Citrus Sinensis ID: 010182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
Protein Sequence
MDPNPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHccccccccccccccccHHHHHHcHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHccccccEEcccccccccccHHHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEccccccccccHHHHHccHHHHHHHHHHcccccccHHHHccccEEEccccccccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHccccHccccHHHcccccccEEcccccHHHHccHHHHHHHHccccccccHHHHcHHHHHHHEcccccccccccHHHHHHHHHHHHHHccccccccccHHHHcccccccHHHHccccHccEEEcccccccccccHHHcccccEEEccccccccccHHHHcHHcccEEEccccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccHccccccEEEccccccccccHHHccccccEEEEccccccccccccHHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccHHHHHHHccccccccHHHHHccHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccHHccc
Coil and Loop (DISEMBL)
mdpnpktfpILSFVMqrlptfgprtaaeydveqpdpsssgqaqsqknpvivdqmphlsdpkLVSAMRRAIHDVYQTRSvlqtlgprpdhetidkTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERaengeeevppvreEVNEEVMGLLQEAAGksleqvdlssrglrflpEAFGRIAGLRLMSLSnnhlevipdsiaGLVNLEELNLASNLLEtlpdsiglldnlkildvsgnklsalpdsisHCRSLVELDASFnrlaylptniGHELVNLQKllvplnkirflptsigemASLRHLDAHFNelhglpatigkltNLEILnvssnftdmkelpetfgeltnlkeldlsnnqihalpntFGRLDKLIKLnleenpmvippveVVKEGVGAVKTFMAKRWLDILLEEERRSMLKlegnnnegeqmptgwltrSTSWLKTVGenvsgilgggnsprdpcldqql
Flexible Loop (DISEMBL)
MDPNPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQtrsvlqtlgprpdhetidkTKARIVEIDSELAKSLEGIVHSiretdvdqfeWRVQLADKEkalredsakeknackkilelDDMHEAYEKMLKEAEERLVKIYEraengeeevppvrEEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLegnnnegeqmptgWLTRSTSWLKTVGENvsgilgggnsprdpcldqql
Low Complexity Region (SEG)
MDPNPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAengeeevppvreevneevMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGlvnleelnlasnlletlPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMvippvevvkegvgavkTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL
Disordered region (IsUnstruct)
********PILSFVMQRLPT********************************************AMRRAIHDVYQTRSVLQTL***********TKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLA*******************IL*************************************************************LSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLE*********************GWLTRSTSWLKTVGENVSGIL***************
Disordered Region (DISOPRED)
***NPKTFPILSFVMQRLP**********************************MPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSE****L*****SIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDIL***ERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN*********S**DPCLDQQ*
Disordered Region (DISEMBL)
MDPNPKTFPILSFVMQRLPTFGPRTAAE******************NPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAE*********REEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL
Disordered Region (DISPRO)
****PKTFPILSFVMQRLPT*****************SSGQAQSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPNPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	516	2.2.26 [Sep-21-2011]
O61967	699	Protein lap1 OS=Caenorhab	yes	no	0.441	0.326	0.389	7e-32
Q96NW7	1537	Leucine-rich repeat-conta	yes	no	0.441	0.148	0.358	2e-29
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.441	0.161	0.346	3e-29
Q80TE7	1490	Leucine-rich repeat-conta	yes	no	0.420	0.145	0.362	7e-29
F1MCA7	1536	Leucine-rich repeat-conta	yes	no	0.441	0.148	0.347	8e-29
P70587	1490	Leucine-rich repeat-conta	yes	no	0.420	0.145	0.362	9e-29
Q80TH2	1402	Protein LAP2 OS=Mus muscu	no	no	0.441	0.162	0.338	2e-28
Q5F4C4	529	Leucine-rich repeat prote	no	no	0.567	0.553	0.304	6e-28
Q9BTT6	524	Leucine-rich repeat-conta	no	no	0.453	0.446	0.347	9e-28
Q9Y4C4	1052	Malignant fibrous histioc	no	no	0.558	0.273	0.305	1e-27

>sp|O61967|LAP1_CAEEL Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3

 Score =  139 bits (349), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 3/231 (1%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
           S+  + L+   L  LP   G +  LR++   +N L  IP SI  L  LEEL+L  N LE 
Sbjct: 129 SITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEA 188

Query: 269 LPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
           LP  IG L +L+   V  N L++LPDSIS CR L +LD S N++  LP N+G  + NL  
Sbjct: 189 LPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLG-RMPNLTD 247

Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
           L + +N+I  LP+S GE+  L+ L A  N LH L + IGK  +L  L +  NF  + +LP
Sbjct: 248 LNISINEIIELPSSFGELKRLQMLKADRNSLHNLTSEIGKCQSLTELYLGQNF--LTDLP 305

Query: 389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK 439
           +T G+L  L  L++  N +  +P+T G    L  L+L +N +   P+ + K
Sbjct: 306 DTIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGK 356

Critical role in assembling adherens junctions; adapter protein involved in polarizing protein trafficking in epithelial cells. Necessary to maintain, not establish, the entire terminal web (organelle-depleted, intermediate filament-rich layer of cytoplasm that underlies the apical microvilli of polarized epithelial cells) or brush border assembly at the apical surface gut cells. Required for correct localization of ifb-2 intermediate filaments in the terminal web.
Caenorhabditis elegans (taxid: 6239)

>sp|Q96NW7|LRRC7_HUMAN Leucine-rich repeat-containing protein 7 OS=Homo sapiens GN=LRRC7 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 127/254 (50%), Gaps = 26/254 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLA------ 262
           +L Q+ L+   L FLP  FGR+  LR++ L  NHL+ +P S+  L  LE L+L       
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFGE 198

Query: 263 -----------------SNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305
                            +N L+ LP SIG L  L  LD+S N++  +   IS C +L +L
Sbjct: 199 LPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDL 258

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
             S N L  LP +IG  L  L  L V  N++  LP +IG ++ L   D   NEL  LP+T
Sbjct: 259 LLSSNMLQQLPDSIGL-LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPST 317

Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           IG L +L  L V  NF  + ELP   G   N+  + L +N++  LP   G++ KL  LNL
Sbjct: 318 IGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNL 375

Query: 426 EENPMVIPPVEVVK 439
            +N +   P    K
Sbjct: 376 SDNRLKNLPFSFTK 389

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Homo sapiens (taxid: 9606)

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/254 (34%), Positives = 130/254 (51%), Gaps = 26/254 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN---- 264
           +L Q+ L+   L FLP  FGR+  L+++ L  N L+++P ++  L  LE L+L SN    
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTE 198

Query: 265 ---LLETL----------------PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305
              +LE L                P  IG L  L  LDVS N +  + + IS C +L +L
Sbjct: 199 VPEVLEQLSGLKEFWMDANRLTFIPGFIGSLKQLTYLDVSKNNIEMVEEGISTCENLQDL 258

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
             S N L  LP  IG  L N+  L +  N++ +LP SIG + S+  LD  FNE+  LP++
Sbjct: 259 LLSSNSLQQLPETIG-SLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNEVEALPSS 317

Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           IG+LTNL       N+  +++LP   G   N+  L L +N++  LP   G + KL  +NL
Sbjct: 318 IGQLTNLRTFAADHNY--LQQLPPEIGSWKNITVLFLHSNKLETLPEEMGDMQKLKVINL 375

Query: 426 EENPMVIPPVEVVK 439
            +N +   P    K
Sbjct: 376 SDNRLKNLPFSFTK 389

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

>sp|Q80TE7|LRRC7_MOUSE Leucine-rich repeat-containing protein 7 OS=Mus musculus GN=Lrrc7 PE=1 SV=2

 Score =  129 bits (323), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 26/243 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLA------ 262
           +L Q+ L+   L FLP  FGR+  LR++ L  NHL+ +P S+  L  LE L+L       
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSE 198

Query: 263 -----------------SNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305
                            +N L+ LP SIG L  L  LD+S N++  +   IS C +L +L
Sbjct: 199 LPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDL 258

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
             S N L  LP +IG  L  L  L V  N++  LP +IG ++ L   D   NEL  LP T
Sbjct: 259 LLSSNMLQQLPDSIGL-LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPT 317

Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           IG L +L  L V  NF  + ELP   G   N+  + L +N++  LP   G++ +L  LNL
Sbjct: 318 IGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNL 375

Query: 426 EEN 428
            +N
Sbjct: 376 SDN 378

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Mus musculus (taxid: 10090)

>sp|F1MCA7|LRRC7_BOVIN Leucine-rich repeat-containing protein 7 OS=Bos taurus GN=LRRC7 PE=3 SV=3

 Score =  129 bits (323), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 127/253 (50%), Gaps = 25/253 (9%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
           +L Q+ L+   L FLP  FGR+A LR++ L  NHL+ +P S+  L  LE L+L +N    
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLAKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSE 198

Query: 269 LPDSIGLLDNLK----------------------ILDVSGNKLSALPDSISHCRSLVELD 306
           LP+ +  + NL+                       LD+S N++  +   IS C +L +L 
Sbjct: 199 LPEVLDQIQNLRELWMDNNALQVLPGVWKLKMLVYLDMSKNRIETVDMDISGCEALEDLL 258

Query: 307 ASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI 366
            S N L  LP +IG  L  L  L V  N++  LP +IG ++ L   D   NEL  LP+TI
Sbjct: 259 LSSNMLQQLPDSIGL-LKKLTTLKVDDNQLTILPNTIGNLSLLEEFDCSCNELESLPSTI 317

Query: 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426
           G L +L  L V  NF  + ELP   G   N+  + L +N++  LP   G++ KL  LNL 
Sbjct: 318 GYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLS 375

Query: 427 ENPMVIPPVEVVK 439
           +N +   P    K
Sbjct: 376 DNRLKNLPFSFTK 388

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Bos taurus (taxid: 9913)

>sp|P70587|LRRC7_RAT Leucine-rich repeat-containing protein 7 OS=Rattus norvegicus GN=Lrrc7 PE=1 SV=2

 Score =  128 bits (322), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/243 (36%), Positives = 123/243 (50%), Gaps = 26/243 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLA------ 262
           +L Q+ L+   L FLP  FGR+  LR++ L  NHL+ +P S+  L  LE L+L       
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSE 198

Query: 263 -----------------SNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305
                            +N L+ LP SIG L  L  LD+S N++  +   IS C +L +L
Sbjct: 199 LPEVLDQIQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDL 258

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
             S N L  LP +IG  L  L  L V  N++  LP +IG ++ L   D   NEL  LP T
Sbjct: 259 LLSSNMLQQLPDSIGL-LKKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPT 317

Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           IG L +L  L V  NF  + ELP   G   N+  + L +N++  LP   G++ +L  LNL
Sbjct: 318 IGYLHSLRTLAVDENF--LPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQRLRVLNL 375

Query: 426 EEN 428
            +N
Sbjct: 376 SDN 378

Required for normal synaptic spine architecture and function. Necessary for DISC1 and GRM5 localization to postsynaptic density complexes and for both N-methyl D-aspartate receptor-dependent and metabotropic glutamate receptor-dependent long term depression.

Rattus norvegicus (taxid: 10116)

>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 26/254 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN---- 264
           +L Q+ L+   L FLP  FGR+  L+++ L  N L+++P ++  L  LE L+L SN    
Sbjct: 139 NLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTE 198

Query: 265 ---LLETL----------------PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305
              +LE L                P  IG L  L  LDVS N +  + + IS C +L + 
Sbjct: 199 VPEVLEQLSGLREFWMDGNRLTFIPGFIGSLRQLTYLDVSKNNIEMVEEGISTCENLQDF 258

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
             S N L  LP  IG  L N+  L +  N++ +LP SIG + S+  LD  FNE+  LP++
Sbjct: 259 LLSSNSLQQLPETIG-SLKNVTTLKIDENQLMYLPDSIGGLRSIEELDCSFNEIEALPSS 317

Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           IG+LTN+       N+  +++LP   G   N+  L L  N++  LP   G + KL  +NL
Sbjct: 318 IGQLTNMRTFAADHNY--LQQLPPEIGNWKNITVLFLHCNKLETLPEEMGDMQKLKVINL 375

Query: 426 EENPMVIPPVEVVK 439
            +N +   P    K
Sbjct: 376 SDNRLKNLPFSFTK 389

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state.

Mus musculus (taxid: 10090)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 151/299 (50%), Gaps = 6/299 (2%)

Query: 191 REEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI 250
           ++  N EV+  L +   ++  ++DL+ R +  LP A   +  L  + L +N L+ +P  +
Sbjct: 83  KKSSNAEVIKELNKCREENSMRLDLAKRSIHMLPSAVKELTQLTELYLYSNKLQSLPAEV 142

Query: 251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFN 310
             LVNL  L L+ N L +LPDS+  L  L++LD+  NKL  +P  +    SL  L   FN
Sbjct: 143 GCLVNLVTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLTSLATLYLRFN 202

Query: 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLT 370
           R+  +  +I   L  L  L +  NKI+ LP  IGE+ +L  LD   N+L  LP  IG  T
Sbjct: 203 RITTVEKDI-KTLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEIGSCT 261

Query: 371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
             +I N+     ++ +LPET G L++L  L L  N++ A+P +  +  +L +LNLE N +
Sbjct: 262 --QITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSELDELNLENNNI 319

Query: 431 VIPPVEVVKEGVGAVKTFMAKRWLD---ILLEEERRSMLKLEGNNNEGEQMPTGWLTRS 486
              P  ++   V      +A+       +    +  ++  L   +N   ++P G  +R+
Sbjct: 320 STLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRA 378

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score =  125 bits (313), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 134/242 (55%), Gaps = 8/242 (3%)

Query: 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
            +SLE++ L +  LR LPE F ++  LR + LS+N ++ +P  IA  + L EL+++ N +
Sbjct: 35  ARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNEI 94

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
             +P+SI     L++ D SGN L+ LP+S    ++L  L  +   L  LP NIG+ L NL
Sbjct: 95  PEIPESISFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGN-LYNL 153

Query: 327 QKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
             L +  N + +LP S+ ++  L  LD   NE++ LP +IG L +L+ L +  N   + E
Sbjct: 154 ASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGN--QLSE 211

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK 446
           LP+  G L NL  LD+S N++  LP     L  L  L + +N +     E + +G+G +K
Sbjct: 212 LPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLL-----ETIPDGIGKLK 266

Query: 447 TF 448
             
Sbjct: 267 KL 268

Homo sapiens (taxid: 9606)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 157/344 (45%), Gaps = 56/344 (16%)

Query: 207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNL 265
           G  L ++D+S   L  L  E    +  LR ++LS+N L  +P  +  L +LEEL+++ N 
Sbjct: 110 GHHLTELDVSHNRLTALGAEVVSALRELRKLNLSHNQLPALPAQLGALAHLEELDVSFNR 169

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
           L  LPDS+  L  L+ LDV  N+L+A P  +    +L ELD S NRL  LP +I   L  
Sbjct: 170 LAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVALEELDVSSNRLRGLPEDIS-ALRA 228

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD-- 383
           L+ L +   ++  LP    E+ASL  L    N L  LPA    L  L++LN+SSN  +  
Sbjct: 229 LKILWLSGAELGTLPAGFCELASLESLMLDNNGLQALPAQFSCLQRLKMLNLSSNLFEEF 288

Query: 384 ------------------------------------------MKELPETFGELTNLKELD 401
                                                     ++ LP++  ELT L+EL 
Sbjct: 289 PAALLPLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDNNRIRYLPDSIVELTGLEELV 348

Query: 402 LSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEE 461
           L  NQI  LP+ FG+L ++    +++NP++ PP EV  +G+  +  +  K         +
Sbjct: 349 LQGNQIAVLPDHFGQLSRVGLWKIKDNPLIQPPYEVCMKGIPYIAAYQ-KELAHSQPAVQ 407

Query: 462 RRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGN 505
            R  L L G+   G+ +    LT          E V G  GGG+
Sbjct: 408 PRLKLLLMGHKAAGKTLLRHCLTE---------ERVEGCPGGGD 442

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
255540519	519	leucine-rich repeat-containing protein,	0.988	0.982	0.645	0.0
449440622	523	PREDICTED: leucine-rich repeat-containin	0.988	0.975	0.622	0.0
225456898	517	PREDICTED: leucine-rich repeat protein S	0.982	0.980	0.655	1e-174
356508718	513	PREDICTED: leucine-rich repeat protein S	0.976	0.982	0.603	1e-172
224133674	515	predicted protein [Populus trichocarpa]	0.972	0.974	0.616	1e-171
357461813	510	Leucine-rich-repeat protein [Medicago tr	0.961	0.972	0.570	1e-163
356513766	511	PREDICTED: uncharacterized protein LOC10	0.972	0.982	0.571	1e-162
297810689	506	leucine-rich repeat family protein [Arab	0.965	0.984	0.573	1e-151
22330985	499	ras group-related LRR 9 protein [Arabido	0.945	0.977	0.569	1e-151
15239256	506	plant intracellular ras group-related LR	0.965	0.984	0.567	1e-150

>gi|255540519|ref|XP_002511324.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223550439|gb|EEF51926.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/525 (64%), Positives = 423/525 (80%), Gaps = 15/525 (2%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTAAE---YDVEQPDPSSSGQAQSQKNPVIVDQMPHL 57
           M+PNPK+FPILS+VM RLP+FGP++++    +D+EQP P  +    S     I  Q+PHL
Sbjct: 1   MEPNPKSFPILSYVMARLPSFGPKSSSSETSFDIEQPPPPRAPSDPSASQTPITSQLPHL 60

Query: 58  SDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSI 117
           +DPKL+++M RAI DV QTRSVLQTLGPRPDHET+D  + ++ EI+S+L+K LE IV S 
Sbjct: 61  TDPKLLASMTRAISDVSQTRSVLQTLGPRPDHETVDNARIKLAEIESDLSKQLEEIVLSP 120

Query: 118 RETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIY 177
           R  +V++ EWR  LADKE+  R+ + KEKN CK +L+LD+MH  Y++MLK+AE+RLV+IY
Sbjct: 121 RPAEVERLEWRSHLADKEQECRKSAEKEKNLCKMVLQLDEMHAEYDRMLKDAEKRLVQIY 180

Query: 178 ERAENGEEE-VPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLM 236
           ERAE GE+E      EEVNEEV+G+++EA+G+ LE+VDLS+R LRFLPEAF RI+GL+++
Sbjct: 181 ERAERGEDEDNHKDNEEVNEEVVGIMKEASGRVLERVDLSNRRLRFLPEAFCRISGLKVL 240

Query: 237 SLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI 296
            LSNN LEVIPDSIAGL NL+ELNLASNLLE LPD IGLL NLK+L+VS NKL +LPDSI
Sbjct: 241 DLSNNQLEVIPDSIAGLENLDELNLASNLLEALPDFIGLLVNLKVLNVSSNKLESLPDSI 300

Query: 297 SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHF 356
           SHCRSL+ELD SFNRL YLPTNIG+ELVN+++L + LNKIR LPTSIGEM SL+HLDAHF
Sbjct: 301 SHCRSLLELDVSFNRLTYLPTNIGYELVNVKRLSIQLNKIRSLPTSIGEMRSLQHLDAHF 360

Query: 357 NELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
           NEL GLP + G+L NLEIL +SSNF+D+KELP+T G+LTNLKELDLSNNQI  LP++FGR
Sbjct: 361 NELQGLPLSFGRLINLEILKLSSNFSDLKELPDTLGDLTNLKELDLSNNQIETLPDSFGR 420

Query: 417 LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE 476
           LD L KLNL++NP+++PP EVVKEGV AVK FMAKRWLDIL+EEER+SM++++      E
Sbjct: 421 LDNLTKLNLDQNPLILPPPEVVKEGVEAVKIFMAKRWLDILVEEERKSMVEVQ------E 474

Query: 477 QMPTGWLTRSTSWLKT----VGENVSGILG-GGNSPRDPCLDQQL 516
           Q  +GWLTRSTSWLK+    V ENVS  L     SPRD  L+QQL
Sbjct: 475 QAQSGWLTRSTSWLKSYAANVTENVSEYLSPRSRSPRDSYLNQQL 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440622|ref|XP_004138083.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449526497|ref|XP_004170250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/527 (62%), Positives = 405/527 (76%), Gaps = 17/527 (3%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTA-AEYDVEQPDPSSSGQAQ---SQKNPVIVDQMPH 56
           MDPNPK+FPILS+VM R+P+  PR    E+D+EQP   SSG  +   S  +  IV +MPH
Sbjct: 3   MDPNPKSFPILSYVMARIPSLSPRPPPTEFDIEQPASPSSGHGRFDPSSSSSRIVHEMPH 62

Query: 57  LSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHS 116
           LSDPK++++M  AI DV QTRSVL+TLG RPDHE +D  KAR+V+I+  L+  L+ IV S
Sbjct: 63  LSDPKVLASMTTAISDVAQTRSVLKTLGERPDHEAVDTAKARLVDIEVNLSAKLQEIVLS 122

Query: 117 IRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKI 176
            R  DV+  EWR  LA+KE   R+ + KEK   K I++LD+MHEAYE+MLKEAEERLVKI
Sbjct: 123 SRPADVELLEWRAHLAEKENECRQAADKEKQVYKAIVQLDEMHEAYERMLKEAEERLVKI 182

Query: 177 YERAENG---EEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGL 233
           YE AE G   EE++ PV EEVNEEV  +LQ+A  K ++++ L+ R LRFLPE FG I GL
Sbjct: 183 YESAERGLPEEEQLDPVSEEVNEEVAKILQDANEKEMDRISLTGRRLRFLPEEFGHIRGL 242

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP 293
            ++ +S+N L++IPDSI+GL NLEELN +SNLLE+LPDSIGLL  LK+L+VS NKL ALP
Sbjct: 243 VVLDISSNQLQIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNVSANKLHALP 302

Query: 294 DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD 353
           D+I HCRSLVELD SFN L YLPTNIG ELVNL+KL V LNK+R LP+S+  M+SLR+LD
Sbjct: 303 DTICHCRSLVELDVSFNSLTYLPTNIGLELVNLEKLAVQLNKLRSLPSSVCGMSSLRYLD 362

Query: 354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
           AHFNELHGLP  IGKLT LE LN+SSNFTD+ ELP TFG+L +L+ELDLSNNQIHALP+T
Sbjct: 363 AHFNELHGLPQAIGKLTKLEYLNLSSNFTDLTELPHTFGDLISLRELDLSNNQIHALPDT 422

Query: 414 FGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNN 473
           FG L+ L KLN+E+NP+ +PP+EVV +G  AV+TFM+KRWL+IL EE+R+  L+++    
Sbjct: 423 FGHLENLKKLNVEQNPLTVPPMEVVSKGPDAVRTFMSKRWLEILQEEDRKRTLEMD---- 478

Query: 474 EGEQMPTGWLTRSTSWLKT----VGENVSGILGGGNSPRDPCLDQQL 516
             EQ  TGWLTRSTSWLKT    V E VSGI+G   SPRDP LDQQL
Sbjct: 479 --EQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPKSPRDPYLDQQL 523

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456898|ref|XP_002280677.1| PREDICTED: leucine-rich repeat protein SHOC-2-like [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 345/526 (65%), Positives = 411/526 (78%), Gaps = 19/526 (3%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTAA----EYDVEQPDPSSSGQAQSQKNPVIVDQMPH 56
           MDPNPKTFP+LS+VM RLP  G +  A    + D+E  D  +S  A       +VDQMPH
Sbjct: 1   MDPNPKTFPVLSYVMSRLPKLGSKPPASDSSQIDIESGDVGASTSATGGSGE-LVDQMPH 59

Query: 57  LSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHS 116
           LS PK++++M  AI DV QTRSVLQTLG RPDHE +DK KA+IVEIDS L+K LE IV S
Sbjct: 60  LSHPKILASMTLAISDVAQTRSVLQTLGERPDHEAVDKAKAKIVEIDSRLSKQLEEIVLS 119

Query: 117 IRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKI 176
            R + +++ ++R   A+KE+  R+ + KEK   K +++LD+MHEAYEK+LKEAEERLVK+
Sbjct: 120 PRPSSIERLQFRAHQAEKEQECRQAAEKEKQIYKAVVQLDEMHEAYEKLLKEAEERLVKL 179

Query: 177 YERAENGEEEVP--PVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLR 234
           YE A    ++V   PV+EE NEEV+G+LQEA+GK LE+VDLS R LRFLPEAFG+I  L 
Sbjct: 180 YESASAFADDVEHLPVKEETNEEVVGVLQEASGKGLERVDLSGRRLRFLPEAFGKIRSLV 239

Query: 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294
            ++LS N LE IPDSIA L NLEELNL+SNLLE LPDSIGLL NLKILD SGNKL ALPD
Sbjct: 240 ALNLSCNQLEFIPDSIATLENLEELNLSSNLLELLPDSIGLLVNLKILDASGNKLLALPD 299

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
           SI HCRSLVELD SFN LAYLPTNIG+ELVNL++L + LNKIR LPTSIGEM SL HLDA
Sbjct: 300 SICHCRSLVELDVSFNNLAYLPTNIGYELVNLKRLSINLNKIRSLPTSIGEMRSLCHLDA 359

Query: 355 HFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTF 414
           HFNEL GLP+ IG+LTNLE LN+SSNF+D+ ELPET G+LTNL+ELDLSNNQI ALP+TF
Sbjct: 360 HFNELRGLPSAIGRLTNLETLNLSSNFSDLTELPETIGDLTNLRELDLSNNQIQALPDTF 419

Query: 415 GRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNE 474
           GRLD L KLNL++NP+VIPP+EVV EGV AVK FMAKRWLDIL+EEE++S+L+++     
Sbjct: 420 GRLDNLNKLNLDQNPLVIPPMEVVNEGVEAVKVFMAKRWLDILVEEEQKSLLEVK----- 474

Query: 475 GEQMPTGWLTRSTSWL----KTVGENVSGILGGGNSPRDPCLDQQL 516
            EQ  TGWLTRSTSWL      V ++VSG LG G  PRDP LDQQL
Sbjct: 475 -EQTETGWLTRSTSWLGSVVSGVSQSVSGYLGPG--PRDPYLDQQL 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508718|ref|XP_003523101.1| PREDICTED: leucine-rich repeat protein SHOC-2-like [Glycine max]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 317/525 (60%), Positives = 399/525 (76%), Gaps = 21/525 (4%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDP 60
           MDPNP TFP+LS++M RLP+  PR AA      P PS S Q   ++ P IV QMPHL+DP
Sbjct: 1   MDPNPGTFPLLSYIMSRLPSLTPRPAA------PAPSDSDQFDIEQPPEIVGQMPHLADP 54

Query: 61  KLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRET 120
           +LV++M RA+  V Q RSVL  +G RP HE +D  +A++ +++++L++ LE IV   R  
Sbjct: 55  ELVASMGRAVAQVTQARSVLTLIGERPTHEEVDNARAKLADVEAQLSRELEEIVLQARPA 114

Query: 121 DVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERA 180
           +++   WR Q A++E+  RE +  E+   + +L+LD+MHEAYEK+LK+AE+RLVK+YE  
Sbjct: 115 EIEIQGWRAQQAERERECRERAETERRVWRSVLQLDEMHEAYEKLLKDAEKRLVKMYESK 174

Query: 181 ENGE--EEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSL 238
           E+G   +      EEVNEEV+G+LQEA GK +E++DLS R L+ LPEAFGRI+GL +  L
Sbjct: 175 EDGGGGDADLAYGEEVNEEVVGILQEAYGKGMERIDLSGRQLKLLPEAFGRISGLLVFDL 234

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH 298
           S N L  IPDSIAGL NLEELNL+SNLLE+LPDSIGLL  LK+L+VSGNKL+ALPDSI  
Sbjct: 235 STNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDSICQ 294

Query: 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE 358
           CRSLVELD SFN L+YLPTNIG+EL NLQKL++ LNKIR  P+SI E+ SL +LDAHFNE
Sbjct: 295 CRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIYLNKIRSFPSSICELKSLHYLDAHFNE 354

Query: 359 LHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLD 418
           LHGLP  IG+LTNLE+LN+SSNF+D+KELPETFG+L NL+ELDLSNNQIHALP+TFGRLD
Sbjct: 355 LHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLANLRELDLSNNQIHALPDTFGRLD 414

Query: 419 KLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQM 478
            LIKLNLE+NP+ +PP+E+V +G+ A+KTFMAKRWLDILLEEER+S  +++    E EQ 
Sbjct: 415 NLIKLNLEQNPLELPPMEIVNQGLEAIKTFMAKRWLDILLEEERKSNQEMQ----EPEQ- 469

Query: 479 PTGWLTRSTSWLKTVGENVSGILG-------GGNSPRDPCLDQQL 516
             GWLTRST WLK V  NV G +G          SPRD  LDQQL
Sbjct: 470 -GGWLTRSTFWLKNVSGNVIGYIGTTVGSPMSPKSPRDAYLDQQL 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133674|ref|XP_002321633.1| predicted protein [Populus trichocarpa] gi|222868629|gb|EEF05760.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 326/529 (61%), Positives = 392/529 (74%), Gaps = 27/529 (5%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTAA-EYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSD 59
           MDP+PKT PILS+VM RLP+ G ++    +D+EQ              P      P LSD
Sbjct: 1   MDPDPKTHPILSYVMARLPSLGHKSPGPSFDIEQ--------PPQPSQPPPQSLFPQLSD 52

Query: 60  PKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRE 119
           P L+S+MRRA+ DV QTRSVL TLGPRPDHET+D  K ++ EI+S L+K LE +V S R 
Sbjct: 53  PALLSSMRRAVGDVAQTRSVLHTLGPRPDHETVDTAKLKLSEIESNLSKQLEDLVLSPRP 112

Query: 120 TDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYER 179
            ++D+ EWR  LA+KEK +RE++ KE    K +L+LD+MH+ YEK+LKEAE++LVKIY  
Sbjct: 113 CEIDRLEWRAHLAEKEKKIREEAEKEIGFYKMVLQLDEMHKDYEKLLKEAEDKLVKIYRM 172

Query: 180 AENGEEEVPPVREEVNEEVMGL---------LQEAAGKSLEQVDLSSRGLRFLPEAFGRI 230
           AE G EE   V     EE + +         L+E + K +E+VDLS+R LRFLPE FGR+
Sbjct: 173 AERGVEEDKEVEGVEVEEEVEVEVTEEVVGVLREGSSKGIERVDLSNRRLRFLPEGFGRV 232

Query: 231 AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290
            GL++++LSNN L+VIPDSI GL  LEELNLASNLLE LPDSIGLL NLKILDVS NK+ 
Sbjct: 233 VGLKVLNLSNNQLQVIPDSITGLEILEELNLASNLLEALPDSIGLLQNLKILDVSSNKIE 292

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLR 350
            LP +I HCRSL+ELD SFN L YLPTNIGHE+ NLQ+L + LNKI  LPTSIGEM SLR
Sbjct: 293 VLPGTICHCRSLLELDVSFNCLTYLPTNIGHEMSNLQRLSIQLNKIFSLPTSIGEMRSLR 352

Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL 410
           HLDAHFNEL GLP  IGKLTNLEILN+S NF+D+KELPETFG+LTNLKELDLSNNQI AL
Sbjct: 353 HLDAHFNELRGLPLAIGKLTNLEILNLSGNFSDLKELPETFGDLTNLKELDLSNNQISAL 412

Query: 411 PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEG 470
           P++FGRLD L KLNL++NP+VIPP EV+KEGV AVK FMAKRW+DIL+EEER+S L+++ 
Sbjct: 413 PDSFGRLDNLTKLNLDQNPLVIPPPEVIKEGVEAVKIFMAKRWIDILVEEERKSTLEVQ- 471

Query: 471 NNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNS---PRDPCLDQQL 516
                EQ  TGWLT STSWLKT    VS  + G  S   PRDP LDQQL
Sbjct: 472 -----EQAQTGWLTLSTSWLKTYATGVSATVSGFLSPRVPRDPYLDQQL 515

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461813|ref|XP_003601188.1| Leucine-rich-repeat protein [Medicago truncatula] gi|355490236|gb|AES71439.1| Leucine-rich-repeat protein [Medicago truncatula]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 300/526 (57%), Positives = 380/526 (72%), Gaps = 30/526 (5%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRTAAE------YDVEQPDPSSSGQAQSQKNPVIVDQM 54
           MDPNP TFPILS+VM RLP+   +  A       YD+EQP               IVDQM
Sbjct: 1   MDPNPGTFPILSYVMSRLPSLTTKPTATTSDTELYDIEQPR--------------IVDQM 46

Query: 55  PHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIV 114
           P+L+DP+L++AM  AI DV Q R++L+ +G RP HE +D  K ++ +I++EL++ LEGIV
Sbjct: 47  PNLADPELIAAMAGAIDDVQQARAILKLIGERPTHEEVDHAKTKLTDIEAELSRQLEGIV 106

Query: 115 HSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLV 174
              R T+++   WR  LA+KEK  RE++ KEK   K +++LD+MHEAYEK+LK AE++LV
Sbjct: 107 LLSRPTEIEVHGWRAHLAEKEKQCREEAEKEKRVWKSLIQLDEMHEAYEKLLKSAEKKLV 166

Query: 175 KIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLR 234
           ++Y+             +EV+E V+G+LQEA GK +E++++S R L+ LPEAFGRI GL 
Sbjct: 167 RMYDGDTGDVGGEGDGSDEVDEVVVGILQEADGKGMERIEISDRKLKVLPEAFGRIPGLL 226

Query: 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294
           ++  S N L VIPDSI GL NLEELNL++N LE+LPDSIG L  LK+L+VSGNKL+ALPD
Sbjct: 227 VLDASKNLLSVIPDSIVGLQNLEELNLSANHLESLPDSIGFLQKLKLLNVSGNKLTALPD 286

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
           +I  CRSLVELD SFN L+YLPTNIG+EL NL+KL++ LNKIR LP+SI E+ SL +LDA
Sbjct: 287 AICQCRSLVELDVSFNDLSYLPTNIGYELPNLKKLMIQLNKIRSLPSSICELKSLCYLDA 346

Query: 355 HFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTF 414
           H NELHGLPA  G+LT LEILN+SSNF D+KELPETFGELTNLKELD+SNNQIHALP+TF
Sbjct: 347 HVNELHGLPAAFGRLTTLEILNLSSNFADLKELPETFGELTNLKELDVSNNQIHALPDTF 406

Query: 415 GRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNE 474
           G LD L KLNLE+NP+ +PPVE+V +GV A+KTFMAKRW+ +L EEE +S      N   
Sbjct: 407 GCLDNLTKLNLEQNPLELPPVEIVNQGVQAIKTFMAKRWIAMLEEEELKS------NQEM 460

Query: 475 GEQMPTGWLTRSTSWLKTVGENVSGILGGG----NSPRDPCLDQQL 516
            EQ   GWLTRSTSWLK V  NV G +G       SP+ P  D  L
Sbjct: 461 QEQGEGGWLTRSTSWLKNVSGNVVGYIGTAVGSPMSPKSPTTDAYL 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513766|ref|XP_003525581.1| PREDICTED: uncharacterized protein LOC100782818 [Glycine max]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 300/525 (57%), Positives = 389/525 (74%), Gaps = 23/525 (4%)

Query: 1   MDPNPKTFPILSFVMQRLPTFGPRT--------AAEYDVEQPDPSSSGQAQSQKNPVIVD 52
           MDP+P   PILS+VM RLP+FG RT        +  +D+EQ          S     +V 
Sbjct: 1   MDPHPGNHPILSYVMSRLPSFGARTPTAVSPSHSHNFDIEQ-------PPSSSSPSSVVG 53

Query: 53  QMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEG 112
           QMP+L+DP+++++M RAI DV QTRSVL+ +G RP HE +D  KAR+ ++++ L++ L+ 
Sbjct: 54  QMPNLADPEMLASMTRAISDVSQTRSVLKLIGARPTHEQVDDAKARLADLEAHLSRQLQE 113

Query: 113 IVHSIRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEER 172
           IV   R  ++D+  WR  +A+KE A++E + KEK   K +++LD MH++YEK+LK+AE+R
Sbjct: 114 IVGLPRPPEIDEPRWRAHVAEKENAIKESTEKEKRVLKSLIQLDQMHDSYEKLLKDAEKR 173

Query: 173 LVKIYE-RAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIA 231
           LVKIYE   E+  +       EV EEV  +L EA GK +E+VDLS + L+ LP AFG I 
Sbjct: 174 LVKIYEGDGESDNDNNNDNEGEVKEEVEEILHEAHGKGIERVDLSGKRLKLLPPAFGHIP 233

Query: 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA 291
            L ++ +S N L VIPDSI+GL NLEELNL+SN LE+LPDSIGLL  LK L+VSGNKLSA
Sbjct: 234 ALVVLDVSTNQLSVIPDSISGLANLEELNLSSNALESLPDSIGLLQKLKFLNVSGNKLSA 293

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
           LPDSIS CRSLVELDA FN L YLPTNIG+EL+NLQKL++ LNKIR LP+S+ EM SLR+
Sbjct: 294 LPDSISQCRSLVELDAGFNSLTYLPTNIGYELLNLQKLMIQLNKIRSLPSSVCEMKSLRY 353

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
           LDAHFNEL GLP  IGKLTNLE+LN+SSNF+D++ELPETFG+L +L+ELDLSNNQIHALP
Sbjct: 354 LDAHFNELRGLPIAIGKLTNLEVLNLSSNFSDLRELPETFGDLISLRELDLSNNQIHALP 413

Query: 412 NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGN 471
           +TFGRLD L KLNL++NP+ +PP+E+V +GV AVK+FM +RW+DIL EEER+S   L+  
Sbjct: 414 DTFGRLDSLTKLNLDQNPVEVPPMEIVNQGVQAVKSFMVQRWIDILAEEERKSTQVLQ-- 471

Query: 472 NNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
             EGE     WLTRSTSWLK V ENV+ ++    +P++  LDQQL
Sbjct: 472 --EGE---NDWLTRSTSWLKNVSENVTEMIMSPRTPKESFLDQQL 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810689|ref|XP_002873228.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319065|gb|EFH49487.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 296/516 (57%), Positives = 377/516 (73%), Gaps = 18/516 (3%)

Query: 4   NPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLV 63
           NPK FP+LS+V+ RLP+F  ++++  DV+ P   S   + S  +  IV QMPHL+ P ++
Sbjct: 6   NPKNFPVLSYVLDRLPSFTAKSSSSSDVDPPPSKSDPSSSSNHSIEIVTQMPHLAHPDVL 65

Query: 64  SAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVD 123
           ++M  AI DV QTRSVL+TLGPRPDHET+DK +AR+ EID+ L++S E I  S  + DV 
Sbjct: 66  ASMTNAIADVAQTRSVLRTLGPRPDHETVDKARARLREIDASLSESFEEIALSPNDIDV- 124

Query: 124 QFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENG 183
                   A+KE+  RE   +EK     IL+L+++HE+YEK+LKEAEERLV+IYE AE  
Sbjct: 125 --------AEKEQKRREAVDQEKTWYNSILKLNELHESYEKLLKEAEERLVRIYESAEKN 176

Query: 184 EEEVPPVREEVNEEVM---GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSN 240
              V      V E       +LQ+AA   L++VDLS R L+ LPEAFG+I GL +++L N
Sbjct: 177 AAAVAEEEAAVVEVNEEVVSILQQAAENPLDRVDLSGRKLKLLPEAFGKIQGLLVLNLYN 236

Query: 241 NHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCR 300
           N LE IPDSIAGL NL EL++++N LETLPDSIGLL  LKIL+VS NKL+ LPDSI HC 
Sbjct: 237 NQLEAIPDSIAGLQNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHCG 296

Query: 301 SLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360
           SLV LDAS+N L YLPTNIG ELV ++KLL+ LNKIR LPTSIGEM SLR+LDAHFNEL+
Sbjct: 297 SLVVLDASYNNLTYLPTNIGFELVKVEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELN 356

Query: 361 GLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL 420
           GLP + G LTNLE LN+SSNF+D+++LP +FG+L +L+ELDLSNNQIH+LP+ FG L  L
Sbjct: 357 GLPNSFGLLTNLEYLNLSSNFSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLVNL 416

Query: 421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT 480
            KLNL++NP+V+PP EVVK+GVGAVK +M KRW+ +L EEE+ + +K     +E +Q  T
Sbjct: 417 TKLNLDQNPLVVPPEEVVKQGVGAVKMYMGKRWVSMLEEEEKMANMK-----DEMDQTNT 471

Query: 481 GWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
            WLTR+TS LKT    VS  L G NSPRDP LDQQL
Sbjct: 472 DWLTRTTSKLKTYVTEVSEYL-GSNSPRDPYLDQQL 506

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330985|ref|NP_187741.2| ras group-related LRR 9 protein [Arabidopsis thaliana] gi|18175638|gb|AAL59901.1| unknown protein [Arabidopsis thaliana] gi|21689861|gb|AAM67491.1| unknown protein [Arabidopsis thaliana] gi|57868160|gb|AAW57418.1| plant intracellular Ras-group-related LRR protein 9 [Arabidopsis thaliana] gi|332641510|gb|AEE75031.1| ras group-related LRR 9 protein [Arabidopsis thaliana]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 298/523 (56%), Positives = 383/523 (73%), Gaps = 35/523 (6%)

Query: 2   DPNPKTFPILSFVMQRLPTFGPRTAAE----YDVEQPDPSSSGQAQSQKNPVIVDQMPHL 57
           +PNPK FP+LS+V+ RLP+F  ++ +     +D+EQ        + S  +  IV QMPHL
Sbjct: 4   EPNPKNFPVLSYVLARLPSFTAKSPSSSVPPFDIEQ-----PPPSSSSSSIEIVTQMPHL 58

Query: 58  SDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSI 117
           + P ++++M  AI DV +TRS+L+TLGPRPDHE++DK +A++ EI+S L++S E I    
Sbjct: 59  TQPDVLASMTSAISDVAETRSILRTLGPRPDHESVDKARAKLSEIESFLSESFEDIAL-- 116

Query: 118 RETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIY 177
             TD          A K++  R++  +EK  C+ IL+LD++H +YEK+LKEAEERLV+IY
Sbjct: 117 --TDA---------AAKDEKRRQEMDQEKTWCESILKLDEVHASYEKLLKEAEERLVRIY 165

Query: 178 ERAENG----EEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGL 233
           E AE      EE V  V  EVNEEV+G+LQ A+   +++VDLS R LR LPEAFGRI GL
Sbjct: 166 ESAEKNAAEDEENVAAV--EVNEEVVGILQHASANPVDRVDLSGRKLRLLPEAFGRIQGL 223

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP 293
            +++LSNN LE IPDSIAGL +L EL++++N LETLPDSIGLL  LKIL+VS NKL++LP
Sbjct: 224 LVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLP 283

Query: 294 DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD 353
           DSI  C SLV LD SFNRL YLPTNIG ELVNL+KLLV  NKIR  PTSIGEM SL+HLD
Sbjct: 284 DSICRCGSLVILDVSFNRLTYLPTNIGPELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLD 343

Query: 354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
           AHFNEL+GLP +   LTNLE LN+SSNF+D+K+LP +FGEL +L+ELDLSNNQIHALP+T
Sbjct: 344 AHFNELNGLPDSFVLLTNLEYLNLSSNFSDLKDLPFSFGELISLQELDLSNNQIHALPDT 403

Query: 414 FGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNN 473
           FG LD L KLN+++NP+V+PP EVVKEGV AVKT+M +R + +L EEE++ M +     N
Sbjct: 404 FGTLDSLTKLNVDQNPLVVPPEEVVKEGVEAVKTYMGQRRISMLEEEEKKKMEEEMEQAN 463

Query: 474 EGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
                  GWLTR+TS LKT   +VS  L G NSPRDP L++QL
Sbjct: 464 ------AGWLTRTTSKLKTYVADVSEYL-GSNSPRDPYLERQL 499

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239256|ref|NP_196204.1| plant intracellular ras group-related LRR 1 [Arabidopsis thaliana] gi|9759110|dbj|BAB09679.1| unnamed protein product [Arabidopsis thaliana] gi|53850485|gb|AAU95419.1| At5g05850 [Arabidopsis thaliana] gi|55733731|gb|AAV59262.1| At5g05850 [Arabidopsis thaliana] gi|57868144|gb|AAW57410.1| plant intracellular Ras-group-related LRR protein 1 [Arabidopsis thaliana] gi|110737851|dbj|BAF00864.1| hypothetical protein [Arabidopsis thaliana] gi|332003549|gb|AED90932.1| plant intracellular ras group-related LRR 1 [Arabidopsis thaliana]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/516 (56%), Positives = 374/516 (72%), Gaps = 18/516 (3%)

Query: 4   NPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPVIVDQMPHLSDPKLV 63
           NPK FP+LS+V+ RLP+F  ++++  DVE P   S   + S  +  IV QMPHL+ P ++
Sbjct: 6   NPKNFPVLSYVLDRLPSFTAKSSSSSDVEPPPSKSDPSSSSNHSIEIVTQMPHLAHPDVL 65

Query: 64  SAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVD 123
           ++M  A  DV QTRSVL+TLGPRPDHET+D+ +AR+ EID+ L++S E I  S  + DV 
Sbjct: 66  ASMTNATADVSQTRSVLRTLGPRPDHETVDRARARLREIDASLSESFEEIALSPNDIDV- 124

Query: 124 QFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENG 183
                   A+KE+  RE   +EK   K IL+L+++HE+YEK+LKEAEERLV+IYE AE  
Sbjct: 125 --------AEKEQKRREAVEQEKIWYKSILKLNELHESYEKLLKEAEERLVRIYESAEKN 176

Query: 184 EEEVPPVREEVNEEVM---GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSN 240
              V        E       +LQ+AA   L++VDLS R L+ LPEAFG+I GL +++L N
Sbjct: 177 AAAVAEEEAAEVEVNEEVVSILQQAAENPLDRVDLSGRKLKLLPEAFGKIQGLLVLNLYN 236

Query: 241 NHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCR 300
           N L+ IPDSIAGL NL EL++++N LETLPDSIGLL  LKIL+VS NKL+ LPDSI HC 
Sbjct: 237 NQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHCG 296

Query: 301 SLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360
           SLV LDAS+N L YLPTNIG ELV L+KLL+ LNKIR LPTSIGEM SLR+LDAHFNEL+
Sbjct: 297 SLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNELN 356

Query: 361 GLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL 420
           GLP + G LTNLE LN+SSNF+D+++LP +FG+L +L+ELDLSNNQIH+LP+ FG L  L
Sbjct: 357 GLPNSFGLLTNLEYLNLSSNFSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLVNL 416

Query: 421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT 480
            KLNL++NP+V+PP EVVK+GV AVK +M KRW+ +L EEE+ + +K     +E +Q  T
Sbjct: 417 TKLNLDQNPLVVPPDEVVKQGVDAVKMYMGKRWVSMLEEEEKMANMK-----DEMDQTNT 471

Query: 481 GWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
            WLTR+TS LKT    VS  L G N PRDP LDQQL
Sbjct: 472 DWLTRTTSKLKTYVTEVSEYL-GSNPPRDPYLDQQL 506

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	516
TAIR|locus:2166429	506	PIRL1 "plant intracellular ras	0.963	0.982	0.520	1.6e-127
TAIR|locus:2074728	499	PIRL9 "plant intracellular ras	0.949	0.981	0.520	1.4e-126
TAIR|locus:2010326	464	PIRL3 "AT1G12970" [Arabidopsis	0.730	0.812	0.431	9.7e-80
TAIR|locus:2088807	471	PIRL2 "AT3G26500" [Arabidopsis	0.701	0.768	0.428	4.3e-77
TAIR|locus:2117617	549	PIRL4 "plant intracellular ras	0.428	0.402	0.400	1.4e-42
TAIR|locus:2047595	380	PIRL6 "AT2G19330" [Arabidopsis	0.428	0.581	0.468	1.1e-41
TAIR|locus:2827587	526	PIRL5 "AT2G17440" [Arabidopsis	0.428	0.420	0.400	1.2e-41
TAIR|locus:2123899	373	PIRL7 "plant intracellular ras	0.428	0.592	0.468	2.8e-41
TAIR|locus:2120825	383	PIRL8 "AT4G26050" [Arabidopsis	0.432	0.582	0.424	3.7e-39
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.420	0.310	0.354	1.3e-25

TAIR|locus:2166429 PIRL1 "plant intracellular ras group-related LRR 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
 Identities = 269/517 (52%), Positives = 349/517 (67%)

Query:     4 NPKTFPILSFVMQRLPTFGPRTAAEYDVEQPDPSSSGQAQSQKNPV-IVDQMPHLSDPKL 62
             NPK FP+LS+V+ RLP+F  ++++  DVE P PS S  + S  + + IV QMPHL+ P +
Sbjct:     6 NPKNFPVLSYVLDRLPSFTAKSSSSSDVEPP-PSKSDPSSSSNHSIEIVTQMPHLAHPDV 64

Query:    63 VSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSIRETDV 122
             +++M  A  DV QTRSVL+TLGPRPDHET+D+ +AR+ EID+ L++S E I  ++   D+
Sbjct:    65 LASMTNATADVSQTRSVLRTLGPRPDHETVDRARARLREIDASLSESFEEI--ALSPNDI 122

Query:   123 DQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAXX 182
             D       +A+KE+  RE   +EK   K IL+L+++HE+YEK+LKEAEERLV+IYE A  
Sbjct:   123 D-------VAEKEQKRREAVEQEKIWYKSILKLNELHESYEKLLKEAEERLVRIYESAEK 175

Query:   183 XXXXXXXXXXXXXXXX---MGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLS 239
                                + +LQ+AA   L++VDLS R L+ LPEAFG+I GL +++L 
Sbjct:   176 NAAAVAEEEAAEVEVNEEVVSILQQAAENPLDRVDLSGRKLKLLPEAFGKIQGLLVLNLY 235

Query:   240 NNHLEVIPDSIAGXXXXXXXXXXXXXXXXXPDSIGLLDNLKILDVSGNKLSALPDSISHC 299
             NN L+ IPDSIAG                 PDSIGLL  LKIL+VS NKL+ LPDSI HC
Sbjct:   236 NNQLQAIPDSIAGLHNLLELDVSTNFLETLPDSIGLLSKLKILNVSCNKLTTLPDSICHC 295

Query:   300 RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNEL 359
              SLV LDAS+N L YLPTNIG ELV L+KLL+ LNKIR LPTSIGEM SLR+LDAHFNEL
Sbjct:   296 GSLVVLDASYNNLTYLPTNIGFELVKLEKLLIHLNKIRSLPTSIGEMRSLRYLDAHFNEL 355

Query:   360 HGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDK 419
             +GLP + G LTNLE LN+SSNF+D+++LP +FG+L +L+ELDLSNNQIH+LP+ FG L  
Sbjct:   356 NGLPNSFGLLTNLEYLNLSSNFSDLQDLPASFGDLISLQELDLSNNQIHSLPDAFGTLVN 415

Query:   420 LIKLNLEENPMXXXXXXXXXXXXXXXXTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMP 479
             L KLNL++NP+                 +M KRW+ +L EEE+ + +K     +E +Q  
Sbjct:   416 LTKLNLDQNPLVVPPDEVVKQGVDAVKMYMGKRWVSMLEEEEKMANMK-----DEMDQTN 470

Query:   480 TGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
             T WLTR+TS LKT    VS  LG  N PRDP LDQQL
Sbjct:   471 TDWLTRTTSKLKTYVTEVSEYLGS-NPPRDPYLDQQL 506

GO:0005634 "nucleus" evidence=ISM

GO:0009555 "pollen development" evidence=IGI

GO:0055046 "microgametogenesis" evidence=IGI

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2074728 PIRL9 "plant intracellular ras group-related LRR 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 271/521 (52%), Positives = 348/521 (66%)

Query:     2 DPNPKTFPILSFVMQRLPTFGPRTAAE----YDVEQPDPSSSGQAQSQKNPVIVDQMPHL 57
             +PNPK FP+LS+V+ RLP+F  ++ +     +D+EQP PSSS  +       IV QMPHL
Sbjct:     4 EPNPKNFPVLSYVLARLPSFTAKSPSSSVPPFDIEQPPPSSSSSSIE-----IVTQMPHL 58

Query:    58 SDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKSLEGIVHSI 117
             + P ++++M  AI DV +TRS+L+TLGPRPDHE++DK +A++ EI+S L++S E I    
Sbjct:    59 TQPDVLASMTSAISDVAETRSILRTLGPRPDHESVDKARAKLSEIESFLSESFEDIAL-- 116

Query:   118 RETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIY 177
               TD          A K++  R++  +EK  C+ IL+LD++H +YEK+LKEAEERLV+IY
Sbjct:   117 --TDA---------AAKDEKRRQEMDQEKTWCESILKLDEVHASYEKLLKEAEERLVRIY 165

Query:   178 ERAXXXXXXXXXXXXXXXXXX--MGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRL 235
             E A                    +G+LQ A+   +++VDLS R LR LPEAFGRI GL +
Sbjct:   166 ESAEKNAAEDEENVAAVEVNEEVVGILQHASANPVDRVDLSGRKLRLLPEAFGRIQGLLV 225

Query:   236 MSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXXPDSIGLLDNLKILDVSGNKLSALPDS 295
             ++LSNN LE IPDSIAG                 PDSIGLL  LKIL+VS NKL++LPDS
Sbjct:   226 LNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDS 285

Query:   296 ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAH 355
             I  C SLV LD SFNRL YLPTNIG ELVNL+KLLV  NKIR  PTSIGEM SL+HLDAH
Sbjct:   286 ICRCGSLVILDVSFNRLTYLPTNIGPELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAH 345

Query:   356 FNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFG 415
             FNEL+GLP +   LTNLE LN+SSNF+D+K+LP +FGEL +L+ELDLSNNQIHALP+TFG
Sbjct:   346 FNELNGLPDSFVLLTNLEYLNLSSNFSDLKDLPFSFGELISLQELDLSNNQIHALPDTFG 405

Query:   416 RLDKLIKLNLEENPMXXXXXXXXXXXXXXXXTFMAKRWLDILLEEERRSMLKLEGNNNEG 475
              LD L KLN+++NP+                T+M +R + +L EEE++ M        E 
Sbjct:   406 TLDSLTKLNVDQNPLVVPPEEVVKEGVEAVKTYMGQRRISMLEEEEKKKM------EEEM 459

Query:   476 EQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPCLDQQL 516
             EQ   GWLTR+TS LKT   +VS  LG  NSPRDP L++QL
Sbjct:   460 EQANAGWLTRTTSKLKTYVADVSEYLGS-NSPRDPYLERQL 499

GO:0005634 "nucleus" evidence=ISM

GO:0009555 "pollen development" evidence=IGI

GO:0055046 "microgametogenesis" evidence=IGI

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2010326 PIRL3 "AT1G12970" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 168/389 (43%), Positives = 246/389 (63%)

Query:   130 QLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAXXXXXXXXX 189
             ++ + +    ED+AKE+     ++ L+++HE YEK L++ EE + ++Y  A         
Sbjct:    86 EIKENDSLSPEDAAKEEQVYAAVVSLEEVHEGYEKQLRDLEEEIGRVYASAVESLSGGDE 145

Query:   190 XXXXXXXXXMGLLQEAA-GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD 248
                      + ++++A  G  +E++DLS   L+ LP+A G+I GL  +++S N+L  +PD
Sbjct:   146 VNEEV----LAVIKDAEDGGVVERIDLSDHELKLLPDALGKIVGLVSLNVSRNNLRFLPD 201

Query:   249 SIAGXXXXXXXXXXXXXXXXXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS 308
             +I+G                 PDSIGLL NL+IL+V+GNKL+ LP+SI+ CRSLVELDAS
Sbjct:   202 TISGLEKLEELDLSSNRLVFLPDSIGLLLNLRILNVTGNKLTLLPESIAQCRSLVELDAS 261

Query:   309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK 368
             FN L  LP N G+ L+NL++L + LNKIRF P SI EM SLR+LDAH NE+HGLP  IG+
Sbjct:   262 FNNLTSLPANFGYGLLNLERLSIQLNKIRFFPNSICEMRSLRYLDAHMNEIHGLPIAIGR 321

Query:   369 LTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
             LTNLE++N+SSNF+D+ ELP+T  +L NL+ELDLSNNQI  LP++F RL+KL KLNL++N
Sbjct:   322 LTNLEVMNLSSNFSDLIELPDTISDLANLRELDLSNNQIRVLPDSFFRLEKLEKLNLDQN 381

Query:   429 PMXXXXXXXXXXXXXXXXTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTS 488
             P+                 FM KRW +++ EE+ RS+++ E    +G    TGWL+  +S
Sbjct:   382 PLEYPPQEMVNQSAEAVREFMRKRWEEMVEEEQLRSVIEAE--KQQGGA--TGWLSWGSS 437

Query:   489 WLKTVGENVSGILGGG-NSPRDPCLDQQL 516
              + ++     G  GG    P++  LD+QL
Sbjct:   438 IVTSLFSG--GTHGGAAKKPKNSFLDEQL 464

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2088807 PIRL2 "AT3G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 159/371 (42%), Positives = 236/371 (63%)

Query:   140 EDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAXXXXXXXXXXXXXXXXXXM 199
             E++AKE      ++ LD++H++YEK LK+ EE L ++Y                     +
Sbjct:    94 EEAAKESEIYAGVVRLDEVHDSYEKKLKDTEEELSRVYS---TEVESMLRSGEEVNEKVL 150

Query:   200 GLLQEA-AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXX 258
              +L+EA +G ++E++DLSS+ L+ +PEAF ++ GL  ++LS N L  IPD+I+       
Sbjct:   151 AVLKEAESGGTVERIDLSSQELKLIPEAFWKVVGLVYLNLSGNDLTFIPDAISKLKKLEE 210

Query:   259 XXXXXXXXXXXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTN 318
                        PDSIG+L NL+IL+V+ N L+ALP+SI+HCRSLVELDAS+N L  LPTN
Sbjct:   211 LDVSSNSLESLPDSIGMLLNLRILNVNANNLTALPESIAHCRSLVELDASYNNLTSLPTN 270

Query:   319 IGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVS 378
             IG+ L NL++L + LNK+R+ P SI EM +L++LDAH NE+HG+P +IG+LT LE+LN+S
Sbjct:   271 IGYGLQNLERLSIQLNKLRYFPGSISEMYNLKYLDAHMNEIHGIPNSIGRLTKLEVLNLS 330

Query:   379 SNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMXXXXXXXX 438
             SNF ++  +P+T  +LTNL+ELDLSNNQI A+P++F RL KL KLNL++NP+        
Sbjct:   331 SNFNNLMGVPDTITDLTNLRELDLSNNQIQAIPDSFYRLRKLEKLNLDQNPLEIPSQEVA 390

Query:   439 XXXXXXXXTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVS 498
                      FM KRW DI+ E+++R  ++ E + +E      GW+   TS +  +   V+
Sbjct:   391 TQGAEVVREFMRKRWGDIMAEQQQRIGVEAERHGDEN-----GWVYWGTSMVTNLVSGVT 445

Query:   499 GILGGGNSPRD 509
               +G G +  D
Sbjct:   446 HTIGFGGATSD 456

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2117617 PIRL4 "plant intracellular ras group-related LRR 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
 Identities = 89/222 (40%), Positives = 126/222 (56%)

Query:   209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXX 268
             SL ++DL S  +  LPE+ G +  L  ++L +N L  +P + +                 
Sbjct:   270 SLTKLDLHSNRIGQLPESIGELLNLVYLNLGSNQLSSLPSAFSRLVRLEELDLSCNNLPI 329

Query:   269 XPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
              P+SIG L +LK LDV  N +  +P SI  C SL+EL A +N+L  LP  IG ++  L+ 
Sbjct:   330 LPESIGSLVSLKKLDVETNDIEEIPYSIGGCSSLIELRADYNKLKALPEAIG-KITTLEI 388

Query:   329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
             L V  N IR LPT++  +ASL+ LD  FNEL  +P ++   T L  LN+ +NF DM  LP
Sbjct:   389 LSVRYNNIRQLPTTMSSLASLKELDVSFNELESVPESLCFATTLVKLNIGNNFADMVSLP 448

Query:   389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
              + G L  L+ELD+SNNQI  LP++F  L KL     +ENP+
Sbjct:   449 RSIGNLEMLEELDISNNQIRVLPDSFKMLTKLRVFRAQENPL 490

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2047595 PIRL6 "AT2G19330" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 104/222 (46%), Positives = 133/222 (59%)

Query:   210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGXXXXXXXXXXXXXXXX 268
             LE V+LS   L  LP     +A +  + LSNNHL+ IP+S+ A                 
Sbjct:    62 LEVVNLSGMALESLPNPSLNLAQICKLDLSNNHLQTIPESLTARLLNLIALDVHSNQIKA 121

Query:   269 XPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
              P+SIG L  LK L+VSGN L + P SI HCRSL EL+A+FN+L  LP +IG EL NL+K
Sbjct:   122 LPNSIGCLSKLKTLNVSGNFLVSFPKSIQHCRSLEELNANFNKLIRLPDSIGFELTNLRK 181

Query:   329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
             L +  NK+  LP SI  + SLR LDA  N L  LP  +  L NLEILNVS NF  +  LP
Sbjct:   182 LSINSNKLISLPISITHLTSLRVLDARLNCLMILPDDLENLINLEILNVSQNFQYLSALP 241

Query:   389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
              + G L NL ELD+S N+I  LP + G + +L KL++E NP+
Sbjct:   242 SSIGLLMNLIELDVSYNKITVLPESIGCMRRLRKLSVEGNPL 283

GO:0008150 "biological_process" evidence=ND

GO:0042023 "DNA endoreduplication" evidence=RCA

TAIR|locus:2827587 PIRL5 "AT2G17440" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 89/222 (40%), Positives = 123/222 (55%)

Query:   209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXX 268
             SL ++DL S  +  LPE+ G +  L  ++LS N L  +P S                   
Sbjct:   254 SLTRLDLHSNRIGQLPESIGDLLNLVNLNLSGNQLSSLPSSFNRLIHLEELDLSSNSLSI 313

Query:   269 XPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
              P+SIG L +LK LDV  N +  +P SIS C S+ EL A +NRL  LP  +G +L  L+ 
Sbjct:   314 LPESIGSLVSLKKLDVETNNIEEIPHSISGCSSMEELRADYNRLKALPEAVG-KLSTLEI 372

Query:   329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
             L V  N IR LPT++  MA+L+ LD  FNEL  +P ++     L  LN+ +NF +++ LP
Sbjct:   373 LTVRYNNIRQLPTTMSSMANLKELDVSFNELESVPESLCYAKTLVKLNIGNNFANLRSLP 432

Query:   389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
                G L  L+ELD+SNNQI  LP +F  L  L  L  E+NP+
Sbjct:   433 GLIGNLEKLEELDMSNNQIRFLPYSFKTLSNLRVLQTEQNPL 474

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2123899 PIRL7 "plant intracellular ras group-related LRR 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 104/222 (46%), Positives = 134/222 (60%)

Query:   210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGXXXXXXXXXXXXXXXX 268
             LE V+LS   L+ LP     +A +  + LSNNH++ IP+S+ A                 
Sbjct:    55 LEVVNLSGMALQSLPNPSLNLANICKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKA 114

Query:   269 XPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
              P+SIG L  LKIL+VSGN L +LP +I +CRSL EL+A+FN L  LP NIG EL NL+K
Sbjct:   115 LPNSIGCLSKLKILNVSGNFLVSLPQTIQNCRSLEELNANFNELIRLPDNIGLELTNLKK 174

Query:   329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
             L V  NK+  LP +I  + SLR LDA  N L  LP  +  L NLEILNVS NF  +  LP
Sbjct:   175 LCVNSNKLISLPATITCLTSLRVLDARLNCLMILPEDLENLINLEILNVSQNFQYLSALP 234

Query:   389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
              + G L NL ELD+S N+I  LP + G + +L KL+ E NP+
Sbjct:   235 SSIGLLLNLLELDISYNKITVLPESIGCMRRLRKLSAEGNPL 276

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2120825 PIRL8 "AT4G26050" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 95/224 (42%), Positives = 132/224 (58%)

Query:   208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS-IAGXXXXXXXXXXXXXX 266
             ++++ +DLS   L  L  +   +A +  + LSNN+++ IP+S +A               
Sbjct:    57 QNIKTLDLSGMSLASLSASSINLASISKLDLSNNNIQKIPESLVARMLNLWALDLQSNQL 116

Query:   267 XXXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
                P+SIG L  LK L+VSGN L +LP +I  CRSL EL+A+FN L  LP  IG EL NL
Sbjct:   117 KTLPNSIGCLSKLKFLNVSGNYLQSLPKTIEDCRSLEELNANFNELTRLPDAIGFELTNL 176

Query:   327 QKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
              KL V  NK+  LP S+  + SLR LDA  N L  LP  +  L NL++LNVS NF  +  
Sbjct:   177 TKLSVNSNKLVLLPNSVSYLTSLRVLDARLNRLSSLPEDLENLVNLQVLNVSQNFQHLTT 236

Query:   387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
             LP + G L +L ELD+S N I  LP++ G L ++ KL++E NP+
Sbjct:   237 LPYSVGLLISLVELDVSYNGITVLPDSLGCLRRIQKLSVEGNPL 280

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 314 (115.6 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 78/220 (35%), Positives = 114/220 (51%)

Query:   209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXX 268
             S+  + L+   L  LP   G +  LR++   +N L  IP SI                  
Sbjct:   129 SITILSLNETSLTLLPSNIGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEA 188

Query:   269 XPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
              P  IG L +L+   V  N L++LPDSIS CR L +LD S N++  LP N+G  + NL  
Sbjct:   189 LPAEIGKLTSLREFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGR-MPNLTD 247

Query:   329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
             L + +N+I  LP+S GE+  L+ L A  N LH L + IGK  +L  L +  NF  + +LP
Sbjct:   248 LNISINEIIELPSSFGELKRLQMLKADRNSLHNLTSEIGKCQSLTELYLGQNF--LTDLP 305

Query:   389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
             +T G+L  L  L++  N +  +P+T G    L  L+L +N
Sbjct:   306 DTIGDLRQLTTLNVDCNNLSDIPDTIGNCKSLTVLSLRQN 345

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	516
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-19
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-06
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	8e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.003

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 93.1 bits (231), Expect = 2e-20
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 214 DLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI 273
           +LSS  L  LP +  R+  L L+S S        +++  L+ L  L+L  N L +    +
Sbjct: 53  NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISEL 112

Query: 274 GLLDNLKILDVSGNKLSALPDSISH-CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
             L NL  LD+  N ++ +P  I     +L ELD S N++  LP+ + + L NL+ L + 
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN-LPNLKNLDLS 171

Query: 333 LNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFG 392
            N +  LP  +  +++L +LD   N++  LP  I  L+ LE L++S+N   + EL  +  
Sbjct: 172 FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN--SIIELLSSLS 229

Query: 393 ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
            L NL  L+LSNN++  LP + G L  L  L+L  N +    
Sbjct: 230 NLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 6e-19
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 13/228 (5%)

Query: 210 LEQVDLSSRGLRF-LPEA-FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
           ++ ++LS+  L   +P+  F   + LR ++LSNN+          + NLE L+L++N+L 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLETLDLSNNMLS 153

Query: 268 -TLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDASFNRL-AYLPTNIGHELV 324
             +P+ IG   +LK+LD+ GN L   +P+S+++  SL  L  + N+L   +P  +G ++ 
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMK 212

Query: 325 NLQKLLVPLNKIRF-LPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSN-F 381
           +L+ + +  N +   +P  IG + SL HLD  +N L G +P+++G L NL+ L +  N  
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Query: 382 TDMKELPETFGELTNLKELDLSNNQIHA-LPNTFGRLDKLIKLNLEEN 428
           +    +P +   L  L  LDLS+N +   +P    +L  L  L+L  N
Sbjct: 273 SG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 86.2 bits (213), Expect = 4e-18
 Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 231 AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290
           + L+ + LS+N +E +P  +  L NL+ L+L+ N L  LP  +  L NL  LD+SGNK+S
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLR 350
            LP  I    +L ELD S N +  L +++ +   NL  L +  NK+  LP SIG +++L 
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIELLSSLSNLK-NLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL 410
            LD   N++  + + +G LTNL  L++S N             L  L    L N  +  L
Sbjct: 259 TLDLSNNQISSISS-LGSLTNLRELDLSGN---SLSNALPLIALLLLLLELLLNLLLT-L 313

Query: 411 PNTFGRLDKLIKLNLEENPMVI 432
                +L+ ++  N   +    
Sbjct: 314 KALELKLNSILLNNNILSNGET 335

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 209 SLEQVDLSSRGLRF-LPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLA-SNL 265
           SLE + L+S  L   +P   G++  L+ + L  N+L   IP  I GL +L  L+L  +NL
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
              +P S+G L NL+ L +  NKLS  +P SI   + L+ LD S N L+     +  +L 
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 325 NLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFT 382
           NL+ L +  N     +P ++  +  L+ L    N+  G +P  +GK  NL +L++S+N  
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN-N 367

Query: 383 DMKELPETFGELTNLKELDLSNNQIHA-LPNTFGRLDKLIKLNLEEN 428
              E+PE      NL +L L +N +   +P + G    L ++ L++N
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 73.2 bits (179), Expect = 1e-13
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 20/227 (8%)

Query: 189 PVREEVN-EEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP 247
           P +E  N EE +  +++    +  ++ L   GL  +P        +  + L NN L+ +P
Sbjct: 158 PAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPE--QITTLILDNNELKSLP 215

Query: 248 DSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDA 307
           +++ G  N++ L   SN L ++P +  L D ++ +++S N+++ LP+ +    +L  LD 
Sbjct: 216 ENLQG--NIKTLYANSNQLTSIPAT--LPDTIQEMELSINRITELPERLP--SALQSLDL 269

Query: 308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367
             N+++ LP N+  EL   + L V  N IR LP  +   + + HL+   N L  LP T+ 
Sbjct: 270 FHNKISCLPENLPEEL---RYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP 324

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTF 414
               L+ L    N   +  LP +      L+ LD+S NQI  LP T 
Sbjct: 325 --PGLKTLEAGEN--ALTSLPASLP--PELQVLDVSKNQITVLPETL 365

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 4/232 (1%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +L+ +DLS   L  LP+    ++ L  + LS N +  +P  I  L  LEEL+L++N + 
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII 222

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            L  S+  L NL  L++S NKL  LP+SI +  +L  LD S N+++ +       L NL+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--SLGSLTNLR 280

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKE 386
           +L +  N +      I  +  L         L      +   + L   N+ SN  T   E
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLL-ELLLNLLLTLKALELKLNSILLNNNILSNGETSSPE 339

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVV 438
                  L NL  LD + ++ +         + +  L       V   +E V
Sbjct: 340 ALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLLEKV 391

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 28/152 (18%)

Query: 233 LRLMSLS-NNHLEVIPDSIAGLVNLEELNLASNLL-ETLPDSIGLLDNLKILDVSGNKLS 290
           L+++SL+ N     +PDS  G   LE L+L+ N     +P  +G L  L  L +S NKLS
Sbjct: 454 LQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 291 A-LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL 349
             +PD +S C+ LV LD S N+L+      G                  +P S  EM  L
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLS------GQ-----------------IPASFSEMPVL 549

Query: 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSN 380
             LD   N+L G +P  +G + +L  +N+S N
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 34/237 (14%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLK 280
           +P+  G+   L ++ LS N+L   IP+ +    NL +L L SN LE  +P S+G   +L+
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407

Query: 281 ------------------------ILDVSGNKLSALPDSIS-HCRSLVELDASFNR-LAY 314
                                    LD+S N L    +S      SL  L  + N+    
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 315 LPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNL 372
           LP + G +   L+ L +  N+    +P  +G ++ L  L    N+L G +P  +     L
Sbjct: 468 LPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 373 EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA-LPNTFGRLDKLIKLNLEEN 428
             L++S N     ++P +F E+  L +LDLS NQ+   +P   G ++ L+++N+  N
Sbjct: 526 VSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 255 NLEELNLASNLLETLPDSI-GLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRL 312
           NL+ L+L++N L  +PD     L NLK+LD+SGN L+++ P++ S   SL  LD S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 7e-09
 Identities = 29/81 (35%), Positives = 53/81 (65%), Gaps = 3/81 (3%)

Query: 213 VDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TL 269
           + L ++GLR F+P    ++  L+ ++LS N +   IP S+  + +LE L+L+ N    ++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 270 PDSIGLLDNLKILDVSGNKLS 290
           P+S+G L +L+IL+++GN LS
Sbjct: 483 PESLGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 232 GLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKL 289
            L+ + LSNN L VIPD    GL NL+ L+L+ N L ++ P++   L +L+ LD+SGN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 65/273 (23%), Positives = 104/273 (38%), Gaps = 71/273 (26%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVN------LEELNLA 262
           SL +     RGL+ L +   +  GL+ + LS+N L   PD    L +      L+EL L 
Sbjct: 59  SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLN 116

Query: 263 SNLLETLPDSI---GLLD---NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP 316
           +N L      +   GL D    L+ L +  N+L         C +L +     NR     
Sbjct: 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS-----CEALAKA-LRANRD---- 166

Query: 317 TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILN 376
                    L++L +  N I          A +R L        GL A      NLE+L+
Sbjct: 167 ---------LKELNLANNGIG--------DAGIRAL------AEGLKA----NCNLEVLD 199

Query: 377 VSSN-FTD--MKELPETFGELTNLKELDLSNNQI------HALPNTFGRLDKLIKLNLEE 427
           +++N  TD     L ET   L +L+ L+L +N +                  L+ L+L  
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 428 NPMVIPPVEVVKEGVGAVKTFMAK----RWLDI 456
           N       ++  +G   +   +A+      LD+
Sbjct: 260 N-------DITDDGAKDLAEVLAEKESLLELDL 285

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 44/238 (18%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292
           LR + +S N L  +P    GL+   EL++ SN L  LP    L   L  L + GN+L++L
Sbjct: 244 LRTLEVSGNQLTSLPVLPPGLL---ELSIFSNPLTHLP---ALPSGLCKLWIFGNQLTSL 297

Query: 293 PDSISHCRSLVELDASFNRLAYLP----------------TNIGHELVNLQKLLVPLNKI 336
           P        L EL  S N+LA LP                T++      LQ+L V  N++
Sbjct: 298 PVLPP---GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQL 354

Query: 337 RFLPTSIGEMASLRHLDAHFNELHGLPATI-------GKLTNLEILNVSSNFTDMKELPE 389
             LPT   E+  L   +     L  LP+ +        +LT+L +L      +++KEL  
Sbjct: 355 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP-----SELKELMV 409

Query: 390 TFGELTNLK-------ELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE 440
           +   LT+L         L +  NQ+  LP +   L     +NLE NP+    ++ ++E
Sbjct: 410 SGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467

Length = 788

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 338 FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTN 396
           F+P  I ++  L+ ++   N + G +P ++G +T+LE+L++S N  +   +PE+ G+LT+
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTS 491

Query: 397 LKELDLSNNQIHA-LPNTFG-RLDKLIKLNLEENP 429
           L+ L+L+ N +   +P   G RL      N  +N 
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%)

Query: 314 YLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTN 371
           ++P +I  +L +LQ + +  N IR  +P S+G + SL  LD  +N  +G  P ++G+LT+
Sbjct: 433 FIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 372 LEILNVSSNF 381
           L ILN++ N 
Sbjct: 492 LRILNLNGNS 501

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 209 SLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLL 266
           +L+ +DLS+  L  +P  AF  +  L+++ LS N+L  I P++ +GL +L  L+L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNL 261
           L E   + L  + +    +R LP      +G+  +++ +N L  +P+++     L+ L  
Sbjct: 277 LPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEA 332

Query: 262 ASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH 321
             N L +LP S  L   L++LDVS N+++ LP+++    ++  LD S N L  LP N+  
Sbjct: 333 GENALTSLPAS--LPPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP- 387

Query: 322 ELVNLQKLLVPLNKIRFLPTSI 343
               LQ +    N +  LP S+
Sbjct: 388 --AALQIMQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 23/193 (11%)

Query: 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA 291
           G  ++++  + L  +PD +    ++  L +  N L +LP    L   L+ L+VSGN+L++
Sbjct: 202 GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTS 256

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
           LP        L+EL    N L +LP         L KL +  N++  LP        L+ 
Sbjct: 257 LPVLPP---GLLELSIFSNPLTHLPALPS----GLCKLWIFGNQLTSLPVL---PPGLQE 306

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
           L    N+L  LPA   +L  L   N  +  T +  LP      + L+EL +S+NQ+ +LP
Sbjct: 307 LSVSDNQLASLPALPSELCKLWAYN--NQLTSLPTLP------SGLQELSVSDNQLASLP 358

Query: 412 NTFGRLDKLIKLN 424
                L KL   N
Sbjct: 359 TLPSELYKLWAYN 371

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 371 NLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
           NL+ L++S+N   +  +P   F  L NLK LDLS N + ++ P  F  L  L  L+L  N
Sbjct: 1   NLKSLDLSNN--RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 429 P 429
            
Sbjct: 59  N 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 348 SLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQ 406
           +L+ LD   N L  +P      L NL++L++S N       PE F  L +L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSGNN 59

Query: 407 I 407
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 236 MSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-AL 292
           + L N  L   IP+ I+ L +L+ +NL+ N +   +P S+G + +L++LD+S N  + ++
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 293 PDSISHCRSLVELDASFNRLA-YLPTNIG 320
           P+S+    SL  L+ + N L+  +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN 412
           TNLE L++S+N   + +LP     L NL+ LDLS N+I  L  
Sbjct: 1   TNLETLDLSNN--QITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNL 261
           L E     L+ ++     L  LP +      L+++ +S N + V+P+++     +  L++
Sbjct: 319 LPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPP--TITTLDV 374

Query: 262 ASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRS 301
           + N L  LP++  L   L+I+  S N L  LP+S+ H R 
Sbjct: 375 SRNALTNLPEN--LPAALQIMQASRNNLVRLPESLPHFRG 412

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 278 NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           NLK LD+S N+L+ +PD       +L  LD S N L  +       L +L+ L +  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 255 NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP 293
           NLE L+L++N +  LP  +  L NL+ LD+SGNK++ L 
Sbjct: 2   NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
           TNL+ LDLSNNQI  LP     L  L  L+L  N 
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNK 34

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 44/241 (18%)

Query: 220 LRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNL-ASNLLETLPDSIGLLDN 278
           LR +P  F R   L  + +  + LE + D +  L  L  ++L  S  L+ +PD + +  N
Sbjct: 601 LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATN 658

