK+ L NLKW L W
Sbjct: 172 SYSIKTQFNSEEQWTKALKFMLTNLKWGLAW 202
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Length = 220 Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 100.0
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 100.0
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 99.72
2p1l_B31 Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2 98.32
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.5
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.39
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.11
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 96.01
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 95.8
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.64
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.37
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.33
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 95.2
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.19
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.49
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.27
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.14
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.11
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 93.65
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.39
2v4h_A110 NF-kappa-B essential modulator; transcription, met 90.56
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 90.45
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 90.44
3bas_A89 Myosin heavy chain, striated muscle/general contro 90.16
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 90.01
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 89.65
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 89.39
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 88.44
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 87.58
3bas_A89 Myosin heavy chain, striated muscle/general contro 87.07
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 86.18
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.58
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 85.49
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 85.25
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 84.73
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 84.72
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 84.5
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 84.36
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 84.16
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 83.76
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 83.54
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 82.79
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 82.29
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 81.9
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 81.76
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 81.66
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 81.11
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 80.82
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 80.71
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.7e-79  Score=585.92  Aligned_cols=192  Identities=44%  Similarity=0.900  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 010177          277 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF  356 (516)
Q Consensus       277 ~~~ee~~sl~~q~~~a~~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l  356 (516)
                      ++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus         2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l   81 (210)
T 4ddp_A            2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM   81 (210)
T ss_dssp             ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeecCCCceEEecCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 010177          357 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL  432 (516)
Q Consensus       357 ~~~f~~~YkLvPmGS~SkI~~~~~--~~~eLyg~~--~lf~~~kFD~AM~afL~cl~q~~e~~~~~d~~~~~~~~~~~~L  432 (516)
                      +++|+ +|+|+||||+|+|++..+  .+|+||+++  ++|++++||+||+|||+||+||++++++.+        ++++|
T Consensus        82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l  152 (210)
T 4ddp_A           82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL  152 (210)
T ss_dssp             TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred             CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence            99999 999999999999998653  589999754  789999999999999999999999998654        36999


Q ss_pred             ceee--eCCccc-------eeeEEecCCCCchHhHHHHHHHHhHHHHHHHHhhC
Q 010177          433 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN  477 (516)
Q Consensus       433 PY~I--~kDkIg-------g~SIkl~~n~~e~WTkAlK~lLtNlKwlLawv~~~  477 (516)
                      ||+|  ++|||+       |+|||+++|++|+||+|||||||||||+|||++..
T Consensus       153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~  206 (210)
T 4ddp_A          153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ  206 (210)
T ss_dssp             SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999  799997       79999999999999999999999999999999853
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d2ooca1104 a.24.10.6 (A:8-111) Histidine phosphotransferase S 0.003
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 156 FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF 215
           F         +  +  E + +  ++       +      ++  +  ++G AR V   A  
Sbjct: 5   FAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGV--GAFN 62

Query: 216 LKEKLK-IEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256
           L E  +  E  +  LE      +    ++ A   E  L+S +
Sbjct: 63  LGEVCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRSLK 104

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00