Query: 279 LKILDVSG-NKLSALPDSISHCRSLVELDASF-NRLAYLPTNIGHELVNLQKL----LVP 332
           L+ L +S  + L  LP SI +   L +LD S    L  LPT I     NL+ L    L  
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-----NLKSLYRLNLSG 713

Query: 333 LNKIRFLP-------------TSIGEMASLRHLDAHFNELHGLPATIGKLTN-------- 371
            ++++  P             T+I E  S   L+ + +EL        KL          
Sbjct: 714 CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLE-NLDELILCEMKSEKLWERVQPLTPL 772

Query: 372 LEILNVS------SNFTDMKELPETFGELTNLKELDLSN-NQIHALPNTFGRLDKLIKLN 424
           + +L+ S      S+   + ELP +   L  L+ L++ N   +  LP T   L+ L  L+
Sbjct: 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP-TGINLESLESLD 831

Query: 425 L 425
           L
Sbjct: 832 L 832

syringae 6; Provisional. Length = 1153

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNL 261
           L       +  +++ S  L  LPE      GL+ +    N L  +P S+     L+ L++
Sbjct: 298 LPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLPP--ELQVLDV 353

Query: 262 ASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH 321
           + N +  LP++  L   +  LDVS N L+ LP+++    +L  + AS N L  LP ++ H
Sbjct: 354 SKNQITVLPET--LPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPH 409

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 301 SLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNEL 359
           +L  LD S NRL  +P      L NL+ L +  N +  + P +   + SLR LD   N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 44/184 (23%), Positives = 64/184 (34%), Gaps = 31/184 (16%)

Query: 275 LLDNLKILDVSGNKL-----SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
            L  L++L + GN L      AL  ++    SL EL  S N    +P  +   L  L K 
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80

Query: 330 LVPLNKIRFLPTSIGEMA-----------SLRHLDAHFNEL---------HGLPATIGKL 369
              L ++     ++G              SL+ L  + N L          GL      L
Sbjct: 81  -CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139

Query: 370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQ-----IHALPNTFGRLDKLIKLN 424
             L +          + L +      +LKEL+L+NN      I AL         L  L+
Sbjct: 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD 199

Query: 425 LEEN 428
           L  N
Sbjct: 200 LNNN 203

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 45/129 (34%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 231 AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290
           +GL+ +S+S+N L  +P   + L  L   N   N L +LP    L   LK L VSGN+L+
Sbjct: 342 SGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTSLP---ALPSGLKELIVSGNRLT 395

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLR 350
           +LP   S    L EL  S NRL  LP         L  L V  N++  LP S+  ++S  
Sbjct: 396 SLPVLPSE---LKELMVSGNRLTSLPMLPS----GLLSLSVYRNQLTRLPESLIHLSSET 448

Query: 351 HLDAHFNEL 359
            ++   N L
Sbjct: 449 TVNLEGNPL 457

Length = 788

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP 316
           NL+ LD+S N+++ LP  +S+  +L  LD S N++  L 
Sbjct: 2   NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP 270
           L  + LSNN +  +P  ++ L NLE L+L+ N +  L 
Sbjct: 3   LETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	516
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.5
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.47
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.43
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.41
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.4
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.3
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
PLN03150	623	hypothetical protein; Provisional	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.52
PLN03150	623	hypothetical protein; Provisional	98.51
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
PRK15386	426	type III secretion protein GogB; Provisional	98.33
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.33
PRK15386	426	type III secretion protein GogB; Provisional	98.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.79
KOG4308	478	consensus LRR-containing protein [Function unknown	97.58
KOG4308	478	consensus LRR-containing protein [Function unknown	97.49
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.3
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.88
KOG4341	483	consensus F-box protein containing LRR [General fu	96.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.24
smart00370	26	LRR Leucine-rich repeats, outliers.	89.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.04
smart00370	26	LRR Leucine-rich repeats, outliers.	88.21
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.21
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.36

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.2e-26  Score=267.24  Aligned_cols=228  Identities=33%  Similarity=0.446  Sum_probs=168.6

Q ss_pred             CCCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~  283 (516)
                      .++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            356777777777776 56677777888888888888765 56777778888888888888776 5667777788888888


Q ss_pred             eeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC
Q 010182          284 VSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      +++|.+. .+|..++.+++|++|++++|.++......+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            8888776 56777777888888888888776443344456778888888888775 566677777788888888887765


Q ss_pred             -cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCH
Q 010182          362 -LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       362 -l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                       +|..+..+++|+.|++++|.+. ..+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+....+
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccC-CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence             6777777788888888877654 455667777788888888888776 466777777888888888887764433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=6.9e-28  Score=244.06  Aligned_cols=274  Identities=29%  Similarity=0.380  Sum_probs=218.1

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      ..|+.|||++|+++.+|..+...+++-+|+||+|+|..||. -|.++..|-+|||++|.+..+|+-+..+.+|++|.|++
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence            67899999999999999999999999999999999999986 45788889999999999999999888899999999988


Q ss_pred             CCCC--------------------------CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc
Q 010182          287 NKLS--------------------------ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP  340 (516)
Q Consensus       287 n~l~--------------------------~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~  340 (516)
                      |.+.                          .+|.++..+.+|..+|++.|.+..+|.+++. +++|+.|+|++|+|+.+.
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~-l~~LrrLNLS~N~iteL~  261 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK-LRNLRRLNLSGNKITELN  261 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh-hhhhheeccCcCceeeee
Confidence            8543                          3455666677788888888888888887774 888888888888888776


Q ss_pred             chhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcc
Q 010182          341 TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL  420 (516)
Q Consensus       341 ~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L  420 (516)
                      ...+.-.+|++|++|.|+++.+|+++.++++|+.|.+.+|.+...++|..++.+..|+.+..++|.+.-+|+.+..|..|
T Consensus       262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL  341 (1255)
T KOG0444|consen  262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKL  341 (1255)
T ss_pred             ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHH
Confidence            66666777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCC-----
Q 010182          421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE-----  495 (516)
Q Consensus       421 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N-----  495 (516)
                      +.|.|+.|.+-..|..+                    .-.+.++.||+..|.---.++-..-..+.+.|.++...     
T Consensus       342 ~kL~L~~NrLiTLPeaI--------------------HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~Ql  401 (1255)
T KOG0444|consen  342 QKLKLDHNRLITLPEAI--------------------HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQL  401 (1255)
T ss_pred             HHhcccccceeechhhh--------------------hhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHH
Confidence            88888888887666543                    23456788999999654444322223356777766543     


Q ss_pred             ccccccC
Q 010182          496 NVSGILG  502 (516)
Q Consensus       496 ~ls~~~~  502 (516)
                      ++.|..|
T Consensus       402 rlAG~~p  408 (1255)
T KOG0444|consen  402 RLAGQMP  408 (1255)
T ss_pred             hhccCCc
Confidence            5666444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=6e-26  Score=261.44  Aligned_cols=294  Identities=24%  Similarity=0.308  Sum_probs=199.4

Q ss_pred             CCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++
T Consensus       164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            67888888888876 67778888888888888888877 56788888888888888888887 67777888888888888


Q ss_pred             eCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC-
Q 010182          285 SGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-  361 (516)
Q Consensus       285 s~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~-  361 (516)
                      ++|.+. .+|..+..+++|+.|++++|.+.......+..+.+|+.|++++|.+. .+|..+..+++|++|++++|.+++ 
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~  323 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK  323 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence            888876 56777888888888888888876433333345788888888888776 556677777888888888887765 


Q ss_pred             cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          362 LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       362 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                      +|..+..+++|+.|++++|.+. ..+|..++.+++|+.|++++|+++ .+|..+..+++|+.|++++|.+....+..+..
T Consensus       324 ~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        324 IPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             CChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence            5667777788888888877654 456677777777777777777776 34566666666666666666665443333221


Q ss_pred             hhHHHHHHHhhh-----hhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          441 GVGAVKTFMAKR-----WLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       441 ~~~~~~~~~~~~-----~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                      ........+..+     ....+...+.++.+++++|++++..+...+..++++.|++++|+++|..+
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence            110000001111     11122334455566666666666555555555555555555555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-26  Score=234.03  Aligned_cols=291  Identities=23%  Similarity=0.273  Sum_probs=141.1

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~  286 (516)
                      +|+.+.+..|.++.+|.......+|+.|+|.+|.|.++ ...++.++.|+.|||+.|.|+.++. .|..-.++++|+|++
T Consensus       103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~  182 (873)
T KOG4194|consen  103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS  182 (873)
T ss_pred             cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence            34444444444444443222233344444444444433 2234444444444444444444432 333334455555555


Q ss_pred             CCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch
Q 010182          287 NKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      |+|+.+ ...|.++.+|..|.|+.|.++.+|...|+.+++|+.|+|..|.|+.+ -..|..+.+|+.|.|..|.+..+.+
T Consensus       183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D  262 (873)
T KOG4194|consen  183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD  262 (873)
T ss_pred             ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC
Confidence            555444 22344444555555555555555555554455555555555554433 1233444444444444444444322


Q ss_pred             -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182          365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV  442 (516)
Q Consensus       365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  442 (516)
                       .|..+.++++|+|..|.+... -..++-+++.|+.|+|+.|.|..+. +....+++|+.|+|++|.|+..+...+..--
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             cceeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence             344555566666666643311 1235556666666666666666663 5666666667777777666666665554333


Q ss_pred             HHHHHHHhhhhhhHh-----HHHhhhcccccccccCCCCCC---CCccccccccEEEccCCccccc
Q 010182          443 GAVKTFMAKRWLDIL-----LEEERRSMLKLEGNNNEGEQM---PTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       443 ~~~~~~~~~~~l~~~-----~~~~~l~~l~L~~N~i~~~~~---~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      +.-...+..+-++.+     ....++..|||++|.+..+.-   .++..+++|+.|.+.||++..+
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            333333444444443     233555566666666555422   1222344555666666655544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=4.9e-27  Score=236.67  Aligned_cols=295  Identities=26%  Similarity=0.277  Sum_probs=192.7

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L  284 (516)
                      .+++.|+|.+|.|+.+.. .++.++.|+.||||.|.|+.++. .|..-.++++|+|++|.|+.+.. .|..+.+|.+|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            456777777777765533 46666677777777777776643 55555667777777777776543 5666667777777


Q ss_pred             eCCCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc
Q 010182          285 SGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL  362 (516)
Q Consensus       285 s~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l  362 (516)
                      +.|+|+.+|. .|.++++|+.|+|..|.|..+....|.++++|+.|.+..|+|..+.. .|..+.++++|+|..|+++.+
T Consensus       205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            7777776654 34447777777777777666655566667777777777776665543 345566667777777766664


Q ss_pred             c-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          363 P-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       363 ~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                      . .++.+++.|+.|+|+.|.|.-. -+..++..++|++|+|++|+|+.++ ..|..+..|++|+|++|.+..+....|..
T Consensus       285 n~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  285 NEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hcccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            3 2556666677777777655422 2345566666777777777777665 56666666777777777666555544442


Q ss_pred             hhHHHHHHHhhhhhhHh--------HHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182          441 GVGAVKTFMAKRWLDIL--------LEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       441 ~~~~~~~~~~~~~l~~~--------~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~  503 (516)
                      .-..-+.-+..+-+.|.        ...+.++.|+|.+|++....--++.....|+.||+.+|.|..+-+.
T Consensus       364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n  434 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN  434 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence            22222222333333322        3457788999999999998888888899999999999999887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=6.1e-27  Score=237.24  Aligned_cols=289  Identities=22%  Similarity=0.373  Sum_probs=237.5

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCC--CcchhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE--TLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls  285 (516)
                      +.++.|.|...++..+|+.++.+.+|+.|.+++|++.++...++.++.|+.++++.|++.  .+|..+..+..|++||||
T Consensus        32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence            678999999999999999999999999999999999999889999999999999999888  789988899999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-ch
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PA  364 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~  364 (516)
                      +|+++.+|..+..-+++..|+|++|+|..+|...+.++..|-.|+|++|++..+|+-+..+..|++|+|++|.+..+ -.
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr  191 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR  191 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987663 13


Q ss_pred             hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHH
Q 010182          365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGA  444 (516)
Q Consensus       365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  444 (516)
                      .+..+++|++|.+++..-+...+|.++..+.+|..+|++.|.+..+|+.+-.+++|+.|+|++|.|+.....+-.  ...
T Consensus       192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~--W~~  269 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGE--WEN  269 (1255)
T ss_pred             cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHH--Hhh
Confidence            455677889999999877778899999999999999999999999999999999999999999999876543311  011


Q ss_pred             H-HHHHhhhhhhHh----HHHhhhcccccccccCCCCCCCCcc-ccccccEEEccCCccc
Q 010182          445 V-KTFMAKRWLDIL----LEEERRSMLKLEGNNNEGEQMPTGW-LTRSTSWLKTVGENVS  498 (516)
Q Consensus       445 ~-~~~~~~~~l~~~----~~~~~l~~l~L~~N~i~~~~~~~~~-~~~~l~~l~l~~N~ls  498 (516)
                      + ...++.+.+..+    ....+++.|.+.+|+++...+|+.. ....+..+..++|++-
T Consensus       270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence            1 111222322222    3345556666666666666555443 2344555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=2e-27  Score=230.23  Aligned_cols=239  Identities=36%  Similarity=0.564  Sum_probs=202.8

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ..++.++.++|+++.+|+.+..+..|+.|++++|.+..++++++.+..|..|+..+|++..+|+++..+.+|..|++.+|
T Consensus        91 ~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n  170 (565)
T KOG0472|consen   91 EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN  170 (565)
T ss_pred             HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc
Confidence            34667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      ++..+|+..-.++.|++||...|-++.+|..++. +.+|..|++..|+|..+| .|..|..|++|.++.|++..+|....
T Consensus       171 ~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~-l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~  248 (565)
T KOG0472|consen  171 KLKALPENHIAMKRLKHLDCNSNLLETLPPELGG-LESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHL  248 (565)
T ss_pred             chhhCCHHHHHHHHHHhcccchhhhhcCChhhcc-hhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHh
Confidence            8888877766688888888888888888888774 888888899999998887 78888888999999998888877554


Q ss_pred             -CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182          368 -KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK  446 (516)
Q Consensus       368 -~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~  446 (516)
                       +++++.+|||.+|  .+..+|..+.-+.+|++||+++|.|+.+|..++++ +|+.|-+.||++..+...++..|.+.+-
T Consensus       249 ~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL  325 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL  325 (565)
T ss_pred             cccccceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence             8899999999999  56788999999999999999999999999999999 9999999999999888888888877766


Q ss_pred             HHHhh
Q 010182          447 TFMAK  451 (516)
Q Consensus       447 ~~~~~  451 (516)
                      .|+..
T Consensus       326 KyLrs  330 (565)
T KOG0472|consen  326 KYLRS  330 (565)
T ss_pred             HHHHH
Confidence            66554

>PLN03210 Resistant to P

Probab=99.91  E-value=5.1e-23  Score=238.78  Aligned_cols=346  Identities=21%  Similarity=0.257  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHhhH-HHHhhhhhhhhcccCccchhHHHHHHHHhHHHHHH
Q 010182           61 KLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDS-ELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALR  139 (516)
Q Consensus        61 e~~aam~~~~~~v~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~el~~~l~~~~~~~~~  139 (516)
                      +++|+.++.. +..+|+.+++++...++..+..+.+.+|+.+.. +++..|.++|++....++.. ...++..... .. 
T Consensus       393 ~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~-~~-  468 (1153)
T PLN03210        393 NVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDL-DV-  468 (1153)
T ss_pred             HHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCC-Cc-
Confidence            4455555543 578999999999999999999999999999975 58899999999877665532 2222221110 00 


Q ss_pred             HHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHhHHhhC-CCccEEE
Q 010182          140 EDSAKEKNACKKILEL----DDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAG-KSLEQVD  214 (516)
Q Consensus       140 ~~~~~~~~~~~~l~~~----~~~h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~L~~L~  214 (516)
                       ...-..-.-+++++.    -+||+++++|+++++.        ..+ .+++++.+.|..+++..++....+ ..++.+.
T Consensus       469 -~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~--------~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~  538 (1153)
T PLN03210        469 -NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVR--------AQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGIT  538 (1153)
T ss_pred             -hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHH--------hhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence             000111122233322    3599999999999972        222 456678889999999988876654 3455555


Q ss_pred             eecCCCCc--c-hHhhcCCCCCcEEEeecCCCC-------CcchhhcCCC-CccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182          215 LSSRGLRF--L-PEAFGRIAGLRLMSLSNNHLE-------VIPDSIAGLV-NLEELNLASNLLETLPDSIGLLDNLKILD  283 (516)
Q Consensus       215 L~~~~l~~--l-~~~~~~l~~L~~L~Ls~n~l~-------~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~  283 (516)
                      +.-..+..  + +.+|..|++|+.|.+..+...       .+|..+..++ +|+.|.+.++.++.+|..+ ...+|+.|+
T Consensus       539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~  617 (1153)
T PLN03210        539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQ  617 (1153)
T ss_pred             eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEE
Confidence            54444442  2 457999999999999776432       4677777765 6999999999999999877 578999999


Q ss_pred             eeCCCCCCCCcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCC-CCccccchhcCCCCCcEEEccCC-CCC
Q 010182          284 VSGNKLSALPDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLN-KIRFLPTSIGEMASLRHLDAHFN-ELH  360 (516)
Q Consensus       284 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~  360 (516)
                      +++|.+..++.++..+++|+.|++++|. +..+|.  +..+++|+.|++++| .+..+|..+.++++|+.|++++| .++
T Consensus       618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~  695 (1153)
T PLN03210        618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE  695 (1153)
T ss_pred             CcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence            9999999999999999999999999875 677775  345899999999987 57789999999999999999986 577


Q ss_pred             CcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCC
Q 010182          361 GLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP  429 (516)
Q Consensus       361 ~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~  429 (516)
                      .+|..+ ++++|+.|++++|. ....+|.   ...+|+.|++++|.|+.+|..+ .+++|+.|++.++.
T Consensus       696 ~Lp~~i-~l~sL~~L~Lsgc~-~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~  758 (1153)
T PLN03210        696 ILPTGI-NLKSLYRLNLSGCS-RLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMK  758 (1153)
T ss_pred             ccCCcC-CCCCCCEEeCCCCC-Ccccccc---ccCCcCeeecCCCccccccccc-cccccccccccccc
Confidence            788765 78999999999984 2344443   2468999999999999998654 56777777777643

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=6.9e-26  Score=219.59  Aligned_cols=267  Identities=34%  Similarity=0.493  Sum_probs=231.2

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ..+..+++++|.+..+...+.++..|++|++++|++..+|.+++.+..++.|+.++|++..+|..++.+.+|..|+.+.|
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n  124 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN  124 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence            34677889999998888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .+..++++++.+-.|..++..+|+++.+|..++. +.+|..+++.+|++..+|+..-.++.|++||...|-++.+|..++
T Consensus       125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg  203 (565)
T KOG0472|consen  125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVN-LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG  203 (565)
T ss_pred             ceeecCchHHHHhhhhhhhccccccccCchHHHH-HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence            9999999999999999999999999999988874 888999999999999998887779999999999999999999999


Q ss_pred             CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182          368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK  446 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~  446 (516)
                      .+.+|..|+|..|  .+..+| .|.++..|.+|+++.|+|..+| +..+++++|.+|||..|+++..|.+++.       
T Consensus       204 ~l~~L~~LyL~~N--ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl-------  273 (565)
T KOG0472|consen  204 GLESLELLYLRRN--KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL-------  273 (565)
T ss_pred             chhhhHHHHhhhc--ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-------
Confidence            9999999999999  456777 7889999999999999999998 5556899999999999999988877643       


Q ss_pred             HHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                                   ...+..+|+++|.|++.+..-...  .+.+|-+.||.+..+
T Consensus       274 -------------LrsL~rLDlSNN~is~Lp~sLgnl--hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  274 -------------LRSLERLDLSNNDISSLPYSLGNL--HLKFLALEGNPLRTI  312 (565)
T ss_pred             -------------hhhhhhhcccCCccccCCcccccc--eeeehhhcCCchHHH
Confidence                         345677999999999875544433  688899999977654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=8e-22  Score=214.47  Aligned_cols=254  Identities=24%  Similarity=0.255  Sum_probs=149.9

Q ss_pred             HHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC
Q 010182          198 VMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD  277 (516)
Q Consensus       198 ~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~  277 (516)
                      +...+..+....-..|+|+++.++.+|..+.  ++|+.|++++|+++.+|..   +++|++|++++|+|+.+|..   .+
T Consensus       191 a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~  262 (788)
T PRK15387        191 VVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PP  262 (788)
T ss_pred             HHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---cc
Confidence            4444445544555667777777777766554  3677777777777766542   45677777777777766542   24


Q ss_pred             CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhc-------------
Q 010182          278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG-------------  344 (516)
Q Consensus       278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~-------------  344 (516)
                      +|+.|++++|.++.+|...   .+|+.|++++|+++.+|..    .++|+.|++++|.+..+|....             
T Consensus       263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~  335 (788)
T PRK15387        263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT  335 (788)
T ss_pred             ccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc----ccccceeECCCCccccCCCCcccccccccccCccc
Confidence            5555555555555544321   3344445555554444431    2344455555444444332110             


Q ss_pred             ----CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcc
Q 010182          345 ----EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL  420 (516)
Q Consensus       345 ----~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L  420 (516)
                          ...+|++|++++|+++.+|..   ..+|+.|++++|.+  ..+|..   ..+|+.|++++|+|+.+|..   .++|
T Consensus       336 ~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L--~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L  404 (788)
T PRK15387        336 SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL--TSLPAL---PSGLKELIVSGNRLTSLPVL---PSEL  404 (788)
T ss_pred             cccccccccceEecCCCccCCCCCC---Ccccceehhhcccc--ccCccc---ccccceEEecCCcccCCCCc---ccCC
Confidence                113566666666666665542   23556666666643  344432   24577777777777777643   2567


Q ss_pred             cEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       421 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      +.|++++|.|+.+|..                       ...+..+++++|+|+. .+..+.....+..+++++|.|+|.
T Consensus       405 ~~LdLS~N~LssIP~l-----------------------~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        405 KELMVSGNRLTSLPML-----------------------PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CEEEccCCcCCCCCcc-----------------------hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence            7777777777765531                       1235668999999984 344566778899999999999987


Q ss_pred             c
Q 010182          501 L  501 (516)
Q Consensus       501 ~  501 (516)
                      .
T Consensus       461 ~  461 (788)
T PRK15387        461 T  461 (788)
T ss_pred             H
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.87  E-value=1.2e-21  Score=214.25  Aligned_cols=262  Identities=25%  Similarity=0.397  Sum_probs=205.6

Q ss_pred             ccHHHHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhh
Q 010182          194 VNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI  273 (516)
Q Consensus       194 ~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l  273 (516)
                      ..+++...+..+...+...|++++++++.+|..+.  ++|+.|++++|.++.+|..+.  .+|++|++++|.++.+|..+
T Consensus       164 ~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l  239 (754)
T PRK15370        164 NREEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL  239 (754)
T ss_pred             cHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh
Confidence            34455556667766788899999999999987654  689999999999999987664  58999999999999998765


Q ss_pred             cCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEE
Q 010182          274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD  353 (516)
Q Consensus       274 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~  353 (516)
                      .  .+|+.|+|++|.+..+|..+.  .+|+.|++++|+++.+|..+.   .+|+.|++++|+++.+|..+.  .+|+.|+
T Consensus       240 ~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~  310 (754)
T PRK15370        240 P--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLN  310 (754)
T ss_pred             h--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHH
Confidence            3  479999999999999987764  589999999999998887543   589999999999998876553  4789999


Q ss_pred             ccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182          354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       354 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      +++|.++.+|..+.  ++|+.|++++|.  +..+|..+.  ++|+.|++++|+|+.+|..+.  ++|+.|+|++|.|+.+
T Consensus       311 Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~--Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        311 VQSNSLTALPETLP--PGLKTLEAGENA--LTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNL  382 (754)
T ss_pred             hcCCccccCCcccc--ccceeccccCCc--cccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCC
Confidence            99999999876553  689999999995  456776553  689999999999999987663  6899999999999987


Q ss_pred             CHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCC--CCc-cccccccEEEccCCccc
Q 010182          434 PVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQM--PTG-WLTRSTSWLKTVGENVS  498 (516)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~--~~~-~~~~~l~~l~l~~N~ls  498 (516)
                      |..+.                      ..++.+++++|+++..+.  +.+ ...+.+..+++.+|.++
T Consensus       383 P~~l~----------------------~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP----------------------AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH----------------------HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            76432                      135567777777774321  111 12245667777777764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.85  E-value=1.2e-22  Score=215.16  Aligned_cols=106  Identities=23%  Similarity=0.302  Sum_probs=74.7

Q ss_pred             hhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhH---HHhhhcc
Q 010182          390 TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILL---EEERRSM  465 (516)
Q Consensus       390 ~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~  465 (516)
                      .+.+..+|+.|+|++|++..+| ..+.+++.|+.|+|+||+++.++..+...+ ..-......|.+..++   ..+.++.
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ahsN~l~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAHSNQLLSFPELAQLPQLKV  456 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhcCCceeechhhhhcCcceE
Confidence            3455678888888888888888 677888888888888888888885554322 2222233344444443   3456777


Q ss_pred             cccccccCCCCCCCCccccccccEEEccCCc
Q 010182          466 LKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN  496 (516)
Q Consensus       466 l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~  496 (516)
                      +|++.|+++....+.....+.|.+||++||.
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            8888888888877776666788889888885

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.7e-20  Score=203.68  Aligned_cols=233  Identities=27%  Similarity=0.407  Sum_probs=188.7

Q ss_pred             hCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          206 AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      ..+.++.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|+|++|.+..+|..+.  .+|+.|+++
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF  270 (754)
T ss_pred             cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence            34679999999999999998664  689999999999999987664  489999999999999988664  589999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT  365 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~  365 (516)
                      +|+++.+|..+.  .+|+.|++++|+++.+|..+.   .+|+.|++++|.+..+|..+.  ++|+.|++++|.++.+|..
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~  343 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP---SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPAS  343 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCccccCcccch---hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChh
Confidence            999999987664  589999999999998886543   478999999999998876553  6899999999999999876


Q ss_pred             hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182          366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV  445 (516)
Q Consensus       366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  445 (516)
                      +.  ++|+.|++++|.+  ..+|..+  .++|+.|+|++|+++.+|..+.  ..|+.|++++|.|..+|..+...     
T Consensus       344 l~--~sL~~L~Ls~N~L--~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~-----  410 (754)
T PRK15370        344 LP--PELQVLDVSKNQI--TVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHF-----  410 (754)
T ss_pred             hc--CcccEEECCCCCC--CcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHH-----
Confidence            64  7899999999954  4577655  3689999999999999987664  37999999999998776532110     


Q ss_pred             HHHHhhhhhhHhHHHhhhcccccccccCCC
Q 010182          446 KTFMAKRWLDILLEEERRSMLKLEGNNNEG  475 (516)
Q Consensus       446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~  475 (516)
                                 ....+.+..+++.+|.++.
T Consensus       411 -----------~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        411 -----------RGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             -----------hhcCCCccEEEeeCCCccH
Confidence                       0122445667777777664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=3.9e-19  Score=193.56  Aligned_cols=211  Identities=32%  Similarity=0.368  Sum_probs=127.0

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhc------------
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIG------------  274 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~------------  274 (516)
                      ..+++.|++.+|+++.+|.   ..++|++|++++|+++.+|..   .++|+.|++++|.++.+|..+.            
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L  294 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL  294 (788)
T ss_pred             hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence            3567778888887777764   246777777777777766532   2344444444444443332110            


Q ss_pred             -----CCCCCcEEEeeCCCCCCCCccccc-----------------CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182          275 -----LLDNLKILDVSGNKLSALPDSISH-----------------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP  332 (516)
Q Consensus       275 -----~l~~L~~L~Ls~n~l~~l~~~l~~-----------------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  332 (516)
                           ..++|+.|++++|+++.+|.....                 ..+|+.|++++|+|+.+|..    ..+|+.|+++
T Consensus       295 t~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls  370 (788)
T PRK15387        295 TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAY  370 (788)
T ss_pred             ccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC----Ccccceehhh
Confidence                 124566666666666555431110                 01334444444444433321    2234444444


Q ss_pred             CCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchh
Q 010182          333 LNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN  412 (516)
Q Consensus       333 ~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~  412 (516)
                      +|.+..+|..   ..+|+.|++++|.++.+|..   .++|+.|++++|.+  ..+|..   +.+|+.|++++|+|+.+|.
T Consensus       371 ~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L--ssIP~l---~~~L~~L~Ls~NqLt~LP~  439 (788)
T PRK15387        371 NNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL--TSLPML---PSGLLSLSVYRNQLTRLPE  439 (788)
T ss_pred             ccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC--CCCCcc---hhhhhhhhhccCcccccCh
Confidence            4444444322   23577777777777776653   35688888888844  456643   3467889999999999998


Q ss_pred             hhcCCCcccEEecccCCCCCCCHHHH
Q 010182          413 TFGRLDKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       413 ~l~~l~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      .+..+++|+.|+|++|+|++..+..+
T Consensus       440 sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        440 SLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             HHhhccCCCeEECCCCCCCchHHHHH
Confidence            89999999999999999987655544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.78  E-value=5.3e-21  Score=166.10  Aligned_cols=200  Identities=39%  Similarity=0.592  Sum_probs=153.1

Q ss_pred             hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEe
Q 010182          227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELD  306 (516)
Q Consensus       227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~  306 (516)
                      +..+.+++.|.+++|+++.+|+.+..+.+|+.|++++|+|+.+|..++.+++|+.|+++-|++..+|.+|+.++.|+.||
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            45678888899999999999999999999999999999999999999999999999999999988899999888888888


Q ss_pred             CCCCCCC--cCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCC
Q 010182          307 ASFNRLA--YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM  384 (516)
Q Consensus       307 L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~  384 (516)
                      +++|++.  .+|.++|                        .++.|+.|.+++|.+.-+|..++++++|+.|.+..|  .+
T Consensus       109 ltynnl~e~~lpgnff------------------------~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dl  162 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFF------------------------YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DL  162 (264)
T ss_pred             ccccccccccCCcchh------------------------HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--ch
Confidence            8888775  3444444                        445555555666666666666666777777777777  55


Q ss_pred             CCcchhhcCCCCccEEeccCCCCCCchhhhcCCC---cccEEecccCCCCCCCHHHHhchhHHHHHHHhhh
Q 010182          385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLD---KLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKR  452 (516)
Q Consensus       385 ~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~---~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~  452 (516)
                      ..+|..++.++.|++|++.+|+++.+|..++.+.   +=+...+.+|++.....+-+.-|...+..++...
T Consensus       163 l~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirte  233 (264)
T KOG0617|consen  163 LSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTE  233 (264)
T ss_pred             hhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhh
Confidence            6777777788888888888888888876665543   3356777888887776666666777766665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=7.8e-21  Score=201.46  Aligned_cols=221  Identities=32%  Similarity=0.457  Sum_probs=114.3

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .++++++++++.++.+|++++.+.+|+.++..+|.+..+|..+....+|+.|.+.+|.+..+|.....++.|++|+|..|
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            45666666666666666666666777777777776666666666666666666666666666666666666666666666


Q ss_pred             CCCCCCccccc--CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCCcch
Q 010182          288 KLSALPDSISH--CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       288 ~l~~l~~~l~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      .|..+|+.+..  ..+|..|+.+.|.+..++..-......|+.|++.+|.++ ..-+.+.+..+|+.|+|++|++..+|.
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence            66655543221  111333333333333333222222333444444444444 111233444445555555555444443


Q ss_pred             -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182          365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                       .+.++..|+.|+|+||  .+..+|..+..+..|++|...+|+|..+| .+..++.|+.+|++.|.|+
T Consensus       401 s~~~kle~LeeL~LSGN--kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGN--KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             HHHhchHHhHHHhcccc--hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence             3344444455555555  23344444444444444444444444444 3444444445555444443

>PLN03210 Resistant to P

Probab=99.77  E-value=8.4e-18  Score=195.41  Aligned_cols=212  Identities=27%  Similarity=0.418  Sum_probs=147.8

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC-CCCCcchhhcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN-LLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      ..|+.|++.++.++.+|..| ...+|+.|++++|.+..++.++..+++|++|+|++| .++.+|. ++.+++|++|++++
T Consensus       589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            46888888888888888776 468888899998888888888888888999999876 4667764 67788889999888


Q ss_pred             C-CCCCCCcccccCCCCcEEeCCCC-CCCcCChhhhhcCCCCcEEecCCCC-CccccchhcCCCCCcEEEccCCCCCCcc
Q 010182          287 N-KLSALPDSISHCRSLVELDASFN-RLAYLPTNIGHELVNLQKLLVPLNK-IRFLPTSIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n-~l~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      | .+..+|..+..+++|+.|++++| .++.+|..+  ++.+|+.|++++|. +..+|..   ..+|++|++++|.++.+|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence            7 56678888888888888888886 467777654  47778888887774 3344432   346677777777766665


Q ss_pred             hhhC------------------------------CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC-CCCCchh
Q 010182          364 ATIG------------------------------KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN-QIHALPN  412 (516)
Q Consensus       364 ~~l~------------------------------~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp~  412 (516)
                      ..+.                              .+++|+.|++++|.. ...+|..++++++|+.|+|++| .++.+|.
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-LVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-ccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence            4321                              123455555655532 2445666666666777776665 4555654


Q ss_pred             hhcCCCcccEEecccC
Q 010182          413 TFGRLDKLIKLNLEEN  428 (516)
Q Consensus       413 ~l~~l~~L~~L~L~~N  428 (516)
                      .+ .+++|+.|++++|
T Consensus       821 ~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        821 GI-NLESLESLDLSGC  835 (1153)
T ss_pred             CC-CccccCEEECCCC
Confidence            43 4566666666665

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=1.7e-20  Score=182.20  Aligned_cols=233  Identities=24%  Similarity=0.331  Sum_probs=139.5

Q ss_pred             hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeC-CCCCCcch-hhcCCCCCcE
Q 010182          206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLAS-NLLETLPD-SIGLLDNLKI  281 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~-n~l~~l~~-~l~~l~~L~~  281 (516)
                      .....+.++|..|+|+.+|+ +|+.+++|+.|+|++|+|+.| |++|.+++.|..|-+.+ |+|+.+|. .|+++..|+.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr  144 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR  144 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence            34556677777777777765 577777777888888777776 67777777777665555 77777775 6677777777


Q ss_pred             EEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-------------cccchhcCCC
Q 010182          282 LDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-------------FLPTSIGEMA  347 (516)
Q Consensus       282 L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------~l~~~l~~l~  347 (516)
                      |.+.-|++.-+ .+.+..+++|..|.+..|.+..++...+..+.+++.+.+..|.+-             ..+..++...
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            77777777755 345667777777777777777777766666777777776666521             0111111111


Q ss_pred             CCcEEEccCCCCCC--------------------------cc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEE
Q 010182          348 SLRHLDAHFNELHG--------------------------LP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKEL  400 (516)
Q Consensus       348 ~L~~L~Ls~n~l~~--------------------------l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L  400 (516)
                      ...-..+.+.++..                          .| ..+..+++|++|+|++|.++.. -+.+|.+...+++|
T Consensus       225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-hhhhhcchhhhhhh
Confidence            11111111111111                          11 1455556666666666654422 24455566666666


Q ss_pred             eccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          401 DLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       401 ~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      .|..|+|..+. ..|.++..|+.|+|.+|+|+...+..|.
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            66666665554 4555566666666666666555444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2.9e-20  Score=161.58  Aligned_cols=160  Identities=33%  Similarity=0.518  Sum_probs=150.7

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .+++.|.|++|.++.+|..+..+.+|++|++++|+|+.+|..++.+++|+.|++.-|.+..+|..|+.++.|+.|||.+|
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182          288 KLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT  365 (516)
Q Consensus       288 ~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~  365 (516)
                      .+.  .+|..|..++.|+.|+++.|.+..+|..++. +++|+.|.+..|.+-++|..++.++.|++|.+.+|+++-+|..
T Consensus       113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~-lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGK-LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhh-hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence            988  6899999999999999999999999999885 9999999999999999999999999999999999999988776


Q ss_pred             hCC
Q 010182          366 IGK  368 (516)
Q Consensus       366 l~~  368 (516)
                      +++
T Consensus       192 l~~  194 (264)
T KOG0617|consen  192 LAN  194 (264)
T ss_pred             hhh
Confidence            554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=8.7e-18  Score=168.95  Aligned_cols=233  Identities=24%  Similarity=0.253  Sum_probs=178.4

Q ss_pred             CCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCC-------cchhhcCCCCccEEEeeCCCCC-Ccchhhc
Q 010182          208 KSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEV-------IPDSIAGLVNLEELNLASNLLE-TLPDSIG  274 (516)
Q Consensus       208 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~-------l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~  274 (516)
                      ..++.|+++++.++     .++..+...++|+.|+++++.+..       ++..+..+++|++|++++|.+. ..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            44999999999985     456677788889999999987763       3456778899999999999987 3444444


Q ss_pred             CCC---CCcEEEeeCCCCCC-----CCcccccC-CCCcEEeCCCCCCCcCC----hhhhhcCCCCcEEecCCCCCc----
Q 010182          275 LLD---NLKILDVSGNKLSA-----LPDSISHC-RSLVELDASFNRLAYLP----TNIGHELVNLQKLLVPLNKIR----  337 (516)
Q Consensus       275 ~l~---~L~~L~Ls~n~l~~-----l~~~l~~l-~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~----  337 (516)
                      .+.   +|++|++++|.++.     +...+..+ ++|+.|++++|.++...    ...+..+.+|++|++++|.++    
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            444   49999999998872     33455666 89999999999987311    122345778999999999987    


Q ss_pred             -cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcchhhcC----CCCccEEeccCCCC
Q 010182          338 -FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELPETFGE----LTNLKELDLSNNQI  407 (516)
Q Consensus       338 -~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~----l~~L~~L~L~~n~i  407 (516)
                       .++..+..+++|++|++++|.+++     +...+..+++|++|++++|.+....+......    .+.|++|++++|.+
T Consensus       183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence             344556677899999999999875     45567788999999999997654333222222    47999999999999


Q ss_pred             C-----CchhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          408 H-----ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       408 ~-----~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                      +     .+...+..+++|+.+++++|.++..+...+.+
T Consensus       263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            7     34567778899999999999999776655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=5.5e-18  Score=170.43  Aligned_cols=270  Identities=23%  Similarity=0.224  Sum_probs=181.3

Q ss_pred             EEEeecCCCC--cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCC-------cchhhcCCC
Q 010182          212 QVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLET-------LPDSIGLLD  277 (516)
Q Consensus       212 ~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-------l~~~l~~l~  277 (516)
                      .|+|..+.++  .....+..+.+|+.|+++++.++     .++..+...++|++|+++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4667777665  44455677788999999999985     456677788889999999988773       234567788


Q ss_pred             CCcEEEeeCCCCCC-CCcccccCC---CCcEEeCCCCCCCcCChh----hhhcC-CCCcEEecCCCCCc-----cccchh
Q 010182          278 NLKILDVSGNKLSA-LPDSISHCR---SLVELDASFNRLAYLPTN----IGHEL-VNLQKLLVPLNKIR-----FLPTSI  343 (516)
Q Consensus       278 ~L~~L~Ls~n~l~~-l~~~l~~l~---~L~~L~L~~n~l~~l~~~----~~~~l-~~L~~L~L~~n~l~-----~l~~~l  343 (516)
                      +|+.|++++|.+.. .+..+..+.   +|++|++++|.++.....    ....+ ++|+.|++++|.++     .+...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            99999999998863 333444444   499999999987631111    12234 78899999988877     344456


Q ss_pred             cCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCch-hhh
Q 010182          344 GEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHALP-NTF  414 (516)
Q Consensus       344 ~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~lp-~~l  414 (516)
                      ..+++|++|++++|.+++     ++..+..+++|+.|++++|.+....   +...+..+++|++|++++|.+++.. ..+
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            677788899998888874     4445666778899999888654222   3345667788899999988888531 111


Q ss_pred             -c----CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC----cccc-
Q 010182          415 -G----RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT----GWLT-  484 (516)
Q Consensus       415 -~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~----~~~~-  484 (516)
                       .    ..+.|+.|++++|.+++.+...+...               +...++++.+++++|+++......    .-.. 
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~---------------~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~  306 (319)
T cd00116         242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEV---------------LAEKESLLELDLRGNKFGEEGAQLLAESLLEPG  306 (319)
T ss_pred             HHHHhccCCCceEEEccCCCCCcHHHHHHHHH---------------HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcC
Confidence             1    24788889998888875433322211               123356778888888888652211    1111 


Q ss_pred             ccccEEEccCCc
Q 010182          485 RSTSWLKTVGEN  496 (516)
Q Consensus       485 ~~l~~l~l~~N~  496 (516)
                      +.+..+++.+|.
T Consensus       307 ~~~~~~~~~~~~  318 (319)
T cd00116         307 NELESLWVKDDS  318 (319)
T ss_pred             CchhhcccCCCC
Confidence            355666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-18  Score=169.68  Aligned_cols=268  Identities=23%  Similarity=0.244  Sum_probs=198.0

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC-C
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG-N  287 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~-n  287 (516)
                      ..++.++.+++.+|..+.  +..+.++|..|+|+.||+ +|+.+++|+.|||++|.|+.| |++|.++.+|..|-+-+ |
T Consensus        49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            457888889999987654  667889999999999965 899999999999999999977 56899999988887766 8


Q ss_pred             CCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC---c
Q 010182          288 KLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG---L  362 (516)
Q Consensus       288 ~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~---l  362 (516)
                      +|+.+|. .|.++.+|+-|.+.-|.+..+....+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+..   +
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            9999975 47779999999999999999999999999999999999999998887 77888889999888776321   1


Q ss_pred             ----------chhhCCCCCCcEEEcccC------------------------CCCCCCcc-hhhcCCCCccEEeccCCCC
Q 010182          363 ----------PATIGKLTNLEILNVSSN------------------------FTDMKELP-ETFGELTNLKELDLSNNQI  407 (516)
Q Consensus       363 ----------~~~l~~l~~L~~L~L~~n------------------------~~~~~~l~-~~l~~l~~L~~L~L~~n~i  407 (516)
                                +..++......-..+...                        ...+...| ..|..+++|+.|+|++|+|
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence                      111121111111111111                        11111112 2345566666666666666


Q ss_pred             CCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcccccc
Q 010182          408 HALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRS  486 (516)
Q Consensus       408 ~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~  486 (516)
                      +.+. .+|.....+++|.|..|+|..+...+|                   .....++.|+|.+|+|+...+-++-...+
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f-------------------~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMF-------------------QGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhh-------------------hccccceeeeecCCeeEEEecccccccce
Confidence            6653 566666666666666666654433332                   24567888999999999998888888889


Q ss_pred             ccEEEccCCcccc
Q 010182          487 TSWLKTVGENVSG  499 (516)
Q Consensus       487 l~~l~l~~N~ls~  499 (516)
                      ++.+++-+|.+-.
T Consensus       348 l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  348 LSTLNLLSNPFNC  360 (498)
T ss_pred             eeeeehccCcccC
Confidence            9999999997654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.55  E-value=1.2e-16  Score=161.97  Aligned_cols=211  Identities=36%  Similarity=0.589  Sum_probs=143.0

Q ss_pred             EEEeecCCCCcchHhh--cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCC
Q 010182          212 QVDLSSRGLRFLPEAF--GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL  289 (516)
Q Consensus       212 ~L~L~~~~l~~l~~~~--~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l  289 (516)
                      +|.|++..++.+|..-  ..+..-...+++.|.+..+|..+..+..|+.|.|..|.+..+|..+.++..|++|||+.|++
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence            3555565555554311  12233344555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCC
Q 010182          290 SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKL  369 (516)
Q Consensus       290 ~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l  369 (516)
                      +.+|..++.                         --|+.|-+++|+++.+|..++....|..||.+.|.+..+|..++.+
T Consensus       134 S~lp~~lC~-------------------------lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l  188 (722)
T KOG0532|consen  134 SHLPDGLCD-------------------------LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL  188 (722)
T ss_pred             hcCChhhhc-------------------------CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence            444444433                         3355566666666666666666677888888888888888888888


Q ss_pred             CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHH
Q 010182          370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFM  449 (516)
Q Consensus       370 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~  449 (516)
                      .+|+.|++..|  ....+|..+..+ .|..||++.|+|+.+|-.|.++..|++|-|.+|+|..+|..++.+|.-++..|+
T Consensus       189 ~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  189 TSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL  265 (722)
T ss_pred             HHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence            88888888888  556778877754 588999999999999999999999999999999999999999988876665554


Q ss_pred             h
Q 010182          450 A  450 (516)
Q Consensus       450 ~  450 (516)
                      .
T Consensus       266 ~  266 (722)
T KOG0532|consen  266 S  266 (722)
T ss_pred             c
Confidence            4

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.50  E-value=1.5e-14  Score=139.39  Aligned_cols=226  Identities=22%  Similarity=0.249  Sum_probs=179.7

Q ss_pred             hCCCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCC----Ccc-------hhhcCCCCccEEEeeCCCCC--
Q 010182          206 AGKSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLE----VIP-------DSIAGLVNLEELNLASNLLE--  267 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~----~l~-------~~l~~l~~L~~L~Ls~n~l~--  267 (516)
                      ....++.++|++|.+.     .+.+.+.+.++|+..++++-..+    .+|       .++..+++|++|+||.|-+.  
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3478999999999986     56667888899999999876433    333       45667889999999999887  


Q ss_pred             C---cchhhcCCCCCcEEEeeCCCCCCC--------------CcccccCCCCcEEeCCCCCCCcCCh----hhhhcCCCC
Q 010182          268 T---LPDSIGLLDNLKILDVSGNKLSAL--------------PDSISHCRSLVELDASFNRLAYLPT----NIGHELVNL  326 (516)
Q Consensus       268 ~---l~~~l~~l~~L~~L~Ls~n~l~~l--------------~~~l~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L  326 (516)
                      .   +...+.++..|++|.|.+|.+...              .....+-++|+.+....|.+..-+.    ..+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            2   233567789999999999988722              2234567889999999999875543    345567899


Q ss_pred             cEEecCCCCCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcch---hh-c
Q 010182          327 QKLLVPLNKIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELPE---TF-G  392 (516)
Q Consensus       327 ~~L~L~~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~---~l-~  392 (516)
                      +.+.+..|.|.     .+..++..+++|+.|||.+|.++.     +...++.+++|+.|++++|.+...+.-.   .+ .
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            99999999887     345678999999999999999987     6678899999999999999776555322   22 3


Q ss_pred             CCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccCCCC
Q 010182          393 ELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       393 ~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                      ..++|+.|.+.+|.|+.     +..++...+.|..|+|++|.++
T Consensus       268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            47899999999999982     3456777999999999999995

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.47  E-value=7.3e-14  Score=144.99  Aligned_cols=201  Identities=37%  Similarity=0.535  Sum_probs=163.9

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC-CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD-NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~  313 (516)
                      .+.+..+.+..-...+..++.++.|++.+|.++.++.....+. +|+.|++++|.+..++..+..+++|+.|++++|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5777777775444555666788889999998888888776674 899999999988888778888899999999999988


Q ss_pred             cCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcC
Q 010182          314 YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE  393 (516)
Q Consensus       314 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~  393 (516)
                      .++.... ..++|+.|++++|++..+|..+..+..|++|.+++|.+..++..+.++.++..+.+.+|.  ...++..++.
T Consensus       177 ~l~~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--~~~~~~~~~~  253 (394)
T COG4886         177 DLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--LEDLPESIGN  253 (394)
T ss_pred             hhhhhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--eeeccchhcc
Confidence            8887654 378899999999999988887777777999999999777777788888888888888884  3444677888


Q ss_pred             CCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          394 LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       394 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      +++++.|++++|.++.++. ++.+.+|+.|++++|.+...+.....
T Consensus       254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence            8889999999999999876 88889999999999998877655544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.43  E-value=5e-15  Score=150.37  Aligned_cols=193  Identities=33%  Similarity=0.446  Sum_probs=169.5

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK  288 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~  288 (516)
                      .....|++.|.+..+|..++.+..|..+.|..|.+..+|..+.++..|++|+|+.|+++.+|..+..++ |+.|-+++|+
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            345689999999999999999999999999999999999999999999999999999999999876554 9999999999


Q ss_pred             CCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCC
Q 010182          289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK  368 (516)
Q Consensus       289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~  368 (516)
                      ++.+|..++...+|..|+.+.|.+..++..... +.+|+.|.+..|.+..+|..+..+ .|..||+++|++..+|-.+.+
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~-l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~  232 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY-LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRK  232 (722)
T ss_pred             cccCCcccccchhHHHhhhhhhhhhhchHHhhh-HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence            999999999999999999999999999998875 999999999999999999988844 589999999999999999999


Q ss_pred             CCCCcEEEcccCCCCCCCcchhhc---CCCCccEEeccCCC
Q 010182          369 LTNLEILNVSSNFTDMKELPETFG---ELTNLKELDLSNNQ  406 (516)
Q Consensus       369 l~~L~~L~L~~n~~~~~~l~~~l~---~l~~L~~L~L~~n~  406 (516)
                      ++.|++|-|.+|.+.  .=|..++   ...-.++|+..-|+
T Consensus       233 m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  233 MRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhheeeeeccCCCC--CChHHHHhccceeeeeeecchhcc
Confidence            999999999999543  3333332   22235778877774

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.43  E-value=1.2e-13  Score=143.27  Aligned_cols=197  Identities=38%  Similarity=0.505  Sum_probs=168.1

Q ss_pred             EEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCC-CccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCC
Q 010182          212 QVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLV-NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS  290 (516)
Q Consensus       212 ~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~  290 (516)
                      .+++..+.+......+..++.++.|++.+|.++.++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5778888775444555666889999999999999988777774 999999999999999878889999999999999999


Q ss_pred             CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCC
Q 010182          291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLT  370 (516)
Q Consensus       291 ~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~  370 (516)
                      .++...+..+.|+.|++++|++..++.... ....|++|.+++|.+...+..+..+.++..|.+.+|++..++..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            998877788999999999999999988753 2566999999999877777888889999999999999988888899999


Q ss_pred             CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchh
Q 010182          371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN  412 (516)
Q Consensus       371 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~  412 (516)
                      ++++|++++|.+  ..++. ++.+.+++.|++++|.+..++.
T Consensus       256 ~l~~L~~s~n~i--~~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         256 NLETLDLSNNQI--SSISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccceeccccccc--ccccc-ccccCccCEEeccCccccccch
Confidence            999999999954  45544 8888999999999999886653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.42  E-value=3.1e-14  Score=137.17  Aligned_cols=249  Identities=21%  Similarity=0.230  Sum_probs=153.9

Q ss_pred             HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC----Ccch-------hhcCCCCCcEEEeeCCC
Q 010182          225 EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE----TLPD-------SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       225 ~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~----~l~~-------~l~~l~~L~~L~Ls~n~  288 (516)
                      +....+..++.++|++|.++     .+...+...++|+..++++-...    .+|.       ++-..++|++||||+|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            34566788999999999988     45677888889999999875332    4443       33455689999999987


Q ss_pred             CC-----CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC--
Q 010182          289 LS-----ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG--  361 (516)
Q Consensus       289 l~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~--  361 (516)
                      +.     .+-.-+.++..|++|.|.+|.+.........  ..|..|.        ....+.+.+.|+++..+.|++..  
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--------VNKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--------HHhccCCCcceEEEEeecccccccc
Confidence            76     1223456688888888888887644333211  0111111        01123344566777777776655  


Q ss_pred             ---cchhhCCCCCCcEEEcccCCCCCCCc---chhhcCCCCccEEeccCCCCC-----CchhhhcCCCcccEEecccCCC
Q 010182          362 ---LPATIGKLTNLEILNVSSNFTDMKEL---PETFGELTNLKELDLSNNQIH-----ALPNTFGRLDKLIKLNLEENPM  430 (516)
Q Consensus       362 ---l~~~l~~l~~L~~L~L~~n~~~~~~l---~~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~N~l  430 (516)
                         +...+...+.|+.+.+..|.|...++   ...+..+++|+.|||..|-++     .+...+..+++|+.|++++|.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence               33455666677777777775554443   234556677777777777666     2345666677777777777777


Q ss_pred             CCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC----ccccccccEEEccCCcc
Q 010182          431 VIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT----GWLTRSTSWLKTVGENV  497 (516)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~----~~~~~~l~~l~l~~N~l  497 (516)
                      ..-+...+...+..              ..+.+.++++.+|.|+......    ....+.+..|++++|++
T Consensus       254 ~~~Ga~a~~~al~~--------------~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  254 ENEGAIAFVDALKE--------------SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccHHHHHHHHhc--------------cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            76665554433221              2456677777777766543221    12245566777777777

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.41  E-value=7.7e-13  Score=147.56  Aligned_cols=256  Identities=21%  Similarity=0.192  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHhhcCCC-----C--ChhhHHHHHHHHHHhhHHHHhhhhhhhhcccCccchhHHH--HHHHHhHH----
Q 010182           69 AIHDVYQTRSVLQTLGPR-----P--DHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEW--RVQLADKE----  135 (516)
Q Consensus        69 ~~~~v~~~~~~l~~~~~~-----p--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~el~--~~l~~~~~----  135 (516)
                      ....+.||+.+...+...     +  ...+..+..++|+.+..+.+..|..+|.++...+|+.+-.  .|+.+.--    
T Consensus       368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~  447 (889)
T KOG4658|consen  368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLD  447 (889)
T ss_pred             CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccc
Confidence            333588999999988765     2  3355689999999999889999999999998887766543  33332200    


Q ss_pred             -HHHHHHHHH---HHHHHhhhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHh
Q 010182          136 -KALREDSAK---EKNACKKILELD---------DMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLL  202 (516)
Q Consensus       136 -~~~~~~~~~---~~~~~~~l~~~~---------~~h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l  202 (516)
                       .+.-+....   +.-..+++....         .|||.+.+|.-.+...+.+-.   ++   .....+..    .....
T Consensus       448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~---e~---~iv~~~~~----~~~~~  517 (889)
T KOG4658|consen  448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE---EN---QIVSDGVG----LSEIP  517 (889)
T ss_pred             cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc---cc---eEEECCcC----ccccc
Confidence             001011110   111112232222         388888888766653221100   00   00000000    00000


Q ss_pred             HHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCC--CCCcch-hhcCCCCccEEEeeCC-CCCCcchhhcCCCC
Q 010182          203 QEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNH--LEVIPD-SIAGLVNLEELNLASN-LLETLPDSIGLLDN  278 (516)
Q Consensus       203 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~--l~~l~~-~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~  278 (516)
                      +......++...+.++.+..++.... ++.|++|-+..|.  +..++. .|..++.|+.|||++| .+..+|..++.+-+
T Consensus       518 ~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  518 QVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             cccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            01112456777777777776655433 3478888888775  555543 3677888888888876 66788888888888


Q ss_pred             CcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182          279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK  335 (516)
Q Consensus       279 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  335 (516)
                      |++|+++++.+..+|.++.++.+|.+|++..+.-......+...+.+|++|.+....
T Consensus       597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            888888888888888888888888888888776433334445457777777775544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=6e-14  Score=138.65  Aligned_cols=201  Identities=27%  Similarity=0.269  Sum_probs=89.6

Q ss_pred             CCccEEEeecCCCCcch--HhhcCCCCCcEEEeecCCCCC---cchhhcCCCCccEEEeeCCCCCCcchh--hcCCCCCc
Q 010182          208 KSLEQVDLSSRGLRFLP--EAFGRIAGLRLMSLSNNHLEV---IPDSIAGLVNLEELNLASNLLETLPDS--IGLLDNLK  280 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~Ls~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~~l~~~--l~~l~~L~  280 (516)
                      +.|+.+.|.++.+...+  .....|++++.|||+.|-+..   +......+|+|+.|+++.|.+.....+  -..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            44555555555554443  234455555666666554442   223334555555555555555432211  11344555


Q ss_pred             EEEeeCCCCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCC
Q 010182          281 ILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE  358 (516)
Q Consensus       281 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~  358 (516)
                      .|.|+.|.++  .+-..+..+++|+.|+|.+|.                       .+.........++.|++|||++|.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-----------------------~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-----------------------IILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-----------------------ccceecchhhhhhHHhhccccCCc
Confidence            5555555554  121222334455555555552                       111111122223344445555544


Q ss_pred             CCCcc--hhhCCCCCCcEEEcccCCCCCCCcchh-----hcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCC
Q 010182          359 LHGLP--ATIGKLTNLEILNVSSNFTDMKELPET-----FGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENP  429 (516)
Q Consensus       359 l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~-----l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~  429 (516)
                      +.+++  ...+.++.|+.|+++.|.+.....|+.     ...+++|+.|++..|+|.+++  ..+..+++|+.|.+..|.
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            44433  233444455555555443332222222     223445555555555554443  333444555555555555


Q ss_pred             CC
Q 010182          430 MV  431 (516)
Q Consensus       430 l~  431 (516)
                      +.
T Consensus       338 ln  339 (505)
T KOG3207|consen  338 LN  339 (505)
T ss_pred             cc
Confidence            44

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.34  E-value=4.1e-13  Score=126.80  Aligned_cols=201  Identities=27%  Similarity=0.294  Sum_probs=134.5

Q ss_pred             hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC--CCC--CCCcccccCCCC
Q 010182          227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN--KLS--ALPDSISHCRSL  302 (516)
Q Consensus       227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~--~l~~~l~~l~~L  302 (516)
                      +.-+++|..+.++.+.-..+-+....-|.|+++...+..+...|..+ ....+  -|.++-  ...  .+-..+...+.|
T Consensus       210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~L  286 (490)
T KOG1259|consen  210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETIL--ADPSGSEPSTSNGSALVSADTWQEL  286 (490)
T ss_pred             hHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc-chhhh--cCccCCCCCccCCceEEecchHhhh
Confidence            34455666666666654444333333456666666655554332210 11111  111111  000  011122335568


Q ss_pred             cEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCC
Q 010182          303 VELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT  382 (516)
Q Consensus       303 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~  382 (516)
                      +++||++|.|+.+...+- -.+.++.|+++.|+|..+. .+..+.+|+.|||++|.++.+..+-.++-++++|.|++|.+
T Consensus       287 telDLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVK-LAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             hhccccccchhhhhhhhh-hccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhH
Confidence            889999999888877655 3788999999999988773 48888899999999999888777777888899999999943


Q ss_pred             CCCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCCCCCCCH
Q 010182          383 DMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       383 ~~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                        ..+ ..++.+-+|..||+++|+|..+.  ..++++|.|+.|.|.+|++...+.
T Consensus       365 --E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  365 --ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             --hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence              343 35667778999999999998775  678899999999999999987653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.30  E-value=1.7e-12  Score=117.45  Aligned_cols=125  Identities=33%  Similarity=0.456  Sum_probs=39.5

Q ss_pred             CCCCccEEEeeCCCCCCcchhhc-CCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEe
Q 010182          252 GLVNLEELNLASNLLETLPDSIG-LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL  330 (516)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~l~~~l~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  330 (516)
                      +..++++|+|++|.|+.+. .++ .+.+|+.|++++|.|+.+ +++..++.|++|++++|.|+.+...+...+++|+.|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3345566666666666553 233 355666666666666666 3455666666666666666666544433466666666


Q ss_pred             cCCCCCcccc--chhcCCCCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcc
Q 010182          331 VPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLP----ATIGKLTNLEILNVS  378 (516)
Q Consensus       331 L~~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~  378 (516)
                      +++|+|..+.  ..+..+++|++|++.+|.++.-+    ..+..+++|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6666665432  24455666777777776665522    244556666666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=5.2e-13  Score=126.11  Aligned_cols=200  Identities=21%  Similarity=0.197  Sum_probs=124.1

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCC--CcchhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE--TLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls  285 (516)
                      .+|..+.++++.-+.+-.....-+.|.++.+.+..+...|. +-....+.-+....-...  .+-..+.....|++|||+
T Consensus       214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS  292 (490)
T KOG1259|consen  214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS  292 (490)
T ss_pred             hhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence            34555555555433332222222566677766665543221 111111111111111111  111123345667788888


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT  365 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~  365 (516)
                      +|.|+.+..++.-.+.++.|+++.|.|..+..  ...+++|+.||+++|.+..+...-..+.+.++|.|++|.+.++ +.
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SG  369 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SG  369 (490)
T ss_pred             ccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hh
Confidence            88887777777777788888888888776655  2347788888888887776655555667788888888887776 45


Q ss_pred             hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182          366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      +.++-+|..|++++|.|.--+--..+++++.|+.|.|.+|.+..++
T Consensus       370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            6777788888888886643333456888999999999999888765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=3.4e-12  Score=115.56  Aligned_cols=126  Identities=24%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh-CCCCCCcEEEc
Q 010182          299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNV  377 (516)
Q Consensus       299 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~L  377 (516)
                      +.++++|+|.+|.|+.+.. ....+.+|+.|++++|.|+.+ +.+..++.|++|++++|.|+++...+ ..+++|+.|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S---TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            3445555555555554432 222245555555555555555 24555666777777777777665433 34667777777


Q ss_pred             ccCCCCCCCcchhhcCCCCccEEeccCCCCCCch----hhhcCCCcccEEecc
Q 010182          378 SSNFTDMKELPETFGELTNLKELDLSNNQIHALP----NTFGRLDKLIKLNLE  426 (516)
Q Consensus       378 ~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp----~~l~~l~~L~~L~L~  426 (516)
                      ++|.+..-.--..+..+++|+.|+|.+|.++..+    ..+..+|+|+.||-.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            7776543222345667777888888888777543    456778888887543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.4e-13  Score=130.31  Aligned_cols=177  Identities=22%  Similarity=0.228  Sum_probs=125.6

Q ss_pred             CCCccEEEeecCCCCc---chHhhcCCCCCcEEEeecCCCCCcchh--hcCCCCccEEEeeCCCCC--CcchhhcCCCCC
Q 010182          207 GKSLEQVDLSSRGLRF---LPEAFGRIAGLRLMSLSNNHLEVIPDS--IAGLVNLEELNLASNLLE--TLPDSIGLLDNL  279 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~Ls~n~l~~l~~~--l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L  279 (516)
                      +++++.|||++|-+..   +......+++|+.|+++.|.+....++  -..+++|+.|.|+.|.++  ++-..+..+++|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            3889999999998763   344567899999999999988744222  235789999999999999  443445678999


Q ss_pred             cEEEeeCCC-CCCCCcccccCCCCcEEeCCCCCCCcCChh-hhhcCCCCcEEecCCCCCccc--cch-----hcCCCCCc
Q 010182          280 KILDVSGNK-LSALPDSISHCRSLVELDASFNRLAYLPTN-IGHELVNLQKLLVPLNKIRFL--PTS-----IGEMASLR  350 (516)
Q Consensus       280 ~~L~Ls~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~l--~~~-----l~~l~~L~  350 (516)
                      +.|+|..|. +..-......++.|++|+|++|++-..+.. ....++.|..|+++.|++.++  |..     .....+|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~  304 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE  304 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence            999999995 322223344578899999999998766632 223488888888888888754  222     24456777


Q ss_pred             EEEccCCCCCCcch--hhCCCCCCcEEEcccCCCC
Q 010182          351 HLDAHFNELHGLPA--TIGKLTNLEILNVSSNFTD  383 (516)
Q Consensus       351 ~L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~~~  383 (516)
                      +|++..|++.+.++  .+..+.+|+.|.+..|.+.
T Consensus       305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             eeecccCccccccccchhhccchhhhhhccccccc
Confidence            77777777766433  4555566666666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.14  E-value=3.7e-12  Score=132.92  Aligned_cols=220  Identities=30%  Similarity=0.379  Sum_probs=142.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .++..|++.+|.|+.+...+..+++|++|++++|.|+.+ .++..++.|+.|++++|.|+.+.. +..+..|+.+++++|
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYN  172 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-CccchhhhcccCCcc
Confidence            567777777777776655466677777777777777766 345566667777777777776643 445777777777777


Q ss_pred             CCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCC--CcEEEccCCCCCCcch
Q 010182          288 KLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMAS--LRHLDAHFNELHGLPA  364 (516)
Q Consensus       288 ~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~--L~~L~Ls~n~l~~l~~  364 (516)
                      .+..+... +..+.+++.+++.+|.+..+.....  +..+..+++..|.+..+ ..+..+..  |+.+++++|.+..++.
T Consensus       173 ~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~--~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~n~i~~~~~  249 (414)
T KOG0531|consen  173 RIVDIENDELSELISLEELDLGGNSIREIEGLDL--LKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSGNRISRSPE  249 (414)
T ss_pred             hhhhhhhhhhhhccchHHHhccCCchhcccchHH--HHHHHHhhcccccceec-cCcccchhHHHHHHhcccCccccccc
Confidence            77766432 4566777777777777665443222  34444446666666654 22333333  7788888888887766


Q ss_pred             hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc---h--hhhcCCCcccEEecccCCCCCCCH
Q 010182          365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL---P--NTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l---p--~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      .+..+..+..|++.+|.+.  .+ ..+.....+..+....+.+...   .  ......+++..+.+.+|++.....
T Consensus       250 ~~~~~~~l~~l~~~~n~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  250 GLENLKNLPVLDLSSNRIS--NL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccccccccchhhcccc--cc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            6777788888888887543  21 2244556667777777766521   1  225667888888899888876543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.07  E-value=9.6e-12  Score=129.81  Aligned_cols=217  Identities=30%  Similarity=0.420  Sum_probs=140.8

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ..++.+++..|.+...-..+..+++|..|++.+|.|..+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence            345555667777666444566777888888888888877555677788888888888888774 3556677888888888


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .|..+ ..+..+..|+.+++++|.+..+.......+.+++.+++.+|.+..+ ..+..+..+..+++..|.++.+-. +.
T Consensus       151 ~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~-l~  227 (414)
T KOG0531|consen  151 LISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG-LN  227 (414)
T ss_pred             cchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC-cc
Confidence            87776 4555577788888888877766651023477777777877777755 334444455555667776666421 22


Q ss_pred             CCC--CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182          368 KLT--NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       368 ~l~--~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                      .+.  .|+.+++++|.+  ..++..+..+..+..|++.+|++..+. .+...+.+..+....|++.
T Consensus       228 ~~~~~~L~~l~l~~n~i--~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  228 ELVMLHLRELYLSGNRI--SRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cchhHHHHHHhcccCcc--ccccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence            222  267777777743  333244556677777777777776553 3445556666666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.93  E-value=9.4e-10  Score=123.10  Aligned_cols=229  Identities=23%  Similarity=0.253  Sum_probs=142.6

Q ss_pred             hCCCccEEEeecCC--CCcchH-hhcCCCCCcEEEeecC-CCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcE
Q 010182          206 AGKSLEQVDLSSRG--LRFLPE-AFGRIAGLRLMSLSNN-HLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKI  281 (516)
Q Consensus       206 ~~~~L~~L~L~~~~--l~~l~~-~~~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~  281 (516)
                      .++.+++|-+.+|.  +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+++++.|+.+|..++++..|.+
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY  622 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence            44679999999886  565554 4888999999999987 6779999999999999999999999999999999999999


Q ss_pred             EEeeCCC-CCCCCcccccCCCCcEEeCCCCCCCcCChhhh---hcCCCCcEEecCCCCCccccchhcCCCCCc----EEE
Q 010182          282 LDVSGNK-LSALPDSISHCRSLVELDASFNRLAYLPTNIG---HELVNLQKLLVPLNKIRFLPTSIGEMASLR----HLD  353 (516)
Q Consensus       282 L~Ls~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~---~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~----~L~  353 (516)
                      ||+..+. +..++.....+++|++|.+...... ......   ..+.+|+.+....... .+...+..+..|.    .+.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~  700 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLS  700 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhh
Confidence            9999885 3445555566999999998766521 111111   2344444444433222 1111122222222    233


Q ss_pred             ccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhc-----C-CCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182          354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFG-----E-LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       354 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~-----~-l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~  427 (516)
                      +.++.....+..+..+.+|+.|.+.++.+....+ .+..     . ++++..+.+.+|..-..+.+....++|+.|.+..
T Consensus       701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~  779 (889)
T KOG4658|consen  701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS  779 (889)
T ss_pred             hcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence            2334444455566677777777777764321111 1110     1 2234444444443333344445566777777777


Q ss_pred             CCCCCCCHHH
Q 010182          428 NPMVIPPVEV  437 (516)
Q Consensus       428 N~l~~~~~~~  437 (516)
                      ++....+...
T Consensus       780 ~~~~e~~i~~  789 (889)
T KOG4658|consen  780 CRLLEDIIPK  789 (889)
T ss_pred             ccccccCCCH
Confidence            7665554433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.88  E-value=1.4e-09  Score=101.98  Aligned_cols=239  Identities=20%  Similarity=0.204  Sum_probs=164.9

Q ss_pred             cHHHHHHhHHh-hCCCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCC----Cc-------chhhcCCCCcc
Q 010182          195 NEEVMGLLQEA-AGKSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLE----VI-------PDSIAGLVNLE  257 (516)
Q Consensus       195 ~~~~~~~l~~~-~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~----~l-------~~~l~~l~~L~  257 (516)
                      .+++..++.+. ....++.++|++|.|.     .+...+.+-.+|+..+++.-..+    .+       ..++.+||+|+
T Consensus        16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            33444443332 2467899999999987     56667777889999999876443    22       34567899999


Q ss_pred             EEEeeCCCCC-Ccc----hhhcCCCCCcEEEeeCCCCCCCCc--------------ccccCCCCcEEeCCCCCCCcCChh
Q 010182          258 ELNLASNLLE-TLP----DSIGLLDNLKILDVSGNKLSALPD--------------SISHCRSLVELDASFNRLAYLPTN  318 (516)
Q Consensus       258 ~L~Ls~n~l~-~l~----~~l~~l~~L~~L~Ls~n~l~~l~~--------------~l~~l~~L~~L~L~~n~l~~l~~~  318 (516)
                      ..+||.|.+. ..|    +.++.-+.|.+|.+++|.+.-+..              ...+-+.|+.+....|++...+..
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~  175 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE  175 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence            9999999887 333    356778899999999998874421              134567888898888888755543


Q ss_pred             h----hhcCCCCcEEecCCCCCccc------cchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCC
Q 010182          319 I----GHELVNLQKLLVPLNKIRFL------PTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTD  383 (516)
Q Consensus       319 ~----~~~l~~L~~L~L~~n~l~~l------~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~  383 (516)
                      .    +..-.+|+.+.+..|.|+.-      ...+..+.+|+.||+..|.++.     +...+..++.|+.|.+..|.++
T Consensus       176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            2    22235788888888888721      2345667888888888888776     4556777788888888888666


Q ss_pred             CCCcchhhc-----CCCCccEEeccCCCCC-----C--chhh-hcCCCcccEEecccCCCCCC
Q 010182          384 MKELPETFG-----ELTNLKELDLSNNQIH-----A--LPNT-FGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       384 ~~~l~~~l~-----~l~~L~~L~L~~n~i~-----~--lp~~-l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ..+....+.     ..++|..|....|.+.     +  ++.. =..+|-|..|-+.+|.|...
T Consensus       256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence            555544333     3467788888877544     1  2211 13567777888888887644

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.73  E-value=3.6e-09  Score=99.23  Aligned_cols=251  Identities=20%  Similarity=0.169  Sum_probs=140.6

Q ss_pred             HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC----Ccc-------hhhcCCCCCcEEEeeCCC
Q 010182          225 EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE----TLP-------DSIGLLDNLKILDVSGNK  288 (516)
Q Consensus       225 ~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~----~l~-------~~l~~l~~L~~L~Ls~n~  288 (516)
                      ..+..+..++.++||+|.|+     .++..+.+-.+|+..+++.-...    .++       .++-++++|++.+||.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34556788999999999887     45667777788888888865433    222       344567888888888887


Q ss_pred             CC-CCC----cccccCCCCcEEeCCCCCCCcCChhhhh-cCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc
Q 010182          289 LS-ALP----DSISHCRSLVELDASFNRLAYLPTNIGH-ELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL  362 (516)
Q Consensus       289 l~-~l~----~~l~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l  362 (516)
                      ++ ..|    +.+++.+.|++|.+++|.+..+...-.. .+..     +..|      ....+-+.|++.+...|++...
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~n------KKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYN------KKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHH------hhhccCCCceEEEeccchhccC
Confidence            66 222    3456677788888888877644322110 0000     0000      1123334566666666655543


Q ss_pred             ch-----hhCCCCCCcEEEcccCCCCCCCcch----hhcCCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccC
Q 010182          363 PA-----TIGKLTNLEILNVSSNFTDMKELPE----TFGELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEEN  428 (516)
Q Consensus       363 ~~-----~l~~l~~L~~L~L~~n~~~~~~l~~----~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N  428 (516)
                      +.     .+..-.+|+++.+..|.|.-.++..    .+..+.+|+.|||..|-++.     +..++...+.|+.|.+..|
T Consensus       173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            22     2233346666666666554333211    12234567777777776662     3355566666777777777


Q ss_pred             CCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc-------cccccEEEccCCcccc
Q 010182          429 PMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL-------TRSTSWLKTVGENVSG  499 (516)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~-------~~~l~~l~l~~N~ls~  499 (516)
                      -++..+...+-..+..             ..++++..|...+|.+.+..+...+.       .+-+..+-+.||+|+.
T Consensus       253 lls~~G~~~v~~~f~e-------------~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         253 LLSNEGVKSVLRRFNE-------------KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhccccHHHHHHHhhh-------------hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            7766655443322221             13455566666666666655444332       2234455566666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.69  E-value=4.6e-10  Score=117.44  Aligned_cols=130  Identities=29%  Similarity=0.407  Sum_probs=91.1

Q ss_pred             CCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEccc
Q 010182          300 RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSS  379 (516)
Q Consensus       300 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~  379 (516)
                      ..|...+.++|.+..+....- -++.|+.|+|+.|++..+. .+..++.|++|||++|.++.+|..-..-..|..|++++
T Consensus       164 n~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            356666677777765544433 3677777777777777663 67777888888888888887766333333488888888


Q ss_pred             CCCCCCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCCCCCCC
Q 010182          380 NFTDMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       380 n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      |.  +..+ ..+.++.+|+.||++.|-|....  ..+..+..|+.|+|.||++..-+
T Consensus       242 N~--l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  242 NA--LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             cH--HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            83  3343 35677888888888888777543  45667788888889998887554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=7.6e-09  Score=98.24  Aligned_cols=220  Identities=20%  Similarity=0.160  Sum_probs=132.8

Q ss_pred             EEEeecCCCCcchH--hh-cCCCCCcEEEeecCCCC---CcchhhcCCCCccEEEeeCCCCCCcchhh-cCCCCCcEEEe
Q 010182          212 QVDLSSRGLRFLPE--AF-GRIAGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLASNLLETLPDSI-GLLDNLKILDV  284 (516)
Q Consensus       212 ~L~L~~~~l~~l~~--~~-~~l~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~L  284 (516)
                      -+.+.++.|.....  .| ..++.++.|+|.+|.|+   .+...+.++|.|++|+++.|++....+.+ ....+|++|-|
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            34445555543322  12 33566777888888777   34445677788888888887766433333 25567788888


Q ss_pred             eCCCCC--CCCcccccCCCCcEEeCCCCCCCcCC--h-hhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccC
Q 010182          285 SGNKLS--ALPDSISHCRSLVELDASFNRLAYLP--T-NIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHF  356 (516)
Q Consensus       285 s~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~--~-~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~  356 (516)
                      .+..+.  ..-..+..++.+++|.++.|++..+-  . +.-..-+.+++|....|...   ....--.-.+++..+.+..
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE  208 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence            777665  33344556777777777777543211  1 11111234555555555432   1111123346777888888


Q ss_pred             CCCCCcc--hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-----h--hhhcCCCcccEEeccc
Q 010182          357 NELHGLP--ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-----P--NTFGRLDKLIKLNLEE  427 (516)
Q Consensus       357 n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-----p--~~l~~l~~L~~L~L~~  427 (516)
                      |.+.+..  ......+.+-.|+|+.|.++.-.--..+..++.|..|.++++.+.+-     +  -.++.+++++.|+=+ 
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs-  287 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS-  287 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc-
Confidence            8777743  24455667778889888765444445677888999999999887631     1  245778888887654 


Q ss_pred             CCCCCC
Q 010182          428 NPMVIP  433 (516)
Q Consensus       428 N~l~~~  433 (516)
                       +|+..
T Consensus       288 -kIss~  292 (418)
T KOG2982|consen  288 -KISSR  292 (418)
T ss_pred             -ccchh
Confidence             56543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=2.2e-09  Score=112.50  Aligned_cols=132  Identities=22%  Similarity=0.250  Sum_probs=103.9

Q ss_pred             CCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEec
Q 010182          323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDL  402 (516)
Q Consensus       323 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L  402 (516)
                      +..|...+.++|.+..+..++.-++.|+.|+|+.|+++.+. .+..+++|++|||+.|.+  ..+|..-..-.+|+.|.|
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L--~~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL--RHVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh--ccccccchhhhhheeeee
Confidence            45678889999999988889988999999999999999985 789999999999999954  555543222335999999


Q ss_pred             cCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182          403 SNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE  476 (516)
Q Consensus       403 ~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~  476 (516)
                      +||.++++- .+.++.+|+.||+++|-|.+...-                  ..+.....|+.|.|.+|.+-+.
T Consensus       240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL------------------~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSEL------------------EPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cccHHHhhh-hHHhhhhhhccchhHhhhhcchhh------------------hHHHHHHHHHHHhhcCCccccC
Confidence            999999885 678899999999999988754332                  2233445566677777776654

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.6e-07  Score=102.84  Aligned_cols=103  Identities=29%  Similarity=0.501  Sum_probs=58.8

Q ss_pred             CcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCC
Q 010182          233 LRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASF  309 (516)
Q Consensus       233 L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~  309 (516)
                      ++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455566666555 44555666666666666666665 55555666666666666666655 4555566666666666666


Q ss_pred             CCCC-cCChhhhhcCCCCcEEecCCCC
Q 010182          310 NRLA-YLPTNIGHELVNLQKLLVPLNK  335 (516)
Q Consensus       310 n~l~-~l~~~~~~~l~~L~~L~L~~n~  335 (516)
                      |.++ .+|..+.....++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            6654 4444433323345556666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.54  E-value=5.3e-08  Score=72.46  Aligned_cols=57  Identities=46%  Similarity=0.675  Sum_probs=24.6

Q ss_pred             CCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182          232 GLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       232 ~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~  288 (516)
                      +|++|++++|++..++ ..|.++++|++|++++|.++.++. .|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444444443 234444444444444444444432 33444444444444443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=4.1e-09  Score=100.04  Aligned_cols=80  Identities=19%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CCcEEEccCCC----CCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch---hhhcCCCcc
Q 010182          348 SLRHLDAHFNE----LHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP---NTFGRLDKL  420 (516)
Q Consensus       348 ~L~~L~Ls~n~----l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp---~~l~~l~~L  420 (516)
                      +|+.|+++|+.    ...+......+++|..|||++|..--.++-..+..++.|++|.++.|..- +|   -.+...|.|
T Consensus       287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcce
Confidence            45555555541    11233334456666666666652111233334455666666666666321 11   134556677


Q ss_pred             cEEecccC
Q 010182          421 IKLNLEEN  428 (516)
Q Consensus       421 ~~L~L~~N  428 (516)
                      .+|++.++
T Consensus       366 ~yLdv~g~  373 (419)
T KOG2120|consen  366 VYLDVFGC  373 (419)
T ss_pred             EEEEeccc
Confidence            77776664

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=2.3e-07  Score=101.58  Aligned_cols=104  Identities=24%  Similarity=0.325  Sum_probs=76.6

Q ss_pred             CccEEEeeCCCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182          255 NLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP  332 (516)
Q Consensus       255 ~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  332 (516)
                      .++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3677888888877 66777888888888888888876 677778888888888888888874333334468888888888


Q ss_pred             CCCCc-cccchhcCC-CCCcEEEccCCC
Q 010182          333 LNKIR-FLPTSIGEM-ASLRHLDAHFNE  358 (516)
Q Consensus       333 ~n~l~-~l~~~l~~l-~~L~~L~Ls~n~  358 (516)
                      +|.+. .+|..+... .++..+++.+|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            88776 667666543 356677777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.50  E-value=8.4e-08  Score=71.37  Aligned_cols=35  Identities=46%  Similarity=0.674  Sum_probs=13.8

Q ss_pred             ccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCC
Q 010182          256 LEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLS  290 (516)
Q Consensus       256 L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~  290 (516)
                      |++|++++|+|+.+|. .|..+++|++|++++|.++
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~   38 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT   38 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC
Confidence            3444444444443332 3333344444444444333

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=6.2e-08  Score=92.16  Aligned_cols=201  Identities=19%  Similarity=0.191  Sum_probs=140.6

Q ss_pred             hCCCccEEEeecCCCC---cchHhhcCCCCCcEEEeecCCCCCcchhh-cCCCCccEEEeeCCCCC--CcchhhcCCCCC
Q 010182          206 AGKSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLE--TLPDSIGLLDNL  279 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L  279 (516)
                      ..+.++.+||.+|.|+   .+...+.+++.|++|+++.|.+...-..+ ....+|+.|-|.++.+.  ..-..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            3478999999999998   45556789999999999999988443333 35679999999999777  444567788999


Q ss_pred             cEEEeeCCCCCCC---Cccccc-CCCCcEEeCCCCCCCcC--ChhhhhcCCCCcEEecCCCCCccc--cchhcCCCCCcE
Q 010182          280 KILDVSGNKLSAL---PDSISH-CRSLVELDASFNRLAYL--PTNIGHELVNLQKLLVPLNKIRFL--PTSIGEMASLRH  351 (516)
Q Consensus       280 ~~L~Ls~n~l~~l---~~~l~~-l~~L~~L~L~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~  351 (516)
                      +.|.++.|.+..+   ...... -+.+++|....|....-  -.....-.+++..+.+..|.+...  ..+....+.+.-
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999999966533   111111 23566666666643210  011223478889999999988754  345556677778


Q ss_pred             EEccCCCCCCcc--hhhCCCCCCcEEEcccCCCCCC-----CcchhhcCCCCccEEeccCCCCC
Q 010182          352 LDAHFNELHGLP--ATIGKLTNLEILNVSSNFTDMK-----ELPETFGELTNLKELDLSNNQIH  408 (516)
Q Consensus       352 L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~-----~l~~~l~~l~~L~~L~L~~n~i~  408 (516)
                      |+|+.|+|.+..  +.+..++.|..|.+++|.+...     ..--.++.+++++.|+  |-+|+
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN--GskIs  290 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN--GSKIS  290 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec--Ccccc
Confidence            999999998843  4788999999999999865421     1112356778888876  44676

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=7.3e-09  Score=98.39  Aligned_cols=215  Identities=20%  Similarity=0.189  Sum_probs=145.9

Q ss_pred             CCccEEEeecCCCC--cchHhhcCC-CCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcE
Q 010182          208 KSLEQVDLSSRGLR--FLPEAFGRI-AGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKI  281 (516)
Q Consensus       208 ~~L~~L~L~~~~l~--~l~~~~~~l-~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~  281 (516)
                      ..+..+.+....+.  .+.+.+.-+ +.|++|||++..|+  .+-..++.+.+|+.|.+.++.+. .+...+....+|+.
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~  238 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR  238 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence            44555655543332  233333323 45899999999888  45566788999999999999998 45567888999999


Q ss_pred             EEeeCC-CCCCC--CcccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCC----ccccchhcCCCCCcEE
Q 010182          282 LDVSGN-KLSAL--PDSISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKI----RFLPTSIGEMASLRHL  352 (516)
Q Consensus       282 L~Ls~n-~l~~l--~~~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l----~~l~~~l~~l~~L~~L  352 (516)
                      |+++.+ .+++.  .--+.+|+.|..|+++-|.+..  +...+..--++|+.|+++++.-    ..+..-...+++|.+|
T Consensus       239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence            999987 45533  2346789999999999998652  2222223356899999988742    2333345778999999


Q ss_pred             EccCC-CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccE
Q 010182          353 DAHFN-ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIK  422 (516)
Q Consensus       353 ~Ls~n-~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~  422 (516)
                      ||++| .++. ....+.+++.|++|.++.|..-+...--.+...+.|.+|++.||-=. ..--....+++|+.
T Consensus       319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            99987 4444 44567789999999999994221111123567789999999998433 22223345566554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=2.2e-08  Score=84.83  Aligned_cols=111  Identities=28%  Similarity=0.350  Sum_probs=77.6

Q ss_pred             ccEEEeecCCCCcchHh---hcCCCCCcEEEeecCCCCCcchhhcC-CCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          210 LEQVDLSSRGLRFLPEA---FGRIAGLRLMSLSNNHLEVIPDSIAG-LVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~---~~~l~~L~~L~Ls~n~l~~l~~~l~~-l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      +-.++|++|.+..+++.   +....+|+..+|++|.+..+|..|.. ++.++.|++++|.|+.+|..+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            34577777777666553   44455666677777777777766643 347777777777777777777777777777777


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhh
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG  320 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~  320 (516)
                      .|.+...|..+..+.+|..|+..+|.+..++...+
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence            77777777777777777777777777766666544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=2e-07  Score=79.02  Aligned_cols=108  Identities=24%  Similarity=0.369  Sum_probs=88.8

Q ss_pred             hCCCccEEEeecCCCCcchHhhc-CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182          206 AGKSLEQVDLSSRGLRFLPEAFG-RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV  284 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  284 (516)
                      .+..|+.++|++|.++.+|+.|. +++.++.|++++|.|..+|..+..++.|+.|+++.|.+...|..+..+.+|-.|+.
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence            45789999999999999998764 45689999999999999999999999999999999999999998888999999999


Q ss_pred             eCCCCCCCCcccccCCCCcEEeCCCCCCC
Q 010182          285 SGNKLSALPDSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       285 s~n~l~~l~~~l~~l~~L~~L~L~~n~l~  313 (516)
                      .+|.+..++..+..-...-...+.++.+.
T Consensus       131 ~~na~~eid~dl~~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  131 PENARAEIDVDLFYSSLPALIKLGNEPLG  159 (177)
T ss_pred             CCCccccCcHHHhccccHHHHHhcCCccc
Confidence            99998888765433233333334444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.33  E-value=1.6e-06  Score=88.21  Aligned_cols=142  Identities=21%  Similarity=0.356  Sum_probs=88.8

Q ss_pred             cccHHHHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecC-CCCCcchhhcCCCCccEEEeeCC-CCCCcc
Q 010182          193 EVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNN-HLEVIPDSIAGLVNLEELNLASN-LLETLP  270 (516)
Q Consensus       193 ~~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~  270 (516)
                      +....+...+..+  ..++.|++++|.++.+|. +  -.+|+.|.+++| .++.+|..+  .++|++|++++| .+..+|
T Consensus        39 e~r~~a~~r~~~~--~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         39 EIRSEITPQIEEA--RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHHHHHHHHHHh--cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence            3444555555554  778899999999888872 2  246999999875 566677655  358899999888 676666


Q ss_pred             hhhcCCCCCcEEEeeCCCCC---CCCcccccCCCCcEEeCCCCC-C--CcCChhhhhcCCCCcEEecCCCCCccccchhc
Q 010182          271 DSIGLLDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNR-L--AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG  344 (516)
Q Consensus       271 ~~l~~l~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~L~~n~-l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~  344 (516)
                      .      +|+.|+++++...   .+|.      +|+.|.+.+++ .  ..++. .  -..+|++|++++|....+|..+.
T Consensus       112 ~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~~LP  176 (426)
T PRK15386        112 E------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNIILPEKLP  176 (426)
T ss_pred             c------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc-c--cCCcccEEEecCCCcccCccccc
Confidence            4      4677777766543   3443      35566664332 1  11111 0  12567788887776655554433


Q ss_pred             CCCCCcEEEccCCC
Q 010182          345 EMASLRHLDAHFNE  358 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~  358 (516)
                        .+|+.|.++.+.
T Consensus       177 --~SLk~L~ls~n~  188 (426)
T PRK15386        177 --ESLQSITLHIEQ  188 (426)
T ss_pred             --ccCcEEEecccc
Confidence              467777776653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.33  E-value=7.2e-07  Score=80.63  Aligned_cols=122  Identities=25%  Similarity=0.335  Sum_probs=77.7

Q ss_pred             cEEEeeCCCCCCcchhhc-CCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182          257 EELNLASNLLETLPDSIG-LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK  335 (516)
Q Consensus       257 ~~L~Ls~n~l~~l~~~l~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  335 (516)
                      +.++|++.++..+.. ++ .+.+...+||++|.+..+ ..+..+..|.+|.+++|.|+.+...+..-+++|..|.+.+|+
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            445555554443322 11 234556666677766655 445566677777777777777776666667777777777777


Q ss_pred             Ccccc--chhcCCCCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcccC
Q 010182          336 IRFLP--TSIGEMASLRHLDAHFNELHGLP----ATIGKLTNLEILNVSSN  380 (516)
Q Consensus       336 l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~~n  380 (516)
                      |..+.  ..+..|+.|++|.+-+|.++.-.    -.+..+++|++||...-
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            66542  34566778888888888777632    25677788888887754

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=8.8e-06  Score=82.80  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=93.8

Q ss_pred             hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC-CCCCcchhhcCCCCCcEEEeeCC-CCCCCCcccccCCCCcE
Q 010182          227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN-LLETLPDSIGLLDNLKILDVSGN-KLSALPDSISHCRSLVE  304 (516)
Q Consensus       227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~  304 (516)
                      +..+.+++.|++++|.++.+|.   -..+|+.|.+++| .++.+|..+  ..+|++|++++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            4456889999999999998872   2347999999885 677777654  368999999998 7777765      4677


Q ss_pred             EeCCCCCCCcCChhhhhcCCCCcEEecCCCC-C--ccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccC
Q 010182          305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNK-I--RFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN  380 (516)
Q Consensus       305 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l--~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n  380 (516)
                      |++.++.+..++..    -++|+.|.+.++. .  ..++.  .-..+|++|++++|....+|..+.  .+|+.|.++.+
T Consensus       117 L~L~~n~~~~L~~L----PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNV----PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccC----cchHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            77777664433211    2356777775432 1  11121  112589999999998776665544  68999999876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.14  E-value=2.9e-06  Score=76.77  Aligned_cols=102  Identities=23%  Similarity=0.342  Sum_probs=57.7

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcC-CCCCcEEEeeCCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGL-LDNLKILDVSGNKL  289 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~-l~~L~~L~Ls~n~l  289 (516)
                      +.++|.+.++..+...-....+...++|++|.+..+ ..|..++.|.+|.|.+|.|+.|.+.+.. +++|+.|.|.+|+|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            345555555443322111123455667777766655 3456666677777777777766554433 45677777777766


Q ss_pred             CCCC--cccccCCCCcEEeCCCCCCC
Q 010182          290 SALP--DSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       290 ~~l~--~~l~~l~~L~~L~L~~n~l~  313 (516)
                      ..+.  ..+..|++|++|.+-+|.++
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchh
Confidence            6442  33455666666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=3.7e-06  Score=57.79  Aligned_cols=39  Identities=51%  Similarity=0.680  Sum_probs=26.5

Q ss_pred             CCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182          395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       395 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ++|++|++++|+|+++|..+..+++|+.|++++|+|+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            357777777777777776677777777777777777654

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=5.4e-06  Score=56.98  Aligned_cols=38  Identities=37%  Similarity=0.605  Sum_probs=16.2

Q ss_pred             CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc
Q 010182          232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL  269 (516)
Q Consensus       232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l  269 (516)
                      +|++|++++|+|+.+|..++++++|++|++++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34444444444444443344444444444444444433

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=1.3e-05  Score=88.03  Aligned_cols=148  Identities=23%  Similarity=0.253  Sum_probs=99.4

Q ss_pred             CCCCcEEEeeCCCCC--CCCccccc-CCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccchhcCCCCCcE
Q 010182          276 LDNLKILDVSGNKLS--ALPDSISH-CRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH  351 (516)
Q Consensus       276 l~~L~~L~Ls~n~l~--~l~~~l~~-l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~  351 (516)
                      -.+|++|+++|...-  .-+..++. +++|+.|.+++-.+..-. .....++++|..||+++++++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            368999999886432  22333443 889999988876654221 23455788999999999999888 78888899998


Q ss_pred             EEccCCCCCCc--chhhCCCCCCcEEEcccCCCCCCC-cc----hhhcCCCCccEEeccCCCCCCc--hhhhcCCCcccE
Q 010182          352 LDAHFNELHGL--PATIGKLTNLEILNVSSNFTDMKE-LP----ETFGELTNLKELDLSNNQIHAL--PNTFGRLDKLIK  422 (516)
Q Consensus       352 L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~~~~~~-l~----~~l~~l~~L~~L~L~~n~i~~l--p~~l~~l~~L~~  422 (516)
                      |.+.+=.+..-  -..+.++++|+.||+|........ +.    +.-..+++|+.||.+++.+..-  -..+..-++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            88887666652  235667889999999887432222 11    1223478888888888877732  244455566665


Q ss_pred             Ee
Q 010182          423 LN  424 (516)
Q Consensus       423 L~  424 (516)
                      +.
T Consensus       280 i~  281 (699)
T KOG3665|consen  280 IA  281 (699)
T ss_pred             hh
Confidence            55

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=1.2e-05  Score=88.18  Aligned_cols=135  Identities=21%  Similarity=0.271  Sum_probs=90.2

Q ss_pred             hHHhhCCCccEEEeecCCCC--cchHh-hcCCCCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCC
Q 010182          202 LQEAAGKSLEQVDLSSRGLR--FLPEA-FGRIAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLL  276 (516)
Q Consensus       202 l~~~~~~~L~~L~L~~~~l~--~l~~~-~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l  276 (516)
                      +.+....+|++||++|...-  .-+.. -..+|+|+.|.+++-.+.  .+..-..++|+|..||+|+++++.+ .+++.+
T Consensus       116 Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  116 LNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             HhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence            34445578888999886532  22333 345688999988887665  3334556788888999999888888 668888


Q ss_pred             CCCcEEEeeCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh------hhhhcCCCCcEEecCCCCCc
Q 010182          277 DNLKILDVSGNKLSALP--DSISHCRSLVELDASFNRLAYLPT------NIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       277 ~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~  337 (516)
                      ++|++|.+.+=.+..-.  ..+.++++|+.||+|.......+.      ..+..+++|+.||.+++.+.
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            88888888776655321  356778888888888776543331      11234666666666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.79  E-value=8.5e-07  Score=88.21  Aligned_cols=226  Identities=17%  Similarity=0.066  Sum_probs=124.7

Q ss_pred             HhhCCCccEEEeecCCC---CcchHhhcCCCCCcEEEeecCC-CCCc-chhh-cCCCCccEEEeeCC-CCCCc--chhhc
Q 010182          204 EAAGKSLEQVDLSSRGL---RFLPEAFGRIAGLRLMSLSNNH-LEVI-PDSI-AGLVNLEELNLASN-LLETL--PDSIG  274 (516)
Q Consensus       204 ~~~~~~L~~L~L~~~~l---~~l~~~~~~l~~L~~L~Ls~n~-l~~l-~~~l-~~l~~L~~L~Ls~n-~l~~l--~~~l~  274 (516)
                      ...+..++.|.+.|+.=   +.+-.....+++++.|.+.++. ++.- ...+ ..+++|++|++..| .|+..  .....
T Consensus       134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            33456788888887652   2444455678888888888874 3321 2222 45778999998885 55532  12334


Q ss_pred             CCCCCcEEEeeCCC-CC--CCCcccccCCCCcEEeCCCCCCCcCCh--hhhhcCCCCcEEecCCC-CCccc--cchhcCC
Q 010182          275 LLDNLKILDVSGNK-LS--ALPDSISHCRSLVELDASFNRLAYLPT--NIGHELVNLQKLLVPLN-KIRFL--PTSIGEM  346 (516)
Q Consensus       275 ~l~~L~~L~Ls~n~-l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n-~l~~l--~~~l~~l  346 (516)
                      .+++|++|++++|. |+  .+-.-..++..++.+.+.+|.=..+..  .+...+.-+..+++..+ .++..  -..-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            67889999998883 33  222234456667777666653111110  11112334455554444 23321  1112345


Q ss_pred             CCCcEEEccCCC-CCC--cchhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCCCCC---CchhhhcCCCc
Q 010182          347 ASLRHLDAHFNE-LHG--LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIH---ALPNTFGRLDK  419 (516)
Q Consensus       347 ~~L~~L~Ls~n~-l~~--l~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n~i~---~lp~~l~~l~~  419 (516)
                      ..|+.|+.+++. +++  +-..-.++.+|+.|-+.++. ++...+...-.+.+.|+.+++.+|...   ++...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            567777776653 333  22223456677777777763 233333222345667777777777443   23333346677


Q ss_pred             ccEEecccCC
Q 010182          420 LIKLNLEENP  429 (516)
Q Consensus       420 L~~L~L~~N~  429 (516)
                      |++|.|+++.
T Consensus       374 lr~lslshce  383 (483)
T KOG4341|consen  374 LRVLSLSHCE  383 (483)
T ss_pred             hccCChhhhh
Confidence            7777777664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.58  E-value=6.2e-07  Score=94.25  Aligned_cols=253  Identities=24%  Similarity=0.220  Sum_probs=125.0

Q ss_pred             CCccEEEeecCCCCc-----chHhhcCC-CCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC-----Ccch
Q 010182          208 KSLEQVDLSSRGLRF-----LPEAFGRI-AGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE-----TLPD  271 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~-----l~~~~~~l-~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~-----~l~~  271 (516)
                      ..+..|++++|.+..     +...+... ..+++|.+..|.++     .+...+....+++.++++.|.+.     .++.
T Consensus       115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~  194 (478)
T KOG4308|consen  115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ  194 (478)
T ss_pred             ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence            556666666666651     11222222 34555666666555     23445555666666666666553     1122


Q ss_pred             hhc----CCCCCcEEEeeCCCCCC-----CCcccccCCC-CcEEeCCCCCCCcC-----ChhhhhcC-CCCcEEecCCCC
Q 010182          272 SIG----LLDNLKILDVSGNKLSA-----LPDSISHCRS-LVELDASFNRLAYL-----PTNIGHEL-VNLQKLLVPLNK  335 (516)
Q Consensus       272 ~l~----~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~-L~~L~L~~n~l~~l-----~~~~~~~l-~~L~~L~L~~n~  335 (516)
                      .+.    ...++++|++++|.++.     +...+...++ +..|++..|.+...     .... ... ..++.+++..|.
T Consensus       195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l-~~~~~~l~~l~l~~ns  273 (478)
T KOG4308|consen  195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCL-SVLSETLRVLDLSRNS  273 (478)
T ss_pred             hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHh-cccchhhhhhhhhcCC
Confidence            222    35566666666666551     1122333344 55566666665532     1111 112 455666666666


Q ss_pred             Cc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc------------------
Q 010182          336 IR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL------------------  387 (516)
Q Consensus       336 l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l------------------  387 (516)
                      |+     .+...+..+..+++|.+++|.+..     +-..+.....+..+.+.++.......                  
T Consensus       274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (478)
T KOG4308|consen  274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELG  353 (478)
T ss_pred             ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHH
Confidence            65     334445555666667776666665     11222233333333333321110000                  


Q ss_pred             --------------chhhcCC-CCccEEeccCCCCC-----CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHH
Q 010182          388 --------------PETFGEL-TNLKELDLSNNQIH-----ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKT  447 (516)
Q Consensus       388 --------------~~~l~~l-~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~  447 (516)
                                    .....+. ..+..+++..+.+.     .++..+...+.+..++++.|...+.....+......   
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~---  430 (478)
T KOG4308|consen  354 ISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR---  430 (478)
T ss_pred             hhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh---
Confidence                          0011111 23555666665544     234455677788888888887766655444432221   


Q ss_pred             HHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182          448 FMAKRWLDILLEEERRSMLKLEGNNNEGE  476 (516)
Q Consensus       448 ~~~~~~l~~~~~~~~l~~l~L~~N~i~~~  476 (516)
                                 .. .+..+.++.|.++..
T Consensus       431 -----------~~-~~~~~~l~~~~~~~~  447 (478)
T KOG4308|consen  431 -----------NG-SLKALRLSRNPITAL  447 (478)
T ss_pred             -----------cc-cchhhhhccChhhhc
Confidence                       12 445566777766644

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.49  E-value=1e-06  Score=92.54  Aligned_cols=90  Identities=30%  Similarity=0.339  Sum_probs=46.3

Q ss_pred             hcCCCC-CcEEEccCCCCCC-----cchhhCCC-CCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCc--
Q 010182          343 IGEMAS-LRHLDAHFNELHG-----LPATIGKL-TNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHAL--  410 (516)
Q Consensus       343 l~~l~~-L~~L~Ls~n~l~~-----l~~~l~~l-~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~l--  410 (516)
                      +...+. +..|++..|.+.+     +...+... ..+++++++.|.+...+   +...+..+..+++|.+++|.++.-  
T Consensus       228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~  307 (478)
T KOG4308|consen  228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV  307 (478)
T ss_pred             HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence            334443 5556666666654     22334444 45666666666554322   233444555666666666666632  


Q ss_pred             ---hhhhcCCCcccEEecccCCCCC
Q 010182          411 ---PNTFGRLDKLIKLNLEENPMVI  432 (516)
Q Consensus       411 ---p~~l~~l~~L~~L~L~~N~l~~  432 (516)
                         -..+.....+..+-+.++....
T Consensus       308 ~~~~~~l~~~~~~~~~~l~~~~~~~  332 (478)
T KOG4308|consen  308 ELLLEALERKTPLLHLVLGGTGKGT  332 (478)
T ss_pred             HHHHHHhhhcccchhhhccccCccc
Confidence               1333444555555555444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.30  E-value=8.3e-05  Score=70.22  Aligned_cols=105  Identities=26%  Similarity=0.253  Sum_probs=66.1

Q ss_pred             cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC--CCC-CcchhhcCCCCCcEEEeeCCCCCCC--CcccccCCCC
Q 010182          228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN--LLE-TLPDSIGLLDNLKILDVSGNKLSAL--PDSISHCRSL  302 (516)
Q Consensus       228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L  302 (516)
                      ..+..|+.|++.+..++.+ ..+..+++|++|.++.|  .+. .++.....+++|++|++++|+|..+  -..+..+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445566666666666655 34566778888888888  433 3433444568888888888887743  1334556777


Q ss_pred             cEEeCCCCCCCcCC---hhhhhcCCCCcEEecCC
Q 010182          303 VELDASFNRLAYLP---TNIGHELVNLQKLLVPL  333 (516)
Q Consensus       303 ~~L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~  333 (516)
                      ..|++.+|..+.+.   ..+|.-+++|++|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            78888887655432   33455566666665443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.26  E-value=0.00015  Score=68.49  Aligned_cols=103  Identities=31%  Similarity=0.320  Sum_probs=59.7

Q ss_pred             CCCCcEEecCCCCCccccchhcCCCCCcEEEccCC--CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccE
Q 010182          323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN--ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE  399 (516)
Q Consensus       323 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~  399 (516)
                      ...|+.|++.+..++++ ..+-.+++|++|.++.|  ++.. ++.....+++|++|++++|.+.+..--..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            33444444444444433 23444567777777777  4333 33344455788888888886653222233456667778


Q ss_pred             EeccCCCCCCch----hhhcCCCcccEEecc
Q 010182          400 LDLSNNQIHALP----NTFGRLDKLIKLNLE  426 (516)
Q Consensus       400 L~L~~n~i~~lp----~~l~~l~~L~~L~L~  426 (516)
                      |++.+|..+.+-    ..+.-+++|++|+-.
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            888888776542    455666777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=3.7e-05  Score=72.97  Aligned_cols=97  Identities=23%  Similarity=0.295  Sum_probs=74.3

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch--hhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD--SIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls  285 (516)
                      .+++.|++.||++..+. ...+|+.|++|.|+-|.|+.+ ..+..|++|++|+|+.|.|.++.+  .+.++++|+.|.|.
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            45778999999988763 356799999999999999988 457889999999999999997754  56788999999988


Q ss_pred             CCCCC--CCC----cccccCCCCcEEe
Q 010182          286 GNKLS--ALP----DSISHCRSLVELD  306 (516)
Q Consensus       286 ~n~l~--~l~----~~l~~l~~L~~L~  306 (516)
                      .|.-.  .-+    ..+.-+++|+.||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            88533  111    2345567777665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=3.1e-05  Score=73.44  Aligned_cols=81  Identities=27%  Similarity=0.284  Sum_probs=52.8

Q ss_pred             CCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhh-hhcCCCCcEEec
Q 010182          253 LVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNI-GHELVNLQKLLV  331 (516)
Q Consensus       253 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L  331 (516)
                      +.+.+.|++.+|.|+.| ..+..++.|++|.|+-|+|+.+ ..+..|++|++|+|..|.|..+.... ..++++|+.|.|
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            44566777777777766 3355677777777777777777 45667777777777777776654432 345566666666


Q ss_pred             CCCC
Q 010182          332 PLNK  335 (516)
Q Consensus       332 ~~n~  335 (516)
                      ..|.
T Consensus        96 ~ENP   99 (388)
T KOG2123|consen   96 DENP   99 (388)
T ss_pred             ccCC
Confidence            5554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.05  E-value=0.0016  Score=55.73  Aligned_cols=102  Identities=20%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCC
Q 010182          226 AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSL  302 (516)
Q Consensus       226 ~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L  302 (516)
                      +|..+.+|+.+.+.. .+..+ ..+|.++.+|+.+.+..+ +..++. .|..+.+|+.+.+.. .+..++ ..+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            355555666666553 34444 234555555666666553 444443 444444555555543 333232 233345555


Q ss_pred             cEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182          303 VELDASFNRLAYLPTNIGHELVNLQKLLVP  332 (516)
Q Consensus       303 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  332 (516)
                      +.+++..+ +..++...+.+. +|+.+.+.
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            55555443 444444444433 44444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.88  E-value=0.0034  Score=53.75  Aligned_cols=82  Identities=20%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCC
Q 010182          249 SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNL  326 (516)
Q Consensus       249 ~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  326 (516)
                      .|.++.+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++...+..+.+|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            445555566665553 3444433 3444445555555443 44332 2334444555555543 3444444444444455


Q ss_pred             cEEecCC
Q 010182          327 QKLLVPL  333 (516)
Q Consensus       327 ~~L~L~~  333 (516)
                      +.+.+..
T Consensus        84 ~~i~~~~   90 (129)
T PF13306_consen   84 KNIDIPS   90 (129)
T ss_dssp             CEEEETT
T ss_pred             cccccCc
Confidence            5554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.65  E-value=0.00017  Score=72.26  Aligned_cols=224  Identities=18%  Similarity=0.099  Sum_probs=114.4

Q ss_pred             hCCCccEEEeecCC-CC--cchHhhcCCCCCcEEEeecC-CCCCc-ch-hhcCCCCccEEEeeCC-CCC--CcchhhcCC
Q 010182          206 AGKSLEQVDLSSRG-LR--FLPEAFGRIAGLRLMSLSNN-HLEVI-PD-SIAGLVNLEELNLASN-LLE--TLPDSIGLL  276 (516)
Q Consensus       206 ~~~~L~~L~L~~~~-l~--~l~~~~~~l~~L~~L~Ls~n-~l~~l-~~-~l~~l~~L~~L~Ls~n-~l~--~l~~~l~~l  276 (516)
                      .+++++.|.+.++. ++  .+-..-..+++|+.|++..| .++.. .. --.++++|++|++++| .|+  .+-....+.
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            45778888777765 22  12222345688888888885 45522 12 2356788888888887 333  222223344


Q ss_pred             CCCcEEEeeCCC---------------------------CCCC--CcccccCCCCcEEeCCCCC-CCcCC-hhhhhcCCC
Q 010182          277 DNLKILDVSGNK---------------------------LSAL--PDSISHCRSLVELDASFNR-LAYLP-TNIGHELVN  325 (516)
Q Consensus       277 ~~L~~L~Ls~n~---------------------------l~~l--~~~l~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~  325 (516)
                      ..++.+.+.||.                           ++..  ...-..+..|+.|+.+++. ++... .....+..+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            445555444442                           1110  0011224455555555543 22111 122334566


Q ss_pred             CcEEecCCCC-Cccc--cchhcCCCCCcEEEccCCCCCC---cchhhCCCCCCcEEEcccCCC-CCCC---cchhhcCCC
Q 010182          326 LQKLLVPLNK-IRFL--PTSIGEMASLRHLDAHFNELHG---LPATIGKLTNLEILNVSSNFT-DMKE---LPETFGELT  395 (516)
Q Consensus       326 L~~L~L~~n~-l~~l--~~~l~~l~~L~~L~Ls~n~l~~---l~~~l~~l~~L~~L~L~~n~~-~~~~---l~~~l~~l~  395 (516)
                      |+.|-+..++ ++..  ..--.++..|+.+++..+....   +.+.-.+++.|+.|.++.+.. .+.+   +...-....
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            6666666664 2211  1111344566666666654332   333334666777777776631 1111   111223455


Q ss_pred             CccEEeccCCCCCC--chhhhcCCCcccEEecccCC
Q 010182          396 NLKELDLSNNQIHA--LPNTFGRLDKLIKLNLEENP  429 (516)
Q Consensus       396 ~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~N~  429 (516)
                      .|+.+.|++|..+.  .-+.+..+++|+.+++-++.
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            67777777775542  22566667777776666553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.34  E-value=0.0014  Score=69.55  Aligned_cols=105  Identities=22%  Similarity=0.199  Sum_probs=49.3

Q ss_pred             CCCccEEEeecCC-CCc--chHhhcCCCCCcEEEeecC--CCCCc----chhhcCCCCccEEEeeCCC-CCCcc-hhh-c
Q 010182          207 GKSLEQVDLSSRG-LRF--LPEAFGRIAGLRLMSLSNN--HLEVI----PDSIAGLVNLEELNLASNL-LETLP-DSI-G  274 (516)
Q Consensus       207 ~~~L~~L~L~~~~-l~~--l~~~~~~l~~L~~L~Ls~n--~l~~l----~~~l~~l~~L~~L~Ls~n~-l~~l~-~~l-~  274 (516)
                      .+.++.+.+.++. +..  +......+++|+.|+++++  .+...    ......+.+|+.|+++++. ++... ..+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            3555666655542 222  3334455566666666652  11111    1222344566666666665 44221 112 2


Q ss_pred             CCCCCcEEEeeCCC-CC--CCCcccccCCCCcEEeCCCCC
Q 010182          275 LLDNLKILDVSGNK-LS--ALPDSISHCRSLVELDASFNR  311 (516)
Q Consensus       275 ~l~~L~~L~Ls~n~-l~--~l~~~l~~l~~L~~L~L~~n~  311 (516)
                      .+++|++|.+.+|. ++  .+......+++|++|++++|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25566666655554 33  222223345556666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.94  E-value=0.002  Score=68.35  Aligned_cols=185  Identities=22%  Similarity=0.190  Sum_probs=92.4

Q ss_pred             hcCCCCCcEEEeecC-CCCC--cchhhcCCCCccEEEeeCC--CCCCcc----hhhcCCCCCcEEEeeCCC-CCCCC-cc
Q 010182          227 FGRIAGLRLMSLSNN-HLEV--IPDSIAGLVNLEELNLASN--LLETLP----DSIGLLDNLKILDVSGNK-LSALP-DS  295 (516)
Q Consensus       227 ~~~l~~L~~L~Ls~n-~l~~--l~~~l~~l~~L~~L~Ls~n--~l~~l~----~~l~~l~~L~~L~Ls~n~-l~~l~-~~  295 (516)
                      ...+++|+.|.+.++ .+..  +-.....+++|+.|+++++  .+...+    .....+.+|+.|+++++. ++... ..
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            334688888888877 4443  4455567788888888873  222111    123345777788887776 44221 11


Q ss_pred             cc-cCCCCcEEeCCCCC-CCcCC-hhhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccCCCCCCcchhhCCC
Q 010182          296 IS-HCRSLVELDASFNR-LAYLP-TNIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHFNELHGLPATIGKL  369 (516)
Q Consensus       296 l~-~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l  369 (516)
                      +. .|++|++|.+.+|. ++... ..+...+++|++|+++++...   .+.....++++|+.|.+....         .+
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c  334 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GC  334 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CC
Confidence            22 26677777766665 43221 122334566677766665432   122223334444444332221         13


Q ss_pred             CCCcEEEcccCCCC--CCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcc
Q 010182          370 TNLEILNVSSNFTD--MKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKL  420 (516)
Q Consensus       370 ~~L~~L~L~~n~~~--~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L  420 (516)
                      ..++.+.+.+....  ..........+++++.+.+..+.++...  ..+..+++|
T Consensus       335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            33444444332111  0112223455666666666666644332  334444444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.00  E-value=0.0082  Score=34.37  Aligned_cols=21  Identities=43%  Similarity=0.797  Sum_probs=14.5

Q ss_pred             CccEEeccCCCCCCchhhhcC
Q 010182          396 NLKELDLSNNQIHALPNTFGR  416 (516)
Q Consensus       396 ~L~~L~L~~n~i~~lp~~l~~  416 (516)
                      +|++|+|++|+|+.+|..|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777755544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.012  Score=33.71  Aligned_cols=10  Identities=40%  Similarity=0.458  Sum_probs=3.6

Q ss_pred             EEEeeCCCCC
Q 010182          258 ELNLASNLLE  267 (516)
Q Consensus       258 ~L~Ls~n~l~  267 (516)
                      +|++++|+|+
T Consensus         4 ~Ldls~n~l~   13 (22)
T PF00560_consen    4 YLDLSGNNLT   13 (22)
T ss_dssp             EEEETSSEES
T ss_pred             EEECCCCcCE
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.29  E-value=0.00092  Score=62.12  Aligned_cols=86  Identities=21%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             hhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182          205 AAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV  284 (516)
Q Consensus       205 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  284 (516)
                      ..+...+.||++.|.+-.+...|+.++.|..|+++.|.+..+|..++....++.+++..|+.+..|.+++..++++++++
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34567777888877777666667777777778888887777777777777777777877888877777777788888777


Q ss_pred             eCCCCC
Q 010182          285 SGNKLS  290 (516)
Q Consensus       285 s~n~l~  290 (516)
                      .+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.14  E-value=0.032  Score=29.71  Aligned_cols=16  Identities=63%  Similarity=1.032  Sum_probs=7.1

Q ss_pred             CccEEeccCCCCCCch
Q 010182          396 NLKELDLSNNQIHALP  411 (516)
Q Consensus       396 ~L~~L~L~~n~i~~lp  411 (516)
                      +|+.|+|++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.48  E-value=0.0014  Score=61.00  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=80.9

Q ss_pred             CCcchH-hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCccccc
Q 010182          220 LRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH  298 (516)
Q Consensus       220 l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~  298 (516)
                      ++.+|- .+..+...+.||++.|++..+...|+-+..|..|+++.|.+..+|..++.+..+..+++..|..+..|.++..
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            334442 3566788999999999988777778888889999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEeCCCCCCC
Q 010182          299 CRSLVELDASFNRLA  313 (516)
Q Consensus       299 l~~L~~L~L~~n~l~  313 (516)
                      .+.++.+++-+|.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            999999999988764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.68  E-value=0.074  Score=28.30  Aligned_cols=11  Identities=45%  Similarity=0.670  Sum_probs=3.0

Q ss_pred             ccEEEeeCCCC
Q 010182          256 LEELNLASNLL  266 (516)
Q Consensus       256 L~~L~Ls~n~l  266 (516)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.24  E-value=0.052  Score=49.73  Aligned_cols=81  Identities=21%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCC-CCCCch-hhhcCCCcccEE
Q 010182          348 SLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNN-QIHALP-NTFGRLDKLIKL  423 (516)
Q Consensus       348 ~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp-~~l~~l~~L~~L  423 (516)
                      .++.+|.+++.|... -+.+..++.++.|.+.+|. +.+..+...-+-.++|+.|+|++| +||+-. ..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777666552 3456677777777777762 121222111123578999999988 788664 678888899888


Q ss_pred             ecccC
Q 010182          424 NLEEN  428 (516)
Q Consensus       424 ~L~~N  428 (516)
                      .|.+=
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            87653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.04  E-value=0.39  Score=28.44  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=11.2

Q ss_pred             CcccEEecccCCCCCCCHHHH
Q 010182          418 DKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       418 ~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      ++|+.|+|++|.|..++..++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.04  E-value=0.39  Score=28.44  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=11.2

Q ss_pred             CcccEEecccCCCCCCCHHHH
Q 010182          418 DKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       418 ~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      ++|+.|+|++|.|..++..++
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.21  E-value=0.45  Score=28.18  Aligned_cols=21  Identities=43%  Similarity=0.426  Sum_probs=11.0

Q ss_pred             CCCcEEeCCCCCCCcCChhhh
Q 010182          300 RSLVELDASFNRLAYLPTNIG  320 (516)
Q Consensus       300 ~~L~~L~L~~n~l~~l~~~~~  320 (516)
                      ++|+.|++++|.|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.21  E-value=0.45  Score=28.18  Aligned_cols=21  Identities=43%  Similarity=0.426  Sum_probs=11.0

Q ss_pred             CCCcEEeCCCCCCCcCChhhh
Q 010182          300 RSLVELDASFNRLAYLPTNIG  320 (516)
Q Consensus       300 ~~L~~L~L~~n~l~~l~~~~~  320 (516)
                      ++|+.|++++|.|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.02  E-value=0.39  Score=29.20  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=18.2

Q ss_pred             CcccEEecccCCCCCCCHHHHhch
Q 010182          418 DKLIKLNLEENPMVIPPVEVVKEG  441 (516)
Q Consensus       418 ~~L~~L~L~~N~l~~~~~~~~~~~  441 (516)
                      ++|++|+|++|.|+..+...++++
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            578899999999887766665544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.59  E-value=0.27  Score=28.55  Aligned_cols=18  Identities=22%  Similarity=0.187  Sum_probs=9.2

Q ss_pred             CCcccEEecccCCCCCCC
Q 010182          417 LDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       417 l~~L~~L~L~~N~l~~~~  434 (516)
                      +++|++|+|++|.|++.+
T Consensus         1 ~~~L~~L~l~~n~i~~~g   18 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEG   18 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHH
T ss_pred             CCCCCEEEccCCcCCHHH
Confidence            356667777777665443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.36  E-value=0.46  Score=43.72  Aligned_cols=32  Identities=31%  Similarity=0.246  Sum_probs=14.6

Q ss_pred             CCCcEEEccCC-CCCC-cchhhCCCCCCcEEEcc
Q 010182          347 ASLRHLDAHFN-ELHG-LPATIGKLTNLEILNVS  378 (516)
Q Consensus       347 ~~L~~L~Ls~n-~l~~-l~~~l~~l~~L~~L~L~  378 (516)
                      ++|+.|++++| .||+ --..+..+++|+.|.+.
T Consensus       151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            34555555544 3443 12344445555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	516
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-14
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-12
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-12
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-10
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-08
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-08
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		1e-06
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		1e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-05
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-05
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		6e-05
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		7e-05
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		7e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		8e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		9e-05
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		1e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
3cvr_A	571	Crystal Structure Of The Full Length Ipah3 Length =		2e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		3e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		3e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		5e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		5e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		5e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		5e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		6e-04
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		6e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		6e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		7e-04

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 52/224 (23%)
Query: 211 EQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXX 269
           +++DL S  L  LP +AF R+  LRL+ L++N L+ +P  I                   
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------------- 83
Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
                 L NL+ L V+ NKL A                       LP  +  +LVNL +L
Sbjct: 84  ------LKNLETLWVTDNKLQA-----------------------LPIGVFDQLVNLAEL 114
Query: 330 LVPLNKIRFLPTSIGE-MASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL 387
            +  N+++ LP  + + +  L +L   +NEL  LP     KLT+L+ L + +N   +K +
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN--QLKRV 172
Query: 388 PE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           PE  F +LT LK L L NNQ+  +P   F  L+KL  L L+ENP
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
Query: 273 IGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
           I  L N++ L + GNKL  +  ++    +L  L  + N+L  LP  +  +L NL++L++ 
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 333 LNKIRFLPTSI-GEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPE- 389
            N+++ LP  +  ++ +L +L+   N+L  LP     KLTNL  L++S N   ++ LPE 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN--QLQSLPEG 175
Query: 390 TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            F +LT LK+L L  NQ+ ++P+  F RL  L  + L +NP
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 273 IGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
           I  L N++ L + GNKL  +  ++    +L  L  + N+L  LP  +  +L NL++L++ 
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 333 LNKIRFLPTSI-GEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPE- 389
            N+++ LP  +  ++ +L +L  + N+L  LP     KLTNL  L++ +N   ++ LPE 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN--QLQSLPEG 175
Query: 390 TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            F +LT LK+L L++NQ+ ++P+  F RL  L  + L  NP
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLP 363
           LD   N L  LP  +  EL +L +L +  NK++ LP  +  ++ SL +L+   N+L  LP
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 364 -ATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKL 420
                KLT L+ L +++N   ++ LP+  F +LT LK+L L  NQ+ ++P+  F RL  L
Sbjct: 93  NGVFDKLTQLKELALNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 421 IKLNLEENP 429
             + L +NP
Sbjct: 151 QYIWLHDNP 159

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 292 LPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASL 349
           +P ++S+C  LV L  SFN L+  +P+++G  L  L+ L + LN +   +P  +  + +L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408
             L   FN+L G +P+ +   TNL  +++S+N     E+P+  G L NL  L LSNN   
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFS 527
Query: 409 A-LPNTFGRLDKLIKLNLEEN 428
             +P   G    LI L+L  N
Sbjct: 528 GNIPAELGDCRSLIWLDLNTN 548

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 292 LPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASL 349
           +P ++S+C  LV L  SFN L+  +P+++G  L  L+ L + LN +   +P  +  + +L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408
             L   FN+L G +P+ +   TNL  +++S+N     E+P+  G L NL  L LSNN   
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFS 524
Query: 409 A-LPNTFGRLDKLIKLNLEEN 428
             +P   G    LI L+L  N
Sbjct: 525 GNIPAELGDCRSLIWLDLNTN 545

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXX 269
           L+   + + GL  LP+   + AGL  ++L+ N L  +P SIA                  
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIA------------------ 147
Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHE-LVNLQK 328
                          S N+L  L  SI  C  L EL      LA    +  H+ LVNLQ 
Sbjct: 148 ---------------SLNRLREL--SIRACPELTELPEP---LASTDASGEHQGLVNLQS 187
Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
           L +    IR LP SI  + +L+ L    + L  L   I  L  LE L++    T ++  P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYP 246
Query: 389 ETFGELTNLKELDLSN-NQIHALPNTFGRLDKLIKLNL 425
             FG    LK L L + + +  LP    RL +L KL+L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 282 LDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           LD+    L+ L D +      L  L+  +N+L  L   +  +L  L  L +  N++  LP
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 341 TSIGEMASLRHLDAHF---NELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
             +G    L  LD  +   N+L  LP+ +  +LT L+ L +++N   ++ +P   F +LT
Sbjct: 100 --LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLT 155
Query: 396 NLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
           NL+ L LS NQ+ ++P+  F RL KL  + L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 282 LDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           LD+    L+ L D +      L  L+  +N+L  L   +  +L  L  L +  N++  LP
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 341 TSIGEMASLRHLDAHF---NELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
             +G    L  LD  +   N+L  LP+ +  +LT L+ L +++N   ++ +P   F +LT
Sbjct: 100 --LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLT 155
Query: 396 NLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
           NL+ L LS NQ+ ++P+  F RL KL  + L  N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 280 KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR- 337
           K +D+S N L  L   S S+   L  LD S   +  +     H L +L  L++  N I+ 
Sbjct: 30  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGELTN 396
           F P S   + SL +L A   +L  L +  IG+L  L+ LNV+ NF    +LP  F  LTN
Sbjct: 90  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 397 LKELDLSNNQIHAL 410
           L  +DLS N I  +
Sbjct: 150 LVHVDLSYNYIQTI 163

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 280 KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR- 337
           K +D+S N L  L   S S+   L  LD S   +  +     H L +L  L++  N I+ 
Sbjct: 35  KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGELTN 396
           F P S   + SL +L A   +L  L +  IG+L  L+ LNV+ NF    +LP  F  LTN
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 397 LKELDLSNNQIHAL 410
           L  +DLS N I  +
Sbjct: 155 LVHVDLSYNYIQTI 168

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMAS 348
           L+++P  I    + +EL++  N+L  LP  +  +L  L KL +  N+I+ LP        
Sbjct: 19  LTSVPTGIPSSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-------- 68
Query: 349 LRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQI 407
               D  F+          KLT L IL +  N   ++ LP   F +LT LKEL L  NQ+
Sbjct: 69  ----DGVFD----------KLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 408 HALPN-TFGRLDKLIKLNLEENP 429
            ++P+  F RL  L K+ L  NP
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTNP 135

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE-MASLRHLDAHFNELHGLP-ATIG 367
           N++  L   +   L+NL++L +  N++  LP  + + +  L  LD   N+L  LP A   
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLE 426
           +L +L+ L +  N   + ELP     LT+L  L L  NQ+ ++P+  F RL  L    L 
Sbjct: 110 RLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 427 ENP 429
            NP
Sbjct: 168 GNP 170

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           I   S   L+++P  ++   ++  LD S NR+ Y+  +     VNLQ L++  N I  + 
Sbjct: 35  ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92
Query: 341 T-SIGEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSNFTDMKELPET--FGELTN 396
             S   + SL HLD  +N L  L ++  K L++L  LN+  N    K L ET  F  LT 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTK 150
Query: 397 LKELDLSN 404
           L+ L + N
Sbjct: 151 LQILRVGN 158

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
           DNL    K LD+S N L  L   S      L  LD S   +  +       L +L  L++
Sbjct: 26  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 85
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
             N I+ L     + +  +  L  L+ +   L   P  IG L  L+ LNV+ N     +L
Sbjct: 86  TGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 143
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
           PE F  LTNL+ LDLS+N+I ++  T
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCT 169

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 285 SGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SI 343
           S   L+++P  ++   ++  LD S NR+ Y+  +     VNLQ L++  N I  +   S 
Sbjct: 13  SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 344 GEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSNFTDMKELPET--FGELTNLKEL 400
             + SL HLD  +N L  L ++  K L++L  LN+  N    K L ET  F  LT L+ L
Sbjct: 71  SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQIL 128
Query: 401 DLSN 404
            + N
Sbjct: 129 RVGN 132

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
           DNL    K LD+S N L  L   S      L  LD S   +  +       L +L  L++
Sbjct: 26  DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 85
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
             N I+ L     + +  +  L  ++ +   L   P  IG L  L+ LNV+ N     +L
Sbjct: 86  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 143
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
           PE F  LTNL+ LDLS+N+I ++  T
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCT 169

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
           DNL    K LD+S N L  L   S      L  LD S   +  +       L +L  L++
Sbjct: 25  DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 84
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
             N I+ L     + +  +  L  ++ +   L   P  IG L  L+ LNV+ N     +L
Sbjct: 85  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 142
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
           PE F  LTNL+ LDLS+N+I ++  T
Sbjct: 143 PEYFSNLTNLEHLDLSSNKIQSIYCT 168

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 357 NELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
           N L  LPA I  L+NL +L++S N   +  LP   G    LK     +N +  LP  FG 
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 417 LDKLIKLNLEENPM 430
           L  L  L +E NP+
Sbjct: 315 LCNLQFLGVEGNPL 328

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGL-P 363
           D S  +L ++P ++     N+  L +  N++R LP T+    + L  LDA FN +  L P
Sbjct: 10  DCSHLKLTHIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 364 ATIGKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLI 421
                L  L++LN+  N  ++ ++  +TF   TNL ELDL +N IH +  N F     LI
Sbjct: 67  ELCQILPLLKVLNLQHN--ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLI 124
Query: 422 KLNLEENPM 430
           KL+L  N +
Sbjct: 125 KLDLSHNGL 133

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
           DNL    K LD+S N L  L   S      L  LD S   +  +       L +L  L++
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
             N I+ L     + +  +  L  ++ +   L   P  IG L  L+ LNV+ N     +L
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 141
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
           PE F  LTNL+ LDLS+N+I ++  T
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCT 167

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
           DNL    K LD+S N L  L   S      L  LD S   +  +       L +L  L++
Sbjct: 25  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 84
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
             N I+ L     + +  +  L  ++ +   L   P  IG L  L+ LNV+ N     +L
Sbjct: 85  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 142
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
           PE F  LTNL+ LDLS+N+I ++  T
Sbjct: 143 PEYFSNLTNLEHLDLSSNKIQSIYCT 168

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
           L NL  L++S N +S +  ++S   SL +L+ S N++  L P      L  L++L +  N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
           K+  +   + ++ +L  L A  N++  +   +G LTNL+ L+++ N   +K++  T   L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
           TNL +LDL+NNQI  L    G L KL +L L  N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  D+ ELP     
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--DLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 22/169 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
           L +L+ LD+S N LS       S     SL  LD SFN +  + +N     + L++L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQL--- 398
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
              + F  +++ +M+      SLR   +LD +H +           L++LE+L ++ N  
Sbjct: 399 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPM 430
               LP+ F EL NL  LDLS  Q+  L P  F  L  L  LN+  N +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338
           L+ L+VSGN+L++LP        L+EL    N L +LP         L KL +  N++  
Sbjct: 83  LRTLEVSGNQLTSLP---VLPPGLLELSIFSNPLTHLPALPS----GLCKLWIFGNQLTS 135
Query: 339 LPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLK 398
           LP        L+ L    N+L  LPA   +L  L   N  +  T +  LP      + L+
Sbjct: 136 LPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYN--NQLTSLPMLP------SGLQ 184
Query: 399 ELDLSNNQIHALPNTFGRLDKLIKLN 424
           EL +S+NQ+ +LP     L KL   N
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYN 210

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
           L NL  L++S N +S +  ++S   SL +L  S N++  L P      L  L++L +  N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
           K+  +   + ++ +L  L A  N++  +   +G LTNL+ L+++ N   +K++  T   L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
           TNL +LDL+NNQI  L    G L KL +L L  N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
           L NL  L++S N +S +  ++S   SL +L  S N++  L P      L  L++L +  N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
           K+  +   + ++ +L  L A  N++  +   +G LTNL+ L+++ N   +K++  T   L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
           TNL +LDL+NNQI  L    G L KL +L L  N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273

>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 24/136 (17%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHEL-VNLQKLLVPLNKIR 337
           + +L+++ N L +LP+  +   SL  LDA  NRL+ LP     EL  +L+ L V  N++ 
Sbjct: 82  ITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP-----ELPASLKHLDVDNNQLT 133
Query: 338 FLPTSIGEM-ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELT 395
            LP    E+ A L +++A  N+L  LP      T+LE+L+V +N  T + ELPE+     
Sbjct: 134 XLP----ELPALLEYINADNNQLTXLPELP---TSLEVLSVRNNQLTFLPELPES----- 181
Query: 396 NLKELDLSNNQIHALP 411
            L+ LD+S N + +LP
Sbjct: 182 -LEALDVSTNLLESLP 196

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
           L +L+ LD+S N LS       S     SL  LD SFN +  + +N     + L++L   
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----FLGLEQL--- 422
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
              + F  +++ +M+      SLR   +LD +H +           L++LE+L ++ N  
Sbjct: 423 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
               LP+ F EL NL  LDLS  Q+  L P  F  L  L  LN+  N
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH----ELVNLQKLLVPLNKI 336
           + D      +++P  ++   ++  LD SFN++ Y    IGH       NLQ L++  ++I
Sbjct: 9   VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRI 62
Query: 337 RFLP-TSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGEL 394
             +   +   + SL HLD   N L  L ++  G L++L+ LN+  N      +   F  L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 395 TNLKELDLSN 404
           TNL+ L + N
Sbjct: 123 TNLQTLRIGN 132

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
           L +L+ LD+S N LS       S     SL  LD SFN +  + +N     + L++L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQL--- 398
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
              + F  +++ +M+      SLR   +LD +H +           L++LE+L ++ N  
Sbjct: 399 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
               LP+ F EL NL  LDLS  Q+  L P  F  L  L  LN+  N
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
           IG L  L+ LNV+ N     +LPE F  LTNL+ LDLS+N+I ++  T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH----ELVNLQKLLVPLNKI 336
           + D      +++P  ++   ++  LD SFN++ Y    IGH       NLQ L++  ++I
Sbjct: 35  VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRI 88
Query: 337 RFLP-TSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGEL 394
             +   +   + SL HLD   N L  L ++  G L++L+ LN+  N      +   F  L
Sbjct: 89  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 148
Query: 395 TNLKELDLSN 404
           TNL+ L + N
Sbjct: 149 TNLQTLRIGN 158

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
           N+++ LP   +     L  L    N+L  LPA  +  L NL+ L +  N   +  +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
           N+++ LP   +     L  L    N+L  LPA  +  L NL+ L +  N   +  +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  ++ ELP     
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
           N+++ LP   +     L  L    N+L  LPA  +  L NL+ L +  N   +  +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  ++ ELP     
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  ++ ELP     
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
           N+++ LP   +     L  L    N+L  LPA  +  L NL+ L +  N   +  +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 323 LVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
           L  L++      ++  +P ++  +M +L HL+   N +  +P+ +   L NLE +   SN
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSN 180
Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
              ++++P   FG++  LK+L+L++NQ+ ++P+  F RL  L K+ L  NP
Sbjct: 181 --KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 75  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  ++ ELP     
Sbjct: 135 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 170
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 171 GLENLDTLLLQENSLYTIPKGF 192

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
           G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ+L +  
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
           N+++ LP                      P  +     LE L++++N  ++ ELP     
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
            L NL  L L  N ++ +P  F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	516
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-66
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-55
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-50
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-55
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-49
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-48
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-45
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-44
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-33
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-44
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-37
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-30
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-38
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-37
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-30
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-33
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-28
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-28
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-26
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-26
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-25
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-23
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-22
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-20
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-10
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	8e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  216 bits (553), Expect = 2e-66
 Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 13/234 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIA--GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
           + +    + R L+   +        G   + L +  L   PD    L +L+ + + +  L
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL 116

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS-FNRLAYLPTNIG----- 320
             LPD++     L+ L ++ N L ALP SI+    L EL       L  LP  +      
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 321 ---HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNV 377
                LVNLQ L +    IR LP SI  + +L+ L    + L  L   I  L  LE L++
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236

Query: 378 SSNFTDMKELPETFGELTNLKELDLSN-NQIHALPNTFGRLDKLIKLNLEENPM 430
               T ++  P  FG    LK L L + + +  LP    RL +L KL+L     
Sbjct: 237 RGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  208 bits (532), Expect = 3e-63
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 14/245 (5%)

Query: 196 EEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVN 255
           +    LL++A       ++L S  L   P+   R++ L+ M++    L  +PD++     
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG 128

Query: 256 LEELNLASNLLETLPDSIGLLDNLKILDVSG-NKLSALPDSI---------SHCRSLVEL 305
           LE L LA N L  LP SI  L+ L+ L +    +L+ LP+ +             +L  L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPA 364
              +  +  LP +I + L NL+ L +  + +  L  +I  +  L  LD      L   P 
Sbjct: 189 RLEWTGIRSLPASIAN-LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN-QIHALPNTFGRLDKLIKL 423
             G    L+ L +  + +++  LP     LT L++LDL     +  LP+   +L     +
Sbjct: 248 IFGGRAPLKRLILK-DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Query: 424 NLEEN 428
            +  +
Sbjct: 307 LVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  186 bits (474), Expect = 7e-55
 Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLAS-NLL 266
             L+ + + + GL  LP+   + AGL  ++L+ N L  +P SIA L  L EL++ +   L
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163

Query: 267 ETLPDSIG---------LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPT 317
             LP+ +           L NL+ L +    + +LP SI++ ++L  L    + L+ L  
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223

Query: 318 NIGHELVNLQKL-LVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPATIGKLTNLEIL 375
            I H L  L++L L     +R  P   G  A L+ L     + L  LP  I +LT LE L
Sbjct: 224 AIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 376 NVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
           ++     ++  LP    +L     + +  +    L 
Sbjct: 283 DLRGC-VNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  174 bits (443), Expect = 2e-50
 Identities = 50/234 (21%), Positives = 79/234 (33%), Gaps = 19/234 (8%)

Query: 208 KSLEQVDLS-SRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
              E +    S  LR   +   +    +    ++ +        A   N +        L
Sbjct: 12  SGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL 68

Query: 267 ETLPDSIGLL--DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
           +   D +          L++    L   PD       L  +      L  LP  +     
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FA 127

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPATIGK---------LTNLEI 374
            L+ L +  N +R LP SI  +  LR L      EL  LP  +           L NL+ 
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 375 LNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           L +      ++ LP +   L NLK L + N+ + AL      L KL +L+L   
Sbjct: 188 LRLEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 1e-26
 Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 289 LSALPDSISHCRSLVELD-ASFNRLAYLPTNIG-------------------HELVNLQK 328
           + +      H      L       L      +                        N Q 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 329 LLVPLNKIRFLPTSIGE--MASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
                  ++     + +        L+     L   P    +L++L+ + + +    + E
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA--GLME 118

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
           LP+T  +   L+ L L+ N + ALP +   L++L +L++   P
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (426), Expect = 2e-45
 Identities = 46/252 (18%), Positives = 97/252 (38%), Gaps = 33/252 (13%)

Query: 208 KSLEQVDLSSRG-LRFLPEAFGRIAGLRLMSLSNNHLEVIPD---------SIAGLVNLE 257
           K L  V++ +   L  LP     +  ++L++++ N                       ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 258 ELNLASNLLETL--PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL 315
            + +  N L+T     S+  +  L +L+   N+L     +      L  L+ ++N++  +
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI 368

Query: 316 PTNIGHELVNLQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHG--------LPAT 365
           P N       ++ L    NK++++P       ++ +  +D  +NE+          L  T
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 366 IGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALP--------NTFGR 416
             K  N+  +N+S+N  +  K   E F   + L  ++L  N +  +P          F  
Sbjct: 429 PFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 417 LDKLIKLNLEEN 428
              L  ++L  N
Sbjct: 487 TYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  165 bits (420), Expect = 1e-44
 Identities = 45/261 (17%), Positives = 93/261 (35%), Gaps = 27/261 (10%)

Query: 192 EEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFL--PEAFGRIAGLRLMSLSNNHLEVIPDS 249
           E++ ++   L     G+ ++ + +    L+      +  ++  L ++    N LE    +
Sbjct: 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

Query: 250 IAGLVNLEELNLASNLLETLPDSI-GLLDNLKILDVSGNKLSALPD--SISHCRSLVELD 306
               + L  LNLA N +  +P +  G  + ++ L  + NKL  +P+         +  +D
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408

Query: 307 ASFNRL--------AYLPTNIGHELVNLQKLLVPLNKI-RFLPTSIGEMASLRHLDAHFN 357
            S+N +          L        +N+  + +  N+I +F        + L  ++   N
Sbjct: 409 FSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 358 ELHGLPA--------TIGKLTNLEILNVSSNFTDMKELPETF--GELTNLKELDLSNNQI 407
            L  +P                L  +++  N   + +L + F    L  L  +DLS N  
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK--LTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 408 HALPNTFGRLDKLIKLNLEEN 428
              P        L    +   
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  161 bits (410), Expect = 3e-43
 Identities = 42/257 (16%), Positives = 95/257 (36%), Gaps = 28/257 (10%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPD--SIAGLVNLEELNLASN 264
             L  ++L+   +  +P    G    +  +S ++N L+ IP+      +  +  ++ + N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 265 LLE--------TLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYL 315
            +          L  +     N+  +++S N++S  P +  S    L  ++   N L  +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 316 PTNIGHE-------LVNLQKLLVPLNKIRFLPTSI--GEMASLRHLDAHFNELHGLPATI 366
           P N   +          L  + +  NK+  L        +  L  +D  +N     P   
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 367 GKLTNLEILNVSSNFTD-----MKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLI 421
              + L+   + +         ++E PE      +L +L + +N I  +         + 
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNIS 590

Query: 422 KLNLEENPMVIPPVEVV 438
            L++++NP +   +  V
Sbjct: 591 VLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  138 bits (349), Expect = 4e-35
 Identities = 40/232 (17%), Positives = 77/232 (33%), Gaps = 32/232 (13%)

Query: 208 KSLEQVDLSS--------RGLRFLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEE 258
             +  +D S         +    L     +   +  ++LSNN +     +  +    L  
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 259 LNLASNLLETLP--------DSIGLLDNLKILDVSGNKLSALPDSI--SHCRSLVELDAS 308
           +NL  N+L  +P        ++      L  +D+  NKL+ L D    +    LV +D S
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 309 FNRLAYLPTNIGHELVNLQKLLVPLNKI-------RFLPTSIGEMASLRHLDAHFNELHG 361
           +N  +  PT   +    L+   +   +        R  P  I    SL  L    N++  
Sbjct: 522 YNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 362 LPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPN 412
           +   I    N+ +L++  N    +                 L  ++   +  
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISID--LSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (338), Expect = 1e-33
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 26/238 (10%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE------VIPDSIAGLVNLEELNLA 262
           S EQ       + +               L  + +        I  S    +   ++   
Sbjct: 134 SDEQKQKMR--MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191

Query: 263 SNLLETLPDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGH 321
           SN +  +  ++  L  L+   +  +   A          +         +         +
Sbjct: 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDN 247

Query: 322 ELVNLQKL-LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP---------ATIGKLTN 371
            L +L  + +     +  LPT +  +  ++ ++   N               A       
Sbjct: 248 -LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 372 LEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           ++I+ +  N       +  +  ++  L  L+   NQ+      FG   KL  LNL  N
Sbjct: 307 IQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  127 bits (320), Expect = 3e-31
 Identities = 26/242 (10%), Positives = 80/242 (33%), Gaps = 30/242 (12%)

Query: 209 SLEQVDLSSRGLRF-LPEAFGRIAGLRLMSLSNNHLEV-----IPDSIAGLVNLEELNLA 262
            +  + L   G    +P+A G++  L +++L ++  +V      P  I+  ++ E+    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 263 SNLLETLPDSIGLLDNLKILDVSGNKLS------ALPDSISHCRSLVELDASFNRLAYLP 316
                     +         D+  + ++      ++  S        ++    N + ++ 
Sbjct: 142 RMHY--QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 317 TNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEIL 375
             +   L  L++  +  +           E  +  +      +          L +L  +
Sbjct: 200 KAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDV 254

Query: 376 NVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN---------TFGRLDKLIKLNLE 426
            V +   ++ +LP     L  ++ ++++ N+  +                 +K+  + + 
Sbjct: 255 EVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 427 EN 428
            N
Sbjct: 314 YN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (298), Expect = 2e-28
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 28/214 (13%)

Query: 249 SIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSL 302
           S+     +  L+L        +PD+IG L  L++L +  +          P  IS   S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 303 VELDASFNRLAY--LPTNIGHELVNLQKL-LVPLNKIRFLPTSIGEMASLRHLDAHFNEL 359
            +            +  +   +  +L K  +    + + +  S         +    N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 360 HGLPATIGKLTNLEILNVSSN------------------FTDMKELPETFGELTNLKELD 401
             +   + +LT L    + ++                      K     +  L +L +++
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 402 LS-NNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
           +     +  LP     L ++  +N+  N  +   
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  167 bits (424), Expect = 2e-45
 Identities = 66/247 (26%), Positives = 97/247 (39%), Gaps = 35/247 (14%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI--------------AGLV 254
            L  +++S   L  LP     +  L + S    HL  +P  +                  
Sbjct: 82  ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPP 141

Query: 255 NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAY 314
            L+EL+++ N L +LP        L  L    N+L++LP   S    L EL  S N+LA 
Sbjct: 142 GLQELSVSDNQLASLPALPS---ELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQLAS 195

Query: 315 LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEI 374
           LPT        L KL    N++  LP        L+ L    N L  LP    +L  L  
Sbjct: 196 LPTLPS----ELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSELKEL-- 246

Query: 375 LNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
             VS N   +  LP      + L  L +  NQ+  LP +   L     +NLE NP+    
Sbjct: 247 -MVSGNR--LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300

Query: 435 VEVVKEG 441
           ++ ++E 
Sbjct: 301 LQALREI 307

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  157 bits (398), Expect = 1e-41
 Identities = 61/267 (22%), Positives = 94/267 (35%), Gaps = 37/267 (13%)

Query: 184 EEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL 243
               P         V+  ++         +++   GL  LP+     A +  + + +N+L
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL 73

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH----- 298
             +P        L  L ++ N L +LP     L  L I       L ALP  +       
Sbjct: 74  TSLPALPP---ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130

Query: 299 ---------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL 349
                       L EL  S N+LA LP         L KL    N++  LP        L
Sbjct: 131 NQLTSLPVLPPGLQELSVSDNQLASLPALPS----ELCKLWAYNNQLTSLPMLPS---GL 183

Query: 350 RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA 409
           + L    N+L  LP    +L  L   N          LP      + LKEL +S N++ +
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYNNRLT-----SLPA---LPSGLKELIVSGNRLTS 235

Query: 410 LPNTFGRLDKLIKLNLEENPMVIPPVE 436
           LP       +L +L +  N +   P+ 
Sbjct: 236 LPVLPS---ELKELMVSGNRLTSLPML 259

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  100 bits (251), Expect = 1e-22
 Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 12/191 (6%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
            L ++   +  L  LP      +GL+ + +S N L  +P   +    L+EL ++ N L +
Sbjct: 202 ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTS 255

Query: 269 LPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
           LP        L  L V  N+L+ LP+S+ H  S   ++   N L+        E+ +   
Sbjct: 256 LPMLPS---GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
              P+ +      S                   +PA  G+    +  ++     +     
Sbjct: 313 YSGPIIRFDMAGAS---APRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFS 369

Query: 389 ETFGELTNLKE 399
                L+  + 
Sbjct: 370 LFLDRLSETEN 380

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  168 bits (427), Expect = 6e-45
 Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 24/242 (9%)

Query: 208 KSLEQVDLSSRGLRFLPE--AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNL 265
             ++   +    L   P   +  ++  L L+   +N +  +  +    V L +L L  N 
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ 606

Query: 266 LETLPDSIG-LLDNLKILDVSGNKLSALPD--SISHCRSLVELDASFNRLAYLPTNIG-- 320
           +E +P+      D ++ L  S NKL  +P+  +      +  +D S+N++     NI   
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 321 ---HELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNEL--------HGLPATIGK 368
              ++ +N   + +  N+I+  PT +    + +  +    N +                 
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 369 LTNLEILNVSSNFTDMKELPE--TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426
              L  +++  N   +  L +      L  L  +D+S N   + P       +L    + 
Sbjct: 727 TYLLTTIDLRFNK--LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784

Query: 427 EN 428
             
Sbjct: 785 HQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  164 bits (416), Expect = 1e-43
 Identities = 47/251 (18%), Positives = 99/251 (39%), Gaps = 33/251 (13%)

Query: 208 KSLEQVDLSSR-GLRFLPEAFGRIAGLRLMSLSNNHLEV----------IPDSIAGLVNL 256
           K L  V+L +   +  LP+    +  L+ ++++ N              + D       +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 257 EELNLASNLLETLPDSIGL--LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAY 314
           +   +  N LE  P S  L  +  L +LD   NK+  L  +      L +L   +N++  
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEE 609

Query: 315 LPTNIGHELVNLQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIG----- 367
           +P +       ++ L    NK++++P   +   +  +  +D  +N++      I      
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 368 -KLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALPN--------TFGRL 417
            K  N   + +S N  ++++ P E F   + +  + LSNN + ++P          +   
Sbjct: 670 YKGINASTVTLSYN--EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 418 DKLIKLNLEEN 428
             L  ++L  N
Sbjct: 728 YLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  162 bits (411), Expect = 8e-43
 Identities = 39/252 (15%), Positives = 89/252 (35%), Gaps = 26/252 (10%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAG-LRLMSLSNNHLEVIPD--SIAGLVNLEELNLASN 264
             L  + L    +  +PE F      +  +  S+N L+ IP+  +   +  +  ++ + N
Sbjct: 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 265 LLETLPDSIGL------LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPT 317
            + +   +I          N   + +S N++   P  + +    +  +  S N +  +P 
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 318 NIGHE-------LVNLQKLLVPLNKIRFLPTSI--GEMASLRHLDAHFNELHGLPATIGK 368
           N              L  + +  NK+  L        +  L ++D  +N     P     
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 369 LTNLEILNVSSNFTD-----MKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKL 423
            + L+   +           +++ P       +L +L + +N I  +        +L  L
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYIL 832

Query: 424 NLEENPMVIPPV 435
           ++ +NP +   V
Sbjct: 833 DIADNPNISIDV 844

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (371), Expect = 1e-37
 Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 29/231 (12%)

Query: 208 KSLEQVDLSSRGLRFLPEAF--GRIAGLRLMSLSNNHLEVIPDSIAG------LVNLEEL 259
             +E +  S   L+++P  F    +  +  +  S N +     +I+        +N   +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 260 NLASNLLETLPDSI-GLLDNLKILDVSGNKLSALPD--------SISHCRSLVELDASFN 310
            L+ N ++  P  +      +  + +S N ++++P+        +  +   L  +D  FN
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 311 RLAYLPTNIGHE-LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE-------LHGL 362
           +L  L  +     L  L  + V  N     PT     + L+               L   
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 363 PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
           P  I    +L  L + SN  D++++ E       L  LD+++N   ++  T
Sbjct: 799 PTGITTCPSLIQLQIGSN--DIRKVDEKL--TPQLYILDIADNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  141 bits (356), Expect = 9e-36
 Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 26/248 (10%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNH---LEVIPDSIAGLVNLEELNLASN 264
             L+ +   +         FG       MS    H   +      +     L   +L  +
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 265 LLETLPDSIGL-------LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPT 317
            +   P+   +       L + +I +++ N+++ +  +I     L  +  + +   Y   
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 318 NIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPATIGKLTNLEILN 376
            +  E  N         +      S   +  L  ++  +   +  LP  +  L  L+ LN
Sbjct: 466 AVDWEDANSDY----AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 377 VSSN--------FTDMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLE 426
           ++ N          D   L +       ++   +  N +   P   +  ++ KL  L+  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 427 ENPMVIPP 434
            N +    
Sbjct: 582 HNKVRHLE 589

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 2e-29
 Identities = 29/212 (13%), Positives = 71/212 (33%), Gaps = 15/212 (7%)

Query: 233 LRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLETLPDSIG---LLDNLKILDVSGNK 288
           +  +SL+    +  +PD+I  L  L+ L+  ++         G   L  ++        +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 289 LSALPDSISHCRSLVELDASFNRLAYLPTNIG---HELVNLQKLLVPL--NKIRFLPTSI 343
           +      + + + L   D   + +   P          ++L+   +    N+I F+  +I
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 344 GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLS 403
             +  L+ +    +        +                       ++  L +L +++L 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-----NEELSWSNLKDLTDVELY 499

Query: 404 -NNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
               +  LP+    L +L  LN+  N  +   
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  100 bits (250), Expect = 2e-22
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 21/171 (12%)

Query: 208 KSLEQVDLSS--------RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA--GLVNLE 257
             +  + LS+          L+     +     L  + L  N L  + D      L  L 
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 258 ELNLASNLLETLPDSIGLLDNLKILDVSGNK-------LSALPDSISHCRSLVELDASFN 310
            ++++ N   + P        LK   +   +       L   P  I+ C SL++L    N
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELH 360
            +  +   +      L  L +  N    +  TS+            +++  
Sbjct: 817 DIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 34/302 (11%), Positives = 83/302 (27%), Gaps = 23/302 (7%)

Query: 140 EDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVM 199
           ++     NA  K +++          L     ++V     +++G +      + V  E  
Sbjct: 185 KEHQNPDNANDKYMDIGVATCDSAVWLPAGTYQVVAYTTYSQSGIKRSELETQSVRGESF 244

Query: 200 GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEE 258
            ++     K             ++ +     A    +   N        ++    +N   
Sbjct: 245 TVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF 304

Query: 259 LNLASNLLETLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPT 317
                   +     +     +  L ++G      +PD+I     L  L    +       
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 318 NIGHELVNLQKLLVPLNKIR--FLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEIL 375
             G E +         ++IR  +    +     L   D   + ++  P  +  +     +
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRI 423

Query: 376 NVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPV 435
           ++                     ++    N+I  +     RL KL  +    +P     +
Sbjct: 424 SLKDT------------------QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 436 EV 437
            V
Sbjct: 466 AV 467

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  157 bits (399), Expect = 4e-44
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
            +++++DLS   L  +          L L++LS+N L    D +  L  L  L+L +N +
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
           + L        +++ L  + N +S +  S    +    +  + N++  L          +
Sbjct: 93  QELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 327 QKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
           Q L + LN+I  +          +L HL+  +N ++ +   +     L+ L++SSN   +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN--KL 203

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
             +   F     +  + L NN++  +         L   +L  N 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (369), Expect = 8e-40
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETLP-DSIGLLDNLK 280
           + E        ++  ++++ L+    S+     N++EL+L+ N L  +    +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           +L++S N L    D +    +L  LD + N +  L         +++ L    N I  + 
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS 115

Query: 341 TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399
            S G+    +++    N++  L     G  + ++ L++  N  D     E       L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 400 LDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           L+L  N I+ +        KL  L+L  N
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  128 bits (325), Expect = 1e-33
 Identities = 35/224 (15%), Positives = 83/224 (37%), Gaps = 13/224 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +L  +DL++  ++ L         +  +  +NN++  +  S       + + LA+N + 
Sbjct: 80  STLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSR--GQGKKNIYLANNKIT 133

Query: 268 TLPD-SIGLLDNLKILDVSGNKLSALP--DSISHCRSLVELDASFNRLAYLPTNIGHELV 324
            L D   G    ++ LD+  N++  +   +  +   +L  L+  +N +  +   +     
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FA 191

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
            L+ L +  NK+ F+       A +  +    N+L  +   +    NLE  ++  N    
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
             L + F +   +    ++   +  L         +  L     
Sbjct: 252 GTLRDFFSKNQRV--QTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASL 349
           A+ +   +         + + L     ++     N+++L +  N +  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 350 RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA 409
             L+   N L+     +  L+ L  L++++N   ++EL        +++ L  +NN I  
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNN--YVQELL----VGPSIETLHAANNNISR 113

Query: 410 LPNTFGRLDKLIKLNLEEN 428
           +     R      + L  N
Sbjct: 114 VS--CSRGQGKKNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 1/123 (0%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L+ +DLSS  L F+   F   AG+  +SL NN L +I  ++    NLE  +L  N   
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSIS-HCRSLVELDASFNRLAYLPTNIGHELVNL 326
                     N ++  V+   +  L       C               LP      L+ L
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 327 QKL 329
              
Sbjct: 311 GHH 313

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  162 bits (412), Expect = 6e-44
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 30/269 (11%)

Query: 208 KSLEQVDLSS----RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLAS 263
              E+  L        +  L E    I     + L+  +L  +PD++     +  L +  
Sbjct: 34  DKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNL--PPQITVLEITQ 89

Query: 264 NLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHEL 323
           N L +LP+      +L+ LD   N+LS LP+  +   SL  LD   N+L  LP       
Sbjct: 90  NALISLPELPA---SLEYLDACDNRLSTLPELPA---SLKHLDVDNNQLTMLPELPA--- 140

Query: 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
             L+ +    N++  LP       SL  L    N+L  LP       +LE L+VS+N   
Sbjct: 141 -LLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLPELPE---SLEALDVSTNL-- 191

Query: 384 MKELPETFGELTNLKE----LDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK 439
           ++ LP       + +E         N+I  +P     LD    + LE+NP+     E + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 440 EGVGAVKTFMAKRWLDILLEEERRSMLKL 468
           +          + +  +   ++      L
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  162 bits (410), Expect = 1e-43
 Identities = 63/277 (22%), Positives = 106/277 (38%), Gaps = 27/277 (9%)

Query: 192 EEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA 251
            E   E + LL+E       ++ L+   L  LP+       + ++ ++ N L  +P+  A
Sbjct: 43  GENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPA 100

Query: 252 GLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNR 311
              +LE L+   N L TLP+      +LK LDV  N+L+ LP+  +    L  ++A  N+
Sbjct: 101 ---SLEYLDACDNRLSTLPELPA---SLKHLDVDNNQLTMLPELPA---LLEYINADNNQ 151

Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTN 371
           L  LP        +L+ L V  N++ FLP       SL  LD   N L  LPA   +  +
Sbjct: 152 LTMLPELPT----SLEVLSVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHH 204

Query: 372 LE----ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
            E          N   +  +PE    L     + L +N + +       L +        
Sbjct: 205 SEETEIFFRCREN--RITHIPENILSLDPTCTIILEDNPLSSRIRES--LSQQTAQPDYH 260

Query: 428 NPMVIPPVEVVKEGVGAVKTFMAKR-WLDILLEEERR 463
            P +   +   ++         A   W     + +  
Sbjct: 261 GPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (250), Expect = 1e-22
 Identities = 31/216 (14%), Positives = 69/216 (31%), Gaps = 12/216 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
            LE ++  +  L  LPE       L ++S+ NN L  +P+      +LE L++++NLLE+
Sbjct: 141 LLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPELPE---SLEALDVSTNLLES 194

Query: 269 LPDSIGLLDNLK----ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
           LP       + +          N+++ +P++I        +    N L+        +  
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
                  P             +                 + + ++ +       +N    
Sbjct: 255 AQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHAN--TF 312

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL 420
               +   +  + +       Q+ A         +L
Sbjct: 313 SAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  155 bits (393), Expect = 2e-42
 Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
             L  + L    L  LP   F     L  +S+SNN+LE I D       +L+ L L+SN 
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
           L  +     L+ +L   +VS N LS L   I+    + ELDAS N +  +   +    V 
Sbjct: 177 LTHVDL--SLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV---NVE 227

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDM 384
           L  L +  N +      +     L  +D  +NEL  +      K+  LE L +S+N   +
Sbjct: 228 LTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RL 284

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
             L      +  LK LDLS+N +  +     + D+L  L L+ N +
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  146 bits (370), Expect = 2e-39
 Identities = 51/225 (22%), Positives = 100/225 (44%), Gaps = 16/225 (7%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            +++++ +    +R+LP   F  +  L ++ L  N L  +P  I      L  L++++N 
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
           LE + D       +L+ L +S N+L+ +  S+    SL   + S+N L+ L   I     
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIPI----- 205

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
            +++L    N I  +   +     L  L    N L      +     L  +++S N  ++
Sbjct: 206 AVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN--EL 260

Query: 385 KELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           +++    F ++  L+ L +SNN++ AL      +  L  L+L  N
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  144 bits (364), Expect = 2e-38
 Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 16/224 (7%)

Query: 209 SLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            L  + +S+  L  +  + F     L+ + LS+N L  +  S   + +L   N++ NLL 
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLS 199

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
           TL   I     ++ LD S N ++ +   +     L  L    N L      +      L 
Sbjct: 200 TLAIPI----AVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLN--YPGLV 251

Query: 328 KLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
           ++ +  N++  +      +M  L  L    N L  L      +  L++L++S N   +  
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN--HLLH 309

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
           +     +   L+ L L +N I  L         L  L L  N  
Sbjct: 310 VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  143 bits (362), Expect = 3e-38
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 15/225 (6%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            + + V   +  +R LP         + L++L++  +E I     A    +++L +  N 
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 266 LETLPDSIGL-LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           +  LP  +   +  L +L +  N LS+LP  I  +   L  L  S N L  +  +     
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
            +LQ L +  N++  +   +  + SL H +  +N L  L         +E L+ S N   
Sbjct: 165 TSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHN--S 216

Query: 384 MKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           +  +         L  L L +N +            L++++L  N
Sbjct: 217 INVVRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 2e-35
 Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 14/222 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            SL+ + LSS  L  +      I  L   ++S N L  +       + +EEL+ + N + 
Sbjct: 165 TSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNSIN 218

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +     +   L IL +  N L+     + +   LVE+D S+N L  +  +   ++  L+
Sbjct: 219 VVRG--PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           +L +  N++  L      + +L+ LD   N L  +     +   LE L +  N   +  L
Sbjct: 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN--SIVTL 333

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
                    LK L LS+N              + +  +++  
Sbjct: 334 K--LSTHHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (334), Expect = 2e-34
 Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 15/221 (6%)

Query: 212 QVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETLP 270
            +D+ ++ + +       +   ++++  N+ +  +P ++      +E LNL    +E + 
Sbjct: 27  HIDMQTQDV-YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 271 DSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
                    ++ L +  N +  LP  +  +   L  L    N L+ LP  I H    L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 329 LLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           L +  N +  +         SL++L    N L  +   +  + +L   NVS N       
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL------ 197

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
             T      ++ELD S+N I+ +        +L  L L+ N
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHN 236

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (316), Expect = 7e-32
 Identities = 34/204 (16%), Positives = 81/204 (39%), Gaps = 18/204 (8%)

Query: 235 LMSLSNNHLEVIPDSI------AGLVNLEELNLASNLLETLPDSI-GLLDNLKILDVSGN 287
                + H+++    +        L N + +   ++ +  LP ++      +++L+++  
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 288 KLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GE 345
           ++  +     ++  ++ +L   FN + YLP ++   +  L  L++  N +  LP  I   
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 346 MASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
              L  L    N L  +        T+L+ L +SSN   +  +      + +L   ++S 
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--RLTHVD--LSLIPSLFHANVSY 195

Query: 405 NQIHALPNTFGRLDKLIKLNLEEN 428
           N +  L         + +L+   N
Sbjct: 196 NLLSTLAI----PIAVEELDASHN 215

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 6/160 (3%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELN 260
           ++      L  + L    L           GL  + LS N LE I       +  LE L 
Sbjct: 220 VRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 261 LASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG 320
           +++N L  L      +  LK+LD+S N L  +  +      L  L    N +  L  +  
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 337

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360
                L+ L +  N             ++        + H
Sbjct: 338 --HHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKL 369
               + +N+ ++ V     +    +  +       + + + +    + +  LPA +    
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 370 TNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEE 427
             +E+LN++     ++E+    F     +++L +  N I  LP + F  +  L  L LE 
Sbjct: 69  RQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 428 N 428
           N
Sbjct: 127 N 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  152 bits (386), Expect = 5e-41
 Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 24/257 (9%)

Query: 172 RLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIA 231
              + Y      E   PP   E  E  +  L++   +   +++L++ GL  LPE      
Sbjct: 35  SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH-- 92

Query: 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA 291
            L  +  S N L  +P+    L +L   N     L  LP        L+ L VS N+L  
Sbjct: 93  -LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEK 145

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
           LP+ + +   L  +D   N L  LP        +L+ +    N++  LP  +  +  L  
Sbjct: 146 LPE-LQNSSFLKIIDVDNNSLKKLPDLPP----SLEFIAAGNNQLEELP-ELQNLPFLTA 199

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
           + A  N L  LP       +LE +   +N   ++ELPE    L  L  +   NN +  LP
Sbjct: 200 IYADNNSLKKLP---DLPLSLESIVAGNN--ILEELPE-LQNLPFLTTIYADNNLLKTLP 253

Query: 412 NTFGRLDKLIKLNLEEN 428
           +       L  LN+ +N
Sbjct: 254 DLPP---SLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (364), Expect = 5e-38
 Identities = 60/220 (27%), Positives = 92/220 (41%), Gaps = 21/220 (9%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
            LE +  S   L  LPE    +  L + + +   L  +P        LE L +++N LE 
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEK 145

Query: 269 LPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
           LP+ +     LKI+DV  N L  LPD      SL  + A  N+L  LP  + + L  L  
Sbjct: 146 LPE-LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-ELQN-LPFLTA 199

Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
           +    N ++ LP       SL  + A  N L  LP  +  L  L  +   +N   +K LP
Sbjct: 200 IYADNNSLKKLPDLPL---SLESIVAGNNILEELP-ELQNLPFLTTIYADNN--LLKTLP 253

Query: 389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           +      +L+ L++ +N +  LP     L  L       +
Sbjct: 254 D---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (346), Expect = 1e-35
 Identities = 60/243 (24%), Positives = 97/243 (39%), Gaps = 43/243 (17%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
           SLE +   +  L  LPE    +  L  +   NN L+ +PD      +LE LN+  N L  
Sbjct: 216 SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTD 271

Query: 269 LPDSIG-----------------LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNR 311
           LP+                    L  NL  L+ S N++ +L D      SL EL+ S N+
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP---SLEELNVSNNK 328

Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTN 371
           L  LP         L++L+   N +  +P       +L+ L   +N L   P     + +
Sbjct: 329 LIELPALPP----RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVED 381

Query: 372 LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV 431
           L + +  +      E+PE      NLK+L +  N +   P+     + +  L +    +V
Sbjct: 382 LRMNSHLA------EVPE---LPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV 429

Query: 432 IPP 434
            P 
Sbjct: 430 DPY 432

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (342), Expect = 6e-35
 Identities = 61/217 (28%), Positives = 92/217 (42%), Gaps = 25/217 (11%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L  +   +  L+ LP+       L  +   NN LE +P+ +  L  L  +   +NLL+
Sbjct: 195 PFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK 250

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
           TLPD      +L+ L+V  N L+ LP+       L   +  F+ L+ LP        NL 
Sbjct: 251 TLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLY 300

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L    N+IR L        SL  L+   N+L  LPA       LE L  S N   + E+
Sbjct: 301 YLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPALPP---RLERLIASFN--HLAEV 352

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN 424
           PE      NLK+L +  N +   P+    ++ L   +
Sbjct: 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 386

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 8e-30
 Identities = 42/201 (20%), Positives = 78/201 (38%), Gaps = 24/201 (11%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
           +SL  +D+S      L E       L  ++ S+N +  + D      +LEELN+++N L 
Sbjct: 277 QSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI 330

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            LP        L+ L  S N L+ +P+      +L +L   +N L   P        +++
Sbjct: 331 ELPALPP---RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPE----SVE 380

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L +  + +  +P       +L+ L    N L   P     + +L + +      D  E 
Sbjct: 381 DLRM-NSHLAEVPELPQ---NLKQLHVETNPLREFPDIPESVEDLRMNSE--RVVDPYEF 434

Query: 388 PETFGELTNLKELDLSNNQIH 408
                    L++    ++  H
Sbjct: 435 A--HETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (292), Expect = 3e-28
 Identities = 42/203 (20%), Positives = 71/203 (34%), Gaps = 30/203 (14%)

Query: 246 IPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL-SALPDSISH------ 298
           I         L+E    S+ L  +P     + +      + ++     P           
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 299 -------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
                   R   EL+ +   L+ LP        +L+ L+   N +  LP     + SL  
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQSLKSLLV 118

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
            + +   L  LP        LE L VS+N   +++LPE     + LK +D+ NN +  LP
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNN--QLEKLPE-LQNSSFLKIIDVDNNSLKKLP 169

Query: 412 NTFGRLDKLIKLNLEENPMVIPP 434
           +       L  +    N +   P
Sbjct: 170 DL---PPSLEFIAAGNNQLEELP 189

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)

Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL--- 394
           F+         L+    H + L  +P     + +      + +    +  P   GE    
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGNGEQREM 60

Query: 395 ----------TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
                         EL+L+N  + +LP        L  L    N
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCN 101

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  152 bits (386), Expect = 8e-41
 Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 13/225 (5%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
            +++++DLS   L  +          L L++LS+N L    D +  L  L  L+L +N +
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
           + L        +++ L  + N +S +  S    +    +  + N++  L          +
Sbjct: 93  QELLV----GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 327 QKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
           Q L + LN+I  +          +L HL+  +N ++ +   +     L+ L++SSN   +
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN--KL 203

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
             +   F     +  + L NN++  +         L   +L  N 
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (351), Expect = 4e-36
 Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETL-PDSIGLLDNLK 280
           + E        ++  ++++ L+    S+     N++EL+L+ N L  +    +     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           +L++S N L    D +    +L  LD + N +  L         +++ L    N I  + 
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS 115

Query: 341 TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399
            S G+    +++    N++  L     G  + ++ L++  N  D     E       L+ 
Sbjct: 116 CSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 400 LDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           L+L  N I+ +        KL  L+L  N
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSN 201

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 5e-26
 Identities = 30/278 (10%), Positives = 78/278 (28%), Gaps = 11/278 (3%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +LE ++L    +  +       A L+ + LS+N L  +         +  ++L +N L 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +  ++    NL+  D+ GN            ++      +   +  L      E     
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 328 KLLVPLNKIRFLPTSIGE------MASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNF 381
                      LP    +            L    +E   L            ++     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE- 346

Query: 382 TDMKELP-ETFGELTNLKELDLSNNQI-HALPNTFGRLDKLIKLNLEENPMVIPPVEVVK 439
              + +  +          L+     +   + N      +L     +    +       +
Sbjct: 347 -QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

Query: 440 EGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQ 477
           +    +   + KR+ ++ +E++      +   +    +
Sbjct: 406 QSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 5e-26
 Identities = 49/273 (17%), Positives = 83/273 (30%), Gaps = 8/273 (2%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L+ +DLSS  L F+   F   AG+  +SL NN L +I  ++    NLE  +L  N   
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
                     N ++  V+   +  L   +   C               LP      L+ L
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 327 QK-----LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSN 380
           ++     L    ++   L       A  R +DA   +   +   +         L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE 440
               +++         L            L +       L  L           VE    
Sbjct: 371 -ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNN 473
              A++ +   +  +  L EE   + KL G  +
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 10/139 (7%)

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASL 349
           A+ +   +         + + L     ++     N+++L +  N +  +    +     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 350 RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA 409
             L+   N L+     +  L+ L  L++++N        +      +++ L  +NN I  
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNN------YVQELLVGPSIETLHAANNNISR 113

Query: 410 LPNTFGRLDKLIKLNLEEN 428
           +     R      + L  N
Sbjct: 114 VS--CSRGQGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 22/182 (12%), Positives = 38/182 (20%), Gaps = 5/182 (2%)

Query: 192 EEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI- 250
           E++       L     K    +         L       A  R +         + D + 
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 251 AGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASF 309
                   L      L+            L            L  +      L  L A  
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416

Query: 310 NRLAYLPTNIGHE-LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK 368
            R   +           ++   +  +K   L      +  L         L    AT+ +
Sbjct: 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL--NGEADLALASANATLQE 474

Query: 369 LT 370
           L 
Sbjct: 475 LV 476

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (376), Expect = 1e-40
 Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 13/222 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +LE ++L+   +  +      +  L  + +  N +  I  ++  L NL EL L  + + 
Sbjct: 66  TNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNIS 123

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L  +  L++  N   +    +S+   L  L  + +++  +   I + L +L 
Sbjct: 124 DIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIAN-LTDLY 180

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKE 386
            L +  N+I  +   +  + SL +  A+ N++  +   +  +T L  L + +N  TD+  
Sbjct: 181 SLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP 238

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           L      L+ L  L++  NQI  +      L KL  LN+  N
Sbjct: 239 L----ANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (352), Expect = 4e-37
 Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 9/222 (4%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             +  ++L +            + GL  ++++ + ++ +   IA L +L  L+L  N +E
Sbjct: 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIE 190

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L +L       N+++ +   +++   L  L    N++  L   + + L  L 
Sbjct: 191 DIS-PLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-PLAN-LSQLT 246

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L +  N+I  +  ++ ++  L+ L+   N++  +   +  L+ L  L +++N     E 
Sbjct: 247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLG-NED 303

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
            E  G LTNL  L LS N I  +      L K+   +     
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  136 bits (345), Expect = 4e-36
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 13/222 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
               +  L    +  +      +  +  + ++   +  I   I  L NLE LNL  N + 
Sbjct: 22  AEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT 79

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L  L  L +  NK++ +  ++ +  +L EL  + + ++ +   + + L  + 
Sbjct: 80  DIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-PLAN-LTKMY 135

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKE 386
            L +  N      + +  M  L +L    +++  +   I  LT+L  L+++ N   D+  
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI-- 192

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
                  LT+L       NQI  +      + +L  L +  N
Sbjct: 193 --SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (325), Expect = 2e-33
 Identities = 37/197 (18%), Positives = 82/197 (41%), Gaps = 10/197 (5%)

Query: 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA 291
           G   ++     +  I    A L       L    +  +  +   L+++  L V+G K+++
Sbjct: 1   GAATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVAS 58

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
           +   I +  +L  L+ + N++  +   + + LV L  L +  NKI  +  ++  + +LR 
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDIS-PLSN-LVKLTNLYIGTNKITDIS-ALQNLTNLRE 114

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
           L  + + +  +   +  LT +  LN+ +N             +T L  L ++ +++  + 
Sbjct: 115 LYLNEDNISDISP-LANLTKMYSLNLGANH--NLSDLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 412 NTFGRLDKLIKLNLEEN 428
                L  L  L+L  N
Sbjct: 172 P-IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  123 bits (311), Expect = 2e-31
 Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 13/202 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L  + ++   ++ +      +  L  +SL+ N +E I   +A L +L       N + 
Sbjct: 155 TGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQIT 212

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  +  L  L +  NK++ L   +++   L  L+   N+++ +   +   L  L+
Sbjct: 213 DIT-PVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN-AVKD-LTKLK 268

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN-FTDMK 385
            L V  N+I  +   +  ++ L  L  + N+L       IG LTNL  L +S N  TD++
Sbjct: 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 386 ELPETFGELTNLKELDLSNNQI 407
            L      L+ +   D +N  I
Sbjct: 328 PL----ASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 333 LNKIRFLPTSIGE------MASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
              +  LP  I +      +A           +  +  T  +L ++  L V+     +  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGE--KVAS 58

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
           +      LTNL+ L+L+ NQI  +      L KL  L +  N +    
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS 104

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLL 266
             L+ +++ S  +  +      ++ L  + L+NN L     + I GL NL  L L+ N +
Sbjct: 265 TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 267 ETLPDSIGLLDNLKILDVSGNKLS 290
             +   +  L  +   D +   + 
Sbjct: 324 TDIR-PLASLSKMDSADFANQVIK 346

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  149 bits (379), Expect = 3e-40
 Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 11/229 (4%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +   ++L    ++ +    F  +  L ++ L  N +  I      GL +L  L L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 267 ETLP-DSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELD-ASFNRLAYLPTNIGHEL 323
             +P  +   L  L+ L +  N + ++P    +   SL+ LD     +L Y+       L
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL 195

Query: 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFT 382
            NL+ L + +  I+ +P     +  L  L+   N    +   +   L++L+ L V ++  
Sbjct: 196 FNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-- 252

Query: 383 DMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
            +  +    F  L +L EL+L++N + +LP + F  L  L++L+L  NP
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  145 bits (367), Expect = 2e-38
 Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 13/234 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLE 267
              +V  + RGL  +P+     +  R ++L  N++++I  D+   L +LE L L  N + 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 268 TLPDSI-GLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
            +       L +L  L++  N L+ +P  +  +   L EL    N +  +P+   + + +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 326 LQKL-LVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
           L +L L  L K+ ++       + +L++L+     +  +P  +  L  LE L +S N   
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN--H 229

Query: 384 MKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
             E+   +F  L++LK+L + N+Q+  +  N F  L  L++LNL  N +  +P 
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 2e-19
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 9/157 (5%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +    +  +   LS +P  I    +   L+   N +  +  +    L +L+ L +  N I
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPE-TFGE 393
           R +       +ASL  L+   N L  +P+     L+ L  L + +N   ++ +P   F  
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN--PIESIPSYAFNR 169

Query: 394 LTNLKELDLS-NNQIHALP-NTFGRLDKLIKLNLEEN 428
           + +L  LDL    ++  +    F  L  L  LNL   
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  152 bits (385), Expect = 9e-40
 Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNLLE 267
           S E  D S   L  +P+       + +++L++N L  +   +      L  L++  N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 268 TL-PDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
            L P+    L  LK+L++  N+LS L   + + C +L EL    N +  +  N   +  N
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 326 LQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA---TIGKLTNLEILNVSSNF 381
           L  L +  N +      +  ++ +L+ L    N++  L +    I   ++L+ L +SSN 
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 382 TDMKEL-PETFGELTNLKELDLSNNQIHA-LPNTFG---RLDKLIKLNLEEN 428
             +KE  P  F  +  L  L L+N Q+   L            +  L+L  +
Sbjct: 183 --IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (369), Expect = 1e-37
 Identities = 53/242 (21%), Positives = 95/242 (39%), Gaps = 22/242 (9%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI--PDSIAGLVNLEELNLASN 264
             L  ++L+   +  +  +AF  +  L ++ L  N +          GL N+ E+ L+ N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 265 LLETL-PDSIGLLDNLKILDVSGNKLSAL---PDSISHCRSLVELDASFNRLAYLPTNIG 320
               L  +S  L+ +L+ L +    L  +   P      R+L  LD S N +A +  ++ 
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 321 HELVNLQKL---------LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLT 370
             L  L+ L         L            +  ++ L  L+   N    +P      L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 371 NLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHAL-PNTFGR-LDKLIKLNLEE 427
            L+I+++  N   +  L    F    +LK L+L  N I ++    FG     L +L++  
Sbjct: 561 ELKIIDLGLNN--LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 428 NP 429
           NP
Sbjct: 619 NP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (369), Expect = 1e-37
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 17/236 (7%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
             L+ ++L    L  L +  F     L  + L +N ++ +  +      NL  L+L+ N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 266 LETL-PDSIGLLDNLKILDVSGNKLSALPD---SISHCRSLVELDASFNRLAYLPTNIGH 321
           L +    +   L+NL+ L +S NK+ AL      I    SL +L+ S N++        H
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 322 ELVNLQKLLVPLNKI-RFLPTSIGE---MASLRHLDAHFNELHGLPATIG---KLTNLEI 374
            +  L  L +   ++   L   +       S+R+L    ++L     T     K TNL +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 375 LNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
           L++S N   +  +  ++F  L  L+   L  N I  L  ++   L  +  LNL+ +
Sbjct: 253 LDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (363), Expect = 7e-37
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 22/251 (8%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPD---SIAGLVNLEELNLAS 263
           K+L  +DLS  GL         ++  L+ + LSNN ++ +      I    +L++L L+S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 264 NLLETL-PDSIGLLDNLKILDVSGNKLSALPDSI----SHCRSLVELDASFNRLAYLPTN 318
           N ++   P     +  L  L ++  +L               S+  L  S ++L+     
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 319 I--GHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEI 374
              G +  NL  L +  N +  +   S   +  L +    +N +  L   ++  L N+  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 375 LNVSSNFTDM--------KELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNL 425
           LN+  +FT          K    +F  L  L+ L++ +N I  +  N F  L  L  L+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 426 EENPMVIPPVE 436
             +   +  + 
Sbjct: 361 SNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (362), Expect = 1e-36
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 17/235 (7%)

Query: 209 SLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNLL 266
            L  +D+    +  L PE   ++  L++++L +N L ++   + A   NL EL+L SN +
Sbjct: 50  QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

Query: 267 ETL-PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
           + +  +      NL  LD+S N LS+    +     +L EL  S N++  L +       
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 325 N--LQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG-LPATIG---KLTNLEILNV 377
           N  L+KL +  N+I+   P     +  L  L  +  +L   L   +      T++  L++
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 378 SSN-FTDMKELPETFGEL--TNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
           S++  +       TF  L  TNL  LDLS N ++ +  ++F  L +L    LE N
Sbjct: 230 SNSQLSTT--SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (352), Expect = 2e-35
 Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 25/253 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMS-----LSNNHL-EVIPDSIAGLVNLEELNL 261
            +L+ + LS+               L         L+ N + ++  D+ + L +LE L+L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412

Query: 262 ASNLLETL--PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTN 318
             N +           L+N+  + +S NK   L  +S +   SL  L      L  + ++
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 319 IG--HELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGL---------PATI 366
                 L NL  L +  N I  +    +  +  L  LD   N L  L            +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 367 GKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLN 424
             L++L ILN+ SN F ++    E F +L  LK +DL  N ++ L  + F     L  LN
Sbjct: 533 KGLSHLHILNLESNGFDEIP--VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

Query: 425 LEENPMVIPPVEV 437
           L++N +     +V
Sbjct: 591 LQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  135 bits (341), Expect = 6e-34
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 22/243 (9%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHL----------EVIPDSIAGLVNL 256
             LE   L    ++ L   +   +  +R ++L  +            ++   S   L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 257 EELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPDSISHCR-----SLVELDASFN 310
           E LN+  N +  +  +    L NLK L +S +  S    +           L  L+ + N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFL--PTSIGEMASLRHLDAHFNELHGL-PATIG 367
           +++ + ++    L +L+ L + LN+I           + ++  +   +N+   L   +  
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451

Query: 368 KLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNL 425
            + +L+ L +      ++   P  F  L NL  LDLSNN I  +  +    L+KL  L+L
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

Query: 426 EEN 428
           + N
Sbjct: 512 QHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (327), Expect = 4e-32
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 12/189 (6%)

Query: 254 VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRL 312
           V+ E  + +   L  +PD   L  N+ +L+++ N+L  L   + +    L  LD  FN +
Sbjct: 4   VSHEVADCSHLKLTQVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGL-PATIGKLT 370
           + L   +  +L  L+ L +  N++  L   +     +L  L    N +  +      K  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 371 NLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPN---TFGRLDKLIKLNLE 426
           NL  L++S N  +  K    T  +L NL+EL LSNN+I AL +          L KL L 
Sbjct: 122 NLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 427 ENPM-VIPP 434
            N +    P
Sbjct: 180 SNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (274), Expect = 2e-25
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 22/197 (11%)

Query: 208 KSLEQVDLSS---RGLRFLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLAS 263
            SL+++ L     + +   P  F  +  L ++ LSNN++  +  D + GL  LE L+L  
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 264 NLLETL---------PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLA 313
           N L  L            +  L +L IL++  N    +  +       L  +D   N L 
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

Query: 314 YLPTNIGHELVNLQKLLVPLNKIRFLPTSI--GEMASLRHLDAHFNELHGLPATIG---- 367
            LP ++ +  V+L+ L +  N I  +   +      +L  LD  FN       +I     
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVN 633

Query: 368 --KLTNLEILNVSSNFT 382
               T+  I  +SS++ 
Sbjct: 634 WINETHTNIPELSSHYL 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  152 bits (386), Expect = 1e-39
 Identities = 54/230 (23%), Positives = 87/230 (37%), Gaps = 14/230 (6%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
             L  + L    L   +P+    +  L  + L  N L   IP  ++   NL  ++L++N 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 266 LE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHE 322
           L   +P  IG L+NL IL +S N  S  +P  +  CRSL+ LD + N     +P  +   
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-- 559

Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH---GLPATIGKLTNLEILNVSS 379
                  +            I      +      N L         + +L+     N++S
Sbjct: 560 --KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 380 NFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEEN 428
                     TF    ++  LD+S N +   +P   G +  L  LNL  N
Sbjct: 618 RVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (380), Expect = 6e-39
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 16/234 (6%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIP-DSIAGLVNLEELNLASN 264
            +L  +DLS       +P  FG  + L  ++LS+N+    +P D++  +  L+ L+L+ N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 265 LLE-TLPDSIG-LLDNLKILDVSGNKLS-ALPDSISHC--RSLVELDASFNRLA-YLPTN 318
                LP+S+  L  +L  LD+S N  S  +  ++      +L EL    N     +P  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 319 IGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILN 376
           + +    L  L +  N +   +P+S+G ++ LR L    N L G +P  +  +  LE L 
Sbjct: 414 LSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 377 VSSN-FTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEEN 428
           +  N  T   E+P      TNL  + LSNN++   +P   GRL+ L  L L  N
Sbjct: 473 LDFNDLTG--EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  144 bits (365), Expect = 7e-37
 Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 25/244 (10%)

Query: 208 KSLEQVDLSSRGLR-FLPEAF---GRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLA 262
            SLE +DLS+  +       +        L+ +++S N +   +   ++  VNLE L+++
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 263 SNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNI 319
           SN     +P  +G    L+ LD+SGNKLS     +IS C  L  L+ S N+    +P   
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267

Query: 320 GHELVNLQKLLVPLNKIR-FLPTSI-GEMASLRHLDAHFNELHG-LPATIGKLTNLEILN 376
              L +LQ L +  NK    +P  + G   +L  LD   N  +G +P   G  + LE L 
Sbjct: 268 ---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 377 VSSN-FTDMKELP-ETFGELTNLKELDLSNNQIH-ALPNTFGRL-DKLIKLNLEENPM-- 430
           +SSN F+   ELP +T  ++  LK LDLS N+    LP +   L   L+ L+L  N    
Sbjct: 325 LSSNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 431 VIPP 434
            I P
Sbjct: 383 PILP 386

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  137 bits (348), Expect = 1e-34
 Identities = 60/250 (24%), Positives = 94/250 (37%), Gaps = 34/250 (13%)

Query: 207 GKSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASN 264
            K+LE + L    L   +P        L  +SLSNN L   IP  I  L NL  L L++N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 265 LLE-TLPDSIGLLDNLKILDVSGNKLS---------------------ALPDSISHCRSL 302
                +P  +G   +L  LD++ N  +                          I +    
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 303 VELDASFNRLAY---LPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNE 358
            E   + N L +       +   L       +           +     S+  LD  +N 
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 359 LHG-LPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFG 415
           L G +P  IG +  L ILN+  N  +    +P+  G+L  L  LDLS+N++   +P    
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 416 RLDKLIKLNL 425
            L  L +++L
Sbjct: 702 ALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 2e-32
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 23/236 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE-VIPD--SIAGLVNLEELNLASN 264
             LE + LS+  +      F   A L  + LS N L   +    S+     L+ LN++SN
Sbjct: 77  TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136

Query: 265 LLE-TLPDSIGL-LDNLKILDVSGNKLS-ALPDSI---SHCRSLVELDASFNRLA-YLPT 317
            L+     S GL L++L++LD+S N +S A          C  L  L  S N+++  +  
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD- 195

Query: 318 NIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEIL 375
            +    VNL+ L V  N     +P  +G+ ++L+HLD   N+L G     I   T L++L
Sbjct: 196 -VSR-CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 376 NVSSN-FTDMKELPETFGELTNLKELDLSNNQIH-ALPNT-FGRLDKLIKLNLEEN 428
           N+SSN F     +P     L +L+ L L+ N+    +P+   G  D L  L+L  N
Sbjct: 253 NISSNQFVG--PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  130 bits (330), Expect = 2e-32
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 17/213 (7%)

Query: 228 GRIAGLRLMSLS-NNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286
            ++  + L S   N     +  S+  L  LE L L+++ +           +L  LD+S 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 287 NKLS-ALPD--SISHCRSLVELDASFNRLAY-LPTNIGHELVNLQKLLVPLNKIR-FLPT 341
           N LS  +    S+  C  L  L+ S N L +    + G +L +L+ L +  N I      
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 342 SI---GEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSN-FTDMKELPETFGELTN 396
                     L+HL    N++ G +   + +  NLE L+VSSN F+    +P   G+ + 
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST--GIPF-LGDCSA 224

Query: 397 LKELDLSNNQIH-ALPNTFGRLDKLIKLNLEEN 428
           L+ LD+S N++            +L  LN+  N
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  110 bits (278), Expect = 8e-26
 Identities = 45/208 (21%), Positives = 80/208 (38%), Gaps = 15/208 (7%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
           ++L  + LS+      +P   G    L  + L+ N     IP ++         N  +  
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG- 572

Query: 266 LETLPDSIGLLDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLA-YLPTNIGH 321
                  I      K    +GN L       + ++   +    + +      +      +
Sbjct: 573 --KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630

Query: 322 ELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSS 379
              ++  L +  N +  ++P  IG M  L  L+   N++ G +P  +G L  L IL++SS
Sbjct: 631 -NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 380 N-FTDMKELPETFGELTNLKELDLSNNQ 406
           N       +P+    LT L E+DLSNN 
Sbjct: 690 NKLDG--RIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 4e-18
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDN 278
                      +    + N LE   +  + +  L      N+ S +       +     +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633

Query: 279 LKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKI 336
           +  LD+S N LS  +P  I     L  L+   N ++  +P  +G  L  L  L +  NK+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKL 692

Query: 337 R-FLPTSIGEMASLRHLDAHFNELHG 361
              +P ++  +  L  +D   N L G
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 3e-12
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
            S+  +D+S   L  ++P+  G +  L +++L +N +   IPD +  L  L  L+L+SN 
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691

Query: 266 LE-TLPDSIGLLDNLKILDVSGNKLS 290
           L+  +P ++  L  L  +D+S N LS
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
             L  ++L    +   +P+  G + GL ++ LS+N L+  IP +++ L  L E++L++N 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715

Query: 266 LE-TLPDSIGLLDNLKILDVSGNK 288
           L   +P+  G  +         N 
Sbjct: 716 LSGPIPEM-GQFETFPPAKFLNNP 738

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  147 bits (372), Expect = 3e-39
 Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 11/229 (4%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +   ++L    ++ +   +F  +  L ++ LS NH+  I      GL NL  L L  N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELD-ASFNRLAYLPTNIGHEL 323
            T+P+     L  LK L +  N + ++P    +   SL  LD     RL+Y+       L
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFT 382
            NL+ L + +  +R +P  +  +  L  LD   N L  +   +   L +L+ L +  +  
Sbjct: 185 SNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-- 241

Query: 383 DMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
            ++ +    F  L +L E++L++N +  LP + F  L  L +++L  NP
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  142 bits (360), Expect = 1e-37
 Identities = 57/234 (24%), Positives = 115/234 (49%), Gaps = 13/234 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLE 267
              +V    + LR +P+        RL++L  N +++I  +S   L +LE L L+ N + 
Sbjct: 44  QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 268 TLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVN 325
           T+       L NL  L++  N+L+ +P+    +   L EL    N +  +P+   + + +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 326 LQKL-LVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
           L++L L  L ++ ++       +++LR+L+     L  +P  +  L  L+ L++S N   
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN--H 218

Query: 384 MKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
           +  +   +F  L +L++L +  +QI  +  N F  L  L+++NL  N + ++P 
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  121 bits (306), Expect = 3e-30
 Identities = 49/209 (23%), Positives = 95/209 (45%), Gaps = 12/209 (5%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
           + LE + LS   +R +   AF  +A L  + L +N L  IP+     L  L+EL L +N 
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147

Query: 266 LETLPDSI-GLLDNLKILDVSG-NKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHE 322
           +E++P      + +L+ LD+    +LS + +       +L  L+ +   L  +P      
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTP 205

Query: 323 LVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN 380
           L+ L +L +  N +  +   S   +  L+ L    +++  +       L +L  +N++ N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIH 408
             ++  LP   F  L +L+ + L +N  +
Sbjct: 266 --NLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 38/162 (23%), Positives = 59/162 (36%), Gaps = 30/162 (18%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +    +      L  +PD IS   +   L+   N++  +  N    L +L+ L +  N I
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 337 RFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELT 395
           R +                             L NL  L +  N   +  +P   F  L+
Sbjct: 101 RTIE----------------------IGAFNGLANLNTLELFDN--RLTTIPNGAFVYLS 136

Query: 396 NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM--VIPP 434
            LKEL L NN I ++P   F R+  L +L+L E      I  
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (363), Expect = 5e-39
 Identities = 56/235 (23%), Positives = 97/235 (41%), Gaps = 21/235 (8%)

Query: 208 KSLEQVDLSSR----GLRFLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLA 262
             L  + +       G   +P A  ++  L  + +++ ++   IPD ++ +  L  L+ +
Sbjct: 76  PYLNFLYIGGINNLVGP--IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 263 SNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVE-LDASFNRLA-YLPTN 318
            N L  TLP SI  L NL  +   GN++S A+PDS      L   +  S NRL   +P  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 319 IGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILN 376
             +  +NL  + +  N +        G   + + +    N L   L   +G   NL  L+
Sbjct: 194 FAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250

Query: 377 VSSN-FTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENP 429
           + +N       LP+   +L  L  L++S N +   +P   G L +        N 
Sbjct: 251 LRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (353), Expect = 1e-37
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 17/218 (7%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLAS-NLLE-TLPDSIGLLD 277
           L +   +   +  + LS  +L     IP S+A L  L  L +   N L   +P +I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 278 NLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNK 335
            L  L ++   +S A+PD +S  ++LV LD S+N L+  LP +I   L NL  +    N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNR 160

Query: 336 IR-FLPTSIGEMASL-RHLDAHFNELHG-LPATIGKLTNLEILNVSSN-FTDMKELPETF 391
           I   +P S G  + L   +    N L G +P T   L NL  +++S N      +    F
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG--DASVLF 217

Query: 392 GELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEEN 428
           G   N +++ L+ N +   L    G    L  L+L  N
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 4e-35
 Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 16/204 (7%)

Query: 237 SLSNNHLE-VIPDSIAGLVNLEELNLASNLLE---TLPDSIGLLDNLKILDVSG-NKLS- 290
              N     V+ D+      +  L+L+   L     +P S+  L  L  L + G N L  
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 291 ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMAS 348
            +P +I+    L  L  +   ++  +P  +   +  L  L    N +   LP SI  + +
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 349 LRHLDAHFNELHG-LPATIGKLTNL-EILNVSSN-FTDMKELPETFGELTNLKELDLSNN 405
           L  +    N + G +P + G  + L   + +S N  T   ++P TF  L NL  +DLS N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANL-NLAFVDLSRN 207

Query: 406 QIH-ALPNTFGRLDKLIKLNLEEN 428
            +       FG      K++L +N
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKN 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  142 bits (360), Expect = 7e-39
 Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 12/225 (5%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD 271
                +GL+ +P      A  + + L  N +  +P  S     NL  L L SN+L  +  
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 272 SI-GLLDNLKILDVSGN-KLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
           +    L  L+ LD+S N +L ++  +       L  L      L  L   +   L  LQ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 329 LLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKE 386
           L +  N ++ LP     ++ +L HL  H N +  +P      L +L+ L +  N   +  
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN--RVAH 191

Query: 387 LPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           +    F +L  L  L L  N + ALP      L  L  L L +NP
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  117 bits (294), Expect = 1e-29
 Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 10/208 (4%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL- 265
           + +++ L    +  +P  +F     L ++ L +N L  I  +   GL  LE+L+L+ N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           L ++  +    L  L  L +    L  L   +     +L  L    N L  LP +   +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 324 VNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNF 381
            NL  L +  N+I  +P      + SL  L  H N +  +       L  L  L + +N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN- 211

Query: 382 TDMKELPE-TFGELTNLKELDLSNNQIH 408
            ++  LP      L  L+ L L++N   
Sbjct: 212 -NLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 27/154 (17%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +           L A+P  I    +   +    NR++++P        NL  L +  N +
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL 68

Query: 337 RFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP-ETFGELT 395
             +                        A    L  LE L++S N   ++ +   TF  L 
Sbjct: 69  ARID----------------------AAAFTGLALLEQLDLSDN-AQLRSVDPATFHGLG 105

Query: 396 NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
            L  L L    +  L    F  L  L  L L++N
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  146 bits (371), Expect = 8e-39
 Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            +L  + L S  L+ +P   F  ++ L  + +S N + ++ D +   L NL+ L +  N 
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHEL 323
           L  +       L++L+ L +    L+++P  ++SH   L+ L      +  +       L
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 324 VNLQKL-LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNF 381
             L+ L +     +  +  +     +L  L      L  +P   +  L  L  LN+S N 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN- 258

Query: 382 TDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
             +  +      EL  L+E+ L   Q+  +    F  L+ L  LN+  N +  +  
Sbjct: 259 -PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  143 bits (363), Expect = 8e-38
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 9/234 (3%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
               +DL    ++ L +  F     L  + L+ N +  +       L NL  L L SN L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELV 324
           + +P  +   L NL  LD+S NK+  L D +     +L  L+   N L Y+       L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 325 NLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFT 382
           +L++L +    +  +PT ++  +  L  L      ++ +   +  +L  L++L +S    
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW-P 211

Query: 383 DMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMV-IPP 434
            +  +        NL  L +++  + A+P      L  L  LNL  NP+  I  
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 9e-33
 Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 12/230 (5%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD 271
           V    +    +PE        RL+ L  N ++ +  D  A   +LEEL L  N++  +  
Sbjct: 16  VLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 272 SI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
                L NL+ L +  N+L  +P  + +   +L +LD S N++  L   +  +L NL+ L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 330 LVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN-FTDMKE 386
            V  N + ++       + SL  L      L  +P   +  L  L +L +       ++ 
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR- 192

Query: 387 LPETFGELTNLKELDLS-NNQIHALPNTFGRLDKLIKLNLEENPMV-IPP 434
              +F  L  LK L++S    +  +         L  L++    +  +P 
Sbjct: 193 -DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 1e-30
 Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLL 266
           +L+ +++    L ++   AF  +  L  ++L   +L  IP  +++ L  L  L L    +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 267 ETLPDSI-GLLDNLKILDVSGNK-LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
             + D     L  LK+L++S    L  +  +  +  +L  L  +   L  +P      LV
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 325 NLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
            L+ L +  N I  +  S+  E+  L+ +     +L  +                     
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE-------------------- 288

Query: 384 MKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
               P  F  L  L+ L++S NQ+  L  + F  +  L  L L+ NP
Sbjct: 289 ----PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 1e-26
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 9/177 (5%)

Query: 258 ELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLP 316
            +         +P+  G+    ++LD+  N++  L  D  +    L EL+ + N ++ + 
Sbjct: 15  AVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 317 TNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEI 374
               + L NL+ L +  N+++ +P  +   +++L  LD   N++  L   +   L NL+ 
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 375 LNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           L V  N  D+  +    F  L +L++L L    + ++P      L  LI L L    
Sbjct: 133 LEVGDN--DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 81.3 bits (201), Expect = 1e-16
 Identities = 34/161 (21%), Positives = 57/161 (35%), Gaps = 29/161 (18%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
              + +     +  A+P+ I        LD   NR+  L  +      +L++L +  N +
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV 68

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELT 395
             +       + +LR L    N L  +P                           F  L+
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIP------------------------LGVFTGLS 104

Query: 396 NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMV-IPP 434
           NL +LD+S N+I  L    F  L  L  L + +N +V I  
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNL 265
             L  ++LS   +  +       +  L+ + L    L V+   +  GL  L  LN++ N 
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLS 290
           L TL +S+   + NL+ L +  N L+
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  147 bits (373), Expect = 1e-38
 Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 15/226 (6%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
             L  + L    L  LP   F     L  +S+SNN+LE I D       +L+ L L+SN 
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
           L  +     L+ +L   +VS N LS L   I+    + ELDAS N +  +   +    V 
Sbjct: 183 LTHVDL--SLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPV---NVE 233

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDM 384
           L  L +  N +      +     L  +D  +NEL  +      K+  LE L +S+N   +
Sbjct: 234 LTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN--RL 290

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
             L      +  LK LDLS+N +  +     + D+L  L L+ N +
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  146 bits (370), Expect = 4e-38
 Identities = 48/243 (19%), Positives = 98/243 (40%), Gaps = 27/243 (11%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            + + V   +  +R LP         + L++L++  +E I     A    +++L +  N 
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110

Query: 266 LETLPDSIGL-LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           +  LP  +   +  L +L +  N LS+LP  I  +   L  L  S N L  +  +     
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

Query: 324 VNLQKLLVPLNKIRFLP-----------------TSIGEMASLRHLDAHFNELHGLPATI 366
            +LQ L +  N++  +                  +++    ++  LDA  N ++ +    
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-- 228

Query: 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNL 425
                L IL +  N  ++ +          L E+DLS N++  +  + F ++ +L +L +
Sbjct: 229 PVNVELTILKLQHN--NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 426 EEN 428
             N
Sbjct: 286 SNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  140 bits (354), Expect = 6e-36
 Identities = 50/225 (22%), Positives = 100/225 (44%), Gaps = 16/225 (7%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            +++++ +    +R+LP   F  +  L ++ L  N L  +P  I      L  L++++N 
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
           LE + D       +L+ L +S N+L+ +  S+    SL   + S+N L+ L        +
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLA-----IPI 211

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
            +++L    N I  +   +     L  L    N L      +     L  +++S N  ++
Sbjct: 212 AVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN--EL 266

Query: 385 KELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           +++    F ++  L+ L +SNN++ AL      +  L  L+L  N
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (319), Expect = 2e-31
 Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 15/221 (6%)

Query: 212 QVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETLP 270
            +D+ ++ + +       +   ++++  N+ +  +P ++      +E LNL    +E + 
Sbjct: 33  HIDMQTQDV-YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 271 DSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
                    ++ L +  N +  LP  +  +   L  L    N L+ LP  I H    L  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

Query: 329 LLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           L +  N +  +         SL++L    N L  +   +  + +L   NVS N      L
Sbjct: 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN------L 203

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
             T      ++ELD S+N I+ +        +L  L L+ N
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHN 242

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 3e-29
 Identities = 35/205 (17%), Positives = 82/205 (40%), Gaps = 18/205 (8%)

Query: 235 LMSLSNNHLEVIPDSI------AGLVNLEELNLASNLLETLPDSI-GLLDNLKILDVSGN 287
                + H+++    +        L N + +   ++ +  LP ++      +++L+++  
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 288 KLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GE 345
           ++  +     ++  ++ +L   FN + YLP ++   +  L  L++  N +  LP  I   
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 346 MASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
              L  L    N L  +   T    T+L+ L +SSN   +  +      + +L   ++S 
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--RLTHVD--LSLIPSLFHANVSY 201

Query: 405 NQIHALPNTFGRLDKLIKLNLEENP 429
           N +  L         + +L+   N 
Sbjct: 202 NLLSTLAI----PIAVEELDASHNS 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 2e-18
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELN 260
           ++      L  + L    L           GL  + LS N LE I       +  LE L 
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 261 LASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG 320
           +++N L  L      +  LK+LD+S N L  +  +      L  L    N +  L  +  
Sbjct: 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 343

Query: 321 HELVNLQKL 329
                L+ L
Sbjct: 344 --HHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364
           +         + +N+ ++ V     +    +  +       + + + +    + +  LPA
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 365 TI-GKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLI 421
            +      +E+LN++     ++E+    F     +++L +  N I  LP + F  +  L 
Sbjct: 69  ALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 422 KLNLEEN 428
            L LE N
Sbjct: 127 VLVLERN 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  140 bits (355), Expect = 5e-38
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 15/237 (6%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLE 267
           S  ++  +S+GL  +P      +    + L +N L+ +P  +   L  L +L+L+SN L 
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 268 TLPDSIGL---LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP-TNIGHEL 323
                        +LK LD+S N +  +  +      L  LD   + L  +   ++   L
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 324 VNLQKLLVPLNKIRFLPTSI-GEMASLRHLD-AHFNELHGLPATI-GKLTNLEILNVSSN 380
            NL  L +     R     I   ++SL  L  A  +        I  +L NL  L++S  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
              +++L    F  L++L+ L++S+N   +L    +  L+ L  L+   N +     
Sbjct: 186 --QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  137 bits (348), Expect = 4e-37
 Identities = 63/233 (27%), Positives = 102/233 (43%), Gaps = 14/233 (6%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI---PDSIAGLVNLEELNLASN 264
           S  +++L S  L+ LP   F ++  L  +SLS+N L        S  G  +L+ L+L+ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPDS--ISHCRSLVELDASFNRLAYLPTNIGHE 322
            + T+  +   L+ L+ LD   + L  + +       R+L+ LD S          I + 
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 323 LVNLQKLLVPLNKI--RFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSS 379
           L +L+ L +  N     FLP    E+ +L  LD    +L  L       L++L++LN+S 
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 380 NFTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRL-DKLIKLNLEENP 429
           N  +   L    +  L +L+ LD S N I              L  LNL +N 
Sbjct: 209 N--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (278), Expect = 2e-27
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 31/208 (14%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA--GLVNLEELNLASNL 265
            SL+ +DLS  G+  +   F  +  L  +   +++L+ + +      L NL  L+++   
Sbjct: 78  TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 266 LETLPDSI-GLLDNLKILDVSGNKL--SALPDSISHCRSLVELDASFNRLAYLPTNIGHE 322
                + I   L +L++L ++GN    + LPD  +  R+L  LD S  +L  L     + 
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT 382
           L +LQ L +  N    L                             L +L++L+ S N  
Sbjct: 198 LSSLQVLNMSHNNFFSLD----------------------TFPYKCLNSLQVLDYSLN-- 233

Query: 383 DMKELPE-TFGEL-TNLKELDLSNNQIH 408
            +    +       ++L  L+L+ N   
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 27/135 (20%)

Query: 297 SHCR-SLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAH 355
           S C  S  E+  +   L  +PT I     +  +L +  NK++ LP               
Sbjct: 3   SRCSCSGTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLP--------------- 44

Query: 356 FNELHGLPATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALPNTF 414
                       KLT L  L++SSN    K    ++    T+LK LDLS N +  + + F
Sbjct: 45  -------HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97

Query: 415 GRLDKLIKLNLEENP 429
             L++L  L+ + + 
Sbjct: 98  LGLEQLEHLDFQHSN 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  145 bits (368), Expect = 1e-37
 Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 13/217 (5%)

Query: 224 PEAFGRIAGLRLMSLSNNHL---EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLK 280
             +   +  L  + LS N L        S  G  +L+ L+L+ N + T+  +   L+ L+
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 281 ILDVSGNKLSALPDS--ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR- 337
            LD   + L  + +       R+L+ LD S          I + L +L+ L +  N  + 
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 338 -FLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSN-FTDMKELPETFGEL 394
            FLP    E+ +L  LD    +L  L P     L++L++LN+S N F         +  L
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCL 517

Query: 395 TNLKELDLSNNQIHAL-PNTFGRL-DKLIKLNLEENP 429
            +L+ LD S N I              L  LNL +N 
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (354), Expect = 7e-36
 Identities = 50/235 (21%), Positives = 91/235 (38%), Gaps = 14/235 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN---L 265
             + ++L +      P    ++  L+ ++ ++N       S   L +LE L+L+ N    
Sbjct: 305 GWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELV 324
                 S     +LK LD+S N +  +  +      L  LD   + L  +   ++   L 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 325 NLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN- 380
           NL  L +     R         ++SL  L    N      LP    +L NL  L++S   
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPP 434
                  P  F  L++L+ L++S+N   +L    +  L+ L  L+   N ++   
Sbjct: 482 LEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  139 bits (352), Expect = 1e-35
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 16/228 (7%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNLLETL-P 270
                     +P+        + + LS N L  +   S      L+ L+L+   ++T+  
Sbjct: 12  YQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 271 DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
            +   L +L  L ++GN + +L   + S   SL +L A    LA L       L  L++L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 330 LVPLNKIRFL--PTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEI----LNVSSNFT 382
            V  N I+    P     + +L HLD   N++  +    +  L  + +    L++S N  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP- 188

Query: 383 DMKELPETFGELTNLKELDLSNNQI--HALPNTFGRLDKLIKLNLEEN 428
            M  +     +   L +L L NN    + +      L  L    L   
Sbjct: 189 -MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  137 bits (346), Expect = 7e-35
 Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 16/235 (6%)

Query: 209 SLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLL 266
           S + +DLS   LR L   +F     L+++ LS   ++ +   +   L +L  L L  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 267 ETL-PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYL--PTNIGHE 322
           ++L   +   L +L+ L      L++L    I H ++L EL+ + N +     P    + 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN- 147

Query: 323 LVNLQKLLVPLNKIRFL-PTSIGEMASLR----HLDAHFNELHGLPATIGKLTNLEILNV 377
           L NL+ L +  NKI+ +  T +  +  +      LD   N ++ +     K   L  L +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 378 SSNFTDMKELPETFGELTNLKELDLSNNQIHALPN----TFGRLDKLIKLNLEEN 428
            +NF  +  +      L  L+   L   +     N        L+ L  L +EE 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (317), Expect = 4e-31
 Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 22/241 (9%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNL 265
             L  + L+   ++ L   AF  ++ L+ +     +L  +    I  L  L+ELN+A NL
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 266 LETL--PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSL----VELDASFNRLAYLPTN 318
           +++   P+    L NL+ LD+S NK+ ++    +     +    + LD S N + ++   
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 319 IGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHGL-------PATIGKL 369
              E+  L KL +  N      + T I  +A L        E            + +  L
Sbjct: 196 AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 370 TNLEILNVSSNFTDMK--ELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
            NL I      + D    ++ + F  LTN+    L +  I  + + F        L L  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVN 313

Query: 428 N 428
            
Sbjct: 314 C 314

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (301), Expect = 6e-29
 Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 33/209 (15%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS--IAGLVNLEELNLASNL 265
            SL+ +DLS  G+  +   F  +  L  +   +++L+ + +      L NL  L+++   
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 266 LETL-PDSIGLLDNLKILDVSGNKLSA--LPDSISHCRSLVELDASFNRLAYLPTNIGHE 322
                      L +L++L ++GN      LPD  +  R+L  LD S  +L  L       
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------ 486

Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSN- 380
                            PT+   ++SL+ L+   N    L       L +L++L+ S N 
Sbjct: 487 -----------------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 381 FTDMKELPETFGEL-TNLKELDLSNNQIH 408
               K   +      ++L  L+L+ N   
Sbjct: 530 IMTSK--KQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 1e-28
 Identities = 44/238 (18%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 209 SLEQVDLSS--RGLRFLPEAFGRIAGLRLMSLSNNHL-------EVIPDSIAGLVNLEEL 259
            L ++ L +    L  +      +AGL +  L            +    ++ GL NL   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 260 NLASNLLET----LPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL 315
                 L+     + D    L N+    +    +  + D  S+      L+    +    
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQF 319

Query: 316 PTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL---PATIGKLTNL 372
           PT     L  L               S  ++ SL  LD   N L        +    T+L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGN----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 373 EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL--PNTFGRLDKLIKLNLEEN 428
           + L++S N   +  +   F  L  L+ LD  ++ +  +   + F  L  LI L++   
Sbjct: 376 KYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (287), Expect = 4e-27
 Identities = 43/242 (17%), Positives = 93/242 (38%), Gaps = 24/242 (9%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEV--IPDSIAGLVNLEELNLASN 264
            SL+++      L  L     G +  L+ +++++N ++   +P+  + L NLE L+L+SN
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 265 LLETL-PDSIGLLDNLKI----LDVSGNKLSALPDSISHCRSLVELDASFNRLAY-LPTN 318
            ++++    + +L  + +    LD+S N ++ +         L +L    N  +  +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 319 IGHELVNLQKLLVPLNKIR----FLPTSIGEMASLRHLDAHFNELHGL-------PATIG 367
               L  L+   + L + R            +  L +L      L  L            
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLE 426
            LTN+   ++ S    ++ + + F      + L+L N +    P      L +L   + +
Sbjct: 280 CLTNVSSFSLVSV--TIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 427 EN 428
             
Sbjct: 337 GG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 2e-24
 Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 15/208 (7%)

Query: 208 KSLEQVDLSSRGLRFL--PEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASN 264
           + LE +D     L+ +     F  +  L  + +S+ H          GL +LE L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 265 LLET--LPDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGH 321
             +   LPD    L NL  LD+S  +L  L P + +   SL  L+ S N    L T    
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 322 ELVNLQKLLVPLNKIRFLPTSI--GEMASLRHLDAHFNELHG---LPATIGKLTNLEILN 376
            L +LQ L   LN I            +SL  L+   N+        + +  + +   L 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 377 VSSNFTDMK-ELPETFGELTNLKELDLS 403
           V      M+   P     +  +  L+++
Sbjct: 576 VEVE--RMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 357 NELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHAL-PNTF 414
              + +P  +    + + L++S N          +F     L+ LDLS  +I  +    +
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 415 GRLDKLIKLNLEENP 429
             L  L  L L  NP
Sbjct: 73  QSLSHLSTLILTGNP 87

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  145 bits (367), Expect = 1e-37
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 13/232 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD---SIAGLVNLEELNLASN 264
             L+ + L+             +  L  + LS N L        S  G  +L  L+L+ N
Sbjct: 328 PFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPD--SISHCRSLVELDASFNRLAYLPTNIGHE 322
               +  +   L+ L+ LD   + L  + +  +      L+ LD S+         I   
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 323 LVNLQKLLVPLNKIR--FLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSS 379
           L +L  L +  N  +   L        +L  LD    +L  +       L  L++LN+S 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 380 NFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           N   +  L    + +L +L  LD S N+I             L   NL  N 
Sbjct: 507 NN--LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (354), Expect = 8e-36
 Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 16/228 (7%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-P 270
                + L  +P+        + + LS N L+++   S +    L+ L+L+   +ET+  
Sbjct: 16  YQCMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 271 DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
            +   L +L  L ++GN + +  P S S   SL  L A   +LA L +    +L+ L+KL
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 330 LVPLNKIRF--LPTSIGEMASLRHLDAHFNELHGLPATI-----GKLTNLEILNVSSNFT 382
            V  N I    LP     + +L H+D  +N +  +                 L++S N  
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP- 192

Query: 383 DMKELPETFGELTNLKELDLSNNQI--HALPNTFGRLDKLIKLNLEEN 428
            +  + +   +   L EL L  N    + +      L  L    L   
Sbjct: 193 -IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  133 bits (337), Expect = 1e-33
 Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 43/263 (16%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNL 265
             L+ +DLS   +  +  +A+  +  L  + L+ N +    P S +GL +LE L      
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 266 LETLP-DSIGLLDNLKILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHE 322
           L +L    IG L  LK L+V+ N +    LP   S+  +LV +D S+N +  +  N    
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 323 LVNLQKLLVPL----NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILN 376
           L    ++ + L    N I F+     +   L  L    N      +   +  L  L +  
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 377 VSSN---------------FTDMKEL----------------PETFGELTNLKELDLSNN 405
           +                     + ++                   F  L N+  + L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 406 QIHALPNTFGRLDKLIKLNLEEN 428
            I  L +   +  K   L++   
Sbjct: 296 SIKYLED-VPKHFKWQSLSIIRC 317

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  128 bits (325), Expect = 5e-32
 Identities = 48/238 (20%), Positives = 83/238 (34%), Gaps = 19/238 (7%)

Query: 209 SLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLL 266
           S + +DLS   L+ L   +F   + L+ + LS   +E I   +  GL +L  L L  N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 267 ETL-PDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYL--PTNIGHE 322
           ++  P S   L +L+ L     KL++L    I    +L +L+ + N +     P    + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN- 151

Query: 323 LVNLQKLLVPLNKIRFLPTSI-----GEMASLRHLDAHFNELHGLPATIGKLTNLEILNV 377
           L NL  + +  N I+ +  +              LD   N +  +     +   L  L +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 378 SSNFTDMKELPETFGELTNLKELDLSNNQIHALPN-------TFGRLDKLIKLNLEEN 428
             NF     +      L  L    L   +     N           L  +        
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (305), Expect = 2e-29
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 34/245 (13%)

Query: 200 GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA--GLVNLE 257
               +    SL  +DLS  G   +   F  +  L+ +   ++ L+ + +  A   L  L 
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 258 ELNLASNLLETLPDSI-GLLDNLKILDVSGNKLSA--LPDSISHCRSLVELDASFNRLAY 314
            L+++    +   D I   L +L  L ++GN      L +  ++  +L  LD S  +L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 315 LPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPATIGKLTNLE 373
           +   +   L  LQ L +  N + FL +S   ++ SL  LD  FN +              
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK---------- 537

Query: 374 ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP 433
                                 +L   +L+NN +  +        K ++   E+   ++ 
Sbjct: 538 --------------GILQHFPKSLAFFNLTNNSVACICE----HQKFLQWVKEQKQFLVN 579

Query: 434 PVEVV 438
             ++ 
Sbjct: 580 VEQMT 584

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  120 bits (302), Expect = 4e-29
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 259 LNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPT 317
                  L  +PD   +  + K +D+S N L  L   S S+   L  LD S   +  +  
Sbjct: 16  YQCMDQKLSKVPD--DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED 73

Query: 318 NIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEIL 375
              H L +L  L++  N I+   P S   + SL +L A   +L  L +  IG+L  L+ L
Sbjct: 74  KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 376 NVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRL----DKLIKLNLEENPM 430
           NV+ NF    +LP  F  LTNL  +DLS N I  +  N    L       + L++  NP+
Sbjct: 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193

Query: 431 -VIPP 434
             I  
Sbjct: 194 DFIQD 198

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 7e-26
 Identities = 39/239 (16%), Positives = 83/239 (34%), Gaps = 24/239 (10%)

Query: 208 KSLEQVDLSSRGLRFL--PEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNL----EELN 260
            +L++++++   +     P  F  +  L  + LS N+++ I    +  L         L+
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 261 LASNLLETLPDSIGLLDNLKILDVSGNKLSA--LPDSISHCRSLVELD------ASFNRL 312
           ++ N ++ + D       L  L + GN  S+  +   + +   L               L
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFL---PTSIGEMASLRHLDAHFNELHGLPATIGKL 369
                +I   L ++      L               +A++  +      +  L   + K 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKH 306

Query: 370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
              + L++      +K+ P    +L  LK L L+ N+   +      L  L  L+L  N
Sbjct: 307 FKWQSLSIIRC--QLKQFP--TLDLPFLKSLTLTMNKGS-ISFKKVALPSLSYLDLSRN 360

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.4 bits (217), Expect = 2e-18
 Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 12/143 (8%)

Query: 293 PDSISHCRSLVE---LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMAS 348
           P S++ C  +V          +L+ +P +I     + + + +  N ++ L   S    + 
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSE 57

Query: 349 LRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQ 406
           L+ LD    E+  +       L +L  L ++ N        P +F  LT+L+ L     +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--SPGSFSGLTSLENLVAVETK 115

Query: 407 IHALP-NTFGRLDKLIKLNLEEN 428
           + +L     G+L  L KLN+  N
Sbjct: 116 LASLESFPIGQLITLKKLNVAHN 138

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  139 bits (352), Expect = 2e-37
 Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 34/250 (13%)

Query: 209 SLEQVDLSSRGLRFLPE----------------------AFGRIAGLRLMSLSNNHLEVI 246
            L  V  S  GL  +P+                       F  +  L  + L NN +  I
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 247 PDSI-AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVE 304
                A LV LE L L+ N L+ LP+   +   L+ L V  N+++ +  S+ +    ++ 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIV 149

Query: 305 LDASFNRL--AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL 362
           ++   N L  + +       +  L  + +    I  +P  +    SL  L    N++  +
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV 207

Query: 363 PA-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKL 420
            A ++  L NL  L +S N   +  +   +     +L+EL L+NN++  +P        +
Sbjct: 208 DAASLKGLNNLAKLGLSFN--SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265

Query: 421 IKLNLEENPM 430
             + L  N +
Sbjct: 266 QVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (326), Expect = 9e-34
 Identities = 44/236 (18%), Positives = 102/236 (43%), Gaps = 21/236 (8%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
           K+L  + L +  +  + P AF  +  L  + LS N L+ +P+ +     L+EL +  N +
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEI 133

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHE 322
             +  S+   L+ + ++++  N L +      +    + L  +  +   +  +P  +   
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--- 190

Query: 323 LVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN 380
             +L +L +  NKI  +   S+  + +L  L   FN +  +   ++    +L  L++++N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALPNT-------FGRLDKLIKLNLEENP 429
              + ++P    +   ++ + L NN I A+ +          +      ++L  NP
Sbjct: 251 --KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (309), Expect = 2e-31
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 15/211 (7%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI---PDSIAGLVNLEELNLAS 263
           K+L+++ +    +  + +  F  +  + ++ L  N L+       +  G+  L  + +A 
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

Query: 264 NLLETLPDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHE 322
             + T+P   GL  +L  L + GNK++ +   S+    +L +L  SFN ++ +       
Sbjct: 181 TNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238

Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT-------IGKLTNLEIL 375
             +L++L +  NK+  +P  + +   ++ +  H N +  + +          K  +   +
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 376 NVSSNFTDMKELPE-TFGELTNLKELDLSNN 405
           ++ SN     E+   TF  +     + L N 
Sbjct: 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 6e-15
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 29/160 (18%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337
           +L+++  S   L  +P  +        LD   N++  +       L NL  L++  NKI 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNL 397
            +                       P     L  LE L +S N   +KELPE       L
Sbjct: 90  KIS----------------------PGAFAPLVKLERLYLSKN--QLKELPE--KMPKTL 123

Query: 398 KELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVE 436
           +EL +  N+I  +  + F  L+++I + L  NP+    +E
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  142 bits (360), Expect = 1e-36
 Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 11/231 (4%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSL--SNNHLEVI-PDSIAGLVNLEELNLASN 264
           SL            +    F  +  + + S+    ++   I  ++      L+EL+L + 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRL-AYLPTNIGHE 322
            L  LP  +  L  LK L +S NK   L   S S+  SL  L    N     L T     
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 323 LVNLQKLLVPLNKIRFLPTSIGE---MASLRHLDAHFNELHGLPA-TIGKLTNLEILNVS 378
           L NL++L +  + I        +   ++ L+ L+  +NE   L      +   LE+L+++
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 379 SNFTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
                +K+    F  L  LK L+LS++ +       F  L  L  LNL+ N
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  139 bits (353), Expect = 8e-36
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 18/247 (7%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHL--EVIPDSIAGLVNLEELNLASN 264
            +L+++ LS+     L + +      L  +S+  N    E+    +  L NL EL+L+ +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 265 LLETLPDSIGL---LDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYL-PTNI 319
            +ET          L +L+ L++S N+  +L  ++   C  L  LD +F RL      + 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 320 GHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGL----PATIGKLTNLEI 374
              L  L+ L +  + +          + +L+HL+   N           ++  L  LEI
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 375 LNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVI 432
           L +S    D+  +    F  L  +  +DLS+N++ +        L  +  LNL  N + I
Sbjct: 481 LVLSFC--DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISI 537

Query: 433 PPVEVVK 439
               ++ 
Sbjct: 538 ILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (348), Expect = 5e-35
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 18/237 (7%)

Query: 208 KSLEQVDLS--SRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP---DSIAGLVNLEELNLA 262
            SL  + +   ++ L         +  LR + LS++ +E        +  L +L+ LNL+
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 263 SNLLETL-PDSIGLLDNLKILDVSGNKLSALPD--SISHCRSLVELDASFNRLAYLPTNI 319
            N   +L  ++      L++LD++  +L          +   L  L+ S + L      +
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 320 GHELVNLQKLLVPLNKIRFL----PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEI 374
              L  LQ L +  N           S+  +  L  L   F +L  +       L  +  
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 375 LNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENP 429
           +++S N  T      E    L  +  L+L++N I  + P+    L +   +NL +NP
Sbjct: 505 VDLSHNRLTSSS--IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (347), Expect = 6e-35
 Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 13/234 (5%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSL--SNNHLEVIPDSIAGLVNLEELNLASN 264
           + L+ +D  +  + +L  E    +     +SL  + N +  I          + LN    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 265 --LLETLPDSIGL-LDNLKILDVSGNKLSALPDSI---SHCRSLVELDASFNRLAYLPTN 318
             LL          + +L +          +  ++       S+  ++   +    + +N
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 319 IGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNV 377
             H    LQ+L +    +  LP+ +  +++L+ L    N+   L   +     +L  L++
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332

Query: 378 SSNFTDMKELPETFGELTNLKELDLSNNQIHALP---NTFGRLDKLIKLNLEEN 428
             N   ++        L NL+ELDLS++ I            L  L  LNL  N
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (334), Expect = 3e-33
 Identities = 39/231 (16%), Positives = 84/231 (36%), Gaps = 11/231 (4%)

Query: 209 SLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLL 266
           S E ++ S   L  +    F R+  L  + L+   +  I  D+      L+ L L +N L
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELV 324
             + ++       LK L      +S++    + + ++L  L    N ++ +    G    
Sbjct: 94  IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 325 NLQKLLVPLNKIRFL-PTSIGEMASLRH--LDAHFNELHGLPATIGKLTNLEILNVSSNF 381
            L+ L    N I +L    +  +    +  L+ + N++ G+          + LN     
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 382 TDMKELPE-TFGELTNLKELDLSNNQIHAL-PNTFGRLDK--LIKLNLEEN 428
             +          + +L      +     + P  F  L +  +  +NL+++
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  127 bits (321), Expect = 2e-31
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 11/207 (5%)

Query: 237 SLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSAL-PD 294
           +  N  L  IP ++    + E L  + N+L T+   +   L NL  LD++  ++  +  D
Sbjct: 18  NCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLD 353
           +      L  L  + N L ++          L+ L      I  +    +    +L  L 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 354 AHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLK--ELDLSNNQIHA 409
              N +  +          L++L+  +N   +  L  E    L       L+L+ N I  
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA--IHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 410 LPNTFGRLDKLIKLNLEENPMVIPPVE 436
           +            LN      ++   +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 2e-30
 Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 14/213 (6%)

Query: 208 KSLEQVDLSS---RGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLAS 263
           ++L ++DLS                ++ L+ ++LS N    +  ++      LE L+LA 
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 264 NLLETLPD--SIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYL---PT 317
             L+          L  LK+L++S + L    + +     +L  L+   N         T
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 318 NIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILN 376
           N    L  L+ L++    +  +   +   +  + H+D   N L               LN
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLN 529

Query: 377 VSSNFTDMKEL-PETFGELTNLKELDLSNNQIH 408
           ++SN   +  + P     L+  + ++L  N + 
Sbjct: 530 LASNH--ISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (264), Expect = 3e-24
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL 339
           K  +     L+ +P ++    S   L+ SFN L  +       L+NL  L +   +I ++
Sbjct: 15  KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 340 -PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
              +      L  L    N L  +    +     L+ L        +  +          
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG--ISSIDFIPLHNQKT 130

Query: 397 LKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
           L+ L L +N I ++        +KL  L+ + N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 37/208 (17%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHL----EVIPDSIAGLVNLEELNLA 262
             L+ ++LS   L     + F  +  L+ ++L  NH         +S+  L  LE L L+
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 263 SNLLETLP-DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIG 320
              L ++   +   L  +  +D+S N+L++   +++SH + +  L+ + N ++ +     
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL---- 539

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
                              P+ +  ++  R ++   N L     T   +  LE      N
Sbjct: 540 -------------------PSLLPILSQQRTINLRQNPLDC---TCSNIYFLEWYK--EN 575

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQI 407
              +++  +        L+ + LS+  +
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  135 bits (341), Expect = 9e-36
 Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 15/233 (6%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLE 267
            L  V  S  GL+ +P+         L+ L NN +  +  D   GL +L  L L +N + 
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 268 TLPD-SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
            + + +   L  L+ L +S N L  +P ++    SLVEL    NR+  +P  +   L N+
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 327 QKLLVPLNKIRFLPTSIG--EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
             + +  N +       G  +   L +L     +L G+P        L  L++  N   +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHN--KI 205

Query: 385 KELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
           + +        + L  L L +NQI  +   +   L  L +L+L+ N +  +P 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  128 bits (323), Expect = 3e-33
 Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 20/242 (8%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
           + L  + L +  +  + E AF  +  L+ + +S NHL  IP ++    +L EL +  N +
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRI 135

Query: 267 ETLPDSI-GLLDNLKILDVSGNKL--SALPDSISHCRSLVELDASFNRLAYLPTNIGHEL 323
             +P  +   L N+  +++ GN L  S           L  L  S  +L  +P ++    
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL---P 192

Query: 324 VNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNF 381
             L +L +  NKI+ +    +   + L  L    N++  +   ++  L  L  L++ +N 
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN- 251

Query: 382 TDMKELPETFGELTNLKELDLSNNQIHALPNT-------FGRLDKLIKLNLEENPMVIPP 434
             +  +P    +L  L+ + L  N I  +            +      ++L  NP+    
Sbjct: 252 -KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 435 VE 436
           V+
Sbjct: 311 VQ 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  124 bits (313), Expect = 6e-32
 Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 22/236 (9%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
           + L+++ +S   L  +P       + L  + + +N +  +P  + +GL N+  + +  N 
Sbjct: 102 RKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 266 LETLPDSIGLLDNLK--ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHEL 323
           LE      G  D LK   L +S  KL+ +P  +    +L EL    N++  +        
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRY 216

Query: 324 VNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT 382
             L +L +  N+IR +   S+  + +LR L    N+L  +PA +  L  L+++ + +N  
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN- 275

Query: 383 DMKELPET-------FGELTNLKELDLSNNQIHAL---PNTFGRLDKLIKLNLEEN 428
            + ++            +      + L NN +      P TF  +   + +     
Sbjct: 276 -ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (299), Expect = 6e-30
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 14/211 (6%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASN 264
            SL ++ +    +R +P+  F  +  +  + +  N LE           + L  L ++  
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHEL 323
            L  +P    L + L  L +  NK+ A+    +     L  L    N++  +       L
Sbjct: 183 KLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-------GKLTNLEILN 376
             L++L +  NK+  +P  + ++  L+ +  H N +  +            K      ++
Sbjct: 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 377 VSSNFTDMKEL-PETFGELTNLKELDLSNNQ 406
           + +N     E+ P TF  +T+   +   N +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  136 bits (344), Expect = 1e-34
 Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 35/231 (15%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI---PDSIAGLVNLEELNLASN 264
           KSL+++  +S        +   +  L  + LS N L        S  G  +L+ L+L+ N
Sbjct: 325 KSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPDSI--SHCRSLVELDASFNRLAYLPTNIGHE 322
            + T+  +   L+ L+ LD   + L  + +       R+L+ LD S          I + 
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN 380
           L +L+                        L    N      LP    +L NL  L++S  
Sbjct: 444 LSSLE-----------------------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
              +++L    F  L++L+ L++++NQ+ ++P   F RL  L K+ L  NP
Sbjct: 481 Q--LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 1e-33
 Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 15/236 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            ++    L S  +  + +      G + + L N      P     L +L+ L   SN   
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGG 338

Query: 268 TLPDSIGLLDNLKILDVSGNKLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
                + L  +L+ LD+S N LS       S     SL  LD SFN +  + +N    L 
Sbjct: 339 NAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLE 396

Query: 325 NLQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN- 380
            L+ L    + ++ +   +    + +L +LD                L++LE+L ++ N 
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
           F +   LP+ F EL NL  LDLS  Q+  L    F  L  L  LN+  N +  +P 
Sbjct: 457 FQEN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  129 bits (325), Expect = 4e-32
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 14/234 (5%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLL 266
           S + +DLS   LR L   +F     L+++ LS   ++ I   +   L +L  L L  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIG-HEL 323
           ++L       L +L+ L      L++L +  I H ++L EL+ + N +           L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 324 VNLQKLLVPLNKIRFLP-TSIGEMASLR----HLDAHFNELHGLPATIGKLTNLEILNVS 378
            NL+ L +  NKI+ +  T +  +  +      LD   N ++ +     K   L  L + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 379 SNFTDMKELPETFGELTNLKELDLSNNQIHALPN----TFGRLDKLIKLNLEEN 428
           +NF  +  +      L  L+   L   +     N        L+ L  L +EE 
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  124 bits (312), Expect = 2e-30
 Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 33/225 (14%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLP- 270
                     +P+        + + LS N L  +   S      L+ L+L+   ++T+  
Sbjct: 12  YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 271 DSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
            +   L +L  L ++GN + +L     S   SL +L A    LA L       L  L++L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 330 LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP- 388
            V  N I+                        LP     LTNLE L++SSN   ++ +  
Sbjct: 130 NVAHNLIQSFK---------------------LPEYFSNLTNLEHLDLSSNK--IQSIYC 166

Query: 389 ETFGELTNLK----ELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
                L  +      LDLS N ++ +     +  +L KL L  N 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (295), Expect = 3e-28
 Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 254 VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRL 312
               ELN        +PD   L  + K LD+S N L  L   S      L  LD S   +
Sbjct: 12  YQCMELNFYK-----IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLT 370
             +       L +L  L++  N I+ L       ++SL+ L A    L  L    IG L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKL----IKLNL 425
            L+ LNV+ N     +LPE F  LTNL+ LDLS+N+I ++       L ++    + L+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 426 EENPM-VIPP 434
             NPM  I P
Sbjct: 185 SLNPMNFIQP 194

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (289), Expect = 2e-27
 Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 45/266 (16%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
             L+ +DLS   ++ +   A+  ++ L  + L+ N ++ +     +GL +L++L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 266 LETLPD-SIGLLDNLKILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIGHE 322
           L +L +  IG L  LK L+V+ N + +   P+  S+  +L  LD S N++  +       
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 323 LVNLQKLLVPL----NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEI-- 374
           L  +  L + L    N + F+     +   L  L    N      +   I  L  LE+  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 375 ------------------------------LNVSSNFTDMKELPETFGELTNLKELDLSN 404
                                           ++     + ++ + F  LTN+    L +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 405 NQIHALPNT--FGRLDKLIKLNLEEN 428
             I  + +         L  +N +  
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFG 317

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 7e-25
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA--GLVNLEELNLASNLL 266
           SL+ +DLS  G+  +   F  +  L  +   +++L+ + +      L NL  L+++    
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSA--LPDSISHCRSLVELDASFNRLAYLPTNIGHEL 323
               + I   L +L++L ++GN      LPD  +  R+L  LD S  +L  L     + L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 324 VNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTN 371
            +LQ L +  N+++ +P  I   + SL+ +  H N        I  L+ 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (256), Expect = 2e-23
 Identities = 40/244 (16%), Positives = 84/244 (34%), Gaps = 29/244 (11%)

Query: 208 KSLEQVDLSSRGLRFL--PEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLE----ELN 260
           K+L++++++   ++    PE F  +  L  + LS+N ++ I    +  L  +      L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 261 LASNLLETLPDSIGLLDNLKILDVSGNKLSA--LPDSISHCRSLVELD------ASFNRL 312
           L+ N +  +         L  L +  N  S   +   I     L           +   L
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE----MASLRHLDAHFNELHGLPATIG- 367
                +    L NL      L  + +    I +    + ++         +  +      
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 368 -KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426
               +LE++N         + P    +L +LK L  ++N+      +   L  L  L+L 
Sbjct: 304 FGWQHLELVNCKFG-----QFP--TLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLS 355

Query: 427 ENPM 430
            N +
Sbjct: 356 RNGL 359

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  102 bits (256), Expect = 3e-23
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 9/155 (5%)

Query: 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL 339
                       +PD++    S   LD SFN L +L +        LQ L +   +I+ +
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 340 P-TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
              +   ++ L  L    N +  L       L++L+ L        +  L     G L  
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKT 125

Query: 397 LKELDLSNNQIHAL--PNTFGRLDKLIKLNLEENP 429
           LKEL++++N I +   P  F  L  L  L+L  N 
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)

Query: 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASN 264
           ++L  +D+S    R      F  ++ L ++ ++ N  +   +PD    L NL  L+L+  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 265 LLETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRL 312
            LE L  +    L +L++L+++ N+L ++PD I     SL ++    N  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 208 KSLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASN 264
            SLE + ++    +  FLP+ F  +  L  + LS   LE +  +    L +L+ LN+ASN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 265 LLETLPDSI-GLLDNLKILDVSGNKLS 290
            L+++PD I   L +L+ + +  N   
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
           ++L  +DLS   L  L   AF  ++ L+++++++N L+ +PD I   L +L+++ L +N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 266 LETLPDSIGLL 276
            +     I  L
Sbjct: 530 WDCSCPRIDYL 540

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 5e-34
 Identities = 50/230 (21%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +LE +  ++  +  +    G +  L  +SL+ N L+ I  ++A L NL +L+LA+N + 
Sbjct: 199 TNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS 256

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            L   +  L  L  L +  N++S +   ++   +L  L+ + N+L  +   I + L NL 
Sbjct: 257 NLAP-LSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDIS-PISN-LKNLT 312

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L +  N I  +   +  +  L+ L  + N++  + + +  LTN+  L+   N   + +L
Sbjct: 313 YLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHN--QISDL 368

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEV 437
                 LT + +L L++      P  +     +          +I P  +
Sbjct: 369 TP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (323), Expect = 3e-32
 Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 15/222 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
               +  L    +     +   +  +  +      ++ I   +  L NL ++N ++N L 
Sbjct: 24  AEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT 81

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L  L  + ++ N+++ +   +++  +L  L    N++  +   + + L NL 
Sbjct: 82  DIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKN-LTNLN 137

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKE 386
           +L +  N I  +  ++  + SL+ L          P  +  LT LE L++SSN  +D   
Sbjct: 138 RLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSD--- 191

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
                 +LTNL+ L  +NNQI  +    G L  L +L+L  N
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  121 bits (306), Expect = 5e-30
 Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 9/221 (4%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +L  +DL++  +  L      +  L  + L  N +  I   +AGL  L  L L  N LE
Sbjct: 243 TNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLE 300

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   I  L NL  L +  N +S +   +S    L  L    N+++ +  ++ + L N+ 
Sbjct: 301 DIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS-SLAN-LTNIN 356

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L    N+I  L   +  +  +  L  +       P       N+ I N   N T     
Sbjct: 357 WLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNY--KANVSIPNTVKNVTGALIA 413

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           P T  +  +  E D++ N             + + +     
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (291), Expect = 4e-28
 Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 14/192 (7%)

Query: 238 LSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSIS 297
             +  +  I  +   L    +  L    +     S   LD +  L      + ++   + 
Sbjct: 9   TQDTPINQIF-TDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVE 65

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
           +  +L +++ S N+L  +   + + L  L  +L+  N+I  +   +  + +L  L    N
Sbjct: 66  YLNNLTQINFSNNQLTDIT-PLKN-LTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN 122

Query: 358 ELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
           ++  +   +  LTNL  L +SSN  +D          LT+L++L   N      P     
Sbjct: 123 QITDIDP-LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQVTDLKP--LAN 175

Query: 417 LDKLIKLNLEEN 428
           L  L +L++  N
Sbjct: 176 LTTLERLDISSN 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  129 bits (326), Expect = 1e-33
 Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 19/238 (7%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +L+ + L+S G+  + E +F  +  L  + LS N+L  +  S    L +L  LNL  N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 267 ETLPDSI--GLLDNLKILDVSGN-KLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHE 322
           +TL ++     L  L+IL V      + +     +    L EL+   + L          
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 323 LVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPAT---------IGKLTNL 372
           + N+  L++ + +   L        +S+  L+    +L     +         + K    
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 373 EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
             + ++     + ++ +   +++ L EL+ S NQ+ ++P   F RL  L K+ L  NP
Sbjct: 257 RNVKITDE--SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  120 bits (302), Expect = 3e-30
 Identities = 42/237 (17%), Positives = 95/237 (40%), Gaps = 15/237 (6%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +++ +DLS+  + ++      R   L+ + L++N +  I +   + L +LE L+L+ N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSI--SHCRSLVELDASFN-RLAYLPTNIGHE 322
             L  S    L +L  L++ GN    L ++   SH   L  L          +       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 323 LVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
           L  L++L +  + ++     S+  + ++ HL  H  +   L        +++E L +   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 381 FTDMKELPE-------TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
             D     E       +  +    + + +++  +  +     ++  L++L    N +
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  113 bits (284), Expect = 7e-28
 Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 33/237 (13%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLETLPD 271
              SS  L  +P        ++ + LSNN +  I +S     VNL+ L L SN + T+ +
Sbjct: 36  CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 272 SI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYL-PTNIGHELVNLQK 328
                L +L+ LD+S N LS L  S      SL  L+   N    L  T++   L  LQ 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 329 LLVPLN-KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           L V        +                             LT LE L + ++  D++  
Sbjct: 154 LRVGNMDTFTKIQ----------------------RKDFAGLTFLEELEIDAS--DLQSY 189

Query: 388 P-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV 442
             ++   + N+  L L   Q   L          +  L L +  +       +  G 
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 209 SLEQVDLSSRGLRFLPE----AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN 264
            L   DL +     L      +  +    R + +++  L  +   +  +  L EL  + N
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287

Query: 265 LLETLPDSI-GLLDNLKILDVSGNKL 289
            L+++PD I   L +L+ + +  N  
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  127 bits (320), Expect = 2e-33
 Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 21/231 (9%)

Query: 213 VDLSSRGLRFLPEAFGRI-AGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP 270
                     +P+    +    + + LS N L  +   S      L+ L+L+   ++T+ 
Sbjct: 12  YQCMELNFYKIPDN---LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 271 DSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
           D     L +L  L ++GN + +L     S   SL +L A    LA L       L  L++
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 329 LLVPLNKIRFLPTSIG---EMASLRHLDAHFNELHGLPA-TIGKLTNLEI----LNVSSN 380
           L V  N I+           + +L HLD   N++  +    +  L  + +    L++S N
Sbjct: 129 LNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
              M  +    F E+  LKEL L  NQ+ ++P   F RL  L K+ L  NP
Sbjct: 188 --PMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  113 bits (284), Expect = 2e-28
 Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 16/190 (8%)

Query: 254 VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRL 312
               ELN        +PD   L  + K LD+S N L  L   S      L  LD S   +
Sbjct: 12  YQCMELNFYK-----IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLT 370
             +       L +L  L++  N I+ L       ++SL+ L A    L  L    IG L 
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKL----IKLNL 425
            L+ LNV+ N     +LPE F  LTNL+ LDLS+N+I ++       L ++    + L+L
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 426 EENPM-VIPP 434
             NPM  I P
Sbjct: 185 SLNPMNFIQP 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 9/158 (5%)

Query: 285 SGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI- 343
                  +PD++    S   LD SFN L +L +        LQ L +   +I+ +     
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 344 GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELD 401
             ++ L  L    N +  L       L++L+ L       ++  L     G L  LKEL+
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET--NLASLENFPIGHLKTLKELN 130

Query: 402 LSNNQIHALP--NTFGRLDKLIKLNLEENPMVIPPVEV 437
           +++N I +      F  L  L  L+L  N +       
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 12/131 (9%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP--DSIAGLVNLEELNLASNL 265
           SL+++      L  L     G +  L+ +++++N ++     +  + L NLE L+L+SN 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 266 LETLPDSIGLLDNLK-------ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTN 318
           ++++      L  L         LD+S N ++ +         L EL    N+L  +P  
Sbjct: 161 IQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218

Query: 319 IGHELVNLQKL 329
           I   L +LQK+
Sbjct: 219 IFDRLTSLQKI 229

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  133 bits (337), Expect = 2e-33
 Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 38/253 (15%)

Query: 209 SLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           S+  +DLS   +  L    F  +  L++++L+ N +  I D    GL NL+ LNL+ NLL
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELV 324
             L  S    L  +  +D+  N ++ + D        L  LD   N L  +     H + 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIP 381

Query: 325 NLQKLLVPLNKIRFLPT----------------------SIGEMASLRHLDAHFNELHGL 362
           ++  + +  NK+  LP                        +  +  L+ L  + N     
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 363 P--ATIGKLTNLEILNVSSNFTDMKEL----PETFGELTNLKELDLSNNQIHALPN-TFG 415
               T  +  +LE L +  N   +        + F  L++L+ L L++N +++LP   F 
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 416 RLDKLIKLNLEEN 428
            L  L  L+L  N
Sbjct: 502 HLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  118 bits (298), Expect = 2e-28
 Identities = 59/254 (23%), Positives = 110/254 (43%), Gaps = 33/254 (12%)

Query: 208 KSLEQVDLSSRGLRFLPE--AFGRIAGLRLMSLSNNHLEVIP-DSIAGL--VNLEELNLA 262
           K+L ++DLS   +R L    +FG++  L+ +  S+N + ++    +  L    L   +LA
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 263 SNLLETLPD-----SIGLLDN--LKILDVSGNKLSALPD-------------SISHCRSL 302
           +N L +         +    N  L+ILDVSGN  +                 S+     +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 303 VELDASFNRLAYLPTNI--GHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNEL 359
           +     F+ +     N   G    +++ L +    +  L + +   +  L+ L+  +N++
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 360 HGLPATI-GKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGR 416
           + +       L NL++LN+S N   + EL    F  L  +  +DL  N I  +   TF  
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNL--LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 417 LDKLIKLNLEENPM 430
           L+KL  L+L +N +
Sbjct: 361 LEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (287), Expect = 5e-27
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 35/254 (13%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLAS 263
            +L  +DL S  + FL   AF  +  L  + L    L    +       L  L  L+L+ 
Sbjct: 73  PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 264 NLLETLP--DSIGLLDNLKILDVSGNKLSALPDSI---SHCRSLVELDASFNRLAYLPTN 318
           N + +L    S G L++LK +D S N++  + +        ++L     + N L    + 
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 319 IGHELVN------LQKLLVPLNKIRFLPT-------------SIGEMASLRHLDAHFNEL 359
              + +N      L+ L V  N      T             S+     +      F+ +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 360 HGLPATI---GKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALPN-TF 414
                        +++  L++S  F  +  L    F  L +LK L+L+ N+I+ + +  F
Sbjct: 253 KDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 415 GRLDKLIKLNLEEN 428
             LD L  LNL  N
Sbjct: 311 YGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (284), Expect = 1e-26
 Identities = 51/255 (20%), Positives = 93/255 (36%), Gaps = 36/255 (14%)

Query: 208 KSLEQVDLSSRGLRFL--PEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASN 264
           + L+ ++L S+        EAF  +  LR++ L ++ +  +      GL +L EL L   
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 265 LLETL---PDSIGLLDNLKILDVSGNKLSALP--DSISHCRSLVELDASFNRLAYLPTNI 319
            L            L  L  LD+S N++ +L    S     SL  +D S N++  +  + 
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 320 --GHELVNLQKLLVPLNKIRFLP-------TSIGEMASLRHLDAHFNELHGLPA------ 364
               +   L    +  N +            +      L  LD   N             
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227

Query: 365 -------TIGKLTNLEILNVSSNFTDMKELPE-TFGEL--TNLKELDLSNNQIHAL-PNT 413
                  ++    ++       +  ++K+  + TF  L  ++++ LDLS+  + +L    
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFH--NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 414 FGRLDKLIKLNLEEN 428
           F  L  L  LNL  N
Sbjct: 286 FETLKDLKVLNLAYN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  110 bits (276), Expect = 1e-25
 Identities = 50/255 (19%), Positives = 86/255 (33%), Gaps = 34/255 (13%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-- 269
                  L  +P+       L    LS N++  +   S   L  L+ L L S        
Sbjct: 9   AFYRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRL--AYLPTNIGHELVNL 326
            ++   L NL+ILD+  +K+  L          L EL   F  L  A L       L  L
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 327 QKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIGK---LTNLEILNVSSN- 380
            +L +  N+IR L    S G++ SL+ +D   N++  +     +      L   ++++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 381 -----FTDMKELPETFGELTNLKELDLSNNQIHALPN-------------TFGRLDKLIK 422
                  D  +    F  +  L+ LD+S N                    +      ++ 
Sbjct: 186 LYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 423 LNLEENPMVIPPVEV 437
                + +  P    
Sbjct: 245 AGFGFHNIKDPDQNT 259

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 2e-23
 Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 35/205 (17%)

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSGNKLSAL 292
           R+      +L  +P     L   E L L+ N + T+   S   L+ L++L++        
Sbjct: 7   RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 293 --PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLR 350
              ++  +  +L  LD   +++ +L                        P +   +  L 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLH-----------------------PDAFQGLFHLF 100

Query: 351 HLDAHFNELHGL---PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI 407
            L  +F  L            L  L  L++S N      L  +FG+L +LK +D S+NQI
Sbjct: 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160

Query: 408 HALP-NTFGRLD--KLIKLNLEENP 429
             +  +    L    L   +L  N 
Sbjct: 161 FLVCEHELEPLQGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 2e-20
 Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 18/220 (8%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS--IAGLVNLEELNLASNLL 266
           S+  + LS   L  LP+         L+ LS N LE +     +  + +L+ L L  N  
Sbjct: 382 SIPDIFLSGNKLVTLPKINLT---ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438

Query: 267 ETLPDS--IGLLDNLKILDVSGNKLSAL------PDSISHCRSLVELDASFNRLAYLPTN 318
            +           +L+ L +  N L          D       L  L  + N L  LP  
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498

Query: 319 IGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVS 378
           +   L  L+ L +  N++  L  +    A+L  LD   N+L      +    +L +L+++
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPDV--FVSLSVLDIT 555

Query: 379 SN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRL 417
            N F    EL  TF    N   + ++              
Sbjct: 556 HNKFICECEL-STFINWLNHTNVTIAGPPADIYCVYPDSF 594

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  124 bits (312), Expect = 4e-32
 Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 33/225 (14%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRI-AGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           S  +V+   R L  LP     +     ++ LS N L     +       L +LNL    L
Sbjct: 11  SHLEVNCDKRNLTALPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
             L     L   L  LD+S N+L +LP       +L  LD SFNRL  LP      L  L
Sbjct: 68  TKLQVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 327 QKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
           Q+L +  N+++ LP  +                            LE L++++N  ++ E
Sbjct: 127 QELYLKGNELKTLPPGL------------LT----------PTPKLEKLSLANN--NLTE 162

Query: 387 LPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
           LP      L NL  L L  N ++ +P   FG    L    L  NP
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  114 bits (287), Expect = 9e-29
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 249 SIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDA 307
            ++ + +  E+N     L  LP    L  +  IL +S N L     +       L +L+ 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI- 366
               L  L       L  L  L +  N+++ LP     + +L  LD  FN L  LP    
Sbjct: 63  DRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 367 GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLN 424
             L  L+ L +  N  ++K LP         L++L L+NN +  LP      L+ L  L 
Sbjct: 121 RGLGELQELYLKGN--ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 425 LEENPM-VIPP 434
           L+EN +  IP 
Sbjct: 179 LQENSLYTIPK 189

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  125 bits (315), Expect = 6e-31
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 33/229 (14%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLE 267
           +    D  SR    +P      A ++ + LS N +  I    +    NL+ L L S+ + 
Sbjct: 6   ASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 268 TLPDSI-GLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVN 325
           T+       L +L+ LD+S N LS+L  S      SL  L+   N    L          
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG--------- 114

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPA-TIGKLTNLEILNVSSNFTD 383
                        + +    + +L+ L   +      +       LT+L  L + +    
Sbjct: 115 -------------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-- 159

Query: 384 MKEL-PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPM 430
           ++    ++   + ++  L L  ++   L       L  +  L L +  +
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (311), Expect = 2e-30
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 7/181 (3%)

Query: 259 LNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPT 317
            +  S    ++P   GL   +K LD+S NK++ +    +  C +L  L    +R+  +  
Sbjct: 10  CDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 318 NIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLP--ATIGKLTNLEI 374
           +  + L +L+ L +  N +  L +S  G ++SL++L+   N    L   +    LTNL+ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 375 LNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIP 433
           L + +  T  +     F  LT+L EL++    +      +   +  +  L L  +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 434 P 434
            
Sbjct: 188 L 188

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (292), Expect = 6e-28
 Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 12/234 (5%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +++ +DLS   + ++        A L+++ L ++ +  I       L +LE L+L+ N L
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 267 ETLPDS-IGLLDNLKILDVSGNKLSALPDS--ISHCRSLVELD-ASFNRLAYLPTNIGHE 322
            +L  S  G L +LK L++ GN    L  +    +  +L  L   +    + +       
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 323 LVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSN 380
           L +L +L +    +R     S+  +  + HL  H +E   L       L+++  L +   
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPMVI 432
             ++                +     +   L + +F  L KL++  LE + +  
Sbjct: 207 --NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 7e-27
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 34/252 (13%)

Query: 208 KSLEQVDLSSR-GLRFLPE-AFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASN 264
            +L+ + + +      +    F  +  L  + +    L      S+  + ++  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 265 LLETLPDSI-GLLDNLKILDVSGNKLSALPDSI------------SHCRSLVELDASFNR 311
               L +    +L +++ L++    L+    S                R  V  D SFN 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG---------EMASLRHLDAHFNELHGL 362
           L  L   I   L  ++     LN +     S           E  ++R L      L   
Sbjct: 243 LLKLLRYILE-LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301

Query: 363 PA-TIGKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHAL----PNTFGR 416
            +     L  ++ + V ++   +  +P      L +L+ LDLS N +           G 
Sbjct: 302 LSTVYSLLEKVKRITVENS--KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 417 LDKLIKLNLEEN 428
              L  L L +N
Sbjct: 360 WPSLQTLVLSQN 371

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (282), Expect = 1e-26
 Identities = 51/229 (22%), Positives = 85/229 (37%), Gaps = 38/229 (16%)

Query: 208 KSLEQVDLSSRGLRFL----PEAFGRIAGLRLMSLSNNHLEVIP---DSIAGLVNLEELN 260
           KSLE +DLS   +           G    L+ + LS NHL  +    + +  L NL  L+
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393

Query: 261 LASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG 320
           ++ N    +PDS    + ++ L++S   +  +   I    +L  LD S N L        
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ--TLEVLDVSNNNLDSFSLF-- 449

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
             L  LQ+L +  NK++ LP        L  +    N+L  +P                 
Sbjct: 450 --LPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSVP----------------- 489

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
                     F  LT+L+++ L  N           L + +  N ++  
Sbjct: 490 -------DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (255), Expect = 3e-23
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           D   + D      +++P  ++   ++  LD SFN++ Y+         NLQ L++  ++I
Sbjct: 5   DASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGEL 394
             +       + SL HLD   N L  L +   G L++L+ LN+  N      +   F  L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 395 TNLKELDLS-NNQIHALP-NTFGRLDKLIKLNLEEN 428
           TNL+ L +        +    F  L  L +L ++  
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFN 357
           C +    D        +P+ +      ++ L +  NKI ++    +   A+L+ L    +
Sbjct: 4   CDASGVCDGRSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 358 ELHGLPATI-GKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALPNT-- 413
            ++ +       L +LE L++S N   +  L    FG L++LK L+L  N    L  T  
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDN--HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 414 FGRLDKLIKLNLEEN 428
           F  L  L  L +   
Sbjct: 119 FPNLTNLQTLRIGNV 133

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  119 bits (301), Expect = 8e-31
 Identities = 71/197 (36%), Positives = 109/197 (55%), Gaps = 10/197 (5%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI-GLLDNLKILDVSGNKLSALPDSIS 297
           S+  L  IP +I    + ++L+L SN L +LP      L  L++L ++ NKL  LP  I 
Sbjct: 24  SSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 298 HC-RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAH 355
              ++L  L  + N+L  LP  +  +LVNL +L +  N+++ LP  +   +  L +L   
Sbjct: 82  KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 356 FNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALP-N 412
           +NEL  LP  +  KLT+L+ L + +N   +K +PE  F +LT LK L L NNQ+  +P  
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNN--QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 413 TFGRLDKLIKLNLEENP 429
            F  L+KL  L L+ENP
Sbjct: 200 AFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 98.5 bits (246), Expect = 3e-23
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +N   +D S  KL+A+P +I       +LD   N+L+ LP+   H L  L+ L +  NK+
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGE 393
           + LP  I  E+ +L  L    N+L  LP  +  +L NL  L +  N   +K LP   F  
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN--QLKSLPPRVFDS 131

Query: 394 LTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
           LT L  L L  N++ +LP   F +L  L +L L  N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           +LE + ++   L+ LP   F ++  L  + L  N L+ +P  +   L  L  L+L  N L
Sbjct: 86  NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 267 ETLPDSIGLLD---NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHE 322
           ++LP   G+ D   +LK L +  N+L  +P+        L  L    N+L  +P      
Sbjct: 146 QSLPK--GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 323 LVNLQKL 329
           L  L+ L
Sbjct: 204 LEKLKML 210

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  123 bits (310), Expect = 1e-30
 Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 17/202 (8%)

Query: 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286
             ++A L  +   N+ +  +   I  L  L +L   SN + TL   +    NL  L    
Sbjct: 38  EEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS 94

Query: 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEM 346
           NKL+ L   ++    L  L+   N+L  L  +   +   L  L    N +  +   +   
Sbjct: 95  NKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTEID--VSHN 147

Query: 347 ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQ 406
             L  LD H N+       +   T L  L+ S N   + EL     +   L  L+   N 
Sbjct: 148 TQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN--KITELD--VSQNKLLNRLNCDTNN 202

Query: 407 IHALPNTFGRLDKLIKLNLEEN 428
           I  L     +  +L  L+   N
Sbjct: 203 ITKLD--LNQNIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (302), Expect = 1e-29
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 21/223 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L ++D          +       L  +  S N +  +   ++    L  LN  +N + 
Sbjct: 148 TQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            L   +     L  LD S NKL+ +   ++    L   D S N L  L  +    L  L 
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVST---LSKLT 257

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDA-HFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
            L      +  +   +     L +  A    ++  L   +   T L +L+  +    + E
Sbjct: 258 TLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAA--GITE 311

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
           L     +   L  L L+N ++  L        KL  L+     
Sbjct: 312 LD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (299), Expect = 3e-29
 Identities = 50/222 (22%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            +L  +   S  L  L      +  L  ++   N L  +  S      L  LN A N L 
Sbjct: 85  TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS--QNPLLTYLNCARNTLT 140

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +     L  LD   NK     D ++    L  LD SFN++  L  +   +   L 
Sbjct: 141 EID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELDVS---QNKLLN 194

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           +L    N I  L   + +   L  LD   N+L  +   +  LT L   + S N   + EL
Sbjct: 195 RLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN--PLTEL 248

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
                 L+ L  L      +  +        +LI    E   
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  116 bits (292), Expect = 3e-28
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 15/194 (7%)

Query: 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294
            ++ +         S   L  L  L+  ++ +  +   I  L  L  L  + N ++ L  
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD- 80

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
            +S   +L  L    N+L  L       L  L  L    NK+  L   + +   L +L+ 
Sbjct: 81  -LSQNTNLTYLACDSNKLTNLDVT---PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNC 134

Query: 355 HFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTF 414
             N L  +   +   T L  L+   N    K         T L  LD S N+I  L    
Sbjct: 135 ARNTLTEID--VSHNTQLTELDCHLN---KKITKLDVTPQTQLTTLDCSFNKITELD--V 187

Query: 415 GRLDKLIKLNLEEN 428
            +   L +LN + N
Sbjct: 188 SQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  113 bits (285), Expect = 2e-27
 Identities = 45/233 (19%), Positives = 78/233 (33%), Gaps = 23/233 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
           K L +++  +  +  L     +   L  +  S+N L  I   +  L  L   + + N L 
Sbjct: 191 KLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            L  S   L  L  L      L  +   ++H   L+   A   R   +          L 
Sbjct: 247 ELDVST--LSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLY 300

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L      I  L   + +   L +L  +  EL  L   +   T L+ L+  +    +++ 
Sbjct: 301 LLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA--HIQDF 354

Query: 388 PETFGELTNLKELDLSNNQIHALPNTFGRLDKLI------KLNLEENPMVIPP 434
               G++  L     +  Q   +P      + L        L+   NPM I P
Sbjct: 355 SS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLAS-NLLETLPDSIGLLDNLKILDVSGNKLSALPDSIS 297
           + +  +  PD      N      A+  +  T   S   L  L  LD   + ++ +   I 
Sbjct: 8   TQSFNDWFPDD-----NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IE 61

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
               L +L  + N +  L  +   +  NL  L    NK+  L   +  +  L +L+   N
Sbjct: 62  KLTGLTKLICTSNNITTLDLS---QNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116

Query: 358 ELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRL 417
           +L  L   + +   L  LN + N   + E+       T L ELD   N+     +     
Sbjct: 117 KLTKLD--VSQNPLLTYLNCARN--TLTEID--VSHNTQLTELDCHLNKKITKLD-VTPQ 169

Query: 418 DKLIKLNLEEN 428
            +L  L+   N
Sbjct: 170 TQLTTLDCSFN 180

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 43/231 (18%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L  +D SS  L  +      +  L     S N L  +  S   L  L  L+     L 
Sbjct: 212 IQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLL 267

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +     L      G +     D ++H   L  LD     +  L  +   +   L 
Sbjct: 268 EID--LTHNTQLIYFQAEGCRKIKELD-VTHNTQLYLLDCQAAGITELDLS---QNPKLV 321

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKE 386
            L +   ++  L   +     L+ L      +    + +GK+  L     +      M +
Sbjct: 322 YLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPK 378

Query: 387 LPETFGELT---NLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPP 434
              T   LT   +   LD   N ++  P   G  D+       EN     P
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 10/118 (8%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L  + L++  L  L         L+ +S  N H++    S+  +  L     A     
Sbjct: 318 PKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTI 374

Query: 268 TLPDSIGLLDNL------KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNI 319
           T+P      ++L       +LD  GN ++  P              ++  L+     +
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVY-DQATNTITWENLSTDNPAV 431

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  116 bits (293), Expect = 5e-29
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 13/236 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASN-LL 266
           S          +  +P    R      +      L VI   + +G  +LE++ ++ N +L
Sbjct: 10  SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 267 ETLPDSI-GLLDNLKILDVS-GNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           E +   +   L  L  + +   N L  +      +  +L  L  S   + +LP       
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 324 VNLQKL-LVPLNKIRFLPTSI--GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
           +    L +     I  +  +   G       L  + N +  +  +    T L+ LN+S N
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187

Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434
             +++ELP   F   +    LD+S  +IH+LP      L KL   +      +   
Sbjct: 188 -NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 99.5 bits (248), Expect = 4e-23
 Identities = 55/229 (24%), Positives = 90/229 (39%), Gaps = 16/229 (6%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNH-LEVIPDSI-AGLVNLEELNLA-S 263
           ++  ++      LR + + AF     L  + +S N  LEVI   + + L  L E+ +  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 264 NLLETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFN-RLAYLPTNIG 320
           N L  +       L NL+ L +S   +  LPD    H    V LD   N  +  +  N  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 321 HEL-VNLQKLLVPLNKIRFLPTSIGEMASLRHLD-AHFNELHGLPATI-GKLTNLEILNV 377
             L      L +  N I+ +  S      L  L+ +  N L  LP  +    +   IL++
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 378 SSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
           S     +  LP      L  L+     N +   LP T  +L  L++ +L
Sbjct: 210 SRT--RIHSLPSYGLENLKKLRARSTYNLK--KLP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 99.5 bits (248), Expect = 4e-23
 Identities = 41/208 (19%), Positives = 79/208 (37%), Gaps = 15/208 (7%)

Query: 208 KSLEQVDLSS-RGLRFLP-EAFGRIAGLRLMSLSN-NHLEVIPDSI-AGLVNLEELNLAS 263
             LE++++S    L  +  + F  +  L  + +   N+L  I       L NL+ L +++
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 264 NLLETLPDSIGL-LDNLKILDVSGN-KLSALPDSI--SHCRSLVELDASFNRLAYLPTNI 319
             ++ LPD   +      +LD+  N  +  +  +         V L  + N +  +  + 
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 320 GHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNV 377
            +     +  L   N +  LP  +    +    LD     +H LP+     L  L   + 
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 378 SSNFTDMKELPETFGELTNLKELDLSNN 405
            +     K+LP T  +L  L E  L+  
Sbjct: 234 YNL----KKLP-TLEKLVALMEASLTYP 256

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  111 bits (280), Expect = 5e-28
 Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 34/226 (15%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
              + +L  + +         +  +  +  +N+ ++ +   I  L N+  L L  N L  
Sbjct: 20  ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD 77

Query: 269 LP--DSIGLLDNLKILDVSGNKLSALPDSISHC-RSLVELDASFNRLAYLPTNIGHELVN 325
           +        L NL  L ++GN+L +LP+ +     +L EL    N+L  LP  +  +L N
Sbjct: 78  ISALKE---LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMK 385
           L  L +  N+++ LP  +            F+          KLTNL  L++S N   ++
Sbjct: 135 LTYLNLAHNQLQSLPKGV------------FD----------KLTNLTELDLSYN--QLQ 170

Query: 386 ELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            LPE  F +LT LK+L L  NQ+ ++P+  F RL  L  + L +NP
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  100 bits (252), Expect = 4e-24
 Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 37/223 (16%)

Query: 211 EQVDLSSRGLRFLPEAFGRI-AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL 269
           E + +S+   +  P+      A     +L    +         L +++++   ++ ++++
Sbjct: 1   ETITVSTPIKQIFPD---DAFAETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSV 56

Query: 270 PDSIGLLDNLKILDVSGNKLSALP--DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
              I  L N++ L + GNKL  +     ++   +L  L  + N+L  LP  +  +L NL+
Sbjct: 57  Q-GIQYLPNVRYLALGGNKLHDISALKELT---NLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           +L++  N+++ LP  +            F+          KLTNL  LN++ N   ++ L
Sbjct: 113 ELVLVENQLQSLPDGV------------FD----------KLTNLTYLNLAHN--QLQSL 148

Query: 388 PE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
           P+  F +LTNL ELDLS NQ+ +LP   F +L +L  L L +N
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (289), Expect = 6e-28
 Identities = 54/280 (19%), Positives = 102/280 (36%), Gaps = 60/280 (21%)

Query: 208 KSLEQVDLSSRGLRFLP--EAFGRIAGLRLMSLSNNHLEVIPDSI---AGLVNLEELNLA 262
            SLE + L    ++ +     F  +    ++ L+ N ++ I +         +   L L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188

Query: 263 SNLLETLPDSIGL---------LDNLKILDVSGNKLSALPDSISHCR------------- 300
           S  L+ + +               ++  LD+SGN                          
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 301 ---------------------------SLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
                                       +   D S +++  L  ++     +L++L +  
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 334 NKIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-T 390
           N+I  +  +    +  L  L+   N L  + + +   L  LE+L++S N   ++ L + +
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN--HIRALGDQS 366

Query: 391 FGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           F  L NLKEL L  NQ+ ++P   F RL  L K+ L  NP
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 23/224 (10%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI--PDSIAGLVNLEELNLASNL 265
            +  VDLS   +  L E +F R+  L+ + +      ++   ++  GL +L  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 266 LETLPDSI-GLLDNLKILDVSGNKL--SALPDSI-SHCRSLVELDASFNRLAYL-PTNIG 320
              L       L NL++L ++   L  + L  +      SL  L    N +  + P +  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
             +     L +  NK++ +                     G   T+ +L+++ + +++  
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEED------------LLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN 424
           +    E      + T++  LDLS N          R    I   
Sbjct: 199 WLG-WEKCGNPFKNTSITTLDLSGNGFKESMA--KRFFDAIAGT 239

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.5 bits (217), Expect = 1e-18
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL 339
                    L  +P+ +     +  +D S N +A L       L +LQ L V       +
Sbjct: 13  YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV 69

Query: 340 --PTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
               +   ++SL  L   +N+   L       L NLE+L ++    D   L    F  LT
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 396 NLKELDLSNNQIHALPN--TFGRLDKLIKLNLEENP 429
           +L+ L L +N I  +     F  + +   L+L  N 
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.1 bits (203), Expect = 6e-17
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 38/229 (16%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDSIS 297
            N  L  +P+      ++  ++L+ N +  L + S   L +L+ L V             
Sbjct: 18  INRGLHQVPEL---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG------- 67

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHF 356
                            +  N    L +L  L +  N+   L T     +A+L  L    
Sbjct: 68  ---------------LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112

Query: 357 NELHG--LPATI-GKLTNLEILNVSSNFTDMKELP--ETFGELTNLKELDLSNNQIHALP 411
             L G  L       LT+LE+L +  N  ++K++     F  +     LDL+ N++ ++ 
Sbjct: 113 CNLDGAVLSGNFFKPLTSLEMLVLRDN--NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 412 N-TFGRLDK--LIKLNLEENPMV-IPPVEVVKEGVGAVKTFMAKRWLDI 456
                         L L    +  +    +  E  G      +   LD+
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  112 bits (282), Expect = 7e-28
 Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 15/223 (6%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             +  +     G+  + E    +  L  + L +N +  +   +  L  + EL L+ N L+
Sbjct: 41  DGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLK 98

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +  +I  L ++K LD++  +++ +   ++   +L  L    N++  +   +   L NLQ
Sbjct: 99  NV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAG-LTNLQ 154

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNF-TDMKE 386
            L +   ++  L   +  ++ L  L A  N++  +   +  L NL  +++ +N  +D+  
Sbjct: 155 YLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212

Query: 387 LPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
           L       +NL  + L+N  I   P  +   + L+  N+ + P
Sbjct: 213 L----ANTSNLFIVTLTNQTITNQPVFY--NNNLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  107 bits (270), Expect = 3e-26
 Identities = 39/194 (20%), Positives = 89/194 (45%), Gaps = 13/194 (6%)

Query: 237 SLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI 296
           +   +++     + A L  +  L+     + T+   +  L+NL  L++  N+++ L   +
Sbjct: 25  AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PL 81

Query: 297 SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHF 356
            +   + EL+ S N L  +   I   L +++ L +   +I  +   +  +++L+ L    
Sbjct: 82  KNLTKITELELSGNPLKNVS-AIAG-LQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDL 138

Query: 357 NELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFG 415
           N++  +   +  LTNL+ L++ +   +D+  L      L+ L  L   +N+I  +     
Sbjct: 139 NQITNISP-LAGLTNLQYLSIGNAQVSDLTPL----ANLSKLTTLKADDNKISDISP-LA 192

Query: 416 RLDKLIKLNLEENP 429
            L  LI+++L+ N 
Sbjct: 193 SLPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (263), Expect = 3e-25
 Identities = 39/186 (20%), Positives = 83/186 (44%), Gaps = 14/186 (7%)

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
            + PD    L N  ++    + +     +   LD +  L   G  ++ +   + +  +L+
Sbjct: 11  VIFPDP--ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLI 66

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP 363
            L+   N++  L   + + L  + +L +  N ++ +  +I  + S++ LD    ++  + 
Sbjct: 67  GLELKDNQITDLA-PLKN-LTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT 123

Query: 364 ATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK 422
             +  L+NL++L +  N  T++  L      LTNL+ L + N Q+  L      L KL  
Sbjct: 124 P-LAGLSNLQVLYLDLNQITNISPL----AGLTNLQYLSIGNAQVSDLTP-LANLSKLTT 177

Query: 423 LNLEEN 428
           L  ++N
Sbjct: 178 LKADDN 183

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 12/231 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             + +++LS   L+ +  A   +  ++ + L++  +  +   +AGL NL+ L L  N + 
Sbjct: 85  TKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT 142

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L NL+ L +   ++S L   +++   L  L A  N+++ +   +   L NL 
Sbjct: 143 NIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS-PLAS-LPNLI 198

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
           ++ +  N+I  +   +   ++L  +      +   P  +    NL + NV    +     
Sbjct: 199 EVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQP--VFYNNNLVVPNVVKGPSGAPIA 255

Query: 388 PETFGELTNLKELDLSNNQIHALPN---TFGRLDKLIKLNLEENPMVIPPV 435
           P T  +       +L+ N    + N   TF +        +  +  V  P+
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQPL 306

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  115 bits (289), Expect = 1e-27
 Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 19/249 (7%)

Query: 196 EEVMGLLQEAAGKSLEQVDLSS------RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS 249
              + +LQ     ++    +S+         R    +   +  L +  + ++        
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 250 I-AGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDSISH-CRSLVELD 306
           I     N+   N   +    +       +     LD S N L+            L  L 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 307 ASFNRLAYLPTNIG--HELVNLQKLLVPLNKIRFLPTSIG--EMASLRHLDAHFNELHGL 362
              N+L  L        ++ +LQ+L +  N + +           SL  L+   N L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 363 PATIGKLT-NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKL 420
                 L   +++L++ SN   +K +P+   +L  L+EL++++NQ+ ++P+  F RL  L
Sbjct: 415 IF--RCLPPRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470

Query: 421 IKLNLEENP 429
            K+ L  NP
Sbjct: 471 QKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)

Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
           ++D S N L  +P  +S  +    L+ S N ++ L T+    L  L+ L++  N+I++L 
Sbjct: 4   LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 341 TSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399
            S+      L +LD   N+L  +        NL+ L++S N  D   + + FG ++ LK 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 400 LDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           L LS   +         +  L    +   
Sbjct: 120 LGLSTTHLEKSS--VLPIAHLNISKVLLV 146

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 20/236 (8%)

Query: 222 FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLV------NLEELNLASNLLETLPDSIGL 275
           FL          +L +L+ N++E   +S   ++       +   ++++  L+   D    
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 276 ------LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
                 L  L I  V  +        I     ++   + + +    +      ++     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 329 LLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIG---KLTNLEILNVSSNFTDM 384
           L    N +        G +  L  L    N+L  L        ++ +L+ L++S N    
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK-LNLEENPMVIPPVEVVK 439
            E         +L  L++S+N +      F  L   IK L+L  N +   P +VVK
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNKIKSIPKQVVK 442

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 36/225 (16%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS-IAGLVNLEELNLASNLLETLPD 271
           VD S  GL  +P+         ++++S N++  +  S I  L  L  L ++ N ++ L  
Sbjct: 5   VDRSKNGLIHVPK--DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 272 SI-GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL 330
           S+      L+ LD+S NKL  +        +L  LD SFN    LP              
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP-------------- 106

Query: 331 VPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET 390
                   +    G M+ L+ L      L      +  + +L I  V     +     E 
Sbjct: 107 --------ICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKED 156

Query: 391 FGELTNLKELDL-----SNNQIHALPN-TFGRLDKLIKLNLEENP 429
              L +     L     +N + H + + +   +  L   N++   
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 25/245 (10%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             L+ + LS+  L            +  + L         +   GL +    +L      
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 268 TLPDSIGL-----------LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP 316
                  L           L N+K +         L        +    + + N +    
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 317 TNIGHELVNLQKL-----------LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
            +    L  +              L      R    S   + +L       +      + 
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 366 I-GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKL 423
           I    +N+ I N + + T M  +     +++    LD SNN +        G L +L  L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353

Query: 424 NLEEN 428
            L+ N
Sbjct: 354 ILQMN 358

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  108 bits (271), Expect = 6e-27
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 16/229 (6%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNL-L 266
             E   ++ + ++ +P         + + L   HL  IP  + + L N+  + ++ ++ L
Sbjct: 12  QEEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 267 ETLPDSI-GLLDNLKILDVSGNK-LSALPDSI-SHCRSLVELDASFNRLAYLPTNIG-HE 322
           + L       L  +  +++   + L+ +          L  L      L   P     + 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 323 LVNLQKLLVPLN-KIRFLPTSI--GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSS 379
                 L +  N  +  +P +   G       L  + N    +       T L+ + ++ 
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188

Query: 380 NFTDMKELPE-TFGEL-TNLKELDLSNNQIHALP-NTFGRLDKLIKLNL 425
           N   +  + +  FG + +    LD+S   + ALP      L +LI  N 
Sbjct: 189 N-KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 16/191 (8%)

Query: 255 NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFN-RL 312
             E+  +    ++ +P    L  + + L +    L  +P  + S+  ++  +  S +  L
Sbjct: 12  QEEDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 313 AYLPTNIGHELVNLQKLLVPLNK-IRFLPTSI-GEMASLRHLDAHFNELHGLPAT--IGK 368
             L ++  + L  +  + +   + + ++      E+  L+ L      L   P    +  
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 369 LTNLEILNVSSNFTDMKELPE-TFGELTN-LKELDLSNNQIHALP-NTFGRLDKLIKLNL 425
                IL ++ N   M  +P   F  L N    L L NN   ++    F    KL  + L
Sbjct: 129 TDIFFILEITDN-PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYL 186

Query: 426 EENPM--VIPP 434
            +N    VI  
Sbjct: 187 NKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHF 356
            C    +   +   +  +P+       + Q L +    +R +P+ +   + ++  +    
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI 64

Query: 357 N-ELHGLPATI-GKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALPNT 413
           +  L  L +     L+ +  + + +   ++  +  +   EL  LK L + N  +   P+ 
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNT-RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 414 --FGRLDKLIKLNLEENP 429
                 D    L + +NP
Sbjct: 124 TKVYSTDIFFILEITDNP 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  112 bits (280), Expect = 2e-26
 Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 238 LSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSIS 297
             +  ++ I           + NL    +     +   L+++  +  + + + ++   I 
Sbjct: 6   TVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQ 62

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
           +  ++ +L  + N+L  +   + + L NL  L +  NKI+ L +S+ ++  L+ L    N
Sbjct: 63  YLPNVTKLFLNGNKLTDI-KPLTN-LKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHN 119

Query: 358 ELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
            +  +   +  L  LE L + +N  TD+         LT L  L L +NQI  +      
Sbjct: 120 GISDING-LVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-LAG 173

Query: 417 LDKLIKLNLEEN 428
           L KL  L L +N
Sbjct: 174 LTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  110 bits (276), Expect = 6e-26
 Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292
               +L    +     +   L +++++   ++ ++++   I  L N+  L ++GNKL+ +
Sbjct: 23  TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 80

Query: 293 PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHL 352
              +++ ++L  L    N++  L +++   L  L+ L +  N I  +   +  +  L  L
Sbjct: 81  KP-LTNLKNLGWLFLDENKIKDL-SSLKD-LKKLKSLSLEHNGISDI-NGLVHLPQLESL 136

Query: 353 DAHFNELHGLPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIHALP 411
               N++  +   + +LT L+ L++  N  +D+  L      LT L+ L LS N I  L 
Sbjct: 137 YLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKNHISDLR 191

Query: 412 NTFGRLDKLIKLNLEENPMVIPPVEVVK 439
                L  L  L L     +  P+    
Sbjct: 192 A-LAGLKNLDVLELFSQECLNKPINHQS 218

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 6e-12
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 4/134 (2%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
           K L+ + L   G+  +      +  L  + L NN +  I   ++ L  L+ L+L  N + 
Sbjct: 109 KKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 166

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            +   +  L  L+ L +S N +S L  +++  ++L  L+         P N    LV   
Sbjct: 167 DIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 328 KLLVPLNKIRFLPT 341
            +      +     
Sbjct: 225 TVKNTDGSLVTPEI 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  107 bits (269), Expect = 3e-26
 Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 13/208 (6%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292
               +L    +     +   L +++++   ++ ++++   I  L N+  L ++GNKL+ +
Sbjct: 26  TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI 83

Query: 293 PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHL 352
              +++ ++L  L    N++  L +++   L  L+ L +  N I  +   +  +  L  L
Sbjct: 84  KP-LANLKNLGWLFLDENKVKDL-SSLKD-LKKLKSLSLEHNGISDI-NGLVHLPQLESL 139

Query: 353 DAHFNELHGLPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIHALP 411
               N++  +   + +LT L+ L++  N  +D+  L      LT L+ L LS N I  L 
Sbjct: 140 YLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNLYLSKNHISDLR 194

Query: 412 NTFGRLDKLIKLNLEENPMVIPPVEVVK 439
                L  L  L L     +  P+    
Sbjct: 195 A-LAGLKNLDVLELFSQECLNKPINHQS 221

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (254), Expect = 3e-24
 Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 238 LSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSIS 297
                ++ I  S        + NL    +     +   L+++  +  + + + ++   I 
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQ 65

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
           +  ++ +L  + N+L  +   + + L NL  L +  NK++ L +S+ ++  L+ L    N
Sbjct: 66  YLPNVTKLFLNGNKLTDI-KPLAN-LKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHN 122

Query: 358 ELHGLPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
            +  +   +  L  LE L + +N  TD+         LT L  L L +NQI  +      
Sbjct: 123 GISDING-LVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-LAG 176

Query: 417 LDKLIKLNLEEN 428
           L KL  L L +N
Sbjct: 177 LTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 38/205 (18%), Positives = 83/205 (40%), Gaps = 9/205 (4%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            ++ ++ L+   L  + +    +  L  + L  N ++ +  S+  L  L+ L+L  N + 
Sbjct: 68  PNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGIS 125

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            + + +  L  L+ L +  NK++ +   +S    L  L    N+++ +   +   L  LQ
Sbjct: 126 DI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAG-LTKLQ 181

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L +  N I  L  ++  + +L  L+    E    P  I   +NL + N   N       
Sbjct: 182 NLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP--INHQSNLVVPNTVKNTDGSLVT 238

Query: 388 PETFGELTNLKELDLSNNQIHALPN 412
           PE   +  + ++ ++  +       
Sbjct: 239 PEIISDDGDYEKPNVKWHLPEFTNE 263

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  109 bits (275), Expect = 8e-26
 Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 16/232 (6%)

Query: 209 SLEQVDLSSRG-LRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           ++  + ++ R        +   +  L +  + N       +++ +    +    L+ +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSISHC-RSLVELDASFNRLAYLPTNIGHELV 324
             +         +   L+ + N  +          + L  L    N L      +     
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTK 400

Query: 325 NLQKLLVPLNKIRFLPTSI-----GEMASLRHLDAHFNELHGLPATIGKLT-NLEILNVS 378
           N+  L      +  L +           S+  L+   N L G       L   +++L++ 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLH 458

Query: 379 SNFTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
           +N   +  +P+    L  L+EL++++NQ+ ++P+  F RL  L  + L +NP
Sbjct: 459 NN--RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  101 bits (253), Expect = 6e-23
 Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 21/235 (8%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAG------LVNLEELNLA 262
           +L+ ++ + +    L + F     +  +++ N  +    D          L +L   ++ 
Sbjct: 255 TLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK 313

Query: 263 SNLLETLPDSIG-LLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIG 320
           + +     +++  +   + I  +S +    +         S   L+ + N          
Sbjct: 314 NQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC 373

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-----TIGKLTNLEIL 375
             L  LQ L++  N ++          ++  L+     L+ L +     T     ++ +L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 376 NVSSNFTDMKELPET-FGELT-NLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           N+SSN      L  + F  L   +K LDL NN+I ++P     L  L +LN+  N
Sbjct: 434 NLSSN-----MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 2e-18
 Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 15/159 (9%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +   ++D S   L+ +P  +        L  S N ++ L       L  L+ L +  N+I
Sbjct: 31  ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET--FGE 393
           R L   +      L +LD   N L  +      + +L  L++S N  D   LP    FG 
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFN--DFDVLPVCKEFGN 144

Query: 394 LTNLKELDLSNNQIHALPNTFGRLDKL----IKLNLEEN 428
           LT L  L LS  +   L      +  L    I L+L   
Sbjct: 145 LTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSY 181

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.3 bits (211), Expect = 8e-18
 Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 10/209 (4%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS-IAGLVNLEELNLASNLLE 267
               VD S+R L  +P+        + +SLS N +  +    I+ L  L  L L+ N + 
Sbjct: 32  LESMVDYSNRNLTHVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89

Query: 268 TLPDSI-GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG-HELVN 325
           +L   +     +L+ LDVS N+L  +        SL  LD SFN    LP       L  
Sbjct: 90  SLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147

Query: 326 LQKLLVPLNKIRFLPTSIGEMASLR--HLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
           L  L +   K R L         L    LD     + G      ++ N  +L++  +   
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

Query: 384 MKELPETFGELTNLKELDLSNNQIHALPN 412
           +  +      +  L  L LSN +++    
Sbjct: 208 LFSVQV-NMSVNALGHLQLSNIKLNDENC 235

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.1 bits (200), Expect = 2e-16
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 11/134 (8%)

Query: 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFN 357
                 +D S   L ++P ++       + L +  N I  L    I  ++ LR L    N
Sbjct: 30  NELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86

Query: 358 ELHGLPATI-GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT--F 414
            +  L   +     +LE L+VS N   ++ +      + +L+ LDLS N    LP    F
Sbjct: 87  RIRSLDFHVFLFNQDLEYLDVSHN--RLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEF 142

Query: 415 GRLDKLIKLNLEEN 428
           G L KL  L L   
Sbjct: 143 GNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 29/246 (11%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLM----SLSNNHLEVIPDSIAGLVNLEELNLAS 263
             L  + LS+   R L      +A L L      L + H++        + N   L+L  
Sbjct: 146 TKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 264 NLLETLPDSIGL-LDNLKILDVSGNKLSALPDSISHCR-------------SLVELDASF 309
           +        + + ++ L  L +S  KL+                       +L  ++ ++
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 310 NRLAYLPTNIGHELV---NLQKL-LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365
                L        V   N+  L +           S   + SL                
Sbjct: 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 366 IG-KLTNLEILNVSSNFTDMKELPET-FGELTNLKELDLSNNQIHALP-NTFGRLDKLIK 422
           +      + I  +S +  D   +        ++   L+ + N            L +L  
Sbjct: 324 LYSVFAEMNIKMLSIS--DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 423 LNLEEN 428
           L L+ N
Sbjct: 382 LILQRN 387

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  104 bits (261), Expect = 2e-25
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 14/204 (6%)

Query: 238 LSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSIS 297
                +  +     GL N  + NL    +  L  S   L  ++  +   + + +L   + 
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQ 60

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
              +L EL  S N+++ L + +   L  L++L V  N+++ L  +    A L  L    N
Sbjct: 61  FFTNLKELHLSHNQISDL-SPLKD-LTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNN 116

Query: 358 ELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
           EL    + +  L NLEIL++ +N    +  L    G L+ L+ LDL  N+I        R
Sbjct: 117 ELRDTDS-LIHLKNLEILSIRNNKLKSIVML----GFLSKLEVLDLHGNEITNTGG-LTR 170

Query: 417 LDKLIKLNLEENPMVIPPVEVVKE 440
           L K+  ++L     V  PV+   E
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPE 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 82.0 bits (203), Expect = 1e-17
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 13/232 (5%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
             ++  +  +  ++ L         L+ + LS+N +  +   +  L  LEEL++  N L+
Sbjct: 41  SGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLK 98

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
            L         L  L +  N+L    DS+ H ++L  L    N+L  +   +G  L  L+
Sbjct: 99  NLNGIPSA--CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGF-LSKLE 153

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
            L +  N+I      +  +  +  +D    +    P  +     L I N   +       
Sbjct: 154 VLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP--VKYQPELYITNTVKDPDGRWIS 210

Query: 388 PETFGELTNLKELDLSNNQIHALPN---TFGRLDKLIKLNLEENPMVIPPVE 436
           P       +  +  +              F     + +     +  V  P++
Sbjct: 211 PYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTVTQPIK 262

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  103 bits (259), Expect = 8e-25
 Identities = 51/241 (21%), Positives = 83/241 (34%), Gaps = 27/241 (11%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL---EVIPDSIAGLVNLEELNLASNL 265
           ++    + SR L       G I+GL+ ++L N  +      P   A   +L  LNL +  
Sbjct: 74  TVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 266 LETLPDSIG-----LLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRL----AYL 315
             T    +      L   LK+L ++         + +    +L  LD S N        +
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 316 PTNIGHELVNLQKLLVPLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIG--KL 369
                 +   LQ L +    +                L+ LD   N L            
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 370 TNLEILNVSSNFTDMKELPETFGEL-TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           + L  LN+S        L +    L   L  LDLS N++   P+    L ++  L+L+ N
Sbjct: 253 SQLNSLNLSFT-----GLKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306

Query: 429 P 429
           P
Sbjct: 307 P 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.3 bits (242), Expect = 1e-22
 Identities = 42/216 (19%), Positives = 69/216 (31%), Gaps = 21/216 (9%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVN-----LEELNLA 262
           + L   +L   G    P        L +++L N         +A L       L+ L++A
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 263 SNLLETLP-DSIGLLDNLKILDVSGNKLSALPDSISHC-----RSLVELDASFNRLAYLP 316
                    + + +   L  LD+S N        IS        +L  L      +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 317 TNIG---HELVNLQKLLVPLNKIRFLPTSIG--EMASLRHLDAHFNELHGLPATIGKLTN 371
                     V LQ L +  N +R    +      + L  L+  F  L  +P  +     
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAK 275

Query: 372 LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI 407
           L +L++S N   +   P    EL  +  L L  N  
Sbjct: 276 LSVLDLSYN--RLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 40/241 (16%), Positives = 74/241 (30%), Gaps = 38/241 (15%)

Query: 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLV------NLEELN 260
           G+SLE +         L +    I  L L  L+     +    + G +       L+EL 
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 261 LASN-LLETLPDSIGLLD--NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPT 317
           L +  +  T P  +      +L IL++     +     ++  +  ++             
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP------------ 149

Query: 318 NIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPATI-----GKLTN 371
                   L+ L +            +    +L  LD   N   G    I      K   
Sbjct: 150 -------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 372 LEILNVSSNFTDM--KELPETFGELTNLKELDLSNNQIHALPN--TFGRLDKLIKLNLEE 427
           L++L + +   +               L+ LDLS+N +       +     +L  LNL  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 428 N 428
            
Sbjct: 263 T 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 3e-13
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 202 LQEAAGKSLEQVDLSSRGLRFLPEAFGRIAG----LRLMSLSNNHLEVIPDSI--AGLVN 255
           L      +L+ + L + G+         +A     L+ + LS+N L     +        
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 256 LEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312
           L  LNL+   L+ +P   GL   L +LD+S N+L   P S      +  L    N  
Sbjct: 255 LNSLNLSFTGLKQVPK--GLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPF 308

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  103 bits (257), Expect = 1e-23
 Identities = 52/321 (16%), Positives = 105/321 (32%), Gaps = 10/321 (3%)

Query: 117 IRETDVDQFEWRVQLADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKI 176
           +   +       V ++ +E  L    ++      ++  L  M +     ++         
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 177 YERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLM 236
                  +     + +++ +    ++      S ++  L                 L   
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTG-SDSQKECVLLKDRPECWCRDSATDEQLFRC 354

Query: 237 SLSNNHLEVIPDSIAGLVNLEELNLASNL-LETLPDSIGLLDNLKILDVSGNKLSALPDS 295
            LS     V+   +     L+EL   +   L T+   +  LD L     +    S L  +
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-KA 413

Query: 296 ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAH 355
           +   R+    D     L         E  +++ L +    +  L   + ++  + HLD  
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLK-MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLS 471

Query: 356 FNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN--T 413
            N L  LP  +  L  LE+L  S N   ++ +      L  L+EL L NN++        
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNA--LENVDG-VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 414 FGRLDKLIKLNLEENPMVIPP 434
                +L+ LNL+ N +    
Sbjct: 529 LVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 81.0 bits (199), Expect = 2e-16
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL 269
               DL S+ L          A +R++ L++  L V+   +  L+ +  L+L+ N L  L
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRAL 478

Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPT--NIGHELVNLQ 327
           P ++  L  L++L  S N L  +   +++   L EL    NRL        +      L 
Sbjct: 479 PPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLV 536

Query: 328 KLLVPLNKIRFLPTSIGEMASL 349
            L +  N +         +A +
Sbjct: 537 LLNLQGNSLCQEEGIQERLAEM 558

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 95.9 bits (239), Expect = 7e-23
 Identities = 35/151 (23%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 283 DVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS 342
           D  G  L+ +P ++    ++ E+    N +  +P         L+++ +  N+I  L   
Sbjct: 17  DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74

Query: 343 I-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKE 399
               + SL  L  + N++  LP ++   L +L++L +++N   +  L    F +L NL  
Sbjct: 75  AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQDLHNLNL 132

Query: 400 LDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
           L L +N++  +   TF  L  +  ++L +NP
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLL 266
           ++ ++ L    ++ +P  AF     LR + LSNN +  +      GL +L  L L  N +
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92

Query: 267 ETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELV 324
             LP S+   L +L++L ++ NK++ L         +L  L    N+L  +       L 
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 325 NLQKL 329
            +Q +
Sbjct: 153 AIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 347 ASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSN 404
            ++  +    N +  +P         L  +++S+N   + EL    F  L +L  L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--QISELAPDAFQGLRSLNSLVLYG 89

Query: 405 NQIHALP-NTFGRLDKLIKLNLEENPMV-IPP 434
           N+I  LP + F  L  L  L L  N +  +  
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 98.4 bits (245), Expect = 1e-22
 Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 15/202 (7%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGL--LDNLKILDVSGNKLSALPDSI 296
           S   L  +P S+        L+L+ N L  L        L NL  L +S N L+ +    
Sbjct: 26  SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83

Query: 297 -SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDA 354
                +L  LD S N L  L   +  +L  L+ LL+  N I  +  +   +MA L+ L  
Sbjct: 84  FVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 355 HFNELHGLPA----TIGKLTNLEILNVSSNFTDMKELP-ETFGELTNLKE--LDLSNNQI 407
             N++   P        KL  L +L++SSN   +K+LP     +L    +  L L NN +
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNK--LKKLPLTDLQKLPAWVKNGLYLHNNPL 201

Query: 408 HALPNTFGRLDKLIKLNLEENP 429
                 +          L    
Sbjct: 202 ECDCKLYQLFSHWQYRQLSSVM 223

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 87.2 bits (216), Expect = 8e-19
 Identities = 48/242 (19%), Positives = 90/242 (37%), Gaps = 42/242 (17%)

Query: 213 VDLSSRGLRFLPE-----------------------AFGRIAGLRLMSLSNNHLEVIPDS 249
           +  S + L  +P+                          R+  L  + LS+NHL  I   
Sbjct: 23  LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82

Query: 250 I-AGLVNLEELNLASNLLETLPDSI--GLLDNLKILDVSGNKLSALPDSI-SHCRSLVEL 305
               + NL  L+L+SN L TL + +   L   L++L +  N +  +  +       L +L
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 306 DASFNRLAYLPTNI---GHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL 362
             S N+++  P  +   G++L  L  L +  NK++ LP    ++  L     +   LH  
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNN 199

Query: 363 P-----ATIGKLTNLEILNVSSNFTDMKEL----PETFGELTNLKELDLSNNQIHALPNT 413
           P           ++ +   +SS     ++L     +    + +L   + S  +  A    
Sbjct: 200 PLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAH 259

Query: 414 FG 415
            G
Sbjct: 260 LG 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 1e-15
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
            +L  + LS   L F+   AF  +  LR + LS+NHL  + + + + L  LE L L +N 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALP----DSISHCRSLVELDASFNRLAYLPTNIG 320
           +  +  +    +  L+ L +S N++S  P       +    L+ LD S N+L  LP    
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183

Query: 321 HELVNLQKLLVPLN 334
            +L    K  + L+
Sbjct: 184 QKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 37/160 (23%), Positives = 50/160 (31%), Gaps = 52/160 (32%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG-HELVNLQKLLVPLNKI 336
              IL  S  +L  +P S+        LD S N L+ L        L NL  LL+  N +
Sbjct: 19  ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 337 RFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTN 396
            F+                                                 E F  + N
Sbjct: 77  NFIS-----------------------------------------------SEAFVPVPN 89

Query: 397 LKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM-VIPP 434
           L+ LDLS+N +H L    F  L  L  L L  N + V+  
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 93.5 bits (233), Expect = 3e-22
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 10/177 (5%)

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP 293
             ++           + A + +L  + LA+  +  L   I    N+K L ++    +   
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY- 81

Query: 294 DSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRH 351
           + IS   +L  L      +      N+   L +L  L +  +       T I  +  +  
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQI 407
           +D  +N        +  L  L+ LN+  +   D + +     +   L +L   +  I
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI----EDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 316 PTNIGHELVNLQKLL-VPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEI 374
             N+       +  L   L +      +  +M SL ++      +  L   I    N++ 
Sbjct: 12  QDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-IEYAHNIKD 70

Query: 375 LNVSSN-FTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVI 432
           L +++   T+   +      L+NL+ L +    +          L  L  L++  +    
Sbjct: 71  LTINNIHATNYNPI----SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 433 PPVE 436
             + 
Sbjct: 127 SILT 130

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 5e-10
 Identities = 19/108 (17%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265
            +LE++ +  + +          +  L L+ +S++  +  I   I  L  +  ++L+ N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 266 LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLA 313
             T    +  L  LK L++  + +      I     L +L A    + 
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 2/86 (2%)

Query: 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
            SL  +D+S              +  +  + LS N        +  L  L+ LN+  + +
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSAL 292
                 I     L  L      +   
Sbjct: 172 HDY-RGIEDFPKLNQLYAFSQTIGGK 196

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 93.2 bits (232), Expect = 6e-22
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTN-IGHELVNLQKLLVPLNKI 336
               +D S  KL+ +P+ I   +   EL  + N    L    I  +L  L+K+    NKI
Sbjct: 12  EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGE 393
             +        + +  +    N L  +   +   L +L+ L + SN   +  +   +F  
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN--RITCVGNDSFIG 127

Query: 394 LTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
           L++++ L L +NQI  +    F  L  L  LNL  NP
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 209 SLEQVDLSSRGLRFLPE--AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNL 265
              ++ L++     L     F ++  LR ++ SNN +  I +    G   + E+ L SN 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 266 LETLPDSI-GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           LE +   +   L++LK L +  N+++ + +       S+  L    N++  +       L
Sbjct: 93  LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 324 VNLQKL 329
            +L  L
Sbjct: 153 HSLSTL 158

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 92.5 bits (230), Expect = 2e-21
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 7/155 (4%)

Query: 280 KILDVSGNKLSALPDSISH-CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338
           + LD+    L+ L D+       L  L+  +N+L  L   +  +L  L  L +  N++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 339 LPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
           LP  +   +  L  L    N+L  LP+ +  +LT L+ L +++N   ++ +P   F +LT
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLT 155

Query: 396 NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
           NL+ L LS NQ+ ++P   F RL KL  + L  N 
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 89.4 bits (222), Expect = 3e-20
 Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 277 DNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
           +  K +D  G  L ++P  I       +LD     LA L       L  L  L +  N++
Sbjct: 14  EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71

Query: 337 RFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGE 393
           + L   +  ++  L  L    N+L  LP  +   LT L+ L +  N   +K LP   F  
Sbjct: 72  QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN--QLKSLPSGVFDR 129

Query: 394 LTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
           LT LKEL L+ NQ+ ++P   F +L  L  L+L  N
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 84.4 bits (209), Expect = 9e-19
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 283 DVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS 342
           D    + +++P  I    +   L    N++  L   +   L+NL++L +  N++  LP  
Sbjct: 25  DCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 343 I-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPETFGELTNLKEL 400
           +   +  L  LD   N+L  LP+ +  +L +L+ L +  N   + ELP     LT+L  L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN--KLTELPRGIERLTHLTHL 140

Query: 401 DLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            L  NQ+ ++P+  F RL  L    L  NP
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGL 362
            +D    R A +P  I     N Q L +  N+I  L       + +L+ L    N+L  L
Sbjct: 23  TVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 363 PATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKL 420
           P  +   LT L +L++ +N   +  LP   F  L +LKEL +  N++  LP    RL  L
Sbjct: 80  PVGVFDSLTQLTVLDLGTN--QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHL 137

Query: 421 IKLNLEEN 428
             L L++N
Sbjct: 138 THLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLE 267
           S   VD  S+    +P   G     +++ L +N +  +   +   L+NL+EL L SN L 
Sbjct: 20  SGTTVDCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77

Query: 268 TLPDSI-GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
            LP  +   L  L +LD+  N+L+ LP ++            F+RL           V+L
Sbjct: 78  ALPVGVFDSLTQLTVLDLGTNQLTVLPSAV------------FDRL-----------VHL 114

Query: 327 QKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
           ++L +  NK+  LP  I  +  L HL    N+L  +P     +L++L    +  N
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 29/178 (16%)

Query: 255 NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH-CRSLVELDASFNRLA 313
           +   +   S    ++P   G+      LD+  N L +LP+ +     SL +L    N+L 
Sbjct: 8   SGTTVECYSQGRTSVP--TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65

Query: 314 YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLE 373
            LP  + ++L +L  L +  N+++ LP  +            F+          KLT L+
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQLQSLPNGV------------FD----------KLTQLK 103

Query: 374 ILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            L +++N   ++ LP+  F +LT LK+L L  NQ+ ++P+  F RL  L  + L +NP
Sbjct: 104 ELALNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 8/125 (6%)

Query: 211 EQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLET 268
             +DL +  L+ LP   F  +  L  + L  N L+ +P+ +   L +L  LNL++N L++
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 269 LPDSIGLLD---NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELV 324
           LP+  G+ D    LK L ++ N+L +LPD +      L +L    N+L  +P  +   L 
Sbjct: 91  LPN--GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 325 NLQKL 329
           +LQ +
Sbjct: 149 SLQYI 153

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP 363
            +  S   L  LP  I     ++ +L +  N+   +P  +     L  +D   N +  L 
Sbjct: 14  VVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 364 A-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKL 420
             +   +T L  L +S N   ++ +P  TF  L +L+ L L  N I  +P   F  L  L
Sbjct: 71  NQSFSNMTQLLTLILSYN--RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 421 IKLNLEENP 429
             L +  NP
Sbjct: 129 SHLAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 50/168 (29%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH 298
           SN  L+V+P  I    ++ EL L  N    +P  +    +L ++D+S N++S L +    
Sbjct: 18  SNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-- 73

Query: 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE 358
                     F+            +  L  L++  N++R +P               F+ 
Sbjct: 74  ----------FSN-----------MTQLLTLILSYNRLRCIP------------PRTFD- 99

Query: 359 LHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNN 405
                     L +L +L++  N  D+  +PE  F +L+ L  L +  N
Sbjct: 100 ---------GLKSLRLLSLHGN--DISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 213 VDLSSRGLRFLPEAFGRIAGL----RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
           V  S++GL+ LP       G+      + L  N   ++P  ++   +L  ++L++N + T
Sbjct: 15  VRCSNKGLKVLP------KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68

Query: 269 LPDSIGLLD---NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELV 324
           L +          L  L +S N+L  +P       +SL  L    N ++ +P    ++L 
Sbjct: 69  LSN--QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126

Query: 325 NLQKL 329
            L  L
Sbjct: 127 ALSHL 131

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 10/131 (7%)

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS--IGEMASLRHLDAHFNELHG 361
            +D +   L  +P +I    ++  +LL+  N++  + +    G +  L  L+   N+L G
Sbjct: 12  TVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 362 LPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLD 418
           +        ++++ L +  N   +KE+    F  L  LK L+L +NQI  +   +F  L+
Sbjct: 69  IEPNAFEGASHIQELQLGEN--KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 419 KLIKLNLEENP 429
            L  LNL  NP
Sbjct: 127 SLTSLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 25/127 (19%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 213 VDLSSRGLRFLPEAFGRIAGL----RLMSLSNNHLEVIPDSIA--GLVNLEELNLASNLL 266
           VD + RGL+ +P        +      + L++N L  I        L +L +L L  N L
Sbjct: 13  VDCTGRGLKEIP------RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 267 ETLPDSIGLLD---NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHE 322
             +       +   +++ L +  NK+  + + +      L  L+   N+++ +       
Sbjct: 67  TGIEP--NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 323 LVNLQKL 329
           L +L  L
Sbjct: 125 LNSLTSL 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 209 SLEQVDL--SSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL 266
             E+V+L      +  +      +   + ++LS N++E I  S++G+ NL  L+L  NL+
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLI 82

Query: 267 ETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH--ELV 324
           + + +   + D L+ L +S N++++L   I    +L  L  S N++      I     L 
Sbjct: 83  KKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAALD 140

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRH 351
            L+ LL+  N +          +  R 
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYRI 167

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 9/133 (6%)

Query: 302 LVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG 361
            VEL      +  +   +   L   + L +  N I  + +S+  M +LR L    N +  
Sbjct: 27  KVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK 84

Query: 362 LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLD 418
           +         LE L +S N    +  +     +L NL+ L +SNN+I      +    LD
Sbjct: 85  IENLDAVADTLEELWISYNQIASLSGI----EKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 419 KLIKLNLEENPMV 431
           KL  L L  NP+ 
Sbjct: 141 KLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 14/113 (12%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
           ++L  + L    ++ +         L  + +S N +  +   I  LVNL  L +++N + 
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKIT 128

Query: 268 TLPD--SIGLLDNLKILDVSGNKLSALPDS-----------ISHCRSLVELDA 307
              +   +  LD L+ L ++GN L                 +    +L +LD 
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
             T  E + +      ++++  T   L   K L LS N I  + +    ++ L  L+L  
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGR 79

Query: 428 N 428
           N
Sbjct: 80  N 80

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 236 MSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDS 295
           + L+   +E         V   EL+L    +  + +    LD    +D S N++  L D 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 296 ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT--SIGEMASLRHLD 353
               R L  L  + NR+  +   +   L +L +L++  N +  L     +  + SL +L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 354 AHFNELHGLPA----TIGKLTNLEILN 376
              N +          I K+  + +L+
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 7/98 (7%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292
            R + L    + VI +  A L   + ++ + N +  L D   LL  LK L V+ N++  +
Sbjct: 21  DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79

Query: 293 PDSISH-CRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
            + +      L EL  + N L  L      +L  L  L
Sbjct: 80  GEGLDQALPDLTELILTNNSLVEL-----GDLDPLASL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 322 ELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNF 381
             V  ++L +   KI  +      +     +D   NE+  L      L  L+ L V++N 
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 382 TDMKELPETFGE-LTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENP 429
             +  + E   + L +L EL L+NN +  L   +    L  L  L +  NP
Sbjct: 76  --ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 28/149 (18%)

Query: 283 DVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS 342
             +   L+++P  I    S   L+   N+L  LP  +  +L  L KL +  N+I+ LP  
Sbjct: 13  RCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70

Query: 343 IGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELD 401
           +            F+          KLT L IL +  N   ++ LP   F +LT LKEL 
Sbjct: 71  V------------FD----------KLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELA 106

Query: 402 LSNNQIHALPN-TFGRLDKLIKLNLEENP 429
           L  NQ+ ++P+  F RL  L K+ L  NP
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 9/126 (7%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLE 267
           S  ++  +S+GL  +P   G  +    + L +N L+ +P  +   L  L +L+L+ N ++
Sbjct: 8   SGTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65

Query: 268 TLPDSIGLLD---NLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHEL 323
           +LPD  G+ D    L IL +  NKL +LP+ +      L EL    N+L  +P  I   L
Sbjct: 66  SLPD--GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123

Query: 324 VNLQKL 329
            +LQK+
Sbjct: 124 TSLQKI 129

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 59/282 (20%)

Query: 206 AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-----EVIPDSIAGLVNLEELN 260
            GKSL+   +++   + +         ++ + LS N +       + ++IA   +LE   
Sbjct: 7   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66

Query: 261 LASNLLETLPDSI---------GLLDN--LKILDVSGNKL-----SALPDSISHCRSLVE 304
            +      + D I          LL    L  + +S N         L D +S    L  
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 305 LDASFNRL---------AYLPTNIGHELV----NLQKLLVPLNKI-----RFLPTSIGEM 346
           L    N L           L     ++       L+ ++   N++     +    +    
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186

Query: 347 ASLRHLDAHFNELH--GLPATIGKL----TNLEILNVSSN-FTD--MKELPETFGELTNL 397
             L  +    N +   G+   + +       L++L++  N FT      L        NL
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246

Query: 398 KELDLSNNQI---------HALPNTFGRLDKLIKLNLEENPM 430
           +EL L++  +          A          L  L L+ N +
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSK--LENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 47/263 (17%), Positives = 81/263 (30%), Gaps = 70/263 (26%)

Query: 208 KSLEQVDLSS-----------RGLRFLPEAFGRIAGLRLMSLSNNHL-----EVIPDSIA 251
           K LE  + S              LR L +A  +   L  + LS+N       E + D ++
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 252 GLVNLEELNLASN---------LLETLPDSIGLLD-----NLKILDVSGNKL-----SAL 292
               LE L L +N         +   L +            L+ +    N+L        
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 293 PDSISHCRSLVELDASFNRLAYLPTNIGHELV------------NLQKLLVPLNKI---- 336
             +    R L  +    N        I  E +             L+ L +  N      
Sbjct: 180 AKTFQSHRLLHTVKMVQN-------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 337 -RFLPTSIGEMASLRHLDAHFNEL--HGLPA-----TIGKLTNLEILNVSSN-FTD--MK 385
              L  ++    +LR L  +   L   G  A     +  +   L+ L +  N      ++
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292

Query: 386 ELPETFGE-LTNLKELDLSNNQI 407
            L     E + +L  L+L+ N+ 
Sbjct: 293 TLKTVIDEKMPDLLFLELNGNRF 315

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 60/276 (21%), Positives = 92/276 (33%), Gaps = 63/276 (22%)

Query: 208 KSLEQVDLSS-----RGLRFLPEAFGRI-AGLRLMSLSNNHL-----EVIPDSIAGLVNL 256
            +L+++ LS       GL+ L E        L  + L    L     E +   +    + 
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172

Query: 257 EELNLASN---------LLETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSL 302
           +EL +++N         L + L DS      L+ L +    ++      L   ++   SL
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDS---PCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 303 VELDASFNRL-----AYLPTNIGHELVNLQKLLVPLNKI-----RFLPTSIGEMASLRHL 352
            EL    N+L     A L   + H    L+ L +    I       L   +    SL+ L
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL 289

Query: 353 DAHFNELH--GLPATIGKL----TNLEILNVSSN-FTD--MKELPETFGELTNLKELDLS 403
               NEL   G       L      LE L V S  FT            +   L EL +S
Sbjct: 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349

Query: 404 NNQIH---------AL--PNTFGRLDKLIKLNLEEN 428
           NN++           L  P +      L  L L + 
Sbjct: 350 NNRLEDAGVRELCQGLGQPGS-----VLRVLWLADC 380

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 48/223 (21%), Positives = 72/223 (32%), Gaps = 41/223 (18%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET 268
           SL+   L+  G   L      +  L+ + LS+N L       AGL  L E  L       
Sbjct: 91  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-----GDAGLQLLCEGLLDPQC--- 142

Query: 269 LPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSLVELDASFNRL-----AYLPTN 318
                     L+ L +    LS      L   +       EL  S N +       L   
Sbjct: 143 ---------RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193

Query: 319 IGHELVNLQKLLVPLNKI-----RFLPTSIGEMASLRHLDAHFNELHG------LPATIG 367
           +      L+ L +    +     R L   +   ASLR L    N+L         P  + 
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 368 KLTNLEILNVSSN-FTD--MKELPETFGELTNLKELDLSNNQI 407
             + L  L +     T     +L        +LKEL L+ N++
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 38/209 (18%)

Query: 255 NLEELNLASNLL--ETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSLVELDA 307
           +++ L++    L      + + LL   +++ +    L+      +  ++    +L EL+ 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 308 SFNRL-----AYLPTNIGHELVNLQKLLVPLNKI-----RFLPTSIGEMASLRHLDAHFN 357
             N L       +   +      +QKL +    +       L +++  + +L+ L    N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 358 ELH--GLPATIGKL----TNLEILNVSSN-FTD--MKELPETFGELTNLKELDLSNNQI- 407
            L   GL      L      LE L +     +    + L        + KEL +SNN I 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 408 --------HALPNTFGRLDKLIKLNLEEN 428
                     L ++     +L  L LE  
Sbjct: 184 EAGVRVLCQGLKDS---PCQLEALKLESC 209

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 46/245 (18%), Positives = 81/245 (33%), Gaps = 49/245 (20%)

Query: 208 KSLEQVDLSS-----RGLRFLPEAFGR-IAGLRLMSLSNNHL-----EVIPDSIAGLVNL 256
              +++ +S+      G+R L +        L  + L +  +       +   +A   +L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229

Query: 257 EELNLASN---------LLETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSL 302
            EL L SN         L   L         L+ L +    ++      L   +    SL
Sbjct: 230 RELALGSNKLGDVGMAELCPGLLHP---SSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 303 VELDASFNRL-----AYLPTNIGHELVNLQKLLVPLNKI-----RFLPTSIGEMASLRHL 352
            EL  + N L       L   +      L+ L V              + + +   L  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 353 DAHFNELH--GLPATIGKL-----TNLEILNVSSN-FTD--MKELPETFGELTNLKELDL 402
               N L   G+   + +      + L +L ++    +D     L  T     +L+ELDL
Sbjct: 347 QISNNRLEDAGVRE-LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 403 SNNQI 407
           SNN +
Sbjct: 406 SNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 57/254 (22%)

Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL 269
           L+   L+    + +  A      L  ++L +N L        G+  + +     +     
Sbjct: 35  LDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-----VGVHCVLQGLQTPSC---- 85

Query: 270 PDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSLVELDASFNRL-----AYLPTNI 319
                    ++ L +    L+      L  ++    +L EL  S N L       L   +
Sbjct: 86  --------KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL 137

Query: 320 GHELVNLQKLLVPLNKI-----RFLPTSIGEMASLRHLDAHFNEL-----HGLPATIGKL 369
                 L+KL +    +       L + +      + L    N++       L   +   
Sbjct: 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 370 T-NLEILNVSSN-FTD--MKELPETFGELTNLKELDLSNNQIHA-----------LPNTF 414
              LE L + S   T    ++L        +L+EL L +N++              P++ 
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS- 256

Query: 415 GRLDKLIKLNLEEN 428
               +L  L + E 
Sbjct: 257 ----RLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 55/234 (23%)

Query: 208 KSLEQVDLSS-----RGLRFLPEAFGRI-AGLRLMSLSNNHL-----EVIPDSIAGLVNL 256
            SL ++ L S      G+  L        + LR + +    +       +   +    +L
Sbjct: 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286

Query: 257 EELNLASN---------LLETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSL 302
           +EL+LA N         L ETL +       L+ L V     +          ++  R L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEP---GCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 303 VELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNEL--- 359
           +EL  S NRL     + G  +  L + L                  LR L     ++   
Sbjct: 344 LELQISNNRL----EDAG--VRELCQGLGQPGS------------VLRVLWLADCDVSDS 385

Query: 360 --HGLPATIGKLTNLEILNVSSN-FTD--MKELPETFGEL-TNLKELDLSNNQI 407
               L AT+    +L  L++S+N   D  + +L E+  +    L++L L +   
Sbjct: 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 5/86 (5%)

Query: 347 ASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSN 404
            + + L  + N++  L   +  +LT L  L++ +N   +  LP   F +LT L +L L++
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN--QLTVLPAGVFDKLTQLTQLSLND 87

Query: 405 NQIHALPN-TFGRLDKLIKLNLEENP 429
           NQ+ ++P   F  L  L  + L  NP
Sbjct: 88  NQLKSIPRGAFDNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET-FGELTNLKELDLSNNQIHAL 410
           +D     L  +P  I   T  ++L +  N   + +L    F  LT L  LDL NNQ+  L
Sbjct: 14  VDCSGKSLASVPTGI--PTTTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 411 PN-TFGRLDKLIKLNLEEN 428
           P   F +L +L +L+L +N
Sbjct: 70  PAGVFDKLTQLTQLSLNDN 88

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP----DSIAGLVNLEELNLASN 264
           S   VD S + L  +P   G     +++ L +N +  +     D    L  L  L+L +N
Sbjct: 10  SGTTVDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDR---LTQLTRLDLDNN 64

Query: 265 LLETLPDSIGLLD---NLKILDVSGNKLSALPD 294
            L  LP   G+ D    L  L ++ N+L ++P 
Sbjct: 65  QLTVLPA--GVFDKLTQLTQLSLNDNQLKSIPR 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 212 QVDLSSRGLRFLPEAFGRIAGLRLMSLS-NNHLEVIPD-SIAGLVNLEELNLASNLLETL 269
            +  +  G             L  + +    HL+ +    + GL  L  L +  + L  +
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 270 -PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312
            PD+      L  L++S N L +L        SL EL  S N L
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 29/137 (21%)

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKL-LVPLNKIRFLPT-SIGEMASLRHLDAH 355
                  L  + +       ++     NL +L +     ++ L    +  +  LR+L   
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 356 FNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTF 414
            + L  +                         P+ F     L  L+LS N + +L   T 
Sbjct: 65  KSGLRFVA------------------------PDAFHFTPRLSRLNLSFNALESLSWKTV 100

Query: 415 GRLDKLIKLNLEENPMV 431
             L  L +L L  NP+ 
Sbjct: 101 QGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 23/123 (18%)

Query: 239 SNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD-SIS 297
           + +        + G  NL EL + +                         L  L    + 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQ----------------------QHLQHLELRDLR 53

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
               L  L    + L ++  +  H    L +L +  N +  L     +  SL+ L    N
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Query: 358 ELH 360
            LH
Sbjct: 114 PLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 208 KSLEQVDLSS-RGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASN 264
           ++L ++ + + + L+ L       +  LR +++  + L  + PD+      L  LNL+ N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 265 LLETLPDSIGLLDNLKILDVSGNKL 289
            LE+L        +L+ L +SGN L
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNPL 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 347 ASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSN 404
              + L  + N++  L   +   L NL+ L  +SN   +  +P   F +LT L +LDL++
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN--KLTAIPTGVFDKLTQLTQLDLND 90

Query: 405 NQIHALPN-TFGRLDKLIKLNLEENP 429
           N + ++P   F  L  L  + L  NP
Sbjct: 91  NHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET-FGELTNLKELDLSNNQIHAL 410
           ++     L  +PA I   T+ + L +++N   + +L    F  L NL++L  ++N++ A+
Sbjct: 17  VNCQNIRLASVPAGI--PTDKQRLWLNNN--QITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 411 PN-TFGRLDKLIKLNLEEN 428
           P   F +L +L +L+L +N
Sbjct: 73  PTGVFDKLTQLTQLDLNDN 91

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP----DSIAGLVNLEELNLASN 264
               V+  +  L  +P   G     + + L+NN +  +     D    LVNL++L   SN
Sbjct: 13  DQTLVNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDH---LVNLQQLYFNSN 67

Query: 265 LLETLPDSIGLLD---NLKILDVSGNKLSALPD 294
            L  +P   G+ D    L  LD++ N L ++P 
Sbjct: 68  KLTAIPT--GVFDKLTQLTQLDLNDNHLKSIPR 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 75/478 (15%), Positives = 151/478 (31%), Gaps = 127/478 (26%)

Query: 52  DQMPHLSDPKLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDSELAKS-- 109
           D +    D  + +   + + D+   +S+L         E ID     I+     ++ +  
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDM--PKSILSK-------EEIDH----IIMSKDAVSGTLR 66

Query: 110 LEGIVHSIRETDVDQF---------EWRVQLADKEKALREDSAKEKNACKKILELDDMHE 160
           L   + S +E  V +F         ++   L    K   E           I + D ++ 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKT--EQRQPSMMTRMYIEQRDRLYN 121

Query: 161 AYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKS-LEQVDLSSRG 219
             +   K    RL    +  +   E    +R   N  + G+L   +GK+ +         
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLE----LRPAKNVLIDGVL--GSGKTWV--ALDVCLS 173

Query: 220 LRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEEL--NLASNLLETLPDSIGLLD 277
            +   +   +I     ++L N +    P+++  L  L++L   +  N      D      
Sbjct: 174 YKVQCKMDFKIF---WLNLKNCN---SPETV--LEMLQKLLYQIDPNWTS-RSDHS---S 221

Query: 278 NLKI-LDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH----ELVNLQ-KLLV 331
           N+K+ +     +L  L  S  +   L+ L            N+ +       NL  K+L+
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLL-----------NVQNAKAWNAFNLSCKILL 270

Query: 332 ---PLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMK--E 386
                    FL  +     SL H                  T  E+ ++   + D +  +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTL-------------TPDEVKSLLLKYLDCRPQD 317

Query: 387 LPE-----------TFGELTNLKE-LDLSNNQIHALPNTFGRLDKLIKLNLEE-NP---- 429
           LP               E   +++ L   +N  H       +L  +I+ +L    P    
Sbjct: 318 LPREVLTTNPRRLSIIAES--IRDGLATWDNWKHV---NCDKLTTIIESSLNVLEPAEYR 372

Query: 430 -----MVIPPVEV-VKEGVGAVKTFMAKRWLDILLEEERRSMLKL------EGNNNEG 475
                + + P    +   +      ++  W D++  +    + KL      E    E 
Sbjct: 373 KMFDRLSVFPPSAHIPTIL------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 59/448 (13%), Positives = 138/448 (30%), Gaps = 133/448 (29%)

Query: 15  MQRLPT-FGPRTAAEYDVEQPDPSSSGQAQSQKNP-----------VIVDQMPHLSDPKL 62
           +Q+L     P   +  D            Q++              +++    ++ + K 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKA 258

Query: 63  VSAM----------R-RAIHDVYQTRSVLQ-TLGPRPDHETIDKTK---ARIVEIDSE-- 105
            +A           R + + D     +    +L       T D+ K    + ++   +  
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 106 ---------LAKSLEGIVHSIRETDVDQFE-WRVQLADKEKALREDSAKEKNACKKILEL 155
                       S+  I  SIR+  +  ++ W+    DK   + E       +   +LE 
Sbjct: 319 PREVLTTNPRRLSI--IAESIRD-GLATWDNWKHVNCDKLTTIIE-------SSLNVLEP 368

Query: 156 DDMHEAYEKM--LKEAEERLVKIYERAENGEEEVPPV--REEVNEEVMGLLQEAAGKSLE 211
            +  + ++++     +      I          +  +   + +  +VM ++ +    SL 
Sbjct: 369 AEYRKMFDRLSVFPPS----AHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSL- 416

Query: 212 QVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD 271
              +  +              + + S+   +LE+       L N   L+ +         
Sbjct: 417 ---VEKQPKEST---------ISIPSI---YLELKVK----LENEYALHRS--------- 448

Query: 272 SIGLLDNLKILD-VSGNKLSALPDSISHCRSLVELDA-SFNRLAYLPTNIGH-ELVNLQK 328
              ++D+  I      + L               LD   ++ + +   NI H E + L +
Sbjct: 449 ---IVDHYNIPKTFDSDDLIPPY-----------LDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLE--ILNVSSNFTDMKE 386
           ++  L+  RFL         +RH    +N    +  T+ +L   +  I +    +  +  
Sbjct: 495 MVF-LD-FRFLE------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 387 LPETF----------GELTNLKELDLSN 404
               F           + T+L  + L  
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMA 574

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 45/251 (17%), Positives = 86/251 (34%), Gaps = 49/251 (19%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRL--MSLSNNHLEVIPDSIAGLVNLEELNLAS--- 263
                      +  +  ++  +  +RL  M ++++ LE+I        N + L L+S   
Sbjct: 86  PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI---AKSFKNFKVLVLSSCEG 142

Query: 264 ---NLLETLPDSIGLLDNLKILDVSGNKLSALPDSI-----SHCRSLVELDASFNRLAYL 315
              + L  +  +     NLK LD+  + +  +             SLV L+     ++ L
Sbjct: 143 FSTDGLAAIAAT---CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN-----ISCL 194

Query: 316 PTNIGHELV--------NLQKL----LVPLNKIRFLPTSIGEMASLRHLD-------AHF 356
            + +    +        NL+ L     VPL K+  L   +     L  L           
Sbjct: 195 ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL---LQRAPQLEELGTGGYTAEVRP 251

Query: 357 NELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI--HALPNTF 414
           +   GL   +     L  L+   +      LP  +   + L  L+LS   +  + L    
Sbjct: 252 DVYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLL 310

Query: 415 GRLDKLIKLNL 425
            +  KL +L +
Sbjct: 311 CQCPKLQRLWV 321

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 30/227 (13%)

Query: 205 AAGKSLEQVDLSS-----RGLRFLPEAFGRIAGLRL---MSLSNNHLEVIPDSIAGLVNL 256
           ++   LE++ L         L  + ++F     L L      S + L  I    A   NL
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNL 158

Query: 257 EELNLASNLLETLPDSI-----GLLDNLKILDVSGNKL----SALPDSISHCRSLVELDA 307
           +EL+L  + ++ +             +L  L++S        SAL   ++ C +L  L  
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 308 SFNRLAYLPTNIGHELVNLQKL-------LVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360
           +          +      L++L        V  +    L  ++     LR L   F +  
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAV 277

Query: 361 --GLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN 405
              LPA     + L  LN+S       +L +   +   L+ L + + 
Sbjct: 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 29/222 (13%)

Query: 208 KSLEQVDL------SSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI-----AGLVNL 256
           K+ + + L      S+ GL  +         L+ + L  + ++ +             +L
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRN---LKELDLRESDVDDVSGHWLSHFPDTYTSL 186

Query: 257 EELNLASNLLETLPDSIGLLD----NLKILDVSGN-KLSALPDSISHCRSLVELDASFNR 311
             LN++    E    ++  L     NLK L ++    L  L   +     L EL      
Sbjct: 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246

Query: 312 L---AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMA----SLRHLDAHFNEL--HGL 362
                 + + +   L   ++L         +P  +  +      L  L+  +  +  + L
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306

Query: 363 PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
              + +   L+ L V     D   L        +L+EL +  
Sbjct: 307 VKLLCQCPKLQRLWVLDYIED-AGLEVLASTCKDLRELRVFP 347

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 255 NLEELNL--ASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312
           +++EL L  + +    L       + L+ L      L+++ + +     L +L+ S NR+
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRV 76

Query: 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPT--SIGEMASLRHLDAHFNELHGLPA----TI 366
           +     +  +  NL  L +  NKI+ L T   + ++ +L+ LD    E+  L        
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 367 GKLTNLEIL 375
             L  L  L
Sbjct: 137 KLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIA-GLVNLEELNLASNLL 266
           + LE +   + GL  +     ++  L+ + LS+N +    + +A    NL  LNL+ N +
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 267 ETLPDSIGL--LDNLKILDVSGNKLSALPD----SISHCRSLVELD 306
           + L     L  L+NLK LD+   +++ L D           L  LD
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 233 LRLMSLSNNHL--EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290
           ++ + L N+      +         LE L+  +  L ++ + +  L+ LK L++S N++S
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVS 77

Query: 291 ALPDSIS-HCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
              + ++  C +L  L+ S N++  L       +  L+KL
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDL-----STIEPLKKL 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 325 NLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT 382
           ++++L++  ++     L     E   L  L      L  + A + KL  L+ L +S N  
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV 76

Query: 383 DMKELPETFGELTNLKELDLSNNQIHALPN--TFGRLDKLIKLNLEENP 429
               L     +  NL  L+LS N+I  L       +L+ L  L+L    
Sbjct: 77  S-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
             ++++ L + ++ ++  +L     E   L+ L   N  + ++ N   +L+KL KL L +
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSD 73

Query: 428 N 428
           N
Sbjct: 74  N 74

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 9/147 (6%)

Query: 236 MSLSNN-HLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294
           M +    HLE+   + A +  L  L+   +    +        NL+ L +    L ++  
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S 65

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT--SIGEMASLRHL 352
           ++     L +L+ S NR+      +  +L NL  L +  NK++ + T   + ++  L+ L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 353 DAHFNELHGLPA----TIGKLTNLEIL 375
           D    E+  L          L  L  L
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAG-LVNLEELNLASNLL 266
            +LE + L + GL  +     ++  L+ + LS N +    D +A  L NL  LNL+ N L
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 267 ETLPDSIGL--LDNLKILDVSGNKLSALPD----SISHCRSLVELD 306
           + +     L  L+ LK LD+   +++ L D           L  LD
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 318 NIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNEL-HGLPATIGKLTNLEILN 376
            +  E VNL+ L +    +  + +++ ++  L+ L+   N +  GL     KL NL  LN
Sbjct: 43  GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101

Query: 377 VSSNF-TDMKELPETFGELTNLKELDLSNNQIHALPN 412
           +S N   D+  L E   +L  LK LDL N ++  L +
Sbjct: 102 LSGNKLKDISTL-EPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE 393
           +    +     E  +L  L      L  + + + KL  L+ L +S N      L     +
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF-GGLDMLAEK 93

Query: 394 LTNLKELDLSNNQIHALPN--TFGRLDKLIKLNLEENP 429
           L NL  L+LS N++  +       +L+ L  L+L    
Sbjct: 94  LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 350 RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI-H 408
             LD   +    +     +  NLE L++ +    +  +     +L  LK+L+LS N+I  
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINV--GLISV-SNLPKLPKLKKLELSENRIFG 85

Query: 409 ALPNTFGRLDKLIKLNLEEN 428
            L     +L  L  LNL  N
Sbjct: 86  GLDMLAEKLPNLTHLNLSGN 105

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 38/239 (15%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRL--MSLSNNHLEVIPDSIAGLVNLEELNLAS--- 263
                   +  +  +     ++  +    M +S+  L+ +  +     +LE L L     
Sbjct: 93  PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA--RADDLETLKLDKCSG 150

Query: 264 -------NLLETLPDSIGL-LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL 315
                  +++        L ++     +  G  L  L     H  SL  L+      A +
Sbjct: 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ---HNTSLEVLNFYMTEFAKI 207

Query: 316 P----TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA-HFNELHGLPATIGKLT 370
                  I     +L  + V   +I  L       A+L        NE  G+P     L 
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 371 NLEILNVS--SNFTDMKELPETFGELTNLKELDLSNNQI--HALPNTFGRLDKLIKLNL 425
               L     S      E+P  F     +++LDL    +          +   L  L  
Sbjct: 268 FPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 38/226 (16%), Positives = 68/226 (30%), Gaps = 23/226 (10%)

Query: 199 MGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIA----GLRLMSLSNNHLEVIPDSI---- 250
           +  L +A    LE + L      F  +    I      ++ + +  +             
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 251 -AGLVNLEELNLASNLLETLPDSIGL------LDNLKILDVSGNKLSALPDSISHCRSLV 303
                +LE LN        +     L        +L  + V   ++  L        +L 
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246

Query: 304 ELDA-SFNRLAYLPTNIGHELVNLQKLLVPLNKI--RFLPTSIGEMASLRHLDAHFNEL- 359
           E    S N    +P    + +   +   + L+ +    +P      A +R LD  +  L 
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 360 -HGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
                  I K  NLE+L   +   D + L         LK L +  
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGD-RGLEVLAQYCKQLKRLRIER 351

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 34/220 (15%), Positives = 66/220 (30%), Gaps = 27/220 (12%)

Query: 208 KSLEQVDLSS-----RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLV----NLEE 258
           + L+ V           L  L +A      L  + L         D +  +V     ++ 
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARAD--DLETLKLDKCS-GFTTDGLLSIVTHCRKIKT 168

Query: 259 LNLASN--------LLETLPDSIGLLDNLKILDVSGNKLS--ALPDSISHCRSLVELDAS 308
           L +  +         L  L      L+ L        K+S   L     +CRSLV +   
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 309 FNRLAYLPTNIGHELVNLQKL----LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364
              +  L         NL++     L     +     ++     L  L   +   + +P 
Sbjct: 229 DFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
                  +  L++     + ++      +  NL+ L+  N
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 52/267 (19%), Positives = 84/267 (31%), Gaps = 49/267 (18%)

Query: 201 LLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL--EVIPDSIAGLVNLEE 258
            +     + L ++ LS  G   +P  F   A +R + L    L  E     I    NLE 
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 259 LNLASNL----LETLPDSIGLLDNLKILDVSG-NKLSALPDSIS------------HCRS 301
           L   + +    LE L         LK L +        + D                C+ 
Sbjct: 323 LETRNVIGDRGLEVL---AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379

Query: 302 LVELDASFNRLAYLPTN-----IGHELVNLQKL----LVPLNKIRFLPTSIGEMA----- 347
           L  +    + +    TN     IG  L NL       L    +I  LP   G  +     
Sbjct: 380 LEYMAVYVSDI----TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435

Query: 348 -SLRHLDAHFNELH----GLPATIGKLTNLEILNVSS-NFTDMKELPETFGELTNLKELD 401
             LR    +  +      GL        N+  + +     +D + L E      NL++L+
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD-EGLMEFSRGCPNLQKLE 494

Query: 402 LSNNQI--HALPNTFGRLDKLIKLNLE 426
           +        A+     +L  L  L ++
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQ 521

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 41/241 (17%), Positives = 76/241 (31%), Gaps = 63/241 (26%)

Query: 208 KSLEQVDLSS-----RGLRFLPEAFGRI-AGLRLMSLSNNHLEVIPDSIAGLV------- 254
            ++  ++LS      +    L +    I   + ++ L  N       S +          
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS--SKSSSEFKQAFSNLP 137

Query: 255 -NLEELNLASNLLETLPDSIGLL--------DNLKILDVSGNKLS-----ALPDSISHC- 299
            ++  LNL  N L     S   L         N+  L++ GN L+      L   ++   
Sbjct: 138 ASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 300 RSLVELDASFNRLAYLPTNIGHELVN-LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE 358
            S+  LD S N        +G +    L  +   +               +  L+   N 
Sbjct: 196 ASVTSLDLSANL-------LGLKSYAELAYIFSSIPN------------HVVSLNLCLNC 236

Query: 359 LHG-----LPATIGKLTNLEILNVSSNFTD------MKELPETFGELTNLKELDLSNNQI 407
           LHG     L      L +L+ + +  +          K L   F  +  +  +D +  +I
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 408 H 408
           H
Sbjct: 297 H 297

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 395 TNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
            +  EL L+ N + ALP      L  L   +L  NP
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 4e-06
 Identities = 37/287 (12%), Positives = 84/287 (29%), Gaps = 27/287 (9%)

Query: 132 ADKEKALREDSAKEKNACKKILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVR 191
           A+K          +K   + + E+    +   K    + +   +     +   ++     
Sbjct: 49  AEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPS 108

Query: 192 -EEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI 250
            +++     G   E      + +  +          F          +S      +   +
Sbjct: 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL 168

Query: 251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS--ALPD-SISHCRSLVELDA 307
             +  L  L +       L        NLK L++    L    + D   S   +L +L  
Sbjct: 169 DAMPLLNNLKIKGT--NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP---- 363
                 Y       ++   + L            S     +L+ L     E   +     
Sbjct: 227 YVGVEDYGFDG---DMNVFRPLF-----------SKDRFPNLKWLGIVDAEEQNVVVEMF 272

Query: 364 ATIGKLTNLEILNVSSN-FTD--MKELPETFGELTNLKELDLSNNQI 407
                L  LE +++S+   TD   + L +   ++ +LK +++  N +
Sbjct: 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 39/232 (16%), Positives = 87/232 (37%), Gaps = 36/232 (15%)

Query: 188 PPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEA--FGRIAGLRLMSLSNNHLEV 245
             + + ++     L  +  G+ L Q  ++ R  R   +       +  R+  +  ++  +
Sbjct: 46  ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 105

Query: 246 IPDSIAGLV----NLEELNLAS-NLLETLPDSIGLLDNLKILDVSGNKL---SALPDSIS 297
              ++ G++     L+ L+L    L + + +++    NL  L++SG       AL   +S
Sbjct: 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 165

Query: 298 HCRSLVELDASFNRL---AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
            C  L EL+ S+       ++   + H    + +L      +     ++ + + L  L  
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-----NLSGYRKNLQK-SDLSTLVR 219

Query: 355 HFNELHGLPATIGKLTNLEILNVS--SNFTDMKELPETFGELTNLKELDLSN 404
                           NL  L++S      +  +  + F +L  L+ L LS 
Sbjct: 220 R-------------CPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSR 256

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 21/164 (12%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337
           N KILD    ++S +    S       L+            I  +  +  +  + L  +R
Sbjct: 81  NYKILDRENRRISIII--NSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLR 138

Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPATI----GKLTNLEILNVSSN-FTDMKELPETFG 392
             P         +++D   N    + AT+      +  L  LN+S+N    + ++     
Sbjct: 139 SDP-----DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193

Query: 393 ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE-----NPMV 431
           +  NLK L+LS N++     +   LDK+  L LEE     N + 
Sbjct: 194 KAPNLKILNLSGNEL----KSERELDKIKGLKLEELWLDGNSLC 233

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 40/212 (18%), Positives = 66/212 (31%), Gaps = 40/212 (18%)

Query: 230 IAGLRLMSLSNNHLEVIPDSIAGLVN--LEELNLASN---------LLETLPDSIGLLDN 278
           +    L+     H E      +  V   L +LNLA           +   L         
Sbjct: 46  LPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSG---RHA 102

Query: 279 LKILDVSGNKLS-----ALPDSISHCRSLVELDASFNRL-----AYLPTNIGHELVNLQK 328
           L  ++++  +L       L       R   +L    N L       L   + H+   +  
Sbjct: 103 LDEVNLASCQLDPAGLRTLLPVFLRAR---KLGLQLNSLGPEACKDLRDLLLHDQCQITT 159

Query: 329 LLVPLNKI-----RFLPTSIGEMASLRHLDAHFNEL-----HGLPATIGKLTNLEILNVS 378
           L +  N +       L   +    S+ HL      L       L A + +   L+ LNV+
Sbjct: 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 379 SN-FTD--MKELPETFGELTNLKELDLSNNQI 407
            N   D     L     E  +L+ L L  N++
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 152 ILELDDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLE 211
           I + D + +  E + K  EE+  ++ E     +      RE+  ++    L+E   +  E
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD----LEEWNQRQSE 129

Query: 212 QVDLSSRGLRFLPEAF 227
           QV+ +    R   +AF
Sbjct: 130 QVEKNKINNRIADKAF 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	516
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.3
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.8
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.41

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=5.8e-28  Score=244.32  Aligned_cols=264  Identities=20%  Similarity=0.255  Sum_probs=174.4

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence            3567777777777776655 667777777777777776663 46677777777777777776655 66677777777777


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI  366 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l  366 (516)
                      |........+..+++|++|++++|.+..++.  +..+++|+.|++++|.+..++. +..+++|+.|++++|.+++++. +
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~  217 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-V  217 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-h
Confidence            7433333446666777777777777666554  3357777777777777776654 6666667777777776666544 6


Q ss_pred             CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182          367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK  446 (516)
Q Consensus       367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~  446 (516)
                      ..+++|++|++++|.+  ..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++..+            
T Consensus       218 ~~~~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~------------  281 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKI--TDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS------------  281 (347)
T ss_dssp             GGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG------------
T ss_pred             hcCCcCCEEEccCCcc--CCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh------------
Confidence            6667777777777743  34443 666777777777777777663 5667777777777777776542            


Q ss_pred             HHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                               .+...++++.+++++|++++..+..+...+++..|++++|++++..+
T Consensus       282 ---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          282 ---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             ---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence                     11234566777777777776655555566677777777777776655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=8.5e-29  Score=261.56  Aligned_cols=292  Identities=21%  Similarity=0.221  Sum_probs=210.3

Q ss_pred             CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      ...++.|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|. .|..+++|++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            467899999999998774 5788999999999999999877 7788999999999999999998876 578889999999


Q ss_pred             eeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC
Q 010182          284 VSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       284 Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      +++|.+..+ +..+..+++|++|++++|.++.+....+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            999988865 5677888999999999999888877777778899999999998887764 47888888888888888887


Q ss_pred             cc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          362 LP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       362 l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      ++ ..+..+++|+.|++++|... ..++..+....+|++|++++|+++.+| ..+..+++|+.|+|++|.++..+...+.
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTC-CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             eChhhcccCcccceeeCCCCccc-cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            54 36777778888888776432 444444444456777777777777666 4566667777777777766655443322


Q ss_pred             chhHHHHHHHhhhhh-----hHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccc
Q 010182          440 EGVGAVKTFMAKRWL-----DILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSG  499 (516)
Q Consensus       440 ~~~~~~~~~~~~~~l-----~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~  499 (516)
                      .........+..+.+     ..+...++++.++|++|++++.....+...+++..|++++|.+++
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            111000000011110     112234567777777777776655555556677777777777765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.5e-28  Score=257.75  Aligned_cols=275  Identities=22%  Similarity=0.212  Sum_probs=173.8

Q ss_pred             CCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCC-Cc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEE
Q 010182          208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLE-VI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILD  283 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~-~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~  283 (516)
                      +++++|++++|.++.+ +..|.++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            5678888888888766 556778888888888888775 44 45677788888888888877755 55677777888888


Q ss_pred             eeCCCCCC-CCc--ccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCcccc-chhc--------------
Q 010182          284 VSGNKLSA-LPD--SISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLP-TSIG--------------  344 (516)
Q Consensus       284 Ls~n~l~~-l~~--~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~-~~l~--------------  344 (516)
                      +++|.++. ++.  .+..+++|++|++++|.++.+. ...+..+++|++|++++|.+..++ ..+.              
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            88877764 222  2667777777777777777663 333556777777777777765432 1221              


Q ss_pred             --------------------CCCCCcEEEccCCCCC--------------------------------------------
Q 010182          345 --------------------EMASLRHLDAHFNELH--------------------------------------------  360 (516)
Q Consensus       345 --------------------~l~~L~~L~Ls~n~l~--------------------------------------------  360 (516)
                                          .+++|++|++++|.++                                            
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                2234555555555443                                            


Q ss_pred             -------------------C-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCc
Q 010182          361 -------------------G-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDK  419 (516)
Q Consensus       361 -------------------~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~  419 (516)
                                         + .+..+..+++|+.|++++|.+. ...+..+..+++|++|+|++|+++.+ |..+..+++
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence                               3 2334455555555555555332 11233455555555666655555554 345555556


Q ss_pred             ccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccc
Q 010182          420 LIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSG  499 (516)
Q Consensus       420 L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~  499 (516)
                      |++|+|++|.++..++..                   +...++++.++|++|++++.....+...++++.|++++|.+++
T Consensus       349 L~~L~Ls~N~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQS-------------------FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSCCCEECTTT-------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEECCCCcccccChhh-------------------ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            666666666555443222                   2235677888888888887655555566778888888888887


Q ss_pred             ccC
Q 010182          500 ILG  502 (516)
Q Consensus       500 ~~~  502 (516)
                      ..+
T Consensus       410 ~~~  412 (455)
T 3v47_A          410 SCP  412 (455)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=9.8e-30  Score=278.31  Aligned_cols=229  Identities=22%  Similarity=0.294  Sum_probs=190.7

Q ss_pred             CCCccEEEeecCCCCc------------------chHhhc--CCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCC
Q 010182          207 GKSLEQVDLSSRGLRF------------------LPEAFG--RIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL  265 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~  265 (516)
                      .++|++|+|++|.++.                  +|..++  ++++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            4789999999999998                  999888  9999999999999876 679999999999999999998


Q ss_pred             -CCC--cchhhcCC------CCCcEEEeeCCCCCCCCc--ccccCCCCcEEeCCCCCCC-cCChhhhhcCCCCcEEecCC
Q 010182          266 -LET--LPDSIGLL------DNLKILDVSGNKLSALPD--SISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPL  333 (516)
Q Consensus       266 -l~~--l~~~l~~l------~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~  333 (516)
                       ++.  +|..++.+      ++|++|++++|.++.+|.  .+..+++|++|++++|.++ .+|  .+..+++|+.|++++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence             884  88877776      999999999999999998  8999999999999999998 787  455688999999999


Q ss_pred             CCCccccchhcCCCC-CcEEEccCCCCCCcchhhCCCC--CCcEEEcccCCCCCCCcchhhc-------CCCCccEEecc
Q 010182          334 NKIRFLPTSIGEMAS-LRHLDAHFNELHGLPATIGKLT--NLEILNVSSNFTDMKELPETFG-------ELTNLKELDLS  403 (516)
Q Consensus       334 n~l~~l~~~l~~l~~-L~~L~Ls~n~l~~l~~~l~~l~--~L~~L~L~~n~~~~~~l~~~l~-------~l~~L~~L~L~  403 (516)
                      |.+..+|..+..+++ |++|++++|.++.+|..+...+  +|+.|++++|.+. ..+|..+.       .+++|+.|+|+
T Consensus       363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L~Ls  441 (636)
T 4eco_A          363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINVSSINLS  441 (636)
T ss_dssp             SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred             CccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCCCEEECc
Confidence            999988888888888 9999999999988888776654  7888888888655 33455555       56678888888


Q ss_pred             CCCCCCchh-hhcCCCcccEEecccCCCCCCCHHHH
Q 010182          404 NNQIHALPN-TFGRLDKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       404 ~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      +|+++.+|. .+..+++|+.|+|++|.++.++...+
T Consensus       442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence            888887773 44557777777777777776655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1e-28  Score=276.13  Aligned_cols=276  Identities=25%  Similarity=0.322  Sum_probs=212.8

Q ss_pred             CccEEEeecCCCC-cchHhhcC--CCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEE
Q 010182          209 SLEQVDLSSRGLR-FLPEAFGR--IAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILD  283 (516)
Q Consensus       209 ~L~~L~L~~~~l~-~l~~~~~~--l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~  283 (516)
                      +|++|++++|.++ .++..+..  +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            5666666666554 33343433  566777777777776 55777888888888888888777 5677778888888888


Q ss_pred             eeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC
Q 010182          284 VSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      +++|.+. .+|..+..+++|++|++++|.++......+..+++|+.|++++|++. .+|..++.+++|++|++++|.+++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  528 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG  528 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence            8888877 56777888888888888888887544444556888888888888887 667778888888888888888875


Q ss_pred             -cchhhCCCCCCcEEEcccCCCCCCCcc----------------------------------------------------
Q 010182          362 -LPATIGKLTNLEILNVSSNFTDMKELP----------------------------------------------------  388 (516)
Q Consensus       362 -l~~~l~~l~~L~~L~L~~n~~~~~~l~----------------------------------------------------  388 (516)
                       +|..+..+++|+.|++++|.+. ..+|                                                    
T Consensus       529 ~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  607 (768)
T 3rgz_A          529 NIPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL  607 (768)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred             cCCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence             7778888888888888887443 1222                                                    


Q ss_pred             ------------------hhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHH
Q 010182          389 ------------------ETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFM  449 (516)
Q Consensus       389 ------------------~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~  449 (516)
                                        ..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++..+..+           
T Consensus       608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-----------  676 (768)
T 3rgz_A          608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-----------  676 (768)
T ss_dssp             GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----------
T ss_pred             ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-----------
Confidence                              23445678999999999998 678999999999999999999986544332           


Q ss_pred             hhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCCC
Q 010182          450 AKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGG  504 (516)
Q Consensus       450 ~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~~  504 (516)
                              .....++.|+|++|+++|..+..+...+.++.|++++|+++|.+|..
T Consensus       677 --------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          677 --------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             --------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             --------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence                    24577899999999999999999999999999999999999998864

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.2e-28  Score=245.88  Aligned_cols=264  Identities=23%  Similarity=0.278  Sum_probs=184.7

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~  286 (516)
                      +++.++++++.++.+|..+.  ++|++|++++|.++.++. .|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            56777777777777776443  577778888887777644 677777888888888877766 55777777888888888


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccCCCCCCcc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      |.++.+|..+.  ++|++|++++|.++.++...+..+++|+.|++++|.+.   ..+..+..+++|++|++++|.++.+|
T Consensus       110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            87777766554  67778888888777777776667777888888777775   33456677777788888777777776


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV  442 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  442 (516)
                      ..+.  ++|++|++++|.+. ...+..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++..+     
T Consensus       188 ~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l-----  259 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-----  259 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT-----
T ss_pred             cccc--ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh-----
Confidence            6543  67777777777543 122456777777777777777777665 46777777777777777777554321     


Q ss_pred             HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc------cccccEEEccCCcccc
Q 010182          443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL------TRSTSWLKTVGENVSG  499 (516)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~------~~~l~~l~l~~N~ls~  499 (516)
                                     ...++++.+++++|++++.....+..      ...+..+++++|.+..
T Consensus       260 ---------------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          260 ---------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             ---------------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ---------------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence                           13456677777777777665544432      2456677777777653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.8e-27  Score=239.22  Aligned_cols=261  Identities=20%  Similarity=0.265  Sum_probs=227.2

Q ss_pred             hCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          206 AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      ..++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.....+..+..+++|++|+++
T Consensus        86 ~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~  163 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT  163 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred             cCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence            3478999999999999886 58999999999999999998866 899999999999999655444558899999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT  365 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~  365 (516)
                      +|.+..++. +..+++|++|++++|.++.++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.+++++. 
T Consensus       164 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          164 ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             SSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-
Confidence            999998855 8899999999999999998876  4569999999999999998765 8889999999999999999876 


Q ss_pred             hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182          366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV  445 (516)
Q Consensus       366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  445 (516)
                      +..+++|++|++++|.+.  .+ ..+..+++|++|++++|+++.++ .+..+++|+.|++++|.++..++..+.      
T Consensus       239 ~~~l~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~------  308 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQIS--DI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG------  308 (347)
T ss_dssp             GTTCTTCCEEECCSSCCC--CC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH------
T ss_pred             hhcCCCCCEEECCCCccC--CC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh------
Confidence            889999999999999554  44 46889999999999999999985 688999999999999999876554332      


Q ss_pred             HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccc
Q 010182          446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVS  498 (516)
Q Consensus       446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls  498 (516)
                                   ..++++.+++++|++++..+  ....+.+..+++++|.|+
T Consensus       309 -------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 -------------GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -------------TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             -------------ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                         45788999999999998755  667889999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.2e-28  Score=246.20  Aligned_cols=262  Identities=24%  Similarity=0.299  Sum_probs=179.7

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~  286 (516)
                      +++.++++++.++.+|..+.  ++|++|++++|.++.+ +..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            57777777777777776543  6777788877777766 34677777788888877777765 55677777788888877


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc---ccchhcCCCCCcEEEccCCCCCCcc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF---LPTSIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      |.++.+|..+.  ++|++|++++|.++.++...+..+++|+.|++++|.++.   .+..+..+ +|++|++++|.++.+|
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            77777766554  677777887777777777666667777777777777752   34445555 7777777777777776


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV  442 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  442 (516)
                      ..+.  ++|++|++++|.+. ...+..+..+++|+.|++++|+|+.++ ..+..+++|+.|++++|.++.++..      
T Consensus       189 ~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~------  259 (332)
T 2ft3_A          189 KDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG------  259 (332)
T ss_dssp             SSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT------
T ss_pred             cccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh------
Confidence            6543  57777777777543 222356677777777777777777665 4677777777777777777755432      


Q ss_pred             HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc------cccccEEEccCCccc
Q 010182          443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL------TRSTSWLKTVGENVS  498 (516)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~------~~~l~~l~l~~N~ls  498 (516)
                                    +...++++.+++++|++++.....+..      ...+..+++++|.++
T Consensus       260 --------------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          260 --------------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             --------------GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             --------------hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence                          123456677777777777665444332      244667777777766

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=2.3e-27  Score=244.05  Aligned_cols=263  Identities=21%  Similarity=0.198  Sum_probs=176.0

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.++.++. .|..+++|++|++++|.++.+ +..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            556666666666665543 566666666666666666655 33456666666666666666666553 356666666666


Q ss_pred             eCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCC-------------------CCccccchhc
Q 010182          285 SGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-------------------KIRFLPTSIG  344 (516)
Q Consensus       285 s~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-------------------~l~~l~~~l~  344 (516)
                      ++|.++.++ ..+..+++|++|++++|.++.++..   .+++|+.|++++|                   .+..++..  
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--  223 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--  223 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG---GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCccccc---cccccceeecccccccccCCCCcceEEECCCCeeeecccc--
Confidence            666666553 3455666666666666666554322   2333333333333                   33322221  


Q ss_pred             CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEe
Q 010182          345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN  424 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~  424 (516)
                      ..++|++|++++|.+++. ..+..+++|+.|++++|.+. ...|..+..+++|++|+|++|+++.+|..+..+++|++|+
T Consensus       224 ~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          224 VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred             ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence            134677777777777776 45778888999999988654 3346778888899999999999988887777888999999


Q ss_pred             cccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          425 LEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       425 L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      +++|++...+..+                    ..+++++.+++++|+++...   ....+.+..|++++|.+++.
T Consensus       302 L~~n~l~~~~~~~--------------------~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          302 LSHNHLLHVERNQ--------------------PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCSSCCCCCGGGH--------------------HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCcceecCccc--------------------cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence            9999888664421                    24678899999999998764   34467899999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.4e-27  Score=240.05  Aligned_cols=272  Identities=19%  Similarity=0.225  Sum_probs=227.5

Q ss_pred             hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182          206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD  283 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~  283 (516)
                      ..+.++.|++++|.++.++. .|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+.  ++|++|+
T Consensus        50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR  127 (330)
T ss_dssp             CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred             CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence            34789999999999998876 699999999999999999987 7899999999999999999999987654  7999999


Q ss_pred             eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCC
Q 010182          284 VSGNKLSALPD-SISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH  360 (516)
Q Consensus       284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~  360 (516)
                      +++|.++.++. .+..+++|++|++++|.++.  .....+..+++|+.|++++|.+..+|..+.  ++|++|++++|.++
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence            99999998754 57889999999999999864  455556679999999999999999887664  79999999999999


Q ss_pred             Cc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHH
Q 010182          361 GL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       361 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      ++ +..+..+++|+.|++++|.+.  .+ +..+..+++|++|+|++|+++.+|..+..+++|++|++++|+|+..+...+
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCc--eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            86 678999999999999999654  34 347889999999999999999999999999999999999999999887665


Q ss_pred             hchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCC--CCCccccccccEEEccCCc
Q 010182          439 KEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQ--MPTGWLTRSTSWLKTVGEN  496 (516)
Q Consensus       439 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~--~~~~~~~~~l~~l~l~~N~  496 (516)
                      +....             ......++.+++++|.+....  +..+.....++.+++++|+
T Consensus       284 ~~~~~-------------~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          284 CPPGY-------------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCSSC-------------CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CCccc-------------ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            43210             012355678999999987633  3344456788999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=4.7e-28  Score=255.85  Aligned_cols=275  Identities=25%  Similarity=0.294  Sum_probs=207.1

Q ss_pred             CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~  283 (516)
                      .++|++|+|++|.++.+ |..|..+++|++|+|++|.++.++. .|.++++|++|++++|.++.+ +..|..+++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            37899999999999876 6678999999999999999998865 578899999999999999866 45788889999999


Q ss_pred             eeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCC--------------
Q 010182          284 VSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMA--------------  347 (516)
Q Consensus       284 Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~--------------  347 (516)
                      +++|.+..+ +..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..++. .+..++              
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~  214 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD  214 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence            999988866 4578888899999999999888888777778888888888887775433 344444              


Q ss_pred             ----------CCcEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhc
Q 010182          348 ----------SLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFG  415 (516)
Q Consensus       348 ----------~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~  415 (516)
                                +|++|++++|.++.++ ..+..+++|+.|+|++|.+. ...+..+..+++|++|+|++|+++.+ |..+.
T Consensus       215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhc
Confidence                      4555666666666665 36777888888888888544 22234567788888888888888876 47788


Q ss_pred             CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCC
Q 010182          416 RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE  495 (516)
Q Consensus       416 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N  495 (516)
                      .+++|+.|+|++|.++..+...+.                   ...+++.++|++|.+.+.+... |.......+++.++
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~~-------------------~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~  353 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVFH-------------------SVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQ  353 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGBS-------------------CGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTC
T ss_pred             CcccCCEEECCCCcCceeCHhHcC-------------------CCcccCEEEccCCCccCccchH-hHHhhhhccccCcc
Confidence            888888888888888877664432                   3467899999999999875433 33333334555566


Q ss_pred             ccccccC
Q 010182          496 NVSGILG  502 (516)
Q Consensus       496 ~ls~~~~  502 (516)
                      ......|
T Consensus       354 ~~~C~~p  360 (477)
T 2id5_A          354 QPTCATP  360 (477)
T ss_dssp             CCBEEES
T ss_pred             CceeCCc
Confidence            5554443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.1e-27  Score=236.71  Aligned_cols=234  Identities=25%  Similarity=0.326  Sum_probs=209.2

Q ss_pred             HHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCC
Q 010182          200 GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNL  279 (516)
Q Consensus       200 ~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L  279 (516)
                      ..+......+++.|++++|.++.+|..+.++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.+++|
T Consensus        73 ~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL  152 (328)
T ss_dssp             HHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred             HHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence            34445566899999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEeeCCC-CCCCCccccc---------CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCC
Q 010182          280 KILDVSGNK-LSALPDSISH---------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL  349 (516)
Q Consensus       280 ~~L~Ls~n~-l~~l~~~l~~---------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L  349 (516)
                      ++|++++|. +..+|..+..         +++|++|++++|.++.+|..+. .+++|++|++++|.+..+|..+..+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCC
Confidence            999999975 4577776654         9999999999999999987754 6999999999999999999999999999


Q ss_pred             cEEEccCCCCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEeccc
Q 010182          350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       350 ~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~  427 (516)
                      ++|++++|.+.+ +|..+..+++|+.|++++|.+. ..+|..+..+++|+.|+|++|++. .+|..+..+++|+.+++..
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            999999988776 7888999999999999998654 678889999999999999998765 7899999999999999999


Q ss_pred             CCCCCCCH
Q 010182          428 NPMVIPPV  435 (516)
Q Consensus       428 N~l~~~~~  435 (516)
                      |.+.....
T Consensus       311 ~~~~~l~~  318 (328)
T 4fcg_A          311 HLQAQLDQ  318 (328)
T ss_dssp             GGSCC---
T ss_pred             HHHHHHhh
Confidence            88775543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.8e-27  Score=266.38  Aligned_cols=267  Identities=18%  Similarity=0.283  Sum_probs=176.3

Q ss_pred             CCCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCC-CCC--cchhhcCC-------CCccEEEeeCCCCCCcch--hh
Q 010182          207 GKSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNH-LEV--IPDSIAGL-------VNLEELNLASNLLETLPD--SI  273 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~-l~~--l~~~l~~l-------~~L~~L~Ls~n~l~~l~~--~l  273 (516)
                      .++|++|+|++|.+. .+|..|.++++|+.|++++|. ++.  +|..++.+       ++|++|++++|.++.+|.  .+
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            478999999998855 778888899999999999997 774  67665544       488888888888888887  88


Q ss_pred             cCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCC-CcEEecCCCCCccccchhcCCCC--Cc
Q 010182          274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVN-LQKLLVPLNKIRFLPTSIGEMAS--LR  350 (516)
Q Consensus       274 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~l~~~l~~l~~--L~  350 (516)
                      +.+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+. .+++ |+.|++++|.+..+|..+..+..  |+
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~-~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG  647 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC-EECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred             hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh-hccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence            88888888888888888887 78888888888888888887776644 4777 88888888887777655544332  44


Q ss_pred             EEEccCCC-----------------------------CCCcchhh-CCCCCCcEEEcccCCCCCCCcchhhcCC------
Q 010182          351 HLDAHFNE-----------------------------LHGLPATI-GKLTNLEILNVSSNFTDMKELPETFGEL------  394 (516)
Q Consensus       351 ~L~Ls~n~-----------------------------l~~l~~~l-~~l~~L~~L~L~~n~~~~~~l~~~l~~l------  394 (516)
                      .|++++|.                             ++.+|..+ ..+++|+.|+|++|.+.  .+|..+...      
T Consensus       648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~  725 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYK  725 (876)
T ss_dssp             EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCT
T ss_pred             EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC--ccChHHhcccccccc
Confidence            45554444                             44444433 24555666666665332  444433221      


Q ss_pred             --CCccEEeccCCCCCCchhhhc--CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhccccccc
Q 010182          395 --TNLKELDLSNNQIHALPNTFG--RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEG  470 (516)
Q Consensus       395 --~~L~~L~L~~n~i~~lp~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~  470 (516)
                        ++|+.|+|++|+|+.+|..+.  .+++|+.|+|++|.++.++..+                    ...++++.|+|++
T Consensus       726 nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l--------------------~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP--------------------LNSSQLKAFGIRH  785 (876)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG--------------------GGCTTCCEEECCC
T ss_pred             ccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhh--------------------hcCCCCCEEECCC
Confidence              256666666666666665554  6666666666666666543322                    1234455555543


Q ss_pred             ------ccCCCCCCCCccccccccEEEccCCcc
Q 010182          471 ------NNNEGEQMPTGWLTRSTSWLKTVGENV  497 (516)
Q Consensus       471 ------N~i~~~~~~~~~~~~~l~~l~l~~N~l  497 (516)
                            |++.+..+..+...++|..|++++|++
T Consensus       786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence                  445555444555555555555555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=5.4e-27  Score=254.80  Aligned_cols=263  Identities=21%  Similarity=0.200  Sum_probs=188.0

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.++.++. .|+.+++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+|.. |+.+++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            567777777777776544 5777777777777777777663 3457777777777777777776654 467777777777


Q ss_pred             eCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCC-------------------ccccchhc
Q 010182          285 SGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI-------------------RFLPTSIG  344 (516)
Q Consensus       285 s~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-------------------~~l~~~l~  344 (516)
                      ++|.++.++ ..+..+++|++|++++|.++.++..   .+++|+.|++++|.+                   ..++..+ 
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~-  230 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-  230 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCccccccccc-
Confidence            777777553 3566777777777777777665432   234444444444433                   3332221 


Q ss_pred             CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEe
Q 010182          345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN  424 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~  424 (516)
                       ..+|+.|++++|.+++. ..+..+++|+.|+|++|.+. ...|..++.+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus       231 -~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          231 -NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  307 (597)
T ss_dssp             -CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred             -CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence             24677788888877775 56778889999999998654 3346788889999999999999998887778889999999


Q ss_pred             cccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          425 LEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       425 L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      |++|.+..++..+                    ..+++++.|+|++|++++..   ....+++..|++++|.+++.
T Consensus       308 Ls~N~l~~i~~~~--------------------~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          308 LSHNHLLHVERNQ--------------------PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCSSCCCCCGGGH--------------------HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCCccCccc--------------------ccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            9999988654422                    25678999999999998764   34457899999999999864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=2e-27  Score=239.26  Aligned_cols=272  Identities=19%  Similarity=0.201  Sum_probs=226.8

Q ss_pred             hCCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182          206 AGKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD  283 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~  283 (516)
                      ..++++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+.  ++|++|+
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence            3468999999999999885 4799999999999999999977 7789999999999999999999987654  8999999


Q ss_pred             eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCC
Q 010182          284 VSGNKLSALPD-SISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH  360 (516)
Q Consensus       284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~  360 (516)
                      +++|.++.++. .+..+++|++|++++|.++.  .....+..+ +|+.|++++|.++.+|..+.  ++|++|++++|.++
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence            99999998865 48889999999999999964  445555555 99999999999999887665  78999999999999


Q ss_pred             Ccc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          361 GLP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       361 ~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      +++ ..+..+++|+.|++++|.+. ...+..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++..+...+.
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            975 68899999999999999665 2234578899999999999999999999999999999999999999988876654


Q ss_pred             chhHHHHHHHhhhhhhHhHHHhhhcccccccccCC--CCCCCCccccccccEEEccCCc
Q 010182          440 EGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNE--GEQMPTGWLTRSTSWLKTVGEN  496 (516)
Q Consensus       440 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~--~~~~~~~~~~~~l~~l~l~~N~  496 (516)
                      ....             ......++.+++++|.+.  +..+.++...+.++.+++++|+
T Consensus       286 ~~~~-------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          286 PVGF-------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSC-------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccc-------------ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            3110             011355788999999988  3444455567889999999885

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.8e-28  Score=274.11  Aligned_cols=224  Identities=30%  Similarity=0.447  Sum_probs=172.4

Q ss_pred             CCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-Ccchh-hcCCCCccEEEeeCCCCC-CcchhhcC--------
Q 010182          208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDS-IAGLVNLEELNLASNLLE-TLPDSIGL--------  275 (516)
Q Consensus       208 ~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~-l~~l~~L~~L~Ls~n~l~-~l~~~l~~--------  275 (516)
                      ++|++|++++|.++ .+|..|+.+++|++|++++|.+. .+|.. +..+++|++|++++|.++ .+|..+..        
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L  373 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL  373 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence            56777777777776 55666777777777777777776 56544 677777777777777665 45544433        


Q ss_pred             -------------------CCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182          276 -------------------LDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK  335 (516)
Q Consensus       276 -------------------l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  335 (516)
                                         +++|++|++++|.++ .+|..+..+++|++|++++|.++......+..+++|+.|++++|.
T Consensus       374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~  453 (768)
T 3rgz_A          374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM  453 (768)
T ss_dssp             ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence                               345666666666555 556778888888888888888875544455568889999999888


Q ss_pred             Cc-cccchhcCCCCCcEEEccCCCCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-Cchh
Q 010182          336 IR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPN  412 (516)
Q Consensus       336 l~-~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~  412 (516)
                      +. .+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+. ..+|.+++.+++|+.|+|++|+++ .+|.
T Consensus       454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            87 677788888899999999998885 7888888999999999999765 467888899999999999999988 6788


Q ss_pred             hhcCCCcccEEecccCCCCC
Q 010182          413 TFGRLDKLIKLNLEENPMVI  432 (516)
Q Consensus       413 ~l~~l~~L~~L~L~~N~l~~  432 (516)
                      .+..+++|+.|++++|++.+
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEES
T ss_pred             HHcCCCCCCEEECCCCccCC
Confidence            89999999999999998873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=4.7e-28  Score=264.97  Aligned_cols=286  Identities=17%  Similarity=0.274  Sum_probs=154.8

Q ss_pred             CCccEEEeecCC-CCc--chHhhcCC------CCCcEEEeecCCCCCcch--hhcCCCCccEEEeeCCCCC-CcchhhcC
Q 010182          208 KSLEQVDLSSRG-LRF--LPEAFGRI------AGLRLMSLSNNHLEVIPD--SIAGLVNLEELNLASNLLE-TLPDSIGL  275 (516)
Q Consensus       208 ~~L~~L~L~~~~-l~~--l~~~~~~l------~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~-~l~~~l~~  275 (516)
                      ++|++|++++|. ++.  +|..++.+      ++|++|++++|.++.+|.  .++.+++|++|++++|.++ .+| .++.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            566677777766 663  66655554      667777777776666666  6666667777777777666 666 5666


Q ss_pred             CCCCcEEEeeCCCCCCCCcccccCCC-CcEEeCCCCCCCcCChhhhh-cCCCCcEEecCCCCCcc-ccchhc-------C
Q 010182          276 LDNLKILDVSGNKLSALPDSISHCRS-LVELDASFNRLAYLPTNIGH-ELVNLQKLLVPLNKIRF-LPTSIG-------E  345 (516)
Q Consensus       276 l~~L~~L~Ls~n~l~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~-l~~~l~-------~  345 (516)
                      +++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+.. .+++|+.|++++|.+.. .|..+.       .
T Consensus       352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred             CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence            66666666666666666666666666 66666666666655543321 12256666666665542 233333       4


Q ss_pred             CCCCcEEEccCCCCCCcchh-hCCCCCCcEEEcccCCCCCCCcchhhcC--------CCCccEEeccCCCCCCchhhhc-
Q 010182          346 MASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGE--------LTNLKELDLSNNQIHALPNTFG-  415 (516)
Q Consensus       346 l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~~~~~~l~~~l~~--------l~~L~~L~L~~n~i~~lp~~l~-  415 (516)
                      +.+|++|++++|.++.+|.. +..+++|+.|+|++|.+.  .+|.....        +++|+.|+|++|+|+.+|..+. 
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            44555566666655555443 233555555555555332  33332211        1155555555555555554444 


Q ss_pred             -CCCcccEEecccCCCCCCCHHHHhchhHHHHHH-H-----------hhhhhhHhHHHhhhcccccccccCCCCCCCCcc
Q 010182          416 -RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTF-M-----------AKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW  482 (516)
Q Consensus       416 -~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~-----------~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~  482 (516)
                       .+++|+.|+|++|.++.++..+..  ...++.+ +           .......+...++++.++|++|+++ ..+..+.
T Consensus       510 ~~l~~L~~L~Ls~N~l~~ip~~~~~--l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~  586 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT  586 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCGGGG--CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC
T ss_pred             ccCCCcCEEECCCCCCCCcChhhhc--CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh
Confidence             555555555555555544322211  0000000 0           0001112234456677777777773 3232222


Q ss_pred             ccccccEEEccCCcccccc
Q 010182          483 LTRSTSWLKTVGENVSGIL  501 (516)
Q Consensus       483 ~~~~l~~l~l~~N~ls~~~  501 (516)
                        ++++.|++++|.++.+.
T Consensus       587 --~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          587 --PNISVLDIKDNPNISID  603 (636)
T ss_dssp             --TTCCEEECCSCTTCEEE
T ss_pred             --CcCCEEECcCCCCcccc
Confidence              56777777777666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.8e-27  Score=264.82  Aligned_cols=270  Identities=17%  Similarity=0.202  Sum_probs=208.5

Q ss_pred             CCccEEEeecCCCCcchH--hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCC-CcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLPE--AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDN-LKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~-L~~L~L  284 (516)
                      ++|+.|++++|.++.+|.  .+..+++|+.|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++ |++|++
T Consensus       548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence            467777777777777777  7777777777888777777777 777777788888887777777777777777 888888


Q ss_pred             eCCCCCCCCcccccCCC--CcEEeCCCCCCCcCChhhh-----hcCCCCcEEecCCCCCccccchhc-CCCCCcEEEccC
Q 010182          285 SGNKLSALPDSISHCRS--LVELDASFNRLAYLPTNIG-----HELVNLQKLLVPLNKIRFLPTSIG-EMASLRHLDAHF  356 (516)
Q Consensus       285 s~n~l~~l~~~l~~l~~--L~~L~L~~n~l~~l~~~~~-----~~l~~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~Ls~  356 (516)
                      ++|.++.+|..+..+..  |+.|++++|.++.....+.     ..+++|+.|++++|.+..+|..+. .+++|+.|++++
T Consensus       627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred             cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence            88877777766665543  7788888887754322211     124589999999999998888764 789999999999


Q ss_pred             CCCCCcchhhCCC--------CCCcEEEcccCCCCCCCcchhhc--CCCCccEEeccCCCCCCchhhhcCCCcccEEecc
Q 010182          357 NELHGLPATIGKL--------TNLEILNVSSNFTDMKELPETFG--ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE  426 (516)
Q Consensus       357 n~l~~l~~~l~~l--------~~L~~L~L~~n~~~~~~l~~~l~--~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~  426 (516)
                      |.++.+|..+...        ++|+.|+|++|.+.  .+|..+.  .+++|+.|+|++|+|+.+|..+..+++|+.|+|+
T Consensus       707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC
T ss_pred             CcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECC
Confidence            9999988755443        38999999999654  7888887  9999999999999999999899999999999998


Q ss_pred             c------CCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          427 E------NPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       427 ~------N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      +      |.+....+.                   .+...++|+.|+|++|++ +..+..+.  ++|+.|++++|++..+
T Consensus       785 ~N~~ls~N~l~~~ip~-------------------~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPT-------------------GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CCBCTTCCBCCCCCCT-------------------TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             CCCCcccccccccChH-------------------HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            7      444433221                   223467889999999999 44444433  6899999999998776


Q ss_pred             cC
Q 010182          501 LG  502 (516)
Q Consensus       501 ~~  502 (516)
                      ..
T Consensus       843 ~~  844 (876)
T 4ecn_A          843 DV  844 (876)
T ss_dssp             EC
T ss_pred             Ch
Confidence            53

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.6e-26  Score=241.93  Aligned_cols=281  Identities=23%  Similarity=0.306  Sum_probs=172.2

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  143 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS  143 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred             hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence            4678888888888887766 7788888888888888887765 7788888888888888887765 67777788887777


Q ss_pred             CCCCCCCc--------------------ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCC
Q 010182          287 NKLSALPD--------------------SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEM  346 (516)
Q Consensus       287 n~l~~l~~--------------------~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l  346 (516)
                      |.+..++.                    .+..+++|++|++++|.++.++.  +..+++|+.|++++|.+..++. ++.+
T Consensus       144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l  220 (466)
T 1o6v_A          144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGIL  220 (466)
T ss_dssp             EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GGGC
T ss_pred             CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc-cccc
Confidence            76665431                    24455666667777776665543  3346666666666666665533 4555


Q ss_pred             CCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecc
Q 010182          347 ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE  426 (516)
Q Consensus       347 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~  426 (516)
                      ++|++|++++|.+++++ .+..+++|+.|++++|.+  ..++. +..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus       221 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~  295 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI--SNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN  295 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcc--ccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence            66666666666665553 345556666666666633  22222 5555556666666665555543 5555555555555


Q ss_pred             cCCCCCCCHHHHhchhHHHH-HHHhhhhhh---HhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          427 ENPMVIPPVEVVKEGVGAVK-TFMAKRWLD---ILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       427 ~N~l~~~~~~~~~~~~~~~~-~~~~~~~l~---~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                      +|.+...+.  +.. +..++ ..+..+.+.   .+...++++.+++++|++++.  +.+...++++.|++++|++++..+
T Consensus       296 ~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          296 ENQLEDISP--ISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             SSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCcccCchh--hcC-CCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            555554432  000 00000 000000000   022446677777887777765  455566778888888888887765


Q ss_pred             C
Q 010182          503 G  503 (516)
Q Consensus       503 ~  503 (516)
                      -
T Consensus       371 ~  371 (466)
T 1o6v_A          371 L  371 (466)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=2e-27  Score=258.44  Aligned_cols=273  Identities=19%  Similarity=0.227  Sum_probs=156.7

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC-Ccch-hhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE-TLPD-SIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~-~l~~-~l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+. .++. .+..+++|++|++
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            445555555555555555555555555555555555544 334555555555555555544 3332 3455555666666


Q ss_pred             eCCCCCCC---CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-c-chhcCCCCCcEEEccCCCC
Q 010182          285 SGNKLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-P-TSIGEMASLRHLDAHFNEL  359 (516)
Q Consensus       285 s~n~l~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~-~~l~~l~~L~~L~Ls~n~l  359 (516)
                      ++|.++.+   +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+... + ..+..+++|++|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            65555533   34455566666666666665555444444566666666666665533 1 2355666666666666666


Q ss_pred             CCc-chhhCCCCCCcEEEcccCCCCCCCc--chhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCH
Q 010182          360 HGL-PATIGKLTNLEILNVSSNFTDMKEL--PETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       360 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      +.. +..+..+++|++|++++|.+....+  +..+..+++|+.|++++|+++.+ |..+..+++|+.|+|++|.++..++
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  517 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI  517 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence            553 4455666666666666665432111  23456666666666666666655 3566666666666666666664433


Q ss_pred             HHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          436 EVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      ..+                   .....+ .+++++|++++..+..+...+.++.+++++|.+++.
T Consensus       518 ~~l-------------------~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          518 EAL-------------------SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             GGG-------------------TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             hHh-------------------Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            222                   133445 677777777766555555667777788888777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=3.1e-27  Score=256.84  Aligned_cols=296  Identities=18%  Similarity=0.165  Sum_probs=191.2

Q ss_pred             hCCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEE
Q 010182          206 AGKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKIL  282 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L  282 (516)
                      ....+++|++++|.++.+ +..|.++++|++|++++|.+..+ |..|.++++|++|++++|.++.+ |..|+.+++|++|
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            345788888888888877 45788888888888888888866 66788888888888888888865 5578888888888


Q ss_pred             EeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCc--EEEccCCC
Q 010182          283 DVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLR--HLDAHFNE  358 (516)
Q Consensus       283 ~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~--~L~Ls~n~  358 (516)
                      ++++|.++.+ +..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..+ +..++.+++|+  +|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            8888888876 56677888888888888888776433333478888888888888765 44567777777  67777777


Q ss_pred             CCCcchhhCCCC----------------------------------------------------CCcEEEcccCCCCCCC
Q 010182          359 LHGLPATIGKLT----------------------------------------------------NLEILNVSSNFTDMKE  386 (516)
Q Consensus       359 l~~l~~~l~~l~----------------------------------------------------~L~~L~L~~n~~~~~~  386 (516)
                      +++++.......                                                    +|+.|++++|.+.  .
T Consensus       191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~--~  268 (606)
T 3t6q_A          191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF--N  268 (606)
T ss_dssp             CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS--S
T ss_pred             cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC--c
Confidence            665332111111                                                    3444445544322  2


Q ss_pred             c-chhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhh------hhHhHH
Q 010182          387 L-PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRW------LDILLE  459 (516)
Q Consensus       387 l-~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~  459 (516)
                      + +..++.+++|++|++++|+++.+|..+..+++|++|++++|.+...++..+..........+..+.      ...+..
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            2 223555566666666666666666556666666666666666554433222211000000000000      011234


Q ss_pred             HhhhcccccccccCCCCC--CCCccccccccEEEccCCccccccCC
Q 010182          460 EERRSMLKLEGNNNEGEQ--MPTGWLTRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       460 ~~~l~~l~L~~N~i~~~~--~~~~~~~~~l~~l~l~~N~ls~~~~~  503 (516)
                      .++++.+++++|++++..  +..+...+.++.|++++|++++..+.
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  394 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE  394 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence            466777888888877665  44556667788888888888776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=4.3e-26  Score=240.26  Aligned_cols=277  Identities=21%  Similarity=0.263  Sum_probs=184.0

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch----------------
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD----------------  271 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~----------------  271 (516)
                      ++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++.                
T Consensus        90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~  167 (466)
T 1o6v_A           90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV  167 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC
T ss_pred             ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcc
Confidence            667777777777776665 7777777777777777776644 6677777777777776655432                


Q ss_pred             ----hhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCC
Q 010182          272 ----SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMA  347 (516)
Q Consensus       272 ----~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~  347 (516)
                          .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.  +..+++|+.|++++|.+..++ .+..++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~  243 (466)
T 1o6v_A          168 TDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLT  243 (466)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred             cCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCC
Confidence                2456677778888888777663 46777888888888887776654  334777777777777777653 466667


Q ss_pred             CCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182          348 SLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       348 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~  427 (516)
                      +|++|++++|.+++++. +..+++|+.|++++|.+  ..++. +..+++|+.|++++|+++.++. +..+++|+.|++++
T Consensus       244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI--SNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF  318 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC--CCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCS
T ss_pred             CCCEEECCCCccccchh-hhcCCCCCEEECCCCcc--Ccccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcC
Confidence            77777777777776644 66667777777777743  33333 5666667777777776666653 56666666666666


Q ss_pred             CCCCCCCHHHHhchhHHHH-HHHhhhhh---hHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          428 NPMVIPPVEVVKEGVGAVK-TFMAKRWL---DILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       428 N~l~~~~~~~~~~~~~~~~-~~~~~~~l---~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      |.+.+.++  +.. +..++ ..+..+.+   ..+...++++.+++++|++++..+  ....+.+..|++++|.+++.
T Consensus       319 n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          319 NNISDISP--VSS-LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SCCSCCGG--GGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CcCCCchh--hcc-CccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            66665543  111 00000 00111111   123455788999999999998765  66778899999999999984

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.3e-27  Score=236.99  Aligned_cols=245  Identities=26%  Similarity=0.344  Sum_probs=211.8

Q ss_pred             CCccEEEeecCCCC---cchHhhcCCCCCcEEEeec-CCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcE
Q 010182          208 KSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSN-NHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKI  281 (516)
Q Consensus       208 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~  281 (516)
                      .+++.|+++++.++   .+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999998   5888999999999999995 8777 67889999999999999999998 78888999999999


Q ss_pred             EEeeCCCCC-CCCcccccCCCCcEEeCCCCCCC-cCChhhhhcCC-CCcEEecCCCCCc-cccchhcCCCCCcEEEccCC
Q 010182          282 LDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELV-NLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFN  357 (516)
Q Consensus       282 L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n  357 (516)
                      |++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+. +|+.|++++|.+. .+|..+..+. |++|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999998 67889999999999999999998 6666655 466 9999999999998 6788888887 999999999


Q ss_pred             CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCH
Q 010182          358 ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       358 ~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      .+++ .+..+..+++|+.|++++|.+.  ..+..+..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++++..+
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            9986 6778999999999999999654  34445888999999999999999 778999999999999999999974322


Q ss_pred             HHHhchhHHHHHHHhhhhhhHhHHHhhhccccccccc-CCCC
Q 010182          436 EVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNN-NEGE  476 (516)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~-i~~~  476 (516)
                      ..                    ..+++++.+++++|. +.|.
T Consensus       286 ~~--------------------~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          286 QG--------------------GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CS--------------------TTGGGSCGGGTCSSSEEEST
T ss_pred             CC--------------------ccccccChHHhcCCCCccCC
Confidence            11                    145677888999997 5443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=8.8e-27  Score=239.72  Aligned_cols=267  Identities=21%  Similarity=0.234  Sum_probs=219.6

Q ss_pred             CCCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      ..+++.|+++++.++.+|.. |..+++|++|++++|.++.++ ..|..+++|++|++++|.++.++. .++.+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            37899999999999999875 788999999999999999885 489999999999999999998864 689999999999


Q ss_pred             eeCCCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCC-------------
Q 010182          284 VSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL-------------  349 (516)
Q Consensus       284 Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L-------------  349 (516)
                      +++|.++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++  +..+++|             
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence            999999999876 588999999999999999998887778999999999999998663  3334444             


Q ss_pred             ------cEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccE
Q 010182          350 ------RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIK  422 (516)
Q Consensus       350 ------~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~  422 (516)
                            ++|++++|.++.++..  ..++|+.|++++|.+.  .. ..+..+++|++|++++|.++.+ |..+..+++|+.
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLT--DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCc--cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                  5555555555554332  3467888999988554  33 4788899999999999999977 588999999999


Q ss_pred             EecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182          423 LNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL  501 (516)
Q Consensus       423 L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~  501 (516)
                      |++++|.++..+...                    ...++++.++|++|++++. ++.....+.++.|++++|++++..
T Consensus       277 L~L~~n~l~~~~~~~--------------------~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          277 LYISNNRLVALNLYG--------------------QPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             EECCSSCCCEEECSS--------------------SCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             EECCCCcCcccCccc--------------------CCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC
Confidence            999999987653211                    1356789999999999854 334556788999999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=4.7e-27  Score=255.48  Aligned_cols=106  Identities=31%  Similarity=0.432  Sum_probs=61.5

Q ss_pred             CCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.++.+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.++ ..++.+++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            4566666666666654 33456666666666666666655 555666666666666666665544 34555566666666


Q ss_pred             eCCCCC--CCCcccccCCCCcEEeCCCCCCC
Q 010182          285 SGNKLS--ALPDSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       285 s~n~l~--~l~~~l~~l~~L~~L~L~~n~l~  313 (516)
                      ++|.+.  .+|..++++++|++|++++|.++
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            666555  24555555666666655555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.1e-26  Score=243.63  Aligned_cols=271  Identities=23%  Similarity=0.249  Sum_probs=209.8

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC-Cc-chhhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE-TL-PDSIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~-~l-~~~l~~l~~L~~L~Ls~  286 (516)
                      -+.+++++++++.+|. +  .++|++|++++|.++.+ |..|+++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3468899999999987 3  38899999999999977 778999999999999999987 55 45789999999999999


Q ss_pred             CCCCCC-CcccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccc-cch-hcCCCCCcEEEccCCCCCC
Q 010182          287 NKLSAL-PDSISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFL-PTS-IGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l-~~~-l~~l~~L~~L~Ls~n~l~~  361 (516)
                      |.++.+ |..+..+++|++|++++|.++.  .....+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+++
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            999976 7789999999999999999986  3333466799999999999999977 444 7899999999999999887


Q ss_pred             c-chhhC----------------------------------CCCCCcEEEcccCCCCC----------------------
Q 010182          362 L-PATIG----------------------------------KLTNLEILNVSSNFTDM----------------------  384 (516)
Q Consensus       362 l-~~~l~----------------------------------~l~~L~~L~L~~n~~~~----------------------  384 (516)
                      + +..+.                                  .+++|++|++++|.+..                      
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            4 32222                                  23566777777664320                      


Q ss_pred             ----------------------------------------CCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEE
Q 010182          385 ----------------------------------------KELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKL  423 (516)
Q Consensus       385 ----------------------------------------~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L  423 (516)
                                                              ...+..++.+++|++|+|++|+++.+ |..+..+++|++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  328 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL  328 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence                                                    11234455566666666666666655 3566666666666


Q ss_pred             ecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          424 NLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       424 ~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                      +|++|.++..+...+                   ....+++.++|++|++++..+..+...+.++.|++++|++++..+
T Consensus       329 ~Ls~N~l~~~~~~~~-------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          329 NLSQNFLGSIDSRMF-------------------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             ECCSSCCCEECGGGG-------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCCccCCcChhHh-------------------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            666666655443322                   245788999999999998877788888999999999999998654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.4e-27  Score=253.07  Aligned_cols=104  Identities=23%  Similarity=0.210  Sum_probs=79.5

Q ss_pred             CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      +++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|+++++|++|++++|.|+.+|..  .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence            67788888888887665 4677788888888888888766 66778888888888888888877765  67788888888


Q ss_pred             CCCCCC--CCcccccCCCCcEEeCCCCCCC
Q 010182          286 GNKLSA--LPDSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       286 ~n~l~~--l~~~l~~l~~L~~L~L~~n~l~  313 (516)
                      +|.++.  +|..++.+++|++|++++|.++
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             CCccccccchhhhccCCcceEEEecCcccc
Confidence            887775  4567777777877777777665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=3e-26  Score=240.68  Aligned_cols=273  Identities=21%  Similarity=0.217  Sum_probs=212.3

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ++|++|++++|.++.+| .+..+++|++|++++|.++.++  ++.+++|++|++++|.++.++  ++.+++|++|++++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence            78999999999999887 6899999999999999999885  889999999999999999885  889999999999999


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCC-CCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-KIRFLPTSIGEMASLRHLDAHFNELHGLPATI  366 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l  366 (516)
                      .++.++  +..+++|++|++++|.++.++   +..+++|+.|++++| .+..+  .+..+++|++|++++|.+++++  +
T Consensus       117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l  187 (457)
T 3bz5_A          117 KLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--V  187 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--C
T ss_pred             cCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--c
Confidence            999885  888999999999999999875   346899999999999 55555  4778899999999999999986  7


Q ss_pred             CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhH---
Q 010182          367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVG---  443 (516)
Q Consensus       367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~---  443 (516)
                      ..+++|+.|++++|.+.  .+  .++.+++|+.|++++|+++.+|  +..+++|+.|++++|.++..+...+..-..   
T Consensus       188 ~~l~~L~~L~l~~N~l~--~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l  261 (457)
T 3bz5_A          188 SQNKLLNRLNCDTNNIT--KL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC  261 (457)
T ss_dssp             TTCTTCCEEECCSSCCS--CC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred             ccCCCCCEEECcCCcCC--ee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence            88899999999999654  33  3778899999999999999987  788899999999999998876432221000   


Q ss_pred             ---HHHH-HHhhhh-hhH--hHHHhhhcccccccccCCCCCCC--------CccccccccEEEccCCccccc
Q 010182          444 ---AVKT-FMAKRW-LDI--LLEEERRSMLKLEGNNNEGEQMP--------TGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       444 ---~~~~-~~~~~~-l~~--~~~~~~l~~l~L~~N~i~~~~~~--------~~~~~~~l~~l~l~~N~ls~~  500 (516)
                         .+.. .+..+. ...  .....+++.+++++|.+.+..+.        .....+++..|++++|+++|.
T Consensus       262 ~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL  333 (457)
T ss_dssp             TTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred             cCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence               0000 000000 000  11236677777777765443221        133446778888888888885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.2e-27  Score=235.88  Aligned_cols=223  Identities=28%  Similarity=0.341  Sum_probs=122.9

Q ss_pred             CCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCc---chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182          208 KSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVI---PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD  283 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l---~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~  283 (516)
                      +++++|++++|.++.+|.. |..+++|++|++++|.++.+   +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            4555666666665555542 45556666666666655533   3444555566666666665555555555556666666


Q ss_pred             eeCCCCCCCCc--ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCC
Q 010182          284 VSGNKLSALPD--SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNEL  359 (516)
Q Consensus       284 Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l  359 (516)
                      +++|.++.++.  .+..+++|++|++++|.++......+..+++|++|++++|.+..  +|..+..+++|++|++++|.+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            66665555432  45555566666666665555544444445566666666665553  445555555666666666655


Q ss_pred             CCc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCc-hhhhcCCC-cccEEecccCCCCC
Q 010182          360 HGL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHAL-PNTFGRLD-KLIKLNLEENPMVI  432 (516)
Q Consensus       360 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~-~L~~L~L~~N~l~~  432 (516)
                      +++ +..+..+++|+.|++++|.+.  .+ +..+..+++|+.|++++|+++.. |..+..++ +|+.|+|++|++..
T Consensus       188 ~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          188 EQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCcCHHHhcCCCCCCEEECCCCccC--ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            554 445555556666666665332  22 22445555666666666655543 24455553 56666666665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=4.4e-27  Score=253.68  Aligned_cols=289  Identities=16%  Similarity=0.130  Sum_probs=185.0

Q ss_pred             CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182          207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV  284 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  284 (516)
                      .+++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|.++++|++|++++|.|+.+|..  .+++|++|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence            378999999999998776 4789999999999999999977 67789999999999999999988876  7899999999


Q ss_pred             eCCCCCCCC--cccccCCCCcEEeCCCCCCCcCChhhhhcCCCC--cEEecCCCCC--c-cccchhcCC-----------
Q 010182          285 SGNKLSALP--DSISHCRSLVELDASFNRLAYLPTNIGHELVNL--QKLLVPLNKI--R-FLPTSIGEM-----------  346 (516)
Q Consensus       285 s~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L--~~L~L~~n~l--~-~l~~~l~~l-----------  346 (516)
                      ++|.++.++  ..+.++++|++|++++|.++....   ..+.+|  +.|++++|.+  . ..+..+..+           
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~  205 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP  205 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence            999998764  688889999999999988765322   223344  6666666655  1 111111110           


Q ss_pred             ----------------------------------------------------------------------CCCcEEEccC
Q 010182          347 ----------------------------------------------------------------------ASLRHLDAHF  356 (516)
Q Consensus       347 ----------------------------------------------------------------------~~L~~L~Ls~  356 (516)
                                                                                            .+|++|++++
T Consensus       206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~  285 (562)
T 3a79_B          206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN  285 (562)
T ss_dssp             SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred             ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence                                                                                  1344444444


Q ss_pred             CCCC-Ccchhh-----------------------------------------------------CCCCCCcEEEcccCCC
Q 010182          357 NELH-GLPATI-----------------------------------------------------GKLTNLEILNVSSNFT  382 (516)
Q Consensus       357 n~l~-~l~~~l-----------------------------------------------------~~l~~L~~L~L~~n~~  382 (516)
                      |.++ .+|..+                                                     ..+++|++|++++|.+
T Consensus       286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l  365 (562)
T 3a79_B          286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF  365 (562)
T ss_dssp             EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred             cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence            4443 222221                                                     4556666667766654


Q ss_pred             CCCCcchhhcCCCCccEEeccCCCCCCch---hhhcCCCcccEEecccCCCCC-CCHHHHhchhHHHHHHHhhhhhhH-h
Q 010182          383 DMKELPETFGELTNLKELDLSNNQIHALP---NTFGRLDKLIKLNLEENPMVI-PPVEVVKEGVGAVKTFMAKRWLDI-L  457 (516)
Q Consensus       383 ~~~~l~~~l~~l~~L~~L~L~~n~i~~lp---~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~  457 (516)
                      . ..+|..++.+++|+.|++++|+++.++   ..+..+++|+.|++++|.++. .+...+..........+..+.+.. .
T Consensus       366 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  444 (562)
T 3a79_B          366 T-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV  444 (562)
T ss_dssp             C-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred             c-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence            4 234556666667777777777666543   446666677777777776665 333222110000000011111110 0


Q ss_pred             -HHH-hhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          458 -LEE-ERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       458 -~~~-~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                       ... .+++.++|++|+++. .++..+..+.++.|++++|+++++.+
T Consensus       445 ~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~  490 (562)
T 3a79_B          445 FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPD  490 (562)
T ss_dssp             GSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred             hhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCH
Confidence             111 577888888888884 33444567788888888888886543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3.7e-27  Score=235.40  Aligned_cols=247  Identities=26%  Similarity=0.299  Sum_probs=215.0

Q ss_pred             CCCcEEEeecCCCC---CcchhhcCCCCccEEEeeC-CCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcE
Q 010182          231 AGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLAS-NLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVE  304 (516)
Q Consensus       231 ~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~  304 (516)
                      .+++.|++++|.+.   .+|..+..+++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999998   4799999999999999995 8887 78889999999999999999998 78889999999999


Q ss_pred             EeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCC-CCcEEEccCCCCCC-cchhhCCCCCCcEEEcccCC
Q 010182          305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMA-SLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNF  381 (516)
Q Consensus       305 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~-~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~  381 (516)
                      |++++|.++......+..+++|++|++++|.+. .+|..+..+. +|++|++++|.+++ +|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998444444556999999999999998 8889999998 99999999999985 788888887 9999999997


Q ss_pred             CCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHh
Q 010182          382 TDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEE  461 (516)
Q Consensus       382 ~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  461 (516)
                      +. ...+..+..+++|+.|+|++|+++..+..+..+++|++|++++|.+++..+..                   +...+
T Consensus       209 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------------------l~~l~  268 (313)
T 1ogq_A          209 LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-------------------LTQLK  268 (313)
T ss_dssp             EE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-------------------GGGCT
T ss_pred             cc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-------------------HhcCc
Confidence            65 35678899999999999999999977766889999999999999998443322                   22457


Q ss_pred             hhcccccccccCCCCCCCCccccccccEEEccCCc-ccc
Q 010182          462 RRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN-VSG  499 (516)
Q Consensus       462 ~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~-ls~  499 (516)
                      +++.++|++|+++|..+.. ...+.+..+++++|. +.|
T Consensus       269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            8899999999999876654 677889999999998 665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=3.2e-26  Score=245.88  Aligned_cols=152  Identities=22%  Similarity=0.246  Sum_probs=98.5

Q ss_pred             cCCCCCcEEEccCCCCCC-cc---hhhCCCCCCcEEEcccCCCCCCCcc---hhhcCCCCccEEeccCCCCCCchhhhcC
Q 010182          344 GEMASLRHLDAHFNELHG-LP---ATIGKLTNLEILNVSSNFTDMKELP---ETFGELTNLKELDLSNNQIHALPNTFGR  416 (516)
Q Consensus       344 ~~l~~L~~L~Ls~n~l~~-l~---~~l~~l~~L~~L~L~~n~~~~~~l~---~~l~~l~~L~~L~L~~n~i~~lp~~l~~  416 (516)
                      ..+++|++|++++|.+++ ++   ..+..+++|++|++++|.+  ..++   ..+..+++|++|++++|+++.+|..+..
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  408 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW  408 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC--CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc--cccccchhhhhcCCCCCEEECCCCCCccCChhhcc
Confidence            357788888888888877 32   2367778888888888844  4443   3477788888888888888888877778


Q ss_pred             CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHh-HHHhhhcccccccccCCCCCCCCccccccccEEEccCC
Q 010182          417 LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDIL-LEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE  495 (516)
Q Consensus       417 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N  495 (516)
                      +++|++|++++|.++..+..+.. .++  ...+..+.+..+ ...++++.++|++|+++.  +|.....++++.|++++|
T Consensus       409 ~~~L~~L~Ls~N~l~~l~~~~~~-~L~--~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          409 PEKMRFLNLSSTGIRVVKTCIPQ-TLE--VLDVSNNNLDSFSLFLPRLQELYISRNKLKT--LPDASLFPVLLVMKISRN  483 (549)
T ss_dssp             CTTCCEEECTTSCCSCCCTTSCT-TCS--EEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CCCGGGCTTCCEEECCSS
T ss_pred             cccccEEECCCCCcccccchhcC-Cce--EEECCCCChhhhcccCChhcEEECCCCccCc--CCCcccCccCCEEecCCC
Confidence            88888888888887765533211 000  000111111111 234567777777777773  344455667777777777


Q ss_pred             ccccccC
Q 010182          496 NVSGILG  502 (516)
Q Consensus       496 ~ls~~~~  502 (516)
                      ++++..+
T Consensus       484 ~l~~~~~  490 (549)
T 2z81_A          484 QLKSVPD  490 (549)
T ss_dssp             CCCCCCT
T ss_pred             ccCCcCH
Confidence            7777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.3e-26  Score=249.79  Aligned_cols=267  Identities=21%  Similarity=0.237  Sum_probs=220.0

Q ss_pred             CCCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      ..+++.++++++.++.+|.. |..+++|++|++++|.++.++ ..|+.+++|++|+|++|.++.++. .|+.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            36789999999999988874 788999999999999999875 589999999999999999998865 679999999999


Q ss_pred             eeCCCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEE----------
Q 010182          284 VSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHL----------  352 (516)
Q Consensus       284 Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L----------  352 (516)
                      |++|.++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+..++  +..+++|+.|          
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc
Confidence            999999999876 588999999999999999998887778999999999999998764  3344455554          


Q ss_pred             ---------EccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccE
Q 010182          353 ---------DAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIK  422 (516)
Q Consensus       353 ---------~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~  422 (516)
                               ++++|.++.++..+  .++|+.|+|++|.+.  + +..+..+++|+.|+|++|.++.+ |..+..+++|+.
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~--~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT--D-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC--C-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC--C-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence                     44555544443322  357888888888554  3 36788899999999999999977 588999999999


Q ss_pred             EecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182          423 LNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL  501 (516)
Q Consensus       423 L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~  501 (516)
                      |+|++|.++.++...                    ..++.++.|+|++|.+++. ++.+...+++..|++++|.+++..
T Consensus       283 L~Ls~N~l~~l~~~~--------------------~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          283 LYISNNRLVALNLYG--------------------QPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             EECTTSCCCEEECSS--------------------SCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             EECCCCCCCCCCccc--------------------ccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC
Confidence            999999998653211                    1356789999999999953 445567789999999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.5e-26  Score=244.01  Aligned_cols=143  Identities=24%  Similarity=0.278  Sum_probs=119.2

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~  288 (516)
                      ++|++++|+++.+|..+.  ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|+.+++|++|++++|.
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            579999999999998665  89999999999999875 6899999999999999999987 6689999999999999999


Q ss_pred             CCCCCcccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccchhcCCCCC--cEEEccCCCC
Q 010182          289 LSALPDSISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL--RHLDAHFNEL  359 (516)
Q Consensus       289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L--~~L~Ls~n~l  359 (516)
                      ++.+|..  .+++|++|++++|.++.++ +..+..+++|++|++++|.+..  ..+..+++|  ++|++++|.+
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            9999876  8999999999999998753 2345569999999999988764  234444444  5555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=3.5e-26  Score=227.23  Aligned_cols=271  Identities=23%  Similarity=0.268  Sum_probs=226.5

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchh-hcCCCCccEEEeeCCCCCCc---chhhcCCCCCcEEEee
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS-IAGLVNLEELNLASNLLETL---PDSIGLLDNLKILDVS  285 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l---~~~l~~l~~L~~L~Ls  285 (516)
                      -+.+++++++++.+|..+.  ++|++|++++|.++.+|.. |.++++|++|++++|.++.+   +..+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3579999999999987543  7899999999999999764 79999999999999999865   5677789999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCC--
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG--  361 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~--  361 (516)
                      +|.+..++..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+... +..+..+++|++|++++|.+++  
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            99999998889999999999999999998876 5566799999999999999855 4568889999999999999986  


Q ss_pred             cchhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          362 LPATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       362 l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      +|..+..+++|++|++++|.+.  .+ +..+..+++|++|++++|+++.++ ..+..+++|+.|++++|.+....+..+.
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             chhHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence            7888999999999999999654  44 678899999999999999999886 5789999999999999999877554332


Q ss_pred             chhHHHHHHHhhhhhhHhHHH-hhhcccccccccCCCCCCCCccc--cccccEEEccCCccccccCC
Q 010182          440 EGVGAVKTFMAKRWLDILLEE-ERRSMLKLEGNNNEGEQMPTGWL--TRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       440 ~~~~~~~~~~~~~~l~~~~~~-~~l~~l~L~~N~i~~~~~~~~~~--~~~l~~l~l~~N~ls~~~~~  503 (516)
                                         .. ..++.++|++|.+++.....++.  ......+....+.+.+..|.
T Consensus       245 -------------------~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          245 -------------------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             -------------------CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             -------------------hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence                               22 36889999999999875432221  12234455566777777665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7e-26  Score=227.69  Aligned_cols=204  Identities=30%  Similarity=0.393  Sum_probs=172.1

Q ss_pred             CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCC
Q 010182          229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS  308 (516)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~  308 (516)
                      ...+++.|++++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..+..+++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCcCChhhh--------hcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEccc
Q 010182          309 FNR-LAYLPTNIG--------HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSS  379 (516)
Q Consensus       309 ~n~-l~~l~~~~~--------~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~  379 (516)
                      +|. +..+|..+.        .++++|++|++++|.++.+|..+..+++|++|++++|.++++|..+..+++|++|++++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence            976 455665442        24788888888888888888888888888888888888888877788888888888888


Q ss_pred             CCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCC
Q 010182          380 NFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       380 n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      |.+. ..+|..++.+++|++|+|++|.+. .+|..+..+++|+.|+|++|++...
T Consensus       239 n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          239 CTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             Ccch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            7654 566777888888888888887655 5677788888888888888776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=6.5e-26  Score=237.15  Aligned_cols=225  Identities=27%  Similarity=0.436  Sum_probs=160.9

Q ss_pred             CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      .++++.|+|++|.++.++ ..|..+++|++|+|++|.+..+ +..|.++++|++|+|++|.|+.++. .|..+++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            356777777777777664 4577777777777777777766 3567777777777777777777765 567777777777


Q ss_pred             eeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182          284 VSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      +++|.++.++. .+..+++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.+++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence            77777776643 566677777777777 4466666666667777777777777777775 46677777777777777777


Q ss_pred             c-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182          362 L-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       362 l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      + +..+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++...
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            5 557777777777777777544 222455677777777777777777776 5567777777777777777543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.2e-25  Score=242.32  Aligned_cols=271  Identities=21%  Similarity=0.203  Sum_probs=204.0

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls  285 (516)
                      ...+++++++++++.+|..+.  ++|++|++++|.++.++ ..|.++++|++|++++|.|+.+ |..|..+++|++|+++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            445899999999999998654  89999999999999885 6899999999999999999987 5689999999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccccchhcCCCCC--cEEEccCCCC--C
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFLPTSIGEMASL--RHLDAHFNEL--H  360 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L--~~L~Ls~n~l--~  360 (516)
                      +|.++.+|..  .+++|++|++++|.++.++. ..+.++++|++|++++|.+...  .+..+++|  ++|++++|.+  +
T Consensus       109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~  184 (562)
T 3a79_B          109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK  184 (562)
T ss_dssp             TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred             CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence            9999999877  89999999999999998763 4566799999999999999853  45556666  9999999988  3


Q ss_pred             C-cchhhCCC----------------------------------------------------------------------
Q 010182          361 G-LPATIGKL----------------------------------------------------------------------  369 (516)
Q Consensus       361 ~-l~~~l~~l----------------------------------------------------------------------  369 (516)
                      + .|..+..+                                                                      
T Consensus       185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~  264 (562)
T 3a79_B          185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK  264 (562)
T ss_dssp             SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred             ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence            3 22222221                                                                      


Q ss_pred             -----------CCCcEEEcccCCCCCCCcchhh-----------------------------------------------
Q 010182          370 -----------TNLEILNVSSNFTDMKELPETF-----------------------------------------------  391 (516)
Q Consensus       370 -----------~~L~~L~L~~n~~~~~~l~~~l-----------------------------------------------  391 (516)
                                 ++|++|++++|.+. ..+|..+                                               
T Consensus       265 ~~~~~~~~~~~~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~  343 (562)
T 3a79_B          265 CSVKLFQFFWPRPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF  343 (562)
T ss_dssp             HHHHHHHHHTTSSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHhhhcccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence                       15666666666433 1233222                                               


Q ss_pred             ------cCCCCccEEeccCCCCCC-chhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182          392 ------GELTNLKELDLSNNQIHA-LPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS  464 (516)
Q Consensus       392 ------~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  464 (516)
                            ..+++|++|++++|+++. +|..+..+++|+.|++++|.++..+....                 .+....+++
T Consensus       344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------------~~~~l~~L~  406 (562)
T 3a79_B          344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL-----------------MTKNMSSLE  406 (562)
T ss_dssp             CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH-----------------TTTTCTTCC
T ss_pred             ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh-----------------hhcCCCCCC
Confidence                  567899999999999997 57889999999999999999987653211                 112345566


Q ss_pred             ccccccccCCCCCC-CCccccccccEEEccCCccccccC
Q 010182          465 MLKLEGNNNEGEQM-PTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       465 ~l~L~~N~i~~~~~-~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                      .+++++|++++..+ ..+...+.++.|++++|++++..+
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred             EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence            67777777766322 223344555666666666655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.5e-25  Score=220.42  Aligned_cols=221  Identities=28%  Similarity=0.349  Sum_probs=197.0

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n  287 (516)
                      -+.+++++++++.+|..+  .++|+.|++++|.++.++ ..|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            368999999999998754  479999999999999885 5789999999999999999977 568899999999999999


Q ss_pred             C-CCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182          288 K-LSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       288 ~-l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      . ++.+ +..+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            7 8877 67788999999999999999998887777899999999999999988754 7889999999999999999765


Q ss_pred             -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182          365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                       .+..+++|+.|++++|.+. ...|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++...
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             HHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence             5889999999999999654 233778899999999999999999987 6799999999999999999754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=8.1e-26  Score=237.22  Aligned_cols=225  Identities=24%  Similarity=0.423  Sum_probs=166.3

Q ss_pred             CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      .+++++|+|++|.++.+ +..|..+++|++|+|++|.++.+ +..|.++++|++|+|++|.++.++. .|..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            35677888888887766 44677788888888888887766 3577778888888888888877665 467778888888


Q ss_pred             eeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182          284 VSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      +++|.++.++. .+..+++|+.|++++ +.++.++...+.++++|+.|++++|++..+| .+..+++|++|++++|.+++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcc
Confidence            88888776654 566778888888877 4566777766667788888888888877774 46677778888888888777


Q ss_pred             c-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182          362 L-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       362 l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      + +..+..+++|+.|++++|.+. ...+..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++...
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            4 567777888888888887554 222456777778888888888888776 5567778888888888877644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=2.1e-26  Score=253.87  Aligned_cols=289  Identities=24%  Similarity=0.269  Sum_probs=199.1

Q ss_pred             CCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      ..++++|++++|.++.++. .|.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|. .|+.+++|++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            3678999999999887765 588889999999999988876 6678889999999999999988876 588899999999


Q ss_pred             eeCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-h--cCCCCCcEEEccCCCC
Q 010182          284 VSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-I--GEMASLRHLDAHFNEL  359 (516)
Q Consensus       284 Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l--~~l~~L~~L~Ls~n~l  359 (516)
                      +++|.++.++ ..+..+++|++|++++|.++..+...+..+++|++|++++|.++.++.. +  ..+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            9999888775 5688889999999999988877766666788899999999988866543 2  3457888888888888


Q ss_pred             CCcc-hhhCCC---------------------------CCCcEEEcccCCCCCCCcchhhcCCC--CccEEeccCCCCCC
Q 010182          360 HGLP-ATIGKL---------------------------TNLEILNVSSNFTDMKELPETFGELT--NLKELDLSNNQIHA  409 (516)
Q Consensus       360 ~~l~-~~l~~l---------------------------~~L~~L~L~~n~~~~~~l~~~l~~l~--~L~~L~L~~n~i~~  409 (516)
                      ++++ ..+..+                           ++|+.|++++|.+. ...+.++..++  +|++|++++|+++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCc
Confidence            7743 333322                           45666666666443 22244555553  37788888887776


Q ss_pred             ch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhh---------hh-----HhHHHhhhcccccccccCC
Q 010182          410 LP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRW---------LD-----ILLEEERRSMLKLEGNNNE  474 (516)
Q Consensus       410 lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~---------l~-----~~~~~~~l~~l~L~~N~i~  474 (516)
                      ++ ..+..+++|++|++++|.+....+..+..........+..+.         +.     .+....+++.+++++|+++
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            64 667777778888887777765544333221000000000000         00     1223456777777777777


Q ss_pred             CCCCCCccccccccEEEccCCc
Q 010182          475 GEQMPTGWLTRSTSWLKTVGEN  496 (516)
Q Consensus       475 ~~~~~~~~~~~~l~~l~l~~N~  496 (516)
                      +.....+...++++.|++++|.
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCB
T ss_pred             CCChhHhccccCCcEEECCCCc
Confidence            7655555555555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=4.5e-26  Score=244.69  Aligned_cols=174  Identities=22%  Similarity=0.310  Sum_probs=132.2

Q ss_pred             CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      .+++++|++++|.++.+ +..|..+++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            36799999999999876 457899999999999999998774 678999999999999999998776 488999999999


Q ss_pred             eeCCCCCCC--CcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCCCCcc-ccchhcCCCCCcEEEccCCCC
Q 010182          284 VSGNKLSAL--PDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASLRHLDAHFNEL  359 (516)
Q Consensus       284 Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~Ls~n~l  359 (516)
                      +++|.++.+  +..+..+++|++|++++|. ++.++...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            999998854  6778889999999999998 677776666678889999999888874 455565555555555555554


Q ss_pred             CCcchhh-CCCCCCcEEEcccC
Q 010182          360 HGLPATI-GKLTNLEILNVSSN  380 (516)
Q Consensus       360 ~~l~~~l-~~l~~L~~L~L~~n  380 (516)
                      ..++..+ ..+++|++|++++|
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESC
T ss_pred             cccchhhHhhcccccEEEccCC
Confidence            4443322 23444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.6e-25  Score=239.94  Aligned_cols=241  Identities=28%  Similarity=0.255  Sum_probs=155.0

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.|+.+|.   .+++|++|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            455555555555555544   34555555555555555544   44555555555555555544   3455555555555


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .++.+|..   +++|++|++++|.++.++.    ...+|+.|++++|.++.+|   ..+++|+.|++++|.++++|..  
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--  199 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--  199 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--
T ss_pred             CCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--
Confidence            55555443   2556666666666655543    2455666666666666555   3346677777777777776543  


Q ss_pred             CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHH
Q 010182          368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKT  447 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~  447 (516)
                       .++|+.|++++|.+  ..+|.   .+++|+.|+|++|+|+.+|   ..+++|+.|+|++|.|+.++.            
T Consensus       200 -~~~L~~L~L~~N~l--~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~------------  258 (622)
T 3g06_A          200 -PSELYKLWAYNNRL--TSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM------------  258 (622)
T ss_dssp             -CTTCCEEECCSSCC--SSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC------------
T ss_pred             -cchhhEEECcCCcc--cccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc------------
Confidence             35677777777743  34443   2467888888888888887   456788888888888886654            


Q ss_pred             HHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          448 FMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       448 ~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                                 ...+++.|+|++|+|+. .+..+...+++..|++++|.+++..+
T Consensus       259 -----------~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          259 -----------LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             -----------CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             -----------ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCH
Confidence                       12467889999999993 45567778899999999999988643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=3.7e-26  Score=248.36  Aligned_cols=269  Identities=23%  Similarity=0.218  Sum_probs=215.1

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ++++.|+++++.++.++ .+..+++|+.|++++|.++.+| .+ .+++|++|++++|..... ..+..+++|++|++++|
T Consensus       285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSS
T ss_pred             CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCC
Confidence            78999999999999888 7888899999999999998888 55 888999999999854421 14668889999999999


Q ss_pred             CCCCC---CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc--chhcCCCCCcEEEccCCCCCC-
Q 010182          288 KLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHG-  361 (516)
Q Consensus       288 ~l~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~-  361 (516)
                      .++.+   +..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+...+  ..+..+++|++|++++|.+++ 
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             ccCCCcchhhhhccCCcccEeECCCCccccchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence            88755   67788889999999999998887744 445889999999999888664  367888899999999998887 


Q ss_pred             cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          362 LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       362 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                      .|..+..+++|++|++++|.+....+|..++.+++|++|++++|+++.+ |..+..+++|+.|++++|+++...+..+. 
T Consensus       440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  518 (606)
T 3vq2_A          440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-  518 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-
T ss_pred             chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc-
Confidence            5677888899999999998655334677888899999999999999876 47788899999999999998876543332 


Q ss_pred             hhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccc-cccEEEccCCcccccc
Q 010182          441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTR-STSWLKTVGENVSGIL  501 (516)
Q Consensus       441 ~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~-~l~~l~l~~N~ls~~~  501 (516)
                                        ....++.++|++|+++..+ ..+...+ +++.+++++|.+++.-
T Consensus       519 ------------------~l~~L~~L~l~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          519 ------------------QLYSLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             ------------------TCTTCCEEECTTSCCCCEE-SCGGGSCTTCCEEECCSCCCCCSS
T ss_pred             ------------------CCCcCCEEECCCCcCcccC-HhHhhhcccCcEEEccCCCcccCC
Confidence                              3467888999999988433 3344444 5899999999888743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=4.6e-26  Score=231.24  Aligned_cols=274  Identities=20%  Similarity=0.168  Sum_probs=189.6

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~  286 (516)
                      ....++++++.++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..|..+++|++|++++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            34457777888887777544  578888888888887754 6778888888888888887664 4677788888888888


Q ss_pred             CCCCCCCcc-cccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCC-CCccc-cchhcCCCCCcEEEccCCCCCCc
Q 010182          287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLN-KIRFL-PTSIGEMASLRHLDAHFNELHGL  362 (516)
Q Consensus       287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l  362 (516)
                      |.++.++.. +..+++|++|++++|.++.++. ..+..+++|++|++++| .+..+ +..+..+++|++|++++|.++++
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            888877655 6777888888888888877776 55556788888888877 46655 34677777888888888887774


Q ss_pred             -chhhCCCCCCcEEEcccCCCCCCCcchhh-cCCCCccEEeccCCCCCCch-h---hhcCCCcccEEecccCCCCCCCHH
Q 010182          363 -PATIGKLTNLEILNVSSNFTDMKELPETF-GELTNLKELDLSNNQIHALP-N---TFGRLDKLIKLNLEENPMVIPPVE  436 (516)
Q Consensus       363 -~~~l~~l~~L~~L~L~~n~~~~~~l~~~l-~~l~~L~~L~L~~n~i~~lp-~---~l~~l~~L~~L~L~~N~l~~~~~~  436 (516)
                       +..+..+++|++|++++|.+  ..++..+ ..+++|+.|++++|.++.++ .   .......++.++++++.+.+....
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             CHHHHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence             66777788888888888843  4555443 45778888888888877653 2   223456677777777776532111


Q ss_pred             HHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182          437 VVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL  501 (516)
Q Consensus       437 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~  501 (516)
                      .               ....+...++++.+++++|+++......+...++++.|++++|.+++..
T Consensus       268 ~---------------l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          268 Q---------------VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             H---------------HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             h---------------hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            1               1122334567778888888887443322345677888888888777653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.6e-26  Score=249.06  Aligned_cols=109  Identities=28%  Similarity=0.431  Sum_probs=75.2

Q ss_pred             CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L  284 (516)
                      ++|++|++++|.++.++ ..|.++++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|++
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            56777777777776654 35667777777777777776653 566777777777777777776654 5667777777777


Q ss_pred             eCCCCCC--CCcccccCCCCcEEeCCCCCCCcCC
Q 010182          285 SGNKLSA--LPDSISHCRSLVELDASFNRLAYLP  316 (516)
Q Consensus       285 s~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~l~  316 (516)
                      ++|.++.  +|..+.++++|++|++++|.++.++
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            7777764  4667777777777777777665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.5e-25  Score=243.89  Aligned_cols=131  Identities=27%  Similarity=0.358  Sum_probs=101.8

Q ss_pred             CCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~  283 (516)
                      ..++++|||++|.|+.++. .|..+++|++|+|++|.|+.++ .+|.++++|++|+|++|+|+.+|. .|.++++|++|+
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            3578889999998888864 6888888999999988888874 468888888888888888888775 578888888888


Q ss_pred             eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCc
Q 010182          284 VSGNKLSALPD-SISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      +++|.++.++. .++++++|++|++++|.++.++ ...+..+++|++|++++|++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            88888887754 4777888888888888876543 233345777777777766553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=5e-26  Score=230.96  Aligned_cols=231  Identities=24%  Similarity=0.358  Sum_probs=202.5

Q ss_pred             hhCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcE
Q 010182          205 AAGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKI  281 (516)
Q Consensus       205 ~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~  281 (516)
                      ...+++++|++++|.++.++. .|..+++|++|++++|.++.+ +..|.++++|++|++++|.++.++.. ++.+++|++
T Consensus        49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            344689999999999998876 799999999999999999987 56799999999999999999999875 889999999


Q ss_pred             EEeeCCCCCCCCc--ccccCCCCcEEeCCCC-CCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCC
Q 010182          282 LDVSGNKLSALPD--SISHCRSLVELDASFN-RLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFN  357 (516)
Q Consensus       282 L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n  357 (516)
                      |++++|.++.++.  .+..+++|++|++++| .++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            9999999999976  6888999999999999 58888777777899999999999999866 678899999999999999


Q ss_pred             CCCCcchh-hCCCCCCcEEEcccCCCCCC------------------------------CcchhhcCCCCccEEeccCCC
Q 010182          358 ELHGLPAT-IGKLTNLEILNVSSNFTDMK------------------------------ELPETFGELTNLKELDLSNNQ  406 (516)
Q Consensus       358 ~l~~l~~~-l~~l~~L~~L~L~~n~~~~~------------------------------~l~~~l~~l~~L~~L~L~~n~  406 (516)
                      .++.++.. +..+++|+.|++++|.+...                              .+|..+..+++|++|++++|+
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            99887764 44588999999999966532                              245667889999999999999


Q ss_pred             CCCchhh-hcCCCcccEEecccCCCCCCCH
Q 010182          407 IHALPNT-FGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       407 i~~lp~~-l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      |+.+|.. +..+++|++|++++|++....+
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            9999855 5899999999999999987643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=233.77  Aligned_cols=227  Identities=25%  Similarity=0.431  Sum_probs=202.4

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~  286 (516)
                      ....+++++..++.+|..+.  ++++.|+|++|.+..+ +..|.++++|++|+|++|.|+.++ ..|..+++|++|+|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            46789999999999998654  7899999999999987 478999999999999999999876 5789999999999999


Q ss_pred             CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182          287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      |.++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+..+++|++|++++|.++.+|
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            99998865 588899999999999999999998888899999999998 46666655 6788999999999999999997


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                      . +..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|+..+...+.
T Consensus       202 ~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  276 (440)
T 3zyj_A          202 N-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT  276 (440)
T ss_dssp             C-CTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred             c-cCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence            4 788999999999999654 233678999999999999999999885 7899999999999999999998876654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.4e-25  Score=233.61  Aligned_cols=227  Identities=25%  Similarity=0.392  Sum_probs=201.8

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~  286 (516)
                      ....+++++.+++.+|..+.  ++|++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..|..+++|++|+|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45789999999999997554  7899999999999977 678999999999999999999776 5889999999999999


Q ss_pred             CCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182          287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      |.++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++ |.+..++. .+..+++|++|++++|.++++|
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  212 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP  212 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence            999988654 78899999999999999999998888899999999998 56777765 5788999999999999999986


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVK  439 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  439 (516)
                       .+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.+ +..+..+++|+.|+|++|.|+..+...+.
T Consensus       213 -~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  287 (452)
T 3zyi_A          213 -NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT  287 (452)
T ss_dssp             -CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred             -cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence             4788999999999999654 33377899999999999999999987 47899999999999999999988876553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=241.07  Aligned_cols=184  Identities=20%  Similarity=0.177  Sum_probs=113.6

Q ss_pred             CCCCcEEeCCCCCCCcCC--hhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcc--hhhCCCCCCcE
Q 010182          299 CRSLVELDASFNRLAYLP--TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP--ATIGKLTNLEI  374 (516)
Q Consensus       299 l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~  374 (516)
                      +++|++|++++|.++...  ...+..+++|+.|++++|.+..++..+..+++|++|++++|.+++++  ..+..+++|++
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            344445555555444332  12223455566666666655555555556666666666666655532  24566666666


Q ss_pred             EEcccCCCCCCCcchhhcCCCCccEEeccCCCCC--CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhh
Q 010182          375 LNVSSNFTDMKELPETFGELTNLKELDLSNNQIH--ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKR  452 (516)
Q Consensus       375 L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~  452 (516)
                      |++++|.+. ...+..+..+++|++|++++|.++  .+|..+..+++|++|++++|.++..++..+              
T Consensus       426 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------  490 (570)
T 2z63_A          426 LDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--------------  490 (570)
T ss_dssp             EECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--------------
T ss_pred             EeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh--------------
Confidence            666666443 233555666777777777777765  356667777777777777777765533222              


Q ss_pred             hhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182          453 WLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG  502 (516)
Q Consensus       453 ~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~  502 (516)
                           ...++++.+++++|++++..+..+...++++.+++++|.++|..+
T Consensus       491 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          491 -----NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             -----TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -----hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence                 234667888888888887766666667788888888888887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=3e-25  Score=250.52  Aligned_cols=275  Identities=23%  Similarity=0.196  Sum_probs=191.9

Q ss_pred             CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCC-CCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEE
Q 010182          207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNH-LEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKIL  282 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~-l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L  282 (516)
                      .+++++|+|++|.++.+ +..|..+++|++|++++|. +..+ |..|.++++|++|+|++|.++.+ |..|+.+++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            36788889988888866 4568888888888888884 4456 66788888888888888888866 6678888888888


Q ss_pred             EeeCCCCCC-CCcc--cccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccc-cchhcCC--CC-------
Q 010182          283 DVSGNKLSA-LPDS--ISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFL-PTSIGEM--AS-------  348 (516)
Q Consensus       283 ~Ls~n~l~~-l~~~--l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l--~~-------  348 (516)
                      +|++|.++. ++..  +.++++|++|++++|.++.+.. ..+.++++|++|++++|.+..+ +..+..+  ++       
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA  182 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence            888888874 3443  7788888888888888876643 3455688888888888877533 2233222  23       


Q ss_pred             -----------------------CcEEEccCCCCCC-cchhh------------------------------------CC
Q 010182          349 -----------------------LRHLDAHFNELHG-LPATI------------------------------------GK  368 (516)
Q Consensus       349 -----------------------L~~L~Ls~n~l~~-l~~~l------------------------------------~~  368 (516)
                                             |++|++++|.++. ++..+                                    ..
T Consensus       183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred             CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence                                   5666666664432 11111                                    01


Q ss_pred             --CCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182          369 --LTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV  445 (516)
Q Consensus       369 --l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  445 (516)
                        .++|+.|++++|.+. ...+..+..+++|+.|+|++|+|+.+ |..+..+++|++|+|++|.++......+       
T Consensus       263 l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------  334 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-------  334 (844)
T ss_dssp             TTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-------
T ss_pred             cccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-------
Confidence              245666777666443 22345566777777777777777766 3567777777777777777765543322       


Q ss_pred             HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182          446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL  501 (516)
Q Consensus       446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~  501 (516)
                                  ...++++.+++++|++++.....+...++++.|++++|.++++.
T Consensus       335 ------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          335 ------------YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             ------------SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             ------------cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence                        23467788899999888777667777888899999999888754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=4e-25  Score=249.45  Aligned_cols=269  Identities=26%  Similarity=0.298  Sum_probs=203.8

Q ss_pred             CCCccEEEeecCC-CCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCC-cchh--hcCCCCCc
Q 010182          207 GKSLEQVDLSSRG-LRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLET-LPDS--IGLLDNLK  280 (516)
Q Consensus       207 ~~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~-l~~~--l~~l~~L~  280 (516)
                      .++|++|++++|. +..+ |..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.++. ++..  ++.+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            3678888888884 3455 56788888888888888888866 7788888888888888888874 4443  77888888


Q ss_pred             EEEeeCCCCCCC--CcccccCCCCcEEeCCCCCCCcCChhhhhcC--C------------------------------CC
Q 010182          281 ILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIGHEL--V------------------------------NL  326 (516)
Q Consensus       281 ~L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l--~------------------------------~L  326 (516)
                      +|++++|.++.+  +..++++++|++|++++|.++.+....+..+  +                              +|
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L  206 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL  206 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence            888888888765  2467888888888888887765433222111  1                              27


Q ss_pred             cEEecCCCCCc-cccchh------------------------------------cC--CCCCcEEEccCCCCCCc-chhh
Q 010182          327 QKLLVPLNKIR-FLPTSI------------------------------------GE--MASLRHLDAHFNELHGL-PATI  366 (516)
Q Consensus       327 ~~L~L~~n~l~-~l~~~l------------------------------------~~--l~~L~~L~Ls~n~l~~l-~~~l  366 (516)
                      +.|++++|.+. ..+..+                                    ..  .++|+.|++++|.++++ +..+
T Consensus       207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~  286 (844)
T 3j0a_A          207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF  286 (844)
T ss_dssp             SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred             eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence            77777777544 111111                                    11  26799999999999885 6678


Q ss_pred             CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182          367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV  445 (516)
Q Consensus       367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~  445 (516)
                      ..+++|+.|+|++|.+. ...+..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|.+...+...+.      
T Consensus       287 ~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~------  359 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK------  359 (844)
T ss_dssp             SSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC------
T ss_pred             hcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc------
Confidence            99999999999999664 33356789999999999999999987 58899999999999999999887654332      


Q ss_pred             HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182          446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                                   ..++++.|+|++|.+++...     .+++..+++++|+++..
T Consensus       360 -------------~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l  396 (844)
T 3j0a_A          360 -------------FLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTL  396 (844)
T ss_dssp             -------------SCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCC
T ss_pred             -------------CCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccc
Confidence                         35678999999999986532     55677778888777754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=2.2e-24  Score=237.67  Aligned_cols=54  Identities=30%  Similarity=0.488  Sum_probs=30.3

Q ss_pred             CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEe
Q 010182          208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNL  261 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L  261 (516)
                      ++|+.|++++|.++.++ ..|..+++|++|++++|.+..+ +..+.++++|++|++
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL  303 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence            44777777777766543 3566667777777777666533 333333333333333

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=1.9e-24  Score=226.82  Aligned_cols=157  Identities=28%  Similarity=0.394  Sum_probs=90.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .+|++|++++|.++.++..   .++|++|++++|.++.+| .++++++|++|++++|.++.+|..+   .+|++|++++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence            3455555555555544321   146677777777666665 4666667777777777666665432   36666666666


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .++.+| .+..+++|++|++++|.++.++..    ..+|+.|++++|.+..+| .++.+++|++|++++|.++++|..  
T Consensus       184 ~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--  255 (454)
T 1jl5_A          184 QLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--  255 (454)
T ss_dssp             CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--
T ss_pred             cCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--
Confidence            666665 466666666666666666655432    245666666666665555 255555666666666655555432  


Q ss_pred             CCCCCcEEEcccC
Q 010182          368 KLTNLEILNVSSN  380 (516)
Q Consensus       368 ~l~~L~~L~L~~n  380 (516)
                       .++|+.|++++|
T Consensus       256 -~~~L~~L~l~~N  267 (454)
T 1jl5_A          256 -PPSLEALNVRDN  267 (454)
T ss_dssp             -CTTCCEEECCSS
T ss_pred             -ccccCEEECCCC
Confidence             244455555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.9e-24  Score=225.62  Aligned_cols=212  Identities=23%  Similarity=0.238  Sum_probs=184.4

Q ss_pred             hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEE
Q 010182          226 AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL  305 (516)
Q Consensus       226 ~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L  305 (516)
                      .++++++|++|++++|.++.+| .+..+++|++|++++|.++.++  ++.+++|++|++++|.++.++  ++.+++|++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            4677899999999999999886 7999999999999999999986  889999999999999999885  8899999999


Q ss_pred             eCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCC-CCCCcchhhCCCCCCcEEEcccCCCCC
Q 010182          306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN-ELHGLPATIGKLTNLEILNVSSNFTDM  384 (516)
Q Consensus       306 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~L~~n~~~~  384 (516)
                      ++++|.++.++   +..+++|++|++++|.++.++  ++.+++|++|++++| .+..+  .+..+++|+.|++++|.+  
T Consensus       112 ~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l--  182 (457)
T 3bz5_A          112 NCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI--  182 (457)
T ss_dssp             ECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC--
T ss_pred             ECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc--
Confidence            99999999886   456999999999999999874  888999999999999 45556  477899999999999955  


Q ss_pred             CCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182          385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS  464 (516)
Q Consensus       385 ~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  464 (516)
                      ..+|  ++.+++|+.|++++|+++.++  +..+++|+.|++++|.++.++.   .                   ..++++
T Consensus       183 ~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~---~-------------------~l~~L~  236 (457)
T 3bz5_A          183 TELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDV---T-------------------PLTQLT  236 (457)
T ss_dssp             CCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC---T-------------------TCTTCS
T ss_pred             ceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCc---c-------------------ccCCCC
Confidence            4565  788999999999999999984  8889999999999999998751   1                   234566


Q ss_pred             ccccccccCCCCC
Q 010182          465 MLKLEGNNNEGEQ  477 (516)
Q Consensus       465 ~l~L~~N~i~~~~  477 (516)
                      .+++++|++++..
T Consensus       237 ~L~l~~N~l~~~~  249 (457)
T 3bz5_A          237 YFDCSVNPLTELD  249 (457)
T ss_dssp             EEECCSSCCSCCC
T ss_pred             EEEeeCCcCCCcC
Confidence            7777777777654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2.9e-25  Score=222.03  Aligned_cols=215  Identities=20%  Similarity=0.263  Sum_probs=190.0

Q ss_pred             CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      .++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.++.    .++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence            368999999999999775 579999999999999999997755 8999999999999999987763    4899999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chh-cCCCCCcEEEccCCCCCCcc
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSI-GEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l-~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      +|.++.++..  .+++|++|++++|.++.++...+..+++|+.|++++|.+..++ ..+ ..+++|++|++++|.++.++
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            9999977543  4788999999999999988877778999999999999999764 444 47899999999999999986


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                      .. ..+++|++|++++|.  +..++..+..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.
T Consensus       186 ~~-~~l~~L~~L~Ls~N~--l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          186 GQ-VVFAKLKTLDLSSNK--LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CC-CCCTTCCEEECCSSC--CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cc-cccccCCEEECCCCc--CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            53 458999999999995  457777899999999999999999999988999999999999999997

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=4e-24  Score=224.29  Aligned_cols=183  Identities=33%  Similarity=0.407  Sum_probs=95.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      +++++|++++|.++.+|..   +++|++|++++|.++.++..   .++|++|++++|.++.+| .++.+++|++|++++|
T Consensus        91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence            3455566655555555432   25556666666655554321   145666666666665555 3555666666666666


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .++.+|..+   .+|++|++++|.++.++.  +..+++|+.|++++|.+..+|...   .+|++|++++|.++.+|. +.
T Consensus       164 ~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~  234 (454)
T 1jl5_A          164 SLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ  234 (454)
T ss_dssp             CCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT
T ss_pred             cCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC
Confidence            555554432   355666666666555542  234556666666666555544322   355666666666555553 55


Q ss_pred             CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182          368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      .+++|++|++++|.+  ..+|..   +++|+.|++++|+++.+|
T Consensus       235 ~l~~L~~L~l~~N~l--~~l~~~---~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          235 NLPFLTTIYADNNLL--KTLPDL---PPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             TCTTCCEEECCSSCC--SSCCSC---CTTCCEEECCSSCCSCCC
T ss_pred             CCCCCCEEECCCCcC--Cccccc---ccccCEEECCCCcccccC
Confidence            555666666666533  233321   234444444444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=1.4e-24  Score=213.48  Aligned_cols=247  Identities=25%  Similarity=0.264  Sum_probs=209.9

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFN  310 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n  310 (516)
                      -+.++.+++.++.+|..+  .++|++|++++|.++.++. .|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            478999999999998755  4699999999999998874 689999999999999999977 678899999999999999


Q ss_pred             C-CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCc
Q 010182          311 R-LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKEL  387 (516)
Q Consensus       311 ~-l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l  387 (516)
                      . ++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|.+  ..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~  168 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSV  168 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEE
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--ccc
Confidence            7 9988777777899999999999999977 5568889999999999999999765 588999999999999954  455


Q ss_pred             ch-hhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcc
Q 010182          388 PE-TFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSM  465 (516)
Q Consensus       388 ~~-~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  465 (516)
                      +. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++..+...+.                   ..++++.
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~  229 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-------------------PLRALQY  229 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-------------------TCTTCCE
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-------------------cCcccCE
Confidence            54 588999999999999999987 68999999999999999999988776543                   3567889


Q ss_pred             cccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182          466 LKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       466 l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~  503 (516)
                      +++++|.+.+..... |....+..+....|.+.+..|.
T Consensus       230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             EECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             EeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            999999999875543 2223345556777888877665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.1e-25  Score=224.71  Aligned_cols=220  Identities=20%  Similarity=0.154  Sum_probs=113.1

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCC--Ccchhhc-------CCCCccEEEeeCCCCC-Ccchhh--cCC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE--VIPDSIA-------GLVNLEELNLASNLLE-TLPDSI--GLL  276 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~--~l~~~l~-------~l~~L~~L~Ls~n~l~-~l~~~l--~~l  276 (516)
                      +|+.|++++|.+ .+|..+...  |+.|++++|.+.  .++..+.       ++++|++|++++|.++ .+|..+  ..+
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            344455555555 445443322  555555555553  2333333       4555666666666555 344433  555


Q ss_pred             CCCcEEEeeCCCCCCCCcccccC-----CCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc---ccchh--cCC
Q 010182          277 DNLKILDVSGNKLSALPDSISHC-----RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF---LPTSI--GEM  346 (516)
Q Consensus       277 ~~L~~L~Ls~n~l~~l~~~l~~l-----~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l--~~l  346 (516)
                      ++|++|++++|.++.+|..+..+     ++|++|++++|.++.++...+..+++|++|++++|++..   ++..+  ..+
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  200 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF  200 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence            56666666666555555444444     556666666666555554444455566666666655432   22222  455


Q ss_pred             CCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccE
Q 010182          347 ASLRHLDAHFNELHGLP----ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK  422 (516)
Q Consensus       347 ~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~  422 (516)
                      ++|++|++++|.++.++    ..+..+++|+.|++++|.+....-...+..+++|++|+|++|+|+.+|..+.  ++|++
T Consensus       201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~  278 (312)
T 1wwl_A          201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV  278 (312)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred             CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence            55666666666555422    1223455566666666543321101233445556666666666665554443  55666


Q ss_pred             EecccCCCCCC
Q 010182          423 LNLEENPMVIP  433 (516)
Q Consensus       423 L~L~~N~l~~~  433 (516)
                      |++++|+|+..
T Consensus       279 L~Ls~N~l~~~  289 (312)
T 1wwl_A          279 LDLSYNRLDRN  289 (312)
T ss_dssp             EECCSSCCCSC
T ss_pred             EECCCCCCCCC
Confidence            66666655544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1e-24  Score=217.56  Aligned_cols=219  Identities=22%  Similarity=0.249  Sum_probs=184.4

Q ss_pred             ccEEEeecCCCC--cchHhhc-------CCCCCcEEEeecCCCC-Ccchhh--cCCCCccEEEeeCCCCCCcchhhcCC-
Q 010182          210 LEQVDLSSRGLR--FLPEAFG-------RIAGLRLMSLSNNHLE-VIPDSI--AGLVNLEELNLASNLLETLPDSIGLL-  276 (516)
Q Consensus       210 L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~Ls~n~l~-~l~~~l--~~l~~L~~L~Ls~n~l~~l~~~l~~l-  276 (516)
                      ++.|++++|.++  .++..+.       .+++|++|++++|.++ .+|..+  ..+++|++|++++|.++.+|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            667788888775  3555444       7899999999999998 567766  89999999999999999888777766 


Q ss_pred             ----CCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCcC---Chh-hhhcCCCCcEEecCCCCCcccc---ch-h
Q 010182          277 ----DNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYL---PTN-IGHELVNLQKLLVPLNKIRFLP---TS-I  343 (516)
Q Consensus       277 ----~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l---~~~-~~~~l~~L~~L~L~~n~l~~l~---~~-l  343 (516)
                          ++|++|++++|.++.++ ..+..+++|++|++++|.+...   +.. .+..+++|++|++++|.++.++   .. +
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence                99999999999999886 7889999999999999997542   222 2356899999999999998543   23 3


Q ss_pred             cCCCCCcEEEccCCCCCCcc--hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCccc
Q 010182          344 GEMASLRHLDAHFNELHGLP--ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLI  421 (516)
Q Consensus       344 ~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~  421 (516)
                      ..+++|++|++++|.+++.+  ..+..+++|++|++++|.+.  .+|..+.  ++|++|+|++|+|+.+|. +..+++|+
T Consensus       225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~  299 (312)
T 1wwl_A          225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG  299 (312)
T ss_dssp             HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred             hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence            57799999999999999854  45667899999999999654  7787766  899999999999999986 89999999


Q ss_pred             EEecccCCCCCC
Q 010182          422 KLNLEENPMVIP  433 (516)
Q Consensus       422 ~L~L~~N~l~~~  433 (516)
                      +|++++|++++.
T Consensus       300 ~L~L~~N~l~~~  311 (312)
T 1wwl_A          300 NLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTCTTTCC
T ss_pred             EEeccCCCCCCC
Confidence            999999999865

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.3e-24  Score=228.28  Aligned_cols=214  Identities=21%  Similarity=0.256  Sum_probs=190.3

Q ss_pred             CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      ++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+++ +..+++|++|+|++|.|+.++.    .++|++|++++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~  108 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN  108 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence            48999999999999775 589999999999999999997655 8999999999999999988764    38999999999


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhc-CCCCCcEEEccCCCCCCcch
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIG-EMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~-~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      |.++.++..  .+++|+.|++++|.++.++...+..+++|+.|++++|.+..+ |..+. .+++|++|++++|.+++++.
T Consensus       109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            999987543  468999999999999988777777799999999999999964 55564 78999999999999999855


Q ss_pred             hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182          365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                       ...+++|+.|+|++|.  +.++|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|++.
T Consensus       187 -~~~l~~L~~L~Ls~N~--l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNK--LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -CCCCTTCCEEECCSSC--CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             -cccCCCCCEEECCCCC--CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence             4468999999999995  457778899999999999999999999999999999999999999997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=5.2e-24  Score=231.84  Aligned_cols=149  Identities=26%  Similarity=0.272  Sum_probs=133.2

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~  288 (516)
                      .+.++++.+++.+|..+.  +++++|+|++|.|+.++ .+|.++++|++|+|++|.|+.+++ +|..+++|++|+|++|+
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            467888889999997653  58999999999999985 589999999999999999998865 78999999999999999


Q ss_pred             CCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCC
Q 010182          289 LSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       289 l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      |+.+|. .|.++++|++|++++|.++.++...+.++++|++|++++|.+..  +|..++.+++|++|++++|.+++
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            998875 57899999999999999999998888889999999999999984  46778889999999999887754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1e-23  Score=206.35  Aligned_cols=220  Identities=26%  Similarity=0.301  Sum_probs=187.7

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~  288 (516)
                      ..+++.+..+..+|..+.  ++|++|++++|.++.++. .|.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            357778888888887654  689999999999998855 88999999999999999998765 78899999999999999


Q ss_pred             CCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCCcc-h
Q 010182          289 LSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHGLP-A  364 (516)
Q Consensus       289 l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~l~-~  364 (516)
                      ++.++ ..+..+++|++|++++|.++.++...+..+++|++|++++|.+..  +|..+..+++|++|++++|.+++++ .
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            99775 678889999999999999998887667779999999999999986  6788999999999999999999864 4


Q ss_pred             hhCCCCCCc----EEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182          365 TIGKLTNLE----ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       365 ~l~~l~~L~----~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      .+..+.+|+    .|++++|.+  ..++.......+|++|++++|+++.+| ..+..+++|+.|++++|++....
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCC--CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             HhhhhhhccccceeeecCCCcc--cccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            555555555    899999954  566665556668999999999999997 56789999999999999998653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-25  Score=224.26  Aligned_cols=265  Identities=22%  Similarity=0.233  Sum_probs=211.9

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      ..++..+++.+.+...+. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            345555666666654443 456678999999999999987 4689999999999999999997765 8899999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc-c
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL-P  363 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~  363 (516)
                      +|.++.++    ..++|++|++++|.++.++...   +++|+.|++++|.+..++. .+..+++|++|++++|.++++ +
T Consensus        89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           89 NNYVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             SSEEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             CCcccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence            99988664    3489999999999998876553   6889999999999998754 778899999999999999985 3


Q ss_pred             hhh-CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182          364 ATI-GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGV  442 (516)
Q Consensus       364 ~~l-~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  442 (516)
                      ..+ ..+++|++|++++|.+  ..++. ...+++|++|+|++|+|+.+|..+..+++|+.|++++|.++.++..+     
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l--~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-----  233 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFI--YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-----  233 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCC--CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-----
T ss_pred             HHHhhccCcCCEEECCCCcC--ccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-----
Confidence            444 4789999999999954  45543 34589999999999999999888999999999999999998654321     


Q ss_pred             HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCC-CCccccccccEEEccCC-ccccccCC
Q 010182          443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQM-PTGWLTRSTSWLKTVGE-NVSGILGG  503 (516)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~-~~~~~~~~l~~l~l~~N-~ls~~~~~  503 (516)
                                     ...++++.+++++|.+++..+ ......+.+..+++.+| .++|..+.
T Consensus       234 ---------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          234 ---------------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             ---------------CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ---------------hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence                           234678889999999984433 34445566778888743 56665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=5.3e-23  Score=222.98  Aligned_cols=224  Identities=32%  Similarity=0.338  Sum_probs=172.2

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++|++|+|++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.|+.+|..   +++|++|++++
T Consensus        80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~  150 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD  150 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred             CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence            4789999999999999987   67999999999999999877   578999999999999999874   48999999999


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI  366 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l  366 (516)
                      |.++.+|..   ..+|+.|++++|.++.++    ..+++|+.|++++|.++.+|..   +++|+.|++++|.++.+|.. 
T Consensus       151 N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~-  219 (622)
T 3g06_A          151 NQLASLPAL---PSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL-  219 (622)
T ss_dssp             SCCSCCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC-
T ss_pred             CcCCCcCCc---cCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC-
Confidence            999988753   467888888888888877    2368888888888888877653   35677777888777777643 


Q ss_pred             CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182          367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK  446 (516)
Q Consensus       367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~  446 (516)
                        +++|+.|++++|.+  ..+|   ..+++|+.|+|++|+|+.+|.   .+++|+.|+|++|.|+.+|..+         
T Consensus       220 --~~~L~~L~Ls~N~L--~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l---------  280 (622)
T 3g06_A          220 --PSGLKELIVSGNRL--TSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL---------  280 (622)
T ss_dssp             --CTTCCEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG---------
T ss_pred             --CCCCCEEEccCCcc--CcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH---------
Confidence              46777777777743  3455   455677777777777777765   5677777777777777554321         


Q ss_pred             HHHhhhhhhHhHHHhhhcccccccccCCCCCCCC
Q 010182          447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT  480 (516)
Q Consensus       447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~  480 (516)
                                 ...++++.++|++|.+++..+..
T Consensus       281 -----------~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          281 -----------IHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             -----------GGSCTTCEEECCSCCCCHHHHHH
T ss_pred             -----------hhccccCEEEecCCCCCCcCHHH
Confidence                       13456677777777777654443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=3.7e-23  Score=205.93  Aligned_cols=194  Identities=20%  Similarity=0.363  Sum_probs=101.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence            34555555555555554 34555555555555555555544 555555555555555555543 3445555555555555


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .++.++. +..+++|++|++++|.++.++.                         +..+++|++|++++|.+++++. +.
T Consensus       118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~-l~  170 (308)
T 1h6u_A          118 QITDVTP-LAGLSNLQVLYLDLNQITNISP-------------------------LAGLTNLQYLSIGNAQVSDLTP-LA  170 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred             CCCCchh-hcCCCCCCEEECCCCccCcCcc-------------------------ccCCCCccEEEccCCcCCCChh-hc
Confidence            5554432 4445555555555555444433                         4445555555555555555443 55


Q ss_pred             CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCH
Q 010182          368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      .+++|+.|++++|.+  ..++. +..+++|++|++++|+++.++ .+..+++|+.|++++|+++..+.
T Consensus       171 ~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          171 NLSKLTTLKADDNKI--SDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCCEEECCCCcc--CcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence            555555555555533  23332 455555666666666665555 25555666666666666554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=3.1e-22  Score=195.26  Aligned_cols=199  Identities=34%  Similarity=0.523  Sum_probs=140.9

Q ss_pred             CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCC
Q 010182          232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASF  309 (516)
Q Consensus       232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~  309 (516)
                      +.+.++++++.++.+|..+.  ++|++|++++|.++.++. .|..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            35556666666666655443  456666666666665554 556666666666666666666543 35566677777777


Q ss_pred             CCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCc
Q 010182          310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKEL  387 (516)
Q Consensus       310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l  387 (516)
                      |.++.++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.  .+
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~  172 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--RV  172 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc--Ee
Confidence            77666666666667777777777777776544 35677788888888888888655 4678888888888888544  34


Q ss_pred             c-hhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182          388 P-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       388 ~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      + ..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++....
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            3 35788899999999999999887 56888999999999999987653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.4e-24  Score=226.04  Aligned_cols=243  Identities=23%  Similarity=0.265  Sum_probs=197.5

Q ss_pred             CCcchHhhcCCC----CCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCc
Q 010182          220 LRFLPEAFGRIA----GLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD  294 (516)
Q Consensus       220 l~~l~~~~~~l~----~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~  294 (516)
                      ...+|..+..+.    +|++|+|++|.++.+ |..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.++.++.
T Consensus        19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE
T ss_pred             hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC
Confidence            346676665554    899999999999987 5689999999999999999997765 8899999999999999887653


Q ss_pred             ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCC-cchhhC-CCCC
Q 010182          295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG-LPATIG-KLTN  371 (516)
Q Consensus       295 ~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~-~l~~  371 (516)
                          .++|++|++++|.++.++..   .+++|+.|++++|.+..+ +..++.+++|++|++++|.+++ .|..+. .+++
T Consensus        98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence                38999999999999987764   368999999999999976 5578889999999999999998 455564 7899


Q ss_pred             CcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhh
Q 010182          372 LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAK  451 (516)
Q Consensus       372 L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~  451 (516)
                      |+.|+|++|.+  .+++. ...+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.++..+              
T Consensus       171 L~~L~Ls~N~l--~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l--------------  233 (487)
T 3oja_A          171 LEHLNLQYNFI--YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL--------------  233 (487)
T ss_dssp             CCEEECTTSCC--CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC--------------
T ss_pred             ccEEecCCCcc--ccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhh--------------
Confidence            99999999954  45543 44689999999999999999888999999999999999998755421              


Q ss_pred             hhhhHhHHHhhhcccccccccCCCCCCCC-ccccccccEEEcc
Q 010182          452 RWLDILLEEERRSMLKLEGNNNEGEQMPT-GWLTRSTSWLKTV  493 (516)
Q Consensus       452 ~~l~~~~~~~~l~~l~L~~N~i~~~~~~~-~~~~~~l~~l~l~  493 (516)
                            ...+.++.+++++|.+.+..++. +...+.+..+++.
T Consensus       234 ------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          234 ------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence                  12356788899999888543333 3334455555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.89  E-value=1.9e-24  Score=226.81  Aligned_cols=292  Identities=18%  Similarity=0.181  Sum_probs=179.1

Q ss_pred             CCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCCc-chhh-cCCC----CccEEEeeCCCCC-----Ccch
Q 010182          208 KSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEVI-PDSI-AGLV----NLEELNLASNLLE-----TLPD  271 (516)
Q Consensus       208 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l-~~l~----~L~~L~Ls~n~l~-----~l~~  271 (516)
                      +++++|++++|.++     .++..+..+++|++|++++|.++.. +..+ ..++    +|++|++++|.++     .++.
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            57788888888777     4456677778888888888777632 2222 2333    5888888888777     3456


Q ss_pred             hhcCCCCCcEEEeeCCCCCCC-----Cccc-ccCCCCcEEeCCCCCCCcCC----hhhhhcCCCCcEEecCCCCCccc--
Q 010182          272 SIGLLDNLKILDVSGNKLSAL-----PDSI-SHCRSLVELDASFNRLAYLP----TNIGHELVNLQKLLVPLNKIRFL--  339 (516)
Q Consensus       272 ~l~~l~~L~~L~Ls~n~l~~l-----~~~l-~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~l--  339 (516)
                      .+..+++|++|++++|.++..     ...+ ...++|++|++++|.++...    ...+..+++|++|++++|.+...  
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            677777888888888776521     1121 22456788888877776533    22233467778888877776632  


Q ss_pred             ---cchhc-CCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc----chhhcCCCCccEEeccCCC
Q 010182          340 ---PTSIG-EMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL----PETFGELTNLKELDLSNNQ  406 (516)
Q Consensus       340 ---~~~l~-~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l----~~~l~~l~~L~~L~L~~n~  406 (516)
                         ...+. ..++|++|++++|.++.     ++..+..+++|++|++++|.++..++    +..+..+++|++|++++|.
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence               11221 24577777777777776     45666677777777777775442221    1222356777777777777


Q ss_pred             CCC-----chhhhcCCCcccEEecccCCCCCCCHHHHhchhHH----HH-HHHhh---------hhhhHhHHHhhhcccc
Q 010182          407 IHA-----LPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGA----VK-TFMAK---------RWLDILLEEERRSMLK  467 (516)
Q Consensus       407 i~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~----~~-~~~~~---------~~l~~~~~~~~l~~l~  467 (516)
                      |+.     ++..+..+++|++|++++|.+++.+...+...+..    ++ ..+..         .+...+...+.++.++
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  347 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ  347 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence            775     56667777777777777777654443333322110    00 00000         0112223446778888


Q ss_pred             cccccCCCCCCCCccc-----cccccEEEccCCcccc
Q 010182          468 LEGNNNEGEQMPTGWL-----TRSTSWLKTVGENVSG  499 (516)
Q Consensus       468 L~~N~i~~~~~~~~~~-----~~~l~~l~l~~N~ls~  499 (516)
                      +++|++++..+..+..     .+.+..|++++|++++
T Consensus       348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            8888887654443332     4578888888888875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=5.5e-23  Score=201.09  Aligned_cols=222  Identities=24%  Similarity=0.269  Sum_probs=186.0

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRL  312 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l  312 (516)
                      .++..+..+..+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence            46667777888887664  589999999999998876 78899999999999999997754 688899999999999999


Q ss_pred             CcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC--cchhhCCCCCCcEEEcccCCCCCCCc-c
Q 010182          313 AYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSNFTDMKEL-P  388 (516)
Q Consensus       313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~  388 (516)
                      +.++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++.  +|..+..+++|++|++++|.+.  .+ +
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~--~~~~  166 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--SIYC  166 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--EECG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC--cCCH
Confidence            99887777789999999999999997765 68889999999999999988  6889999999999999999654  33 3


Q ss_pred             hhhcCCCCcc----EEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182          389 ETFGELTNLK----ELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS  464 (516)
Q Consensus       389 ~~l~~l~~L~----~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  464 (516)
                      ..+..+.+|+    .|++++|.++.++.......+|+.|++++|.++..+...+.                   ...+++
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------------------~l~~L~  227 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD-------------------RLTSLQ  227 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT-------------------TCCSCC
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc-------------------cccccc
Confidence            4555555555    89999999999886666667999999999999987764433                   356788


Q ss_pred             ccccccccCCCCCCC
Q 010182          465 MLKLEGNNNEGEQMP  479 (516)
Q Consensus       465 ~l~L~~N~i~~~~~~  479 (516)
                      .+++++|.++|....
T Consensus       228 ~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          228 KIWLHTNPWDCSCPR  242 (276)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEccCCcccccCCc
Confidence            899999999987643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.89  E-value=2.8e-22  Score=199.58  Aligned_cols=166  Identities=20%  Similarity=0.304  Sum_probs=130.5

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL  138 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC
Confidence            4889999999999999887 999999999999999999885 68999999999999999999875 88999999999999


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI  366 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l  366 (516)
                      |.++.++. +..+++|++|++++|.++.++.  +..+++|+.|++++|.+..++. +..+++|++|++++|.+++++. +
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l  213 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-L  213 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-G
T ss_pred             CccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-c
Confidence            99998865 8889999999999998887665  3446666666666666665543 4555555555555555555442 4


Q ss_pred             CCCCCCcEEEcccC
Q 010182          367 GKLTNLEILNVSSN  380 (516)
Q Consensus       367 ~~l~~L~~L~L~~n  380 (516)
                      ..+++|+.|++++|
T Consensus       214 ~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          214 ANTSNLFIVTLTNQ  227 (308)
T ss_dssp             TTCTTCCEEEEEEE
T ss_pred             cCCCCCCEEEccCC
Confidence            44455555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.3e-22  Score=197.33  Aligned_cols=201  Identities=27%  Similarity=0.333  Sum_probs=140.3

Q ss_pred             hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEE
Q 010182          227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL  305 (516)
Q Consensus       227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L  305 (516)
                      +.++++++.++++++.++.+|..+.  +++++|++++|.++.++ ..|..+++|++|++++|.++.++.. ..+++|++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            3455666666666666666655443  46666666666666543 3566666666666666666655433 556666666


Q ss_pred             eCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCC
Q 010182          306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTD  383 (516)
Q Consensus       306 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~  383 (516)
                      ++++|.++.++..+ ..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.+.
T Consensus        83 ~Ls~N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            66666666665543 34666777777777776665 356777778888888888877654 4577888888888888543


Q ss_pred             CCCcch-hhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182          384 MKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       384 ~~~l~~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                        .+|. .+..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|++...
T Consensus       162 --~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          162 --ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             --CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             --ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence              5554 45778999999999999999998888889999999999999754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=4.6e-22  Score=196.28  Aligned_cols=197  Identities=30%  Similarity=0.332  Sum_probs=179.1

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      .++++.+++++++++.+|..+.  ++++.|++++|.++.+ +..|..+++|++|++++|.|+.++.. +.+++|++|+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            3678999999999999987654  7899999999999977 56899999999999999999988764 789999999999


Q ss_pred             CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182          286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      +|.++.+|..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.+|.
T Consensus        86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            999999999999999999999999999999988888899999999999999988764 5789999999999999999876


Q ss_pred             -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC
Q 010182          365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH  408 (516)
Q Consensus       365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~  408 (516)
                       .+..+++|+.|+|++|.+  ..+|..+....+|+.|+|++|.+.
T Consensus       166 ~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          166 GLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             HHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCcc
Confidence             467899999999999954  588888888999999999999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=4.3e-24  Score=224.08  Aligned_cols=293  Identities=17%  Similarity=0.144  Sum_probs=214.9

Q ss_pred             CCccEEEeecCCCCcch--HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCCc-ch-hhcCCC-
Q 010182          208 KSLEQVDLSSRGLRFLP--EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLETL-PD-SIGLLD-  277 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~l-~~-~l~~l~-  277 (516)
                      +++++|+++++.++..+  ..+..+++|++|++++|.++     .++..+..+++|++|++++|.++.. +. .+..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            56899999999998543  34788999999999999998     4577889999999999999998842 22 233344 


Q ss_pred             ---CCcEEEeeCCCCC-----CCCcccccCCCCcEEeCCCCCCCcCCh-----hhhhcCCCCcEEecCCCCCcc-----c
Q 010182          278 ---NLKILDVSGNKLS-----ALPDSISHCRSLVELDASFNRLAYLPT-----NIGHELVNLQKLLVPLNKIRF-----L  339 (516)
Q Consensus       278 ---~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~-----l  339 (516)
                         +|++|++++|.++     .++..+..+++|++|++++|.++....     ......++|++|++++|.++.     +
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               7999999999998     357788899999999999999864322     222235689999999999884     4


Q ss_pred             cchhcCCCCCcEEEccCCCCCCc-----chhhC-CCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCc
Q 010182          340 PTSIGEMASLRHLDAHFNELHGL-----PATIG-KLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHAL  410 (516)
Q Consensus       340 ~~~l~~l~~L~~L~Ls~n~l~~l-----~~~l~-~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~l  410 (516)
                      +..+..+++|++|++++|.+++.     ...+. ..++|++|++++|.++...   ++..+..+++|++|++++|.++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            56677889999999999998762     22222 4679999999999765432   577788899999999999998853


Q ss_pred             -----h-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHH----Hhhhhhh-----HhHHH-----hhhccccccc
Q 010182          411 -----P-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTF----MAKRWLD-----ILLEE-----ERRSMLKLEG  470 (516)
Q Consensus       411 -----p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~----~~~~~l~-----~~~~~-----~~l~~l~L~~  470 (516)
                           + ..+..+++|++|++++|.++..+...+...+.....+    +..+.+.     .+...     .+++.+++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                 2 2334689999999999999865544343322211100    1111111     11111     4788888888


Q ss_pred             ccCCCCCC----CCccccccccEEEccCCccccc
Q 010182          471 NNNEGEQM----PTGWLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       471 N~i~~~~~----~~~~~~~~l~~l~l~~N~ls~~  500 (516)
                      |.+++...    ..+...+.++.|++++|++++.
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            88886632    2223447889999999988875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=4e-23  Score=212.10  Aligned_cols=229  Identities=21%  Similarity=0.257  Sum_probs=187.9

Q ss_pred             CCCccEEEeecCCCCc-----chHhhcCCCCCcEEEeecCCCCC----cchhh-------cCCCCccEEEeeCCCCCC--
Q 010182          207 GKSLEQVDLSSRGLRF-----LPEAFGRIAGLRLMSLSNNHLEV----IPDSI-------AGLVNLEELNLASNLLET--  268 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~----l~~~l-------~~l~~L~~L~Ls~n~l~~--  268 (516)
                      .++|++|++++|.++.     ++..+..+++|++|+|++|.+..    +|.++       ..+++|++|+|++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4789999999999884     44557889999999999986653    34444       789999999999999996  


Q ss_pred             ---cchhhcCCCCCcEEEeeCCCCCC-----CCcccccC---------CCCcEEeCCCCCCC--cCCh--hhhhcCCCCc
Q 010182          269 ---LPDSIGLLDNLKILDVSGNKLSA-----LPDSISHC---------RSLVELDASFNRLA--YLPT--NIGHELVNLQ  327 (516)
Q Consensus       269 ---l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l---------~~L~~L~L~~n~l~--~l~~--~~~~~l~~L~  327 (516)
                         ++..+..+++|++|+|++|.++.     ++..+..+         ++|++|++++|.++  .++.  ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               67788899999999999999872     33344445         89999999999997  3332  2344688999


Q ss_pred             EEecCCCCCc------cccchhcCCCCCcEEEccCCCCC-----CcchhhCCCCCCcEEEcccCCCCCC---Ccchhh--
Q 010182          328 KLLVPLNKIR------FLPTSIGEMASLRHLDAHFNELH-----GLPATIGKLTNLEILNVSSNFTDMK---ELPETF--  391 (516)
Q Consensus       328 ~L~L~~n~l~------~l~~~l~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~L~~n~~~~~---~l~~~l--  391 (516)
                      +|++++|.++      .++..+..+++|++|+|++|.++     .++..+..+++|+.|+|++|.+...   .++..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            9999999998      23337889999999999999995     3788899999999999999966532   135666  


Q ss_pred             cCCCCccEEeccCCCCCC-----chhhh-cCCCcccEEecccCCCCCCCH
Q 010182          392 GELTNLKELDLSNNQIHA-----LPNTF-GRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       392 ~~l~~L~~L~L~~n~i~~-----lp~~l-~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      +.+++|+.|+|++|.|+.     +|..+ .++++|+.|++++|+++..+.
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            348999999999999997     88777 668999999999999998774

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.5e-21  Score=190.50  Aligned_cols=197  Identities=33%  Similarity=0.462  Sum_probs=175.1

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls  285 (516)
                      ...+.++++++.++.+|..+.  ++|+.|++++|.++.++. .|.++++|++|++++|.++.++. .|..+++|++|+++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            457899999999999987554  789999999999998864 79999999999999999999886 45889999999999


Q ss_pred             CCCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcc
Q 010182          286 GNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       286 ~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      +|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            999998865 467899999999999999999988888899999999999999988765 788999999999999999976


Q ss_pred             h-hhCCCCCCcEEEcccCCCCCCCcch-hhcCCCCccEEeccCCCCC
Q 010182          364 A-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIH  408 (516)
Q Consensus       364 ~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~i~  408 (516)
                      . .+..+++|++|++++|.+.  .++. .+..+++|+.|+|++|.+.
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhHhccCCCcCEEECCCCcCC--cCCHHHhccccCCCEEEecCCCee
Confidence            5 5888999999999999654  4544 5788999999999999876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.6e-23  Score=215.04  Aligned_cols=248  Identities=19%  Similarity=0.233  Sum_probs=193.9

Q ss_pred             eecCCCCcchHhhcCCCCCcEEEeecCCCCC-----cchhhcCCCCccEEEeeCCCCCCc----chhh-------cCCCC
Q 010182          215 LSSRGLRFLPEAFGRIAGLRLMSLSNNHLEV-----IPDSIAGLVNLEELNLASNLLETL----PDSI-------GLLDN  278 (516)
Q Consensus       215 L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~~l----~~~l-------~~l~~  278 (516)
                      ++...+..++..+..+++|+.|+|++|.++.     ++..+..+++|++|+|++|.+..+    |..+       ..+++
T Consensus        16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence            3333444677788889999999999999884     345578899999999999877633    4333       68899


Q ss_pred             CcEEEeeCCCCCC-----CCcccccCCCCcEEeCCCCCCCcCChhhh----hcC---------CCCcEEecCCCCCc--c
Q 010182          279 LKILDVSGNKLSA-----LPDSISHCRSLVELDASFNRLAYLPTNIG----HEL---------VNLQKLLVPLNKIR--F  338 (516)
Q Consensus       279 L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l~~~~~----~~l---------~~L~~L~L~~n~l~--~  338 (516)
                      |++|+|++|.++.     ++..+..+++|++|++++|.++......+    ..+         ++|++|++++|.++  .
T Consensus        96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~  175 (386)
T 2ca6_A           96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS  175 (386)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence            9999999999986     67788899999999999999874332222    223         89999999999996  3


Q ss_pred             cc---chhcCCCCCcEEEccCCCCCC------cchhhCCCCCCcEEEcccCCCCC---CCcchhhcCCCCccEEeccCCC
Q 010182          339 LP---TSIGEMASLRHLDAHFNELHG------LPATIGKLTNLEILNVSSNFTDM---KELPETFGELTNLKELDLSNNQ  406 (516)
Q Consensus       339 l~---~~l~~l~~L~~L~Ls~n~l~~------l~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~  406 (516)
                      ++   ..+..+++|++|++++|.++.      ++..+..+++|+.|+|++|.++.   ..++..+..+++|++|+|++|.
T Consensus       176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            44   467788999999999999983      33378899999999999996532   4567788999999999999999


Q ss_pred             CCCc-----hhhhcC--CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHh-HHHhhhcccccccccCCCCC
Q 010182          407 IHAL-----PNTFGR--LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDIL-LEEERRSMLKLEGNNNEGEQ  477 (516)
Q Consensus       407 i~~l-----p~~l~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~L~~N~i~~~~  477 (516)
                      |+..     +..+..  +++|+.|+|++|.++..+...+..               .+ ...++++.+++++|.+++..
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---------------~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---------------VIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---------------HHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---------------HHHhcCCCceEEEccCCcCCcch
Confidence            9853     667744  999999999999987532222211               11 23478899999999999775

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=5.7e-22  Score=197.38  Aligned_cols=221  Identities=20%  Similarity=0.229  Sum_probs=179.8

Q ss_pred             CCccEEEeecCCCCc--chH--hhcCCCCCcEEEeecCCCCC-cchhh--cCCCCccEEEeeCCCCCCc-c----hhhcC
Q 010182          208 KSLEQVDLSSRGLRF--LPE--AFGRIAGLRLMSLSNNHLEV-IPDSI--AGLVNLEELNLASNLLETL-P----DSIGL  275 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~--l~~--~~~~l~~L~~L~Ls~n~l~~-l~~~l--~~l~~L~~L~Ls~n~l~~l-~----~~l~~  275 (516)
                      ..++.+.+.++.+..  +..  .+..+++|++|++++|.+.. .|..+  ..+++|++|++++|.++.. +    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            567889998888762  221  12335779999999999984 46666  8899999999999999852 2    24457


Q ss_pred             CCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCc---CCh-hhhhcCCCCcEEecCCCCCccccch----hcCC
Q 010182          276 LDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAY---LPT-NIGHELVNLQKLLVPLNKIRFLPTS----IGEM  346 (516)
Q Consensus       276 l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~l~~~----l~~l  346 (516)
                      +++|++|++++|.+..++ ..+..+++|++|++++|.+..   ++. .....+++|++|++++|+++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            899999999999999775 678899999999999999753   222 2234689999999999999866552    4778


Q ss_pred             CCCcEEEccCCCCCCc-chhhCCC---CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccE
Q 010182          347 ASLRHLDAHFNELHGL-PATIGKL---TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK  422 (516)
Q Consensus       347 ~~L~~L~Ls~n~l~~l-~~~l~~l---~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~  422 (516)
                      ++|++|++++|.++++ |..+..+   ++|++|+|++|.+.  .+|..+.  ++|++|+|++|+|+.+|. +..+++|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence            9999999999999996 7766666   69999999999654  7777664  799999999999999875 788999999


Q ss_pred             EecccCCCCCC
Q 010182          423 LNLEENPMVIP  433 (516)
Q Consensus       423 L~L~~N~l~~~  433 (516)
                      |+|++|++++.
T Consensus       299 L~L~~N~l~~~  309 (310)
T 4glp_A          299 LTLDGNPFLVP  309 (310)
T ss_dssp             EECSSTTTSCC
T ss_pred             EECcCCCCCCC
Confidence            99999999865

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=9.8e-22  Score=188.07  Aligned_cols=200  Identities=19%  Similarity=0.288  Sum_probs=152.8

Q ss_pred             CCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCC-CCCcch-hhcCCCCCcEEEeeC-CCCCCCC-c
Q 010182          220 LRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNL-LETLPD-SIGLLDNLKILDVSG-NKLSALP-D  294 (516)
Q Consensus       220 l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~-l~~l~~-~l~~l~~L~~L~Ls~-n~l~~l~-~  294 (516)
                      ++.+|. +.  ++|++|++++|.++.++. .|.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.++ .
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            677776 33  478888888888887754 67788888888888886 777765 677888888888887 7888775 4


Q ss_pred             ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCc---EEecCCC-CCccccc-hhcCCCCCc-EEEccCCCCCCcchhhCC
Q 010182          295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQ---KLLVPLN-KIRFLPT-SIGEMASLR-HLDAHFNELHGLPATIGK  368 (516)
Q Consensus       295 ~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~l~~-~l~~l~~L~-~L~Ls~n~l~~l~~~l~~  368 (516)
                      .+..+++|++|++++|.++.+|.  +..+.+|+   .|++++| .++.++. .+..+++|+ +|++++|.++.+|.....
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence            56778888888888888887776  44577777   8888888 8887765 467788888 888888888887665444


Q ss_pred             CCCCcEEEcccCC-CCCCCc-chhhcCC-CCccEEeccCCCCCCchhhhcCCCcccEEecccC
Q 010182          369 LTNLEILNVSSNF-TDMKEL-PETFGEL-TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN  428 (516)
Q Consensus       369 l~~L~~L~L~~n~-~~~~~l-~~~l~~l-~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N  428 (516)
                      .++|+.|++++|. +.  .+ +..+..+ ++|+.|++++|+|+.+|..  .+++|+.|+++++
T Consensus       178 ~~~L~~L~L~~n~~l~--~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          178 GTKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCEEEEEECTTCTTCC--EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCCEEEcCCCCCcc--cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            4788888888883 43  44 3457777 8899999999999888754  6788888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.1e-21  Score=191.59  Aligned_cols=204  Identities=29%  Similarity=0.418  Sum_probs=124.2

Q ss_pred             CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCC
Q 010182          229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS  308 (516)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~  308 (516)
                      .+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.                    
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~--------------------   96 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ--------------------   96 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC--------------------
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc--------------------
Confidence            3455555555555555442 3444555555555555555442 34444455555555554                    


Q ss_pred             CCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCC
Q 010182          309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKE  386 (516)
Q Consensus       309 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~  386 (516)
                         ++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.+++++. .+..+++|+.|++++|.+.  .
T Consensus        97 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~  171 (272)
T 3rfs_A           97 ---LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--S  171 (272)
T ss_dssp             ---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--C
T ss_pred             ---cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--c
Confidence               4444444444455555555555555544332 4556667777777776666543 3567777777777777544  3


Q ss_pred             cc-hhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182          387 LP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS  464 (516)
Q Consensus       387 l~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  464 (516)
                      ++ ..++.+++|++|++++|+++.++ ..+..+++|+.|++++|++....                          +.++
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--------------------------~~l~  225 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--------------------------PGIR  225 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT--------------------------TTTH
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC--------------------------cHHH
Confidence            33 34677888888888888888876 55788899999999999886432                          2345


Q ss_pred             ccccccccCCCCCCCCccccc
Q 010182          465 MLKLEGNNNEGEQMPTGWLTR  485 (516)
Q Consensus       465 ~l~L~~N~i~~~~~~~~~~~~  485 (516)
                      .+++..|+++|..+.+.....
T Consensus       226 ~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          226 YLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHHHHHHHTGGGBBCTTSCBC
T ss_pred             HHHHHHHhCCCcccCcccccC
Confidence            567778888887766655443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2e-21  Score=185.92  Aligned_cols=195  Identities=22%  Similarity=0.262  Sum_probs=173.0

Q ss_pred             hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCC-CCCcch-hhcCCCCccEEEeeC-CCCCCcch-hhcCCCCCc
Q 010182          206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNH-LEVIPD-SIAGLVNLEELNLAS-NLLETLPD-SIGLLDNLK  280 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~-l~~l~~-~l~~l~~L~~L~Ls~-n~l~~l~~-~l~~l~~L~  280 (516)
                      ...++++|++++|.++.++. .|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++. .|..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            34689999999999998877 78999999999999997 998865 789999999999998 99998874 788999999


Q ss_pred             EEEeeCCCCCCCCcccccCCCCc---EEeCCCC-CCCcCChhhhhcCCCCc-EEecCCCCCccccchhcCCCCCcEEEcc
Q 010182          281 ILDVSGNKLSALPDSISHCRSLV---ELDASFN-RLAYLPTNIGHELVNLQ-KLLVPLNKIRFLPTSIGEMASLRHLDAH  355 (516)
Q Consensus       281 ~L~Ls~n~l~~l~~~l~~l~~L~---~L~L~~n-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~l~~~l~~l~~L~~L~Ls  355 (516)
                      +|++++|.++.+|. +..+++|+   +|++++| .++.++...+..+++|+ .|++++|++..++......++|++|+++
T Consensus       109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred             EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence            99999999999986 88888888   9999999 99999998888899999 9999999999888766555899999999


Q ss_pred             CCC-CCCcc-hhhCCC-CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC
Q 010182          356 FNE-LHGLP-ATIGKL-TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN  405 (516)
Q Consensus       356 ~n~-l~~l~-~~l~~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n  405 (516)
                      +|. ++.++ ..+..+ ++|+.|++++|.+  ..+|..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh--HhccCceeeccCc
Confidence            995 99875 467888 9999999999954  466654  7889999999887

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=3e-21  Score=188.49  Aligned_cols=202  Identities=26%  Similarity=0.399  Sum_probs=175.0

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~  286 (516)
                      .+++.|+++++.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            789999999999998764 788999999999999999874 78999999999999999998876 578999999999999


Q ss_pred             CCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182          287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      |.++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|+++.++.. +..+++|++|++++|.+++++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            999988654 78899999999999999999988877899999999999999987654 5888999999999999999654


Q ss_pred             -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCc
Q 010182          365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDK  419 (516)
Q Consensus       365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~  419 (516)
                       .+..+++|+.|++++|.+.        +.+++|+.|+++.|.++ .+|..++.++.
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence             5788999999999999432        34678889999999887 56776666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=9.6e-22  Score=197.52  Aligned_cols=249  Identities=18%  Similarity=0.250  Sum_probs=199.3

Q ss_pred             CCccEEEeecCCCCcchHhhcCC--CCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC--cchhhcCCCCCcEEE
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRI--AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET--LPDSIGLLDNLKILD  283 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l--~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~  283 (516)
                      ..++.++++++.+.  +..+..+  ++++.|++++|.+...+..+..+++|++|++++|.++.  ++..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            45788999998877  5556666  89999999999998776667789999999999999883  777888999999999


Q ss_pred             eeCCCCC-CCCcccccCCCCcEEeCCCC-CCCc--CChhhhhcCCCCcEEecCCC-CCcc--ccchhcCCC-CCcEEEcc
Q 010182          284 VSGNKLS-ALPDSISHCRSLVELDASFN-RLAY--LPTNIGHELVNLQKLLVPLN-KIRF--LPTSIGEMA-SLRHLDAH  355 (516)
Q Consensus       284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n-~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~l~~l~-~L~~L~Ls  355 (516)
                      +++|.++ ..+..+..+++|++|++++| .++.  ++. .+..+++|++|++++| .++.  ++..+..++ +|++|+++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            9999988 45677888999999999999 6764  333 3456999999999999 8884  667788899 99999999


Q ss_pred             CC--CCCC--cchhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCCC-CCCch-hhhcCCCcccEEecccC
Q 010182          356 FN--ELHG--LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQ-IHALP-NTFGRLDKLIKLNLEEN  428 (516)
Q Consensus       356 ~n--~l~~--l~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n~-i~~lp-~~l~~l~~L~~L~L~~N  428 (516)
                      +|  .+++  ++..+..+++|+.|++++|. ++ ...+..+..+++|++|++++|. ++... ..+..+++|+.|++++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            99  5553  77788889999999999996 44 3445678899999999999995 43221 36888999999999999


Q ss_pred             CCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcc
Q 010182          429 PMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW  482 (516)
Q Consensus       429 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~  482 (516)
                       ++......+.                     ..+..+++++|++++..++...
T Consensus       283 -i~~~~~~~l~---------------------~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          283 -VPDGTLQLLK---------------------EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             -SCTTCHHHHH---------------------HHSTTSEESCCCSCCTTCSSCS
T ss_pred             -cCHHHHHHHH---------------------hhCcceEEecccCccccCCccc
Confidence             5433322111                     3466788999999988766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=4.1e-21  Score=205.80  Aligned_cols=188  Identities=29%  Similarity=0.409  Sum_probs=129.1

Q ss_pred             HHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC
Q 010182          198 VMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD  277 (516)
Q Consensus       198 ~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~  277 (516)
                      .+..++.+...+++.|+|++|.++.+|..+  +++|++|++++|.++.+|   ..+++|++|++++|.|+.+|. +..  
T Consensus        49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--  120 (571)
T 3cvr_A           49 AVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--  120 (571)
T ss_dssp             HHHHHHHHHHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred             hhhhccccccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--
Confidence            455555555568888999888888887755  377888888888888887   456788888888888888877 544  


Q ss_pred             CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCC
Q 010182          278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN  357 (516)
Q Consensus       278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n  357 (516)
                      +|++|++++|.++.+|.   .+++|+.|++++|.++.+|.    .+++|+.|++++|.++.+|. +.  ++|++|++++|
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence            78888888888887766   56778888888888877765    36677777777777777666 44  67777777777


Q ss_pred             CCCCcchhhCCCCCC-------cEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC
Q 010182          358 ELHGLPATIGKLTNL-------EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH  408 (516)
Q Consensus       358 ~l~~l~~~l~~l~~L-------~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~  408 (516)
                      .++.+|. +..  +|       +.|+|++|.+  ..+|..+..+++|+.|+|++|.++
T Consensus       191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          191 LLESLPA-VPV--RNHHSEETEIFFRCRENRI--THIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCSSCCC-CC----------CCEEEECCSSCC--CCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CCCchhh-HHH--hhhcccccceEEecCCCcc--eecCHHHhcCCCCCEEEeeCCcCC
Confidence            7776665 332  44       5555555522  244444444555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=9.5e-22  Score=200.18  Aligned_cols=226  Identities=21%  Similarity=0.253  Sum_probs=127.9

Q ss_pred             CCccEEEeecCCCCcch-----HhhcCCC-CCcEEEeecCCCCCc-chhhcCC-----CCccEEEeeCCCCCCcch----
Q 010182          208 KSLEQVDLSSRGLRFLP-----EAFGRIA-GLRLMSLSNNHLEVI-PDSIAGL-----VNLEELNLASNLLETLPD----  271 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~Ls~n~l~~l-~~~l~~l-----~~L~~L~Ls~n~l~~l~~----  271 (516)
                      .+|++|++++|.++..+     ..+..++ +|++|++++|.++.. +..+..+     ++|++|++++|.++..+.    
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            44677777777666443     4566666 677777777766643 3334332     667777777776664322    


Q ss_pred             -hhcCC-CCCcEEEeeCCCCCCCCc-----cccc-CCCCcEEeCCCCCCCcCChhh----hhcCC-CCcEEecCCCCCcc
Q 010182          272 -SIGLL-DNLKILDVSGNKLSALPD-----SISH-CRSLVELDASFNRLAYLPTNI----GHELV-NLQKLLVPLNKIRF  338 (516)
Q Consensus       272 -~l~~l-~~L~~L~Ls~n~l~~l~~-----~l~~-l~~L~~L~L~~n~l~~l~~~~----~~~l~-~L~~L~L~~n~l~~  338 (516)
                       .+..+ ++|++|++++|.++..+.     .+.. +++|++|++++|.++......    +..++ +|++|++++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence             23344 667777777776664422     1223 346777777777666322211    11233 67777777776653


Q ss_pred             cc-----chhcCC-CCCcEEEccCCCCCC-----cchhhCC-CCCCcEEEcccCCCCCCCc---chhhcCCCCccEEecc
Q 010182          339 LP-----TSIGEM-ASLRHLDAHFNELHG-----LPATIGK-LTNLEILNVSSNFTDMKEL---PETFGELTNLKELDLS  403 (516)
Q Consensus       339 l~-----~~l~~l-~~L~~L~Ls~n~l~~-----l~~~l~~-l~~L~~L~L~~n~~~~~~l---~~~l~~l~~L~~L~L~  403 (516)
                      ..     ..+..+ ++|++|++++|.+++     ++..+.. .++|++|+|++|.++..+.   ...+..+++|+.|+|+
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            32     233344 467777777776666     4444544 3467777777775554322   3344556667777777


Q ss_pred             CCCCCC--------chhhhcCCCcccEEecccCCCCCC
Q 010182          404 NNQIHA--------LPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       404 ~n~i~~--------lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      +|.+..        ++..+..+++|+.|++++|.+...
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            776332        233455666677777777766544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=6e-21  Score=189.98  Aligned_cols=199  Identities=19%  Similarity=0.177  Sum_probs=166.7

Q ss_pred             hCCCccEEEeecCCCC-cchHhh--cCCCCCcEEEeecCCCCCc-c----hhhcCCCCccEEEeeCCCCCCcc-hhhcCC
Q 010182          206 AGKSLEQVDLSSRGLR-FLPEAF--GRIAGLRLMSLSNNHLEVI-P----DSIAGLVNLEELNLASNLLETLP-DSIGLL  276 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~Ls~n~l~~l-~----~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l  276 (516)
                      ..++|++|++++|.+. ..|..+  ..+++|++|++++|.++.. +    ..+..+++|++|++++|.++.++ ..++.+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            3467999999999998 455566  8899999999999999852 2    34567999999999999999776 578899


Q ss_pred             CCCcEEEeeCCCCCC---CC--cccccCCCCcEEeCCCCCCCcCChh---hhhcCCCCcEEecCCCCCccc-cchhcCC-
Q 010182          277 DNLKILDVSGNKLSA---LP--DSISHCRSLVELDASFNRLAYLPTN---IGHELVNLQKLLVPLNKIRFL-PTSIGEM-  346 (516)
Q Consensus       277 ~~L~~L~Ls~n~l~~---l~--~~l~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~l-~~~l~~l-  346 (516)
                      ++|++|++++|++..   ++  ..+..+++|++|++++|.++.++..   .+..+++|++|++++|.+... |..+..+ 
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999999763   32  3346789999999999999876654   445689999999999999976 7777666 


Q ss_pred             --CCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCC
Q 010182          347 --ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA  409 (516)
Q Consensus       347 --~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~  409 (516)
                        ++|++|++++|.++.+|..+.  ++|+.|+|++|.+.  ++|. +..+++|+.|+|++|+|++
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~--~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN--RAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC--SCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC--CCch-hhhCCCccEEECcCCCCCC
Confidence              699999999999999988774  79999999999654  5544 6788999999999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=1.1e-20  Score=202.54  Aligned_cols=185  Identities=30%  Similarity=0.412  Sum_probs=162.6

Q ss_pred             CCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCC
Q 010182          231 AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFN  310 (516)
Q Consensus       231 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n  310 (516)
                      .+|+.|++++|.++.+|..+  +++|++|+|++|.|+.+|   ..+++|++|++++|.|+.+|. +..  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            48999999999999998866  379999999999999998   468999999999999999988 655  9999999999


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchh
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET  390 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~  390 (516)
                      .++.+|.    .+++|+.|++++|.++.+|.   .+++|++|++++|.++++|. +.  ++|+.|+|++|.+  ..+|. 
T Consensus       131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L--~~lp~-  197 (571)
T 3cvr_A          131 QLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL--ESLPA-  197 (571)
T ss_dssp             CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC--SSCCC-
T ss_pred             cCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC--Cchhh-
Confidence            9999887    48999999999999999887   57899999999999999988 65  8999999999955  47776 


Q ss_pred             hcCCCCc-------cEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHH
Q 010182          391 FGELTNL-------KELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVV  438 (516)
Q Consensus       391 l~~l~~L-------~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~  438 (516)
                      +..  +|       +.|+|++|+|+.+|..+..+++|+.|+|++|++++..+..+
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            544  67       99999999999999888889999999999999986544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=7.7e-22  Score=200.87  Aligned_cols=253  Identities=19%  Similarity=0.186  Sum_probs=193.1

Q ss_pred             EEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcc-----hhhcCCC-CccEEEeeCCCCCCc-chhhcCC-----CC
Q 010182          212 QVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIP-----DSIAGLV-NLEELNLASNLLETL-PDSIGLL-----DN  278 (516)
Q Consensus       212 ~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~-----~~l~~l~-~L~~L~Ls~n~l~~l-~~~l~~l-----~~  278 (516)
                      .++++.+.++.. |..+...++|++|++++|.++..+     ..+..++ +|++|+|++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            467889999855 445555566999999999999664     6788898 999999999999855 3344443     99


Q ss_pred             CcEEEeeCCCCCCCCc-----ccccC-CCCcEEeCCCCCCCcCChhhhh----c-CCCCcEEecCCCCCc-----cccch
Q 010182          279 LKILDVSGNKLSALPD-----SISHC-RSLVELDASFNRLAYLPTNIGH----E-LVNLQKLLVPLNKIR-----FLPTS  342 (516)
Q Consensus       279 L~~L~Ls~n~l~~l~~-----~l~~l-~~L~~L~L~~n~l~~l~~~~~~----~-l~~L~~L~L~~n~l~-----~l~~~  342 (516)
                      |++|++++|.++..+.     .+..+ ++|++|++++|.++..+...+.    . ..+|++|++++|.++     .++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999985532     25555 8999999999999887765432    2 369999999999998     45556


Q ss_pred             hcCCC-CCcEEEccCCCCCCcc-----hhhCCC-CCCcEEEcccCCCCCCC---cchhhcC-CCCccEEeccCCCCCCch
Q 010182          343 IGEMA-SLRHLDAHFNELHGLP-----ATIGKL-TNLEILNVSSNFTDMKE---LPETFGE-LTNLKELDLSNNQIHALP  411 (516)
Q Consensus       343 l~~l~-~L~~L~Ls~n~l~~l~-----~~l~~l-~~L~~L~L~~n~~~~~~---l~~~l~~-l~~L~~L~L~~n~i~~lp  411 (516)
                      +..+. +|++|++++|.+++..     ..+..+ ++|++|+|++|.++..+   ++..+.. .++|++|+|++|.|+..+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            66665 9999999999998732     355666 59999999999665332   4555655 459999999999999753


Q ss_pred             -----hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182          412 -----NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE  476 (516)
Q Consensus       412 -----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~  476 (516)
                           ..+..+++|+.|+|++|.+.......+..            ....+...+.++.+++++|++.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~------------l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA------------LGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH------------HHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHH------------HHHHhccCCceEEEecCCCcCCCc
Confidence                 44577899999999999987776654321            112223456788899999998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.4e-22  Score=200.04  Aligned_cols=250  Identities=18%  Similarity=0.156  Sum_probs=201.1

Q ss_pred             CCCcEEEeecCCCCCcchhhcCC--CCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC--CCcccccCCCCcEEe
Q 010182          231 AGLRLMSLSNNHLEVIPDSIAGL--VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA--LPDSISHCRSLVELD  306 (516)
Q Consensus       231 ~~L~~L~Ls~n~l~~l~~~l~~l--~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~  306 (516)
                      ..++.++++++.+.  +..+..+  ++++.|++++|.++..+..+..+++|++|++++|.++.  ++..+..+++|++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            45889999999887  4556666  89999999999999777667789999999999999873  677788899999999


Q ss_pred             CCCCCCCcCChhhhhcCCCCcEEecCCC-CCc--cccchhcCCCCCcEEEccCC-CCCC--cchhhCCCC-CCcEEEccc
Q 010182          307 ASFNRLAYLPTNIGHELVNLQKLLVPLN-KIR--FLPTSIGEMASLRHLDAHFN-ELHG--LPATIGKLT-NLEILNVSS  379 (516)
Q Consensus       307 L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~--~l~~~l~~l~~L~~L~Ls~n-~l~~--l~~~l~~l~-~L~~L~L~~  379 (516)
                      +++|.++......+..+++|++|++++| .++  .++..+..+++|++|++++| .+++  ++..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            9999987544444556999999999999 687  46777889999999999999 9986  677788899 999999999


Q ss_pred             C--CCCCCCcchhhcCCCCccEEeccCCC-CC-CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhh
Q 010182          380 N--FTDMKELPETFGELTNLKELDLSNNQ-IH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLD  455 (516)
Q Consensus       380 n--~~~~~~l~~~l~~l~~L~~L~L~~n~-i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~  455 (516)
                      |  .+....++..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|.  ......                +.
T Consensus       205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~----------------~~  266 (336)
T 2ast_B          205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPET----------------LL  266 (336)
T ss_dssp             CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGG----------------GG
T ss_pred             CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHH----------------HH
Confidence            9  44446677888899999999999999 66 456788999999999999996  221111                11


Q ss_pred             HhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182          456 ILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       456 ~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~  503 (516)
                      .+...++++.+++++| ++.......  ...+..|++++|++++..+.
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~~~~~~l--~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPDGTLQLL--KEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCTTCHHHH--HHHSTTSEESCCCSCCTTCS
T ss_pred             HHhcCCCCCEEeccCc-cCHHHHHHH--HhhCcceEEecccCccccCC
Confidence            1234678899999988 554333222  23478888999999998876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.7e-19  Score=173.92  Aligned_cols=176  Identities=31%  Similarity=0.466  Sum_probs=110.6

Q ss_pred             CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCC
Q 010182          232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFN  310 (516)
Q Consensus       232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n  310 (516)
                      +.+.++++++.++.+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.++.                   
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------   73 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-------------------   73 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-------------------
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-------------------
Confidence            34556666666665555443  355555555555554433 34555555555555555554                   


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCcc
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELP  388 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~  388 (516)
                          ++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|+|++|.+.  .++
T Consensus        74 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~  147 (251)
T 3m19_A           74 ----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIP  147 (251)
T ss_dssp             ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCC
T ss_pred             ----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccC
Confidence                444333344444455555444444432 34556666666666666666544 3566777888888887443  444


Q ss_pred             h-hhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182          389 E-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       389 ~-~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      . .+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++...+
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            4 5778889999999999999886 57888999999999999998653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=6.1e-20  Score=181.13  Aligned_cols=188  Identities=23%  Similarity=0.293  Sum_probs=128.8

Q ss_pred             EEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCC
Q 010182          213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL  292 (516)
Q Consensus       213 L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l  292 (516)
                      +.+..+.+..+.. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus        29 ~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             HHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred             HHhcCCCcccccc-hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence            3344555554322 345778888888888888774 47778888888888888888776 77888888888888888876


Q ss_pred             CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCC
Q 010182          293 PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNL  372 (516)
Q Consensus       293 ~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L  372 (516)
                      + .+..+++|++|++++|.++.++.  +..+++|+.|++++|.+..+ ..+..+++|++|++++|.+++++. +..+++|
T Consensus       106 ~-~l~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L  180 (291)
T 1h6t_A          106 S-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL  180 (291)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             h-hhccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence            4 37778888888888888777632  33467777777777777666 456666667777777666666544 6666666


Q ss_pred             cEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182          373 EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       373 ~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      +.|++++|.+  ..++ .+..+++|+.|++++|+++..|
T Consensus       181 ~~L~L~~N~i--~~l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          181 QNLYLSKNHI--SDLR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             CEEECCSSCC--CBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             CEEECCCCcC--CCCh-hhccCCCCCEEECcCCcccCCc
Confidence            6666666633  3343 3556666666666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1.4e-20  Score=185.76  Aligned_cols=174  Identities=23%  Similarity=0.324  Sum_probs=95.9

Q ss_pred             CCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEec
Q 010182          252 GLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV  331 (516)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  331 (516)
                      .+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++.  +..+++|+.|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence            44555566666665555532 5555566666666665555544 5555566666666665555443  234555666666


Q ss_pred             CCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182          332 PLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       332 ~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      ++|.+..+ ..+..+++|++|++++|.++++ ..+..+++|+.|++++|.+  ..++. +..+++|+.|++++|.|+.++
T Consensus       120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~L~~N~i~~l~  194 (291)
T 1h6t_A          120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLYLSKNHISDLR  194 (291)
T ss_dssp             TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc--ccchh-hcCCCccCEEECCCCcCCCCh
Confidence            66655554 3455555566666666655555 3455555566666665533  23332 555556666666666655554


Q ss_pred             hhhcCCCcccEEecccCCCCCCCH
Q 010182          412 NTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       412 ~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                       .+..+++|+.|++++|++...+.
T Consensus       195 -~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          195 -ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             -GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             -hhccCCCCCEEECcCCcccCCcc
Confidence             25555566666666665554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=1.7e-19  Score=173.78  Aligned_cols=173  Identities=25%  Similarity=0.401  Sum_probs=139.1

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls  285 (516)
                      ...++++++++.++.+|..+.  ++|+.|++++|.+..+ +..|.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            457789999999999998665  7899999999999987 4579999999999999999998765 57889999999999


Q ss_pred             CCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182          286 GNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       286 ~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      +|.++.++ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999876 456788899999999999888887776667778888887777776655 4666777777777777777654


Q ss_pred             h-hhCCCCCCcEEEcccCCC
Q 010182          364 A-TIGKLTNLEILNVSSNFT  382 (516)
Q Consensus       364 ~-~l~~l~~L~~L~L~~n~~  382 (516)
                      . .+..+++|+.|++++|.+
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCB
T ss_pred             HHHHhCCCCCCEEEeeCCce
Confidence            3 556666666666666643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=5.1e-20  Score=199.21  Aligned_cols=174  Identities=24%  Similarity=0.319  Sum_probs=103.3

Q ss_pred             cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeC
Q 010182          228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDA  307 (516)
Q Consensus       228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  307 (516)
                      ..+++|+.|++++|.+..++ .+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.+..++ .+..+++|+.|+|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence            44556666666666666554 35566666666666666666554 556666666666666666553 4556666666666


Q ss_pred             CCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCc
Q 010182          308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL  387 (516)
Q Consensus       308 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l  387 (516)
                      ++|.++.++.  +..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+++++. +..+++|+.|+|++|.+  ..+
T Consensus       117 s~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i--~~l  190 (605)
T 1m9s_A          117 EHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI--SDL  190 (605)
T ss_dssp             TTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--CBC
T ss_pred             cCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC--CCC
Confidence            6666665532  23466666666666666655 455566666666666666666544 55666666666666633  233


Q ss_pred             chhhcCCCCccEEeccCCCCCCch
Q 010182          388 PETFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       388 ~~~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      + .+..+++|+.|+|++|.++..|
T Consensus       191 ~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          191 R-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             G-GGTTCTTCSEEECCSEEEECCC
T ss_pred             h-HHccCCCCCEEEccCCcCcCCc
Confidence            2 4556666666666666655443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=2.9e-19  Score=180.95  Aligned_cols=215  Identities=26%  Similarity=0.286  Sum_probs=125.8

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCC-Ccc-hhhcCCCCccE-EEeeCCCCCCcc-hhhcCCCCCcEE
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLE-VIP-DSIAGLVNLEE-LNLASNLLETLP-DSIGLLDNLKIL  282 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~-~l~-~~l~~l~~L~~-L~Ls~n~l~~l~-~~l~~l~~L~~L  282 (516)
                      .++++|+|++|.|+.+|. +|..+++|++|+|++|.+. .++ ..|.++++|++ +.+.+|+|+.++ ..|..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            456666666666666654 4666666666666666654 343 34566666554 445556666653 355666666666


Q ss_pred             EeeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCC-CCcEEecCCCCCccccchhcCCCCCcEEEcc-CCC
Q 010182          283 DVSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELV-NLQKLLVPLNKIRFLPTSIGEMASLRHLDAH-FNE  358 (516)
Q Consensus       283 ~Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls-~n~  358 (516)
                      ++++|.++.++. .+....++..|++.+ +.+..++...+..+. .++.|++++|+|+.++..+....+|++|+++ +|.
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~  189 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN  189 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence            666666665543 233445555666543 456666555444443 4666677777766666655555666666665 356


Q ss_pred             CCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC-CCCCchhhhcCCCcccEEeccc
Q 010182          359 LHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN-QIHALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       359 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~  427 (516)
                      ++.+|. .+..+++|+.|++++|.  +..+|.  ..+.+|+.|.+.++ .++.+| .+..+++|+.+++.+
T Consensus       190 l~~i~~~~f~~l~~L~~LdLs~N~--l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          190 LEELPNDVFHGASGPVILDISRTR--IHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCTTTTTTEECCSEEECTTSC--CCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             ccCCCHHHhccCcccchhhcCCCC--cCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence            666654 45666667777777663  344443  23445555555444 455665 356666677666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.2e-18  Score=176.50  Aligned_cols=219  Identities=20%  Similarity=0.195  Sum_probs=175.7

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCC-cch-hhcCCCCCcE-EEeeC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLET-LPD-SIGLLDNLKI-LDVSG  286 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~-l~~-~l~~l~~L~~-L~Ls~  286 (516)
                      +++++++++++.+|..+  .++++.|+|++|+|+.+|. +|.++++|++|+|++|.+.. ++. .|.+++++.. +.+++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            57899999999999866  3789999999999999975 68999999999999999864 554 6788888775 66778


Q ss_pred             CCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCC-CCCcEEEccCCCCCCc
Q 010182          287 NKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEM-ASLRHLDAHFNELHGL  362 (516)
Q Consensus       287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l-~~L~~L~Ls~n~l~~l  362 (516)
                      |+++.+ +..+..+++|++|++++|.++.++...+....++..|++.+ +.+..++. .+..+ ..++.|++++|+++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            999988 46688899999999999999999887776677888999865 57887765 34444 4689999999999999


Q ss_pred             chhhCCCCCCcEEEcccCCCCCCCcch-hhcCCCCccEEeccCCCCCCchh-hhcCCCcccEEecccCCCCCCC
Q 010182          363 PATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       363 ~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      +.......+|+.|++.+|. .+..+|. .|..+++|+.|+|++|+|+.+|. .+.++++|+.+++  +.++..|
T Consensus       170 ~~~~f~~~~L~~l~l~~~n-~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP  240 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP  240 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCT-TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCC
T ss_pred             ChhhccccchhHHhhccCC-cccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCC
Confidence            8877777899999998532 3456664 67899999999999999999984 4544444444333  3455554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=5.6e-19  Score=191.06  Aligned_cols=194  Identities=21%  Similarity=0.277  Sum_probs=168.0

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL  312 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l  312 (516)
                      +..+.+..+.+..+.. +..+++|+.|++++|.|..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+
T Consensus        23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred             HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence            4445566666665532 567889999999999999987 58899999999999999999876 88999999999999999


Q ss_pred             CcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhc
Q 010182          313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFG  392 (516)
Q Consensus       313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~  392 (516)
                      +.++.  +..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|.+  ..++. +.
T Consensus       100 ~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l--~~~~~-l~  172 (605)
T 1m9s_A          100 KDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI--SDIVP-LA  172 (605)
T ss_dssp             CCCTT--STTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC--CCCGG-GT
T ss_pred             CCChh--hccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC--CCchh-hc
Confidence            98763  44699999999999999987 4688999999999999999998 6788999999999999965  45544 89


Q ss_pred             CCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHH
Q 010182          393 ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEV  437 (516)
Q Consensus       393 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  437 (516)
                      .+++|+.|+|++|+|+.++ .+..+++|+.|+|++|++...+...
T Consensus       173 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          173 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccc
Confidence            9999999999999999986 6899999999999999998776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=5.3e-19  Score=171.75  Aligned_cols=163  Identities=23%  Similarity=0.299  Sum_probs=93.2

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK  288 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~  288 (516)
                      .+..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.|+.++. +..+++|++|++++|.
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence            3445566666666665 4566677777777777777665 56667777777777777776665 6667777777777777


Q ss_pred             CCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCC
Q 010182          289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK  368 (516)
Q Consensus       289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~  368 (516)
                      ++.++....  ++|++|++++|.++.++.  +..+++|+.|++++|+++.++ .+..+++|++|++++|.++++ ..+..
T Consensus        97 l~~l~~~~~--~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~  170 (263)
T 1xeu_A           97 LKNLNGIPS--ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTR  170 (263)
T ss_dssp             CSCCTTCCC--SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred             cCCcCcccc--CcccEEEccCCccCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence            666643222  566666666666655432  223455555555555544443 344444444444444444444 33334


Q ss_pred             CCCCcEEEcccC
Q 010182          369 LTNLEILNVSSN  380 (516)
Q Consensus       369 l~~L~~L~L~~n  380 (516)
                      +++|+.|++++|
T Consensus       171 l~~L~~L~l~~N  182 (263)
T 1xeu_A          171 LKKVNWIDLTGQ  182 (263)
T ss_dssp             CCCCCEEEEEEE
T ss_pred             CCCCCEEeCCCC
Confidence            444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=9.1e-19  Score=170.09  Aligned_cols=171  Identities=23%  Similarity=0.310  Sum_probs=120.2

Q ss_pred             CCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCC
Q 010182          230 IAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASF  309 (516)
Q Consensus       230 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~  309 (516)
                      +.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence            445666777888888776 5677788888888888888776 57778888888888888887765 77788888888888


Q ss_pred             CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcch
Q 010182          310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE  389 (516)
Q Consensus       310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~  389 (516)
                      |.++.++....   ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.+.  ++ .
T Consensus        95 N~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~--~~-~  166 (263)
T 1xeu_A           95 NRLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT--NT-G  166 (263)
T ss_dssp             SCCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC--BC-T
T ss_pred             CccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc--ch-H
Confidence            88777665332   67777777777777663 4666677777777777776664 4666666777777766443  22 4


Q ss_pred             hhcCCCCccEEeccCCCCCCch
Q 010182          390 TFGELTNLKELDLSNNQIHALP  411 (516)
Q Consensus       390 ~l~~l~~L~~L~L~~n~i~~lp  411 (516)
                      .+..+++|+.|++++|.++..|
T Consensus       167 ~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          167 GLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TSTTCCCCCEEEEEEEEEECCC
T ss_pred             HhccCCCCCEEeCCCCcccCCc
Confidence            5566666666666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=6e-18  Score=156.82  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEe
Q 010182          228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELD  306 (516)
Q Consensus       228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~  306 (516)
                      ..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            34566667777777776665 5666677777777777666554 46666777777777776664 455566666677776


Q ss_pred             CCCCCCCcCChhhhhcCCCCcEEecCCCC-CccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCC
Q 010182          307 ASFNRLAYLPTNIGHELVNLQKLLVPLNK-IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNF  381 (516)
Q Consensus       307 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~  381 (516)
                      +++|.++......+..+++|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            66666654333333345555555555554 55443 4555555555555555555544 44455555555555553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=8e-18  Score=157.19  Aligned_cols=145  Identities=28%  Similarity=0.438  Sum_probs=76.0

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~  288 (516)
                      +.+++++++++.+|..+  .++|++|++++|.++.++. .+..+++|++|++++|.++.++. .|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            35566666666555433  3456666666666665533 34556666666666666665544 34555566666666665


Q ss_pred             CCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCC
Q 010182          289 LSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFN  357 (516)
Q Consensus       289 l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n  357 (516)
                      ++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            5555432 34555555555555555555544444444444444444444444332 333444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=5.7e-18  Score=158.20  Aligned_cols=176  Identities=25%  Similarity=0.358  Sum_probs=150.2

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCCC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFNR  311 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~  311 (516)
                      +.++++++.++.+|..+  .++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            56888899999888655  4589999999999998876 578899999999999999988654 6789999999999999


Q ss_pred             CCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCcch
Q 010182          312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPE  389 (516)
Q Consensus       312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~  389 (516)
                      ++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.+++++. .+..+++|+.|++++|.+       
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-------  160 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-------  160 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------
Confidence            9999888777899999999999999988764 6889999999999999999765 478899999999999943       


Q ss_pred             hhcCCCCccEEeccCCCCC-CchhhhcCCCc
Q 010182          390 TFGELTNLKELDLSNNQIH-ALPNTFGRLDK  419 (516)
Q Consensus       390 ~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~  419 (516)
                       .+.+++|+.|+++.|+++ .+|..++.++.
T Consensus       161 -~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 -DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence             245678999999999888 67877776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=4.4e-19  Score=191.89  Aligned_cols=41  Identities=15%  Similarity=0.039  Sum_probs=31.5

Q ss_pred             HhhhcccccccccCCCCCCCCcc-ccccccEEEccCCccccc
Q 010182          460 EERRSMLKLEGNNNEGEQMPTGW-LTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       460 ~~~l~~l~L~~N~i~~~~~~~~~-~~~~l~~l~l~~N~ls~~  500 (516)
                      .++++.|++++|.+++..++.++ ..++++.|++++|++++.
T Consensus       487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            46788899999988766555443 467899999999998875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=3.4e-19  Score=192.75  Aligned_cols=118  Identities=9%  Similarity=-0.064  Sum_probs=64.7

Q ss_pred             CCCCcEEEcc----CCCCCC------cchhhCCCCCCcEEEcccCC--CCCCCcchhhcCCCCccEEeccCCCCCC--ch
Q 010182          346 MASLRHLDAH----FNELHG------LPATIGKLTNLEILNVSSNF--TDMKELPETFGELTNLKELDLSNNQIHA--LP  411 (516)
Q Consensus       346 l~~L~~L~Ls----~n~l~~------l~~~l~~l~~L~~L~L~~n~--~~~~~l~~~l~~l~~L~~L~L~~n~i~~--lp  411 (516)
                      +++|++|+++    .|.+++      ++..+..+++|+.|+++.|.  +....+......+++|++|++++|++++  ++
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            4455555554    334443      22224445566666664321  2222222222346667777777777764  34


Q ss_pred             hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCc
Q 010182          412 NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTG  481 (516)
Q Consensus       412 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~  481 (516)
                      ..+..+++|++|+|++|++++....                  ......++++.++|++|++++......
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~~~~~~------------------~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFSERAIA------------------AAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCBHHHHH------------------HHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHhcCcccCeeeccCCCCcHHHHH------------------HHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            5556677777777777775421111                  011245678889999999887755444

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=2.8e-17  Score=152.33  Aligned_cols=149  Identities=20%  Similarity=0.280  Sum_probs=131.6

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~Ls~  286 (516)
                      +++++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..++.+++|++|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            67999999999999988 6899999999999999887764 78899999999999999995 567889999999999999


Q ss_pred             CCCCC-CCcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182          287 NKLSA-LPDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       287 n~l~~-l~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      |.++. .+..+..+++|++|++++|. ++.++  .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.+
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            99985 56778999999999999998 88886  3556999999999999999886 78899999999999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.8e-17  Score=168.44  Aligned_cols=173  Identities=27%  Similarity=0.314  Sum_probs=104.6

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhc-CCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIG-LLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFN  310 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~-~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n  310 (516)
                      +.++++++.++.+|..+.  ..++.|+|++|.|+.++. .+. .+++|++|+|++|.|+.++ ..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            456666666666665443  346666666666665544 233 5666666666666666553 33555555666666665


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCCCCCCCcch
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMKELPE  389 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~  389 (516)
                      .++.++...+..++                       +|++|+|++|.++.+ +..+..+++|+.|+|++|.+  ..+|.
T Consensus        99 ~l~~~~~~~~~~l~-----------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l--~~l~~  153 (361)
T 2xot_A           99 HLHTLDEFLFSDLQ-----------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI--SRFPV  153 (361)
T ss_dssp             CCCEECTTTTTTCT-----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCG
T ss_pred             cCCcCCHHHhCCCc-----------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC--CeeCH
Confidence            55555544444444                       455555555555443 33455555555555555532  33333


Q ss_pred             hh----cCCCCccEEeccCCCCCCch-hhhcCCCc--ccEEecccCCCCCC
Q 010182          390 TF----GELTNLKELDLSNNQIHALP-NTFGRLDK--LIKLNLEENPMVIP  433 (516)
Q Consensus       390 ~l----~~l~~L~~L~L~~n~i~~lp-~~l~~l~~--L~~L~L~~N~l~~~  433 (516)
                      .+    ..+++|+.|+|++|+|+.+| ..+..++.  |+.|+|++|++...
T Consensus       154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            32    46788889999999999887 67777877  48899999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=8.9e-17  Score=152.64  Aligned_cols=144  Identities=30%  Similarity=0.423  Sum_probs=71.5

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRL  312 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l  312 (516)
                      .++++++.++.+|..+.  ++|++|+|++|.|+.+ +..|..+++|++|+|++|.++.++. .+..+++|+.|++++|.+
T Consensus        23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            34444444444443332  4455555555555444 2344445555555555555554432 234455555555555555


Q ss_pred             CcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccC
Q 010182          313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN  380 (516)
Q Consensus       313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n  380 (516)
                      +.++...+..+++|+.|++++|++..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            5555444444555555555555555555555555555555555555555432 3444555555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.1e-20  Score=198.73  Aligned_cols=181  Identities=22%  Similarity=0.256  Sum_probs=116.2

Q ss_pred             cCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC--------------CCCCCcccccCCCCcEEe-CCCCCCCcC
Q 010182          251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK--------------LSALPDSISHCRSLVELD-ASFNRLAYL  315 (516)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~--------------l~~l~~~l~~l~~L~~L~-L~~n~l~~l  315 (516)
                      ..+++|+.|+|++|.++.+|..++.+++|+.|++++|.              ...+|..++.+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34555666666666666666666666666666654442              112344555666666666 454443332


Q ss_pred             Chhhhh-------cCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcc
Q 010182          316 PTNIGH-------ELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP  388 (516)
Q Consensus       316 ~~~~~~-------~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~  388 (516)
                      +...+.       ....|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++|.+  .++|
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l--~~lp  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC--CCCG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC--CCCc
Confidence            221100       12257777777777777765 7777777777777777777777777777777777777744  3466


Q ss_pred             hhhcCCCCccEEeccCCCCCCc--hhhhcCCCcccEEecccCCCCCCCH
Q 010182          389 ETFGELTNLKELDLSNNQIHAL--PNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       389 ~~l~~l~~L~~L~L~~n~i~~l--p~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                       .++.+++|+.|+|++|+|+.+  |..+..+++|+.|+|++|+++..+.
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence             677777777777777777776  6777777777777777777766543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=7.9e-17  Score=152.04  Aligned_cols=151  Identities=24%  Similarity=0.404  Sum_probs=116.8

Q ss_pred             cEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCC
Q 010182          280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNE  358 (516)
Q Consensus       280 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~  358 (516)
                      +.++++++.++.+|..+.  ++|+.|++++|.++.++...+..+++|+.|++++|.+..+ +..+..+++|++|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456666666666665544  5677777777777777666666677777777777777765 5677788888888888888


Q ss_pred             CCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182          359 LHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       359 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ++.+|. .+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++...
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            888765 4577888999999998655 233567888999999999999999887 5688999999999999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.5e-17  Score=167.37  Aligned_cols=172  Identities=27%  Similarity=0.328  Sum_probs=146.5

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhc-CCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIA-GLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~-~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~  286 (516)
                      -+.+++++++++.+|..+.  ..++.|+|++|.++.++. .+. .+++|++|+|++|.|+.++. .|..+++|++|+|++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3689999999999997554  569999999999998855 465 89999999999999998874 689999999999999


Q ss_pred             CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchh----cCCCCCcEEEccCCCCCC
Q 010182          287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI----GEMASLRHLDAHFNELHG  361 (516)
Q Consensus       287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~Ls~n~l~~  361 (516)
                      |.|+.++. .+..+++|+.|++++|.++.++...+..+++|+.|++++|.+..+|..+    ..+++|+.|+|++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99998854 5788999999999999999998887888999999999999999888765    568899999999999998


Q ss_pred             cch-hhCCCCC--CcEEEcccCCCC
Q 010182          362 LPA-TIGKLTN--LEILNVSSNFTD  383 (516)
Q Consensus       362 l~~-~l~~l~~--L~~L~L~~n~~~  383 (516)
                      ++. .+..++.  ++.|+|++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            763 5666665  478899888543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=5.4e-17  Score=153.19  Aligned_cols=145  Identities=26%  Similarity=0.407  Sum_probs=73.7

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRL  312 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l  312 (516)
                      .++++++.++.+|..+.  ++|++|++++|.|+.++. .|..+++|++|+|++|.++.+ +..+..+++|++|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            34444444444443332  344444444444444433 344444555555555544433 34444455555555555555


Q ss_pred             CcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCC
Q 010182          313 AYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNF  381 (516)
Q Consensus       313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~  381 (516)
                      +.++...+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            555554444455555555555555544 2345555666666666666666443 45556666666666663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.2e-16  Score=151.67  Aligned_cols=153  Identities=27%  Similarity=0.386  Sum_probs=113.9

Q ss_pred             CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccC
Q 010182          278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHF  356 (516)
Q Consensus       278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~  356 (516)
                      ..+.++.+++.++.+|..+.  ++|+.|++++|.++.++...+..+++|+.|++++|.+..++. .+..+++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34556666666666665443  566666666666666655555556677777777777766654 346777888888888


Q ss_pred             CCCCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182          357 NELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       357 n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      |.++.++. .+..+++|+.|+|++|.+  ..+|..+..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|++....
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l--~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC--CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcc--cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            88887654 467888888999988854  477888888999999999999999887 67889999999999999998553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=150.53  Aligned_cols=151  Identities=27%  Similarity=0.340  Sum_probs=111.6

Q ss_pred             cEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCC
Q 010182          280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFN  357 (516)
Q Consensus       280 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n  357 (516)
                      +.+++++|.++.+|..+.  ..+++|++++|.++.++ ...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            456666666666655443  34466666666666653 3444557777777777777776654 5777788888888888


Q ss_pred             CCCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCC
Q 010182          358 ELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       358 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      .++.++. .+..+++|++|+|++|.+. ...|..+..+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|++...
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            8888644 5788888899999888654 23366788899999999999999988 68899999999999999999754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=150.37  Aligned_cols=144  Identities=25%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcc--hhhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP--DSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNR  311 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~  311 (516)
                      .+++++|.++.+|..+.  ..+++|++++|.|+.++  ..|..+++|++|++++|.|+.++. .+..+++|++|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            45555555555544332  23445555555555442  124455555555555555554432 44555555555555555


Q ss_pred             CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccC
Q 010182          312 LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSN  380 (516)
Q Consensus       312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n  380 (516)
                      ++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.++++ |..+..+++|+.|++++|
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            5555544444455555555555554443 23344445555555555555543 334444444555554444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.1e-18  Score=188.75  Aligned_cols=174  Identities=14%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             CCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCC--cchhhCCCCCCcEEEccc---------CCCCCCCcch
Q 010182          323 LVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSS---------NFTDMKELPE  389 (516)
Q Consensus       323 l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~---------n~~~~~~l~~  389 (516)
                      +++|+.|++++|.++.  +...+..+++|++|++++| ++.  ++.....+++|+.|++.+         +.++...+..
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~  366 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS  366 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence            4556666666555442  2222345556666666655 222  222223456666666632         2222222222


Q ss_pred             hhcCCCCccEEeccCCCCCCch-hhh-cCCCcccEEecc--c----CCCCCCCHHHHhchhHHHHHH------------H
Q 010182          390 TFGELTNLKELDLSNNQIHALP-NTF-GRLDKLIKLNLE--E----NPMVIPPVEVVKEGVGAVKTF------------M  449 (516)
Q Consensus       390 ~l~~l~~L~~L~L~~n~i~~lp-~~l-~~l~~L~~L~L~--~----N~l~~~~~~~~~~~~~~~~~~------------~  449 (516)
                      ....+++|+.|.+..|.++... ..+ ..+++|+.|+++  +    |.++..+...   ++..+...            +
T Consensus       367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~---~~~~l~~~~~~L~~L~L~~~l  443 (594)
T 2p1m_B          367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI---GFGAIVEHCKDLRRLSLSGLL  443 (594)
T ss_dssp             HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH---HHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh---HHHHHHhhCCCccEEeecCcc
Confidence            2234677777777777776432 333 357888888888  4    5565443211   11111000            0


Q ss_pred             hhhhhhHhHH-HhhhcccccccccCCCCCCCCc-cccccccEEEccCCccccc
Q 010182          450 AKRWLDILLE-EERRSMLKLEGNNNEGEQMPTG-WLTRSTSWLKTVGENVSGI  500 (516)
Q Consensus       450 ~~~~l~~~~~-~~~l~~l~L~~N~i~~~~~~~~-~~~~~l~~l~l~~N~ls~~  500 (516)
                      .+.....+.. .++++.++|++|.+++..+... ...++|+.|++++|.+++.
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            0111112222 5678889999998877655544 3467899999999988643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.7e-19  Score=191.21  Aligned_cols=193  Identities=19%  Similarity=0.209  Sum_probs=160.4

Q ss_pred             cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCC--------------CCCcchhhcCCCCCcEEE-eeCCCCCCC
Q 010182          228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNL--------------LETLPDSIGLLDNLKILD-VSGNKLSAL  292 (516)
Q Consensus       228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~--------------l~~l~~~l~~l~~L~~L~-Ls~n~l~~l  292 (516)
                      ..+++|+.|+|++|.++.+|..++.+++|+.|++++|.              ...+|..++.+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45788999999999999999999999999999997663              224456778888888888 566544322


Q ss_pred             Cc------cccc--CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcch
Q 010182          293 PD------SISH--CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA  364 (516)
Q Consensus       293 ~~------~l~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~  364 (516)
                      +.      .+..  ...|+.|++++|.++.+|.  +..+++|+.|++++|.++.+|..++.+++|++|+|++|.++++| 
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence            11      1111  2359999999999999986  55699999999999999999999999999999999999999998 


Q ss_pred             hhCCCCCCcEEEcccCCCCCCCc--chhhcCCCCccEEeccCCCCCCchh----hhcCCCcccEEec
Q 010182          365 TIGKLTNLEILNVSSNFTDMKEL--PETFGELTNLKELDLSNNQIHALPN----TFGRLDKLIKLNL  425 (516)
Q Consensus       365 ~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~i~~lp~----~l~~l~~L~~L~L  425 (516)
                      .++.+++|+.|+|++|.+.  ++  |..++.+++|+.|+|++|.++.+|+    .+..+++|+.|++
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~--~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQ--QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCC--SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCCCCC--CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8999999999999999654  44  8899999999999999999998764    3445899999975

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=2.3e-17  Score=182.62  Aligned_cols=216  Identities=21%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEE-----EeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEE
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLM-----SLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKIL  282 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L-----~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L  282 (516)
                      +.++.|+|.++.+...+..+.....|+.+     +++.|.+...+..+..+++|+.|+|++|.+..+|..+..+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            56788888888887766544333333333     3334445555678888999999999999999998888899999999


Q ss_pred             EeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC-
Q 010182          283 DVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-  361 (516)
Q Consensus       283 ~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-  361 (516)
                      +|++|.|+.+|..+..+++|+.|+|++|.|+.+|..+. .+++|++|+|++|.++.+|..++.+++|++|+|++|.+++ 
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence            99999999999889999999999999999998887765 5999999999999999999889999999999999999987 


Q ss_pred             cchhhCCCC-CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC--------CCCCc-hhhhcCCCcccEEecccCCCC
Q 010182          362 LPATIGKLT-NLEILNVSSNFTDMKELPETFGELTNLKELDLSNN--------QIHAL-PNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       362 l~~~l~~l~-~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n--------~i~~l-p~~l~~l~~L~~L~L~~N~l~  431 (516)
                      +|..+.... .+..|+|++|.+. ..+|      ..|+.|++++|        .+..+ +..+..+..+....+++|-+.
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~-~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPE-IPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCC-CCCC------CC-----------------------------------------CCC
T ss_pred             ChHHHhhcchhhhHHhhccCccc-CcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            455543332 1234778888654 3333      35667777776        22222 234456667777788888774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=3.6e-18  Score=184.70  Aligned_cols=204  Identities=14%  Similarity=0.058  Sum_probs=90.8

Q ss_pred             CCCCCcEEEeeCCCCCC--CCcccccCCCCcEEeCCCCCCCc-CChhhhhcCCCCcEEecC---------CCCCcc--cc
Q 010182          275 LLDNLKILDVSGNKLSA--LPDSISHCRSLVELDASFNRLAY-LPTNIGHELVNLQKLLVP---------LNKIRF--LP  340 (516)
Q Consensus       275 ~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~---------~n~l~~--l~  340 (516)
                      .+++|++|++++|.++.  +...+..+++|++|++++| ++. ....+...+++|++|++.         .+.++.  +.
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            45566666666665441  1222344556666666555 221 111122235556666552         223331  11


Q ss_pred             chhcCCCCCcEEEccCCCCCCc-chhh-CCCCCCcEEEcc--c----CCCC----CCCcchhhcCCCCccEEeccCCCCC
Q 010182          341 TSIGEMASLRHLDAHFNELHGL-PATI-GKLTNLEILNVS--S----NFTD----MKELPETFGELTNLKELDLSNNQIH  408 (516)
Q Consensus       341 ~~l~~l~~L~~L~Ls~n~l~~l-~~~l-~~l~~L~~L~L~--~----n~~~----~~~l~~~l~~l~~L~~L~L~~n~i~  408 (516)
                      .....+++|++|.+++|.+++. ...+ ..+++|+.|+++  +    +.++    ..+++..+..+++|+.|+|++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            1112345566665555555541 1122 235566666665  2    2222    012222344555666666655 444


Q ss_pred             Cc-hhhhcC-CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcc-ccc
Q 010182          409 AL-PNTFGR-LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW-LTR  485 (516)
Q Consensus       409 ~l-p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~-~~~  485 (516)
                      +. +..+.. +++|+.|+|++|.+++.+...+                  ....++++.|+|++|.+++..+.... ..+
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l------------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV------------------LSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH------------------HHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHH------------------HhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            22 123332 5566666666665532211111                  01234566666666666443332222 245


Q ss_pred             cccEEEccCCccc
Q 010182          486 STSWLKTVGENVS  498 (516)
Q Consensus       486 ~l~~l~l~~N~ls  498 (516)
                      +++.|++++|+++
T Consensus       507 ~L~~L~l~~~~~~  519 (594)
T 2p1m_B          507 TMRSLWMSSCSVS  519 (594)
T ss_dssp             GSSEEEEESSCCB
T ss_pred             CCCEEeeeCCCCC
Confidence            5666666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.66  E-value=3.6e-16  Score=140.79  Aligned_cols=133  Identities=22%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             CCCccEEEeecCCCC--cchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEE
Q 010182          207 GKSLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILD  283 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~  283 (516)
                      .++++.|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            356777777777766  6666666667777777777776666 566666777777777777665 555555566777777


Q ss_pred             eeCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh---hhhhcCCCCcEEecCCCCCcccc
Q 010182          284 VSGNKLSALP--DSISHCRSLVELDASFNRLAYLPT---NIGHELVNLQKLLVPLNKIRFLP  340 (516)
Q Consensus       284 Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~l~  340 (516)
                      +++|.++.++  ..+..+++|++|++++|.++.++.   ..+..+++|+.|++++|.+..+|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            7777666654  456666666666666666665554   33334555555555555554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.6e-16  Score=139.02  Aligned_cols=133  Identities=26%  Similarity=0.213  Sum_probs=85.4

Q ss_pred             CCCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEe
Q 010182          230 IAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELD  306 (516)
Q Consensus       230 l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~  306 (516)
                      .++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            466777777777777  6666667777777777777777766 566677777777777777776 455555567777777


Q ss_pred             CCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccccc----hhcCCCCCcEEEccCCCCCCcc
Q 010182          307 ASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFLPT----SIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       307 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      +++|.++.++. ..+..+++|+.|++++|.+..++.    .+..+++|++|++++|.+..+|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            77776666542 233345556666666665555544    4455555555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=2.4e-16  Score=174.35  Aligned_cols=147  Identities=26%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             CCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCC----------CCCCcccccCCCCcEEeCCCCCCCcCChhhhhcC
Q 010182          254 VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL----------SALPDSISHCRSLVELDASFNRLAYLPTNIGHEL  323 (516)
Q Consensus       254 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l----------~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l  323 (516)
                      ++++.|+|.+|.+...+..+     |+.++|+.|.|          ...+..+..+.+|+.|+|++|.+..++..++ .+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l  246 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GC
T ss_pred             CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CC
Confidence            56788888888888765543     33344444433          3233444455555555555555555554444 24


Q ss_pred             CCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEecc
Q 010182          324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLS  403 (516)
Q Consensus       324 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~  403 (516)
                      ++|+.|+|++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|++|+|++|.+  ..+|..++.+++|+.|+|+
T Consensus       247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCCEECT
T ss_pred             CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccEEeCC
Confidence            55555555555554444444444445555555544444444444444444444444422  2344444444444444444


Q ss_pred             CCCCC
Q 010182          404 NNQIH  408 (516)
Q Consensus       404 ~n~i~  408 (516)
                      +|.|+
T Consensus       325 ~N~l~  329 (727)
T 4b8c_D          325 GNPLE  329 (727)
T ss_dssp             TSCCC
T ss_pred             CCccC
Confidence            44444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.63  E-value=7.6e-17  Score=164.34  Aligned_cols=228  Identities=16%  Similarity=0.120  Sum_probs=107.7

Q ss_pred             HHHHHHhhHHHHhhhhhhhhcccCccchhHHHHHHHHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 010182           96 KARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALR--EDSAKEKNACKKILELDDMHEAYEKMLKEAEERL  173 (516)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~el~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~~  173 (516)
                      .|+||.+.++.++.|+ .++++.++++..++.+|++...+....  ...++....+.|++++++     +.+.+++.   
T Consensus         1 ~FL~GL~~~~~~~~L~-~l~~~~~~~~~~~~l~~lk~~l~~~~~~~~~~~~~lnl~~cl~e~~~-----~~l~~~~~---   71 (372)
T 3un9_A            1 MLLVGLLSAHNRAVLA-QLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQN-----QRFSAEVL---   71 (372)
T ss_dssp             -------------------------------------------CCCSCHHHHHHHHHHHHHHHT-----HHHHHHHH---
T ss_pred             CcccccCCHHHHHHHH-HhccchhHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHhcC-----HHHHHHHH---
Confidence            4899999999999999 667777788888999988865433211  122234556667776655     33333222   


Q ss_pred             HHHHHHhhcCCCCCCCccccccHHHHHHhHHhhCCCccEEEeecCCCCcc-----hHhhcC-CCCCcEEEeecCCCCCc-
Q 010182          174 VKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFL-----PEAFGR-IAGLRLMSLSNNHLEVI-  246 (516)
Q Consensus       174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l-----~~~~~~-l~~L~~L~Ls~n~l~~l-  246 (516)
                                                        +.++.|++++|.++..     ...+.. .++|+.|+|++|.++.. 
T Consensus        72 ----------------------------------~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~  117 (372)
T 3un9_A           72 ----------------------------------SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG  117 (372)
T ss_dssp             ----------------------------------TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH
T ss_pred             ----------------------------------hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH
Confidence                                              5688899999998732     233332 36888888888888732 


Q ss_pred             -chhhcCCCCccEEEeeCCCCCCcc-----hhh-cCCCCCcEEEeeCCCCCC-----CCcccccCCCCcEEeCCCCCCCc
Q 010182          247 -PDSIAGLVNLEELNLASNLLETLP-----DSI-GLLDNLKILDVSGNKLSA-----LPDSISHCRSLVELDASFNRLAY  314 (516)
Q Consensus       247 -~~~l~~l~~L~~L~Ls~n~l~~l~-----~~l-~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~  314 (516)
                       ..-...+++|++|+|++|.|+...     ..+ ...++|++|+|++|.|+.     ++..+..+++|++|++++|.++.
T Consensus       118 ~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence             112233457788888888777322     222 235667777777776652     33344555666666666665543


Q ss_pred             CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCC
Q 010182          315 LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMK  385 (516)
Q Consensus       315 l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~  385 (516)
                      ....                   .++..+..+++|++|+|++|.+++     ++..+..+++|++|+|++|.++..
T Consensus       198 ~g~~-------------------~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          198 EGLE-------------------LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHH-------------------HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHH-------------------HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            2111                   123445555667777777777765     344555667777777777765533

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.6e-15  Score=133.70  Aligned_cols=124  Identities=23%  Similarity=0.226  Sum_probs=85.8

Q ss_pred             CCccEEEeecCCCC--cchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEEe
Q 010182          208 KSLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILDV  284 (516)
Q Consensus       208 ~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L  284 (516)
                      ++++.|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            56777777777776  6666667777777777777777766 666777777777777777776 6666666777777777


Q ss_pred             eCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh---hhhhcCCCCcEEecC
Q 010182          285 SGNKLSALP--DSISHCRSLVELDASFNRLAYLPT---NIGHELVNLQKLLVP  332 (516)
Q Consensus       285 s~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~  332 (516)
                      ++|.++.++  ..+..+++|++|++++|.++.++.   ..+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777653  566667777777777777766655   344456666666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=2.7e-15  Score=136.19  Aligned_cols=129  Identities=22%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             cCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEe
Q 010182          251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL  330 (516)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  330 (516)
                      ..+.+|++|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.++...+..+++|+.|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            334455555555555554433222222555555555555544 3445555555555555555555444433455555555


Q ss_pred             cCCCCCccccc--hhcCCCCCcEEEccCCCCCCcchh----hCCCCCCcEEEcccC
Q 010182          331 VPLNKIRFLPT--SIGEMASLRHLDAHFNELHGLPAT----IGKLTNLEILNVSSN  380 (516)
Q Consensus       331 L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l~~~----l~~l~~L~~L~L~~n  380 (516)
                      +++|.++.++.  .+..+++|++|++++|.++.+|..    +..+++|+.|++++|
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            55555544443  444445555555555554444332    444444444444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=133.24  Aligned_cols=125  Identities=24%  Similarity=0.381  Sum_probs=76.6

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKL  289 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l  289 (516)
                      +.+++++++++.+|..+.  ++|+.|++++|.++.+|..|..+++|++|+|++|.|+.++. .|..+++|++|+|++|.|
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            456666666666665432  46666666666666666666666666666666666665543 456666666666666666


Q ss_pred             CCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          290 SALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       290 ~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      +.++. .+..+++|+.|++++|.++.++...+..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            65533 4555666666666666666666555555556666666555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=6e-15  Score=129.90  Aligned_cols=83  Identities=23%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             CCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEeC
Q 010182          231 AGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDA  307 (516)
Q Consensus       231 ~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L  307 (516)
                      ++|+.|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            44555555555555  4444445555555555555555544 344445555555555555444 3333333444444444


Q ss_pred             CCCCCCc
Q 010182          308 SFNRLAY  314 (516)
Q Consensus       308 ~~n~l~~  314 (516)
                      ++|.++.
T Consensus        96 s~N~i~~  102 (149)
T 2je0_A           96 SGNKIKD  102 (149)
T ss_dssp             TTSCCCS
T ss_pred             CCCcCCC
Confidence            4444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=1.2e-14  Score=145.47  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             CCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCC
Q 010182          253 LVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASF  309 (516)
Q Consensus       253 l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~  309 (516)
                      +++|+.|+|.+ .++.++. +|..+++|+.+++++|.+..++ ..|..+.++..+....
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            56666666655 5555543 4555666666666666555442 3344444555444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=1.1e-14  Score=132.28  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=59.0

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEeeC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDVSG  286 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~  286 (516)
                      .+++.|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.|+.+|.. +..+++|++|++++
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            345555555555554433222222555555555555544 3444555555555555555544432 24455555555555


Q ss_pred             CCCCCCCc--ccccCCCCcEEeCCCCCCCcCChh---hhhcCCCCcEEecCCCC
Q 010182          287 NKLSALPD--SISHCRSLVELDASFNRLAYLPTN---IGHELVNLQKLLVPLNK  335 (516)
Q Consensus       287 n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~  335 (516)
                      |.++.++.  .+..+++|+.|++++|.++.++..   .+..+++|+.|+++.|.
T Consensus        98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            55544443  444444555555555544444432   22234444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=3.5e-14  Score=131.03  Aligned_cols=125  Identities=30%  Similarity=0.467  Sum_probs=89.6

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRL  312 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l  312 (516)
                      +++++++|.++.+|..+.  ++|++|++++|.|+.+|..|..+++|++|++++|.|+.++ ..+..+++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            567888888887776543  5788888888888877777777888888888888877664 3567777777777777777


Q ss_pred             CcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCC
Q 010182          313 AYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELH  360 (516)
Q Consensus       313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~  360 (516)
                      +.++...+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            77776666667777777777777766654 3555666666666666553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2.7e-14  Score=131.59  Aligned_cols=123  Identities=24%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch--hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCC
Q 010182          235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD--SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNR  311 (516)
Q Consensus       235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~  311 (516)
                      .+++++|.++.+|..+..  +|++|++++|.|+.++.  .++.+++|++|+|++|.++.+ |..+..+++|++|++++|.
T Consensus        12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            344444444444433221  44444444444444432  144444444444444444433 3334444444444444444


Q ss_pred             CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCC
Q 010182          312 LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNEL  359 (516)
Q Consensus       312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l  359 (516)
                      ++.++...+..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            4444433333344444444444444322 22333344444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2.2e-14  Score=132.15  Aligned_cols=127  Identities=21%  Similarity=0.266  Sum_probs=113.3

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch--hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD--SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~  286 (516)
                      -+.+++++++++.+|..+.  .+|++|++++|.++.++.  .+..+++|++|+|++|.|+.+ |..|..+++|++|+|++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3789999999999998654  489999999999998865  389999999999999999987 56899999999999999


Q ss_pred             CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc
Q 010182          287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF  338 (516)
Q Consensus       287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~  338 (516)
                      |.|+.++. .+..+++|++|++++|.++.+....+..+++|+.|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            99997754 58889999999999999998877777789999999999999873

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=5.1e-16  Score=143.88  Aligned_cols=128  Identities=25%  Similarity=0.323  Sum_probs=87.5

Q ss_pred             CccEEEeecC--CCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSR--GLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~--~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++.+.+.+.  .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            4555555544  45566667777788888888887777776 67777777788877777777776666667777777777


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCcc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRF  338 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~  338 (516)
                      |.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            7777765 56666777777777777766544 233446666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=2.4e-13  Score=123.31  Aligned_cols=126  Identities=29%  Similarity=0.450  Sum_probs=75.7

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGN  287 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n  287 (516)
                      .+.+++++++++.+|..+  .++|+.|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            355666666666666433  2566666666666665543 35666666666666666666554 3456666666666666


Q ss_pred             CCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          288 KLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       288 ~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      .++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            66655433 455666666666666666665555444555555555555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=4.1e-13  Score=121.76  Aligned_cols=127  Identities=26%  Similarity=0.386  Sum_probs=85.9

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFN  310 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n  310 (516)
                      .+.++++++.++.+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4667777777777765443  577788888777776665 456777777777777777766543 466777777777777


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCC
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~  361 (516)
                      .++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            77776666555566666676666666666544 3556666666666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=2e-13  Score=136.58  Aligned_cols=228  Identities=17%  Similarity=0.180  Sum_probs=167.5

Q ss_pred             ccccHHHHHHhHHhhCCCccEEEeecCCCC--------------------cchH-hhcC--------CCCCcEEEeecCC
Q 010182          192 EEVNEEVMGLLQEAAGKSLEQVDLSSRGLR--------------------FLPE-AFGR--------IAGLRLMSLSNNH  242 (516)
Q Consensus       192 ~~~~~~~~~~l~~~~~~~L~~L~L~~~~l~--------------------~l~~-~~~~--------l~~L~~L~Ls~n~  242 (516)
                      +.+....+..+... .++|+.|||++|.+.                    .+|. +|..        +++|+.|+|.+ .
T Consensus        34 g~i~~~~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~  111 (329)
T 3sb4_A           34 GKLNAEDFRHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K  111 (329)
T ss_dssp             EEECHHHHHHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T
T ss_pred             ccccHHHHHHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c
Confidence            33444455555442 578999999999988                    3443 5778        99999999999 8


Q ss_pred             CCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC----CCCC-CcccccCCCCc-EEeCCCCC---
Q 010182          243 LEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK----LSAL-PDSISHCRSLV-ELDASFNR---  311 (516)
Q Consensus       243 l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~----l~~l-~~~l~~l~~L~-~L~L~~n~---  311 (516)
                      ++.++ .+|.++++|+.|++.+|.+..++. +|..+.++..+.+..+.    ...+ ...+..+..|+ .+.+....   
T Consensus       112 i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~  191 (329)
T 3sb4_A          112 IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE  191 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred             ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence            98884 589999999999999999987765 67777777776665521    1222 22344555555 33332111   


Q ss_pred             ---------------------CC-cCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhC
Q 010182          312 ---------------------LA-YLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIG  367 (516)
Q Consensus       312 ---------------------l~-~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~  367 (516)
                                           +. .-...+...+++|+.+++.+|++..++. .+..|.+|++|++..| ++.++. ++.
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~  270 (329)
T 3sb4_A          192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS  270 (329)
T ss_dssp             HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence                                 00 0001111237899999999999998876 5788999999999998 777654 789


Q ss_pred             CCCCCc-EEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEec
Q 010182          368 KLTNLE-ILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNL  425 (516)
Q Consensus       368 ~l~~L~-~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L  425 (516)
                      .+.+|+ .+++.++   +..+ +.+|.++++|+.|++++|+++.++ .+|..+++|+.++.
T Consensus       271 ~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          271 NCGRLAGTLELPAS---VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCTTCCEEEEECTT---CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CChhccEEEEEccc---ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999 9999884   2333 368899999999999999999997 79999999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.45  E-value=6.5e-13  Score=136.55  Aligned_cols=262  Identities=16%  Similarity=0.177  Sum_probs=166.3

Q ss_pred             ccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~  286 (516)
                      ++.+.+.+ .++.++. +|..+ +|+.+.+..+ +..+. .+|.++ +|+.+.+.. .++.++. +|..+.+|+.+++++
T Consensus       115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~  189 (401)
T 4fdw_A          115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK  189 (401)
T ss_dssp             CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred             ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence            33444432 2444443 46553 6888887665 66663 356663 688888775 5666653 677778888888888


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-chh
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PAT  365 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~  365 (516)
                      |.++.++.....+.+|+.+.+.. .++.++...|.++.+|+.+.+..+ +..+........+|+.+.+ .+.++.+ ..+
T Consensus       190 n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~a  266 (401)
T 4fdw_A          190 TKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRA  266 (401)
T ss_dssp             SCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTT
T ss_pred             CcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhH
Confidence            88877766555567888888874 377777777777888888888764 5555443322267888877 3446665 346


Q ss_pred             hCCCCCCcEEEcccCCCCC---CCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          366 IGKLTNLEILNVSSNFTDM---KEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       366 l~~l~~L~~L~L~~n~~~~---~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                      +..+++|+.+.+.+|.+..   ..+ ...|.++++|+.++|. +.++.++ .+|..|++|+.+.|..| +..++...|. 
T Consensus       267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~-  343 (401)
T 4fdw_A          267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN-  343 (401)
T ss_dssp             TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS-
T ss_pred             hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC-
Confidence            7778888888887774320   012 3467777888888887 4477775 67777888888888544 5555444333 


Q ss_pred             hhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcccc-ccccEEEccCCcccccc
Q 010182          441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLT-RSTSWLKTVGENVSGIL  501 (516)
Q Consensus       441 ~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~-~~l~~l~l~~N~ls~~~  501 (516)
                                        .. +++.+++.+|.+.......+... ..+..+.+-.|.+..+.
T Consensus       344 ------------------~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~  386 (401)
T 4fdw_A          344 ------------------NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK  386 (401)
T ss_dssp             ------------------SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred             ------------------CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence                              12 45667777776665544444443 24566777766665554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=4e-15  Score=137.78  Aligned_cols=139  Identities=24%  Similarity=0.305  Sum_probs=76.1

Q ss_pred             CCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhc
Q 010182          265 LLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG  344 (516)
Q Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~  344 (516)
                      .++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+                        |..+.
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l------------------------~~~~~   90 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI------------------------ENLDA   90 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC------------------------SSHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc------------------------cchhh
Confidence            34444445555555555555555555554 445555555555555555444                        44444


Q ss_pred             CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcc--hhhcCCCCccEEeccCCCCCCch-----------
Q 010182          345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP--ETFGELTNLKELDLSNNQIHALP-----------  411 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L~L~~n~i~~lp-----------  411 (516)
                      .+++|++|++++|.++++| .+..+++|+.|++++|.+  ..++  ..+..+++|++|++++|.++..+           
T Consensus        91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i--~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI  167 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEEC--CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred             cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcC--CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence            4455555555555555554 344555556666655533  2222  24556666666666666665432           


Q ss_pred             hhhcCCCcccEEecccCCCCCC
Q 010182          412 NTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       412 ~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ..+..+++|+.|+  +|+++..
T Consensus       168 ~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          168 EVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             HHHHHCSSCSEEC--CGGGTTT
T ss_pred             HHHHhCCCcEEEC--CcccCHH
Confidence            2367788888876  6666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=9.5e-12  Score=127.84  Aligned_cols=219  Identities=13%  Similarity=0.188  Sum_probs=175.0

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS  285 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls  285 (516)
                      .+|+.+.+..+ ++.++. +|.. .+|+.+.+.+ .+..+ ..+|.++++|+.+++.+|.++.++...-...+|+.+.+.
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp  211 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP  211 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred             CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence            47899998766 777765 5766 4799999986 77777 468999999999999999999998744347899999998


Q ss_pred             CCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCC---
Q 010182          286 GNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELH---  360 (516)
Q Consensus       286 ~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~---  360 (516)
                      .+ ++.++ ..|.+|.+|+.+++..+ ++.++...|.+ .+|+.+.+ .+.+..+ ..++..|.+|+.+++.+|.+.   
T Consensus       212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~  287 (401)
T 4fdw_A          212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP  287 (401)
T ss_dssp             TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred             Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence            55 77664 56888999999999875 78888888876 89999999 4556666 357888999999999988775   


Q ss_pred             --Cc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCH
Q 010182          361 --GL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       361 --~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                        .+ ..++..|++|+.+.+.++   +..+ ..+|.++.+|+.+.|..+ ++.++ .+|..+ +|+.+++.+|.+...+.
T Consensus       288 ~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          288 EAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             TCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             ccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence              34 458889999999999864   2333 357888999999999654 88875 789999 99999999998876654


Q ss_pred             HHH
Q 010182          436 EVV  438 (516)
Q Consensus       436 ~~~  438 (516)
                      ..+
T Consensus       363 ~~F  365 (401)
T 4fdw_A          363 KVW  365 (401)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=2.1e-13  Score=138.77  Aligned_cols=179  Identities=20%  Similarity=0.191  Sum_probs=121.5

Q ss_pred             CCCccEEEeeCCCCCCc-----chhhcC-CCCCcEEEeeCCCCCCC--CcccccCCCCcEEeCCCCCCCcCChhhh----
Q 010182          253 LVNLEELNLASNLLETL-----PDSIGL-LDNLKILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIG----  320 (516)
Q Consensus       253 l~~L~~L~Ls~n~l~~l-----~~~l~~-l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~l~~l~~~~~----  320 (516)
                      +++|++|++++|.++..     ...+.. .++|++|+|++|.++..  ......+.+|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45799999999999843     233333 36899999999988732  1122335688999999998875433222    


Q ss_pred             -hcCCCCcEEecCCCCCcc-----ccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---
Q 010182          321 -HELVNLQKLLVPLNKIRF-----LPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE---  386 (516)
Q Consensus       321 -~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---  386 (516)
                       ...++|+.|++++|.++.     ++..+..+++|++|+|++|.+++     ++..+..+++|++|+|++|.++..+   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             236789999999998863     45566778889999999998876     4566777888999999998665332   


Q ss_pred             cchhhcCCCCccEEeccCCCCCCch-hhhcCC---C--cccEEe--cccCCCC
Q 010182          387 LPETFGELTNLKELDLSNNQIHALP-NTFGRL---D--KLIKLN--LEENPMV  431 (516)
Q Consensus       387 l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l---~--~L~~L~--L~~N~l~  431 (516)
                      +...+...++|++|+|++|.|+... ..+...   .  .|+.+.  +..|.++
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            3344556788999999999888543 333222   2  166666  6666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=8.9e-12  Score=112.78  Aligned_cols=101  Identities=26%  Similarity=0.386  Sum_probs=44.6

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~n~  288 (516)
                      +.++++++.++.+|..+.  ++|++|++++|.++.+ |..|.++++|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            344444444444444332  4444444444444444 33444444444444444444444432 2344444444444444


Q ss_pred             CCCCCcc-cccCCCCcEEeCCCCCCC
Q 010182          289 LSALPDS-ISHCRSLVELDASFNRLA  313 (516)
Q Consensus       289 l~~l~~~-l~~l~~L~~L~L~~n~l~  313 (516)
                      |+.++.. +..+++|++|++++|.+.
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cceeCHHHhccccCCCEEEeCCCCcc
Confidence            4444332 334444444444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=1.2e-11  Score=111.52  Aligned_cols=100  Identities=25%  Similarity=0.398  Sum_probs=43.9

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK  288 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~  288 (516)
                      +.++++++.++.+|..+.  ++|++|+|++|.|+.+ +..|.++++|++|+|++|.|+.++. .|..+++|++|+|++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            344444444444443321  4444444444444444 3334444444444444444444433 23444444444444444


Q ss_pred             CCCCCc-ccccCCCCcEEeCCCCCC
Q 010182          289 LSALPD-SISHCRSLVELDASFNRL  312 (516)
Q Consensus       289 l~~l~~-~l~~l~~L~~L~L~~n~l  312 (516)
                      |+.++. .+..+++|+.|++++|.+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            444432 233444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.30  E-value=1.2e-11  Score=111.81  Aligned_cols=105  Identities=27%  Similarity=0.339  Sum_probs=70.0

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCCC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFNR  311 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~  311 (516)
                      +.+++++|.++.+|..+.  ++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777766553  5777777777777766 34566777777777777777766554 3566777777777777


Q ss_pred             CCcCChhhhhcCCCCcEEecCCCCCcccc
Q 010182          312 LAYLPTNIGHELVNLQKLLVPLNKIRFLP  340 (516)
Q Consensus       312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l~  340 (516)
                      |+.++...+..+++|+.|++++|.+...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            76666665555666666666666665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.29  E-value=1.2e-11  Score=111.36  Aligned_cols=103  Identities=24%  Similarity=0.330  Sum_probs=66.0

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFN  310 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n  310 (516)
                      .+.+++++|.++.+|..+.  ++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.++.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777777665542  5677777777777766 34566666777777777766666543 456666666666666


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      .++.++...+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            666666655555666666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.08  E-value=6e-10  Score=111.90  Aligned_cols=102  Identities=24%  Similarity=0.254  Sum_probs=76.7

Q ss_pred             EEecCCC-CCccccchhcCCCCCcEEEccC-CCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEecc
Q 010182          328 KLLVPLN-KIRFLPTSIGEMASLRHLDAHF-NELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLS  403 (516)
Q Consensus       328 ~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~-n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~  403 (516)
                      .++++++ +++.+|. +..+++|++|+|++ |.++.++ ..+..+++|+.|+|++|.+.  .+ |..|.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCC
Confidence            4566666 6777777 77777888888885 8888765 46788888888888888543  34 4467888888888888


Q ss_pred             CCCCCCchh-hhcCCCcccEEecccCCCCCC
Q 010182          404 NNQIHALPN-TFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       404 ~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      +|+|+.+|. .+..++ |+.|+|.+|++...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            888888874 444444 99999999988764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.07  E-value=3.3e-10  Score=113.84  Aligned_cols=103  Identities=23%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             cEEEeecC-CCCcchHhhcCCCCCcEEEeec-CCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182          211 EQVDLSSR-GLRFLPEAFGRIAGLRLMSLSN-NHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG  286 (516)
Q Consensus       211 ~~L~L~~~-~l~~l~~~~~~l~~L~~L~Ls~-n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~  286 (516)
                      ..++++++ +++.+|. +..+++|+.|+|++ |.++.++ ..|.++++|++|+|++|.|+.++. .|..+++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35788888 8999998 88899999999996 8999885 578899999999999999997765 678899999999999


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAY  314 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~  314 (516)
                      |.|+.+|..+.....|+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999887665544449999999998764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.91  E-value=8.2e-10  Score=111.57  Aligned_cols=83  Identities=16%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             CCCCCcEEEccCCCCCC-cchhh---CCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCch-hhhcC
Q 010182          345 EMASLRHLDAHFNELHG-LPATI---GKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHALP-NTFGR  416 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~l~~-l~~~l---~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~  416 (516)
                      .+++|++|++.+|.+++ .+..+   ..+++|++|+|+.|.++..+   ++..+..+++|+.|+|++|.|++-. ..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            35677777777777654 11111   24667888888777554332   2223345678888888888777431 33332


Q ss_pred             -CCcccEEecccCC
Q 010182          417 -LDKLIKLNLEENP  429 (516)
Q Consensus       417 -l~~L~~L~L~~N~  429 (516)
                       +  ...++++++.
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  4557787776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.4e-09  Score=109.77  Aligned_cols=67  Identities=19%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             CCCCCcEEEcccCCCCCCCcchhh---cCCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccCCCCCCCH
Q 010182          368 KLTNLEILNVSSNFTDMKELPETF---GELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l---~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      .+++|++|+|.+|.+.... +..+   ..+++|++|+|+.|.|++     ++..+..+++|+.|+|++|.|++...
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            3567777777766443211 1112   235667777777777664     23344556677777777776664433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.86  E-value=1.7e-08  Score=103.35  Aligned_cols=259  Identities=14%  Similarity=0.158  Sum_probs=134.8

Q ss_pred             CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC------------------
Q 010182          208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE------------------  267 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~------------------  267 (516)
                      .+|+.+.+.. .++.++. +|..+.+|+.+++.++ ++.+ ..+|.++.+|+.+.+..+ +.                  
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence            5677777753 3666644 5777777777777644 5544 235566666665544322 11                  


Q ss_pred             ----Ccc-hhhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc
Q 010182          268 ----TLP-DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT  341 (516)
Q Consensus       268 ----~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~  341 (516)
                          .+. .+|..+.+|+.+.+..+. ..+ ...+..+.+|+.+.+..+ ++.+....+.++..|+.+.+..+... +..
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~  224 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD  224 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT
T ss_pred             ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh
Confidence                111 234555666666665432 223 234555666666666544 45555555555555555554433211 111


Q ss_pred             hhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCCCCCC------------------Cc-chhhcCCCCccEEe
Q 010182          342 SIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMK------------------EL-PETFGELTNLKELD  401 (516)
Q Consensus       342 ~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~------------------~l-~~~l~~l~~L~~L~  401 (516)
                      ......+|+.+.+..+ ++.+ ...+..+..|+.+.+..+...+.                  .+ ...+..+.+|+.+.
T Consensus       225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVK  303 (394)
T ss_dssp             TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEE
T ss_pred             hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccc
Confidence            1122233444433221 1111 11333444444444433311000                  01 12455677788888


Q ss_pred             ccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC
Q 010182          402 LSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT  480 (516)
Q Consensus       402 L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~  480 (516)
                      +.++ ++.++ .+|..+.+|+.++|..+ ++.++...|.                   ...+|+.+++..| ++.....+
T Consensus       304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-------------------GCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-------------------TCTTCCEECCCTT-CCEECTTT
T ss_pred             cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-------------------CCCCCCEEEECcc-ccEehHHH
Confidence            7654 66665 67888888888888643 5555544433                   1234566667555 55555566


Q ss_pred             ccccccccEEEccCC
Q 010182          481 GWLTRSTSWLKTVGE  495 (516)
Q Consensus       481 ~~~~~~l~~l~l~~N  495 (516)
                      +..+.+|+.+++..+
T Consensus       362 F~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          362 FQGCINLKKVELPKR  376 (394)
T ss_dssp             BTTCTTCCEEEEEGG
T ss_pred             hhCCCCCCEEEECCC
Confidence            777778888888654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.80  E-value=2.7e-09  Score=97.35  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=84.0

Q ss_pred             cCCCCcEEecCCC-CCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---c
Q 010182          322 ELVNLQKLLVPLN-KIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE---L  387 (516)
Q Consensus       322 ~l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---l  387 (516)
                      ..++|++|++++| .+.     .+...+...++|++|+|++|.+++     +...+...++|++|+|++|.++..+   +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3555666666666 554     344566677788888888888876     5566777788999999999776443   3


Q ss_pred             chhhcCCCCccEEec--cCCCCCC-----chhhhcCCCcccEEecccCCCCCC
Q 010182          388 PETFGELTNLKELDL--SNNQIHA-----LPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       388 ~~~l~~l~~L~~L~L--~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ...+...++|++|+|  ++|.|+.     +...+..+++|++|+|++|.++..
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            455667788999999  8899984     557788889999999999988643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=6.6e-09  Score=94.72  Aligned_cols=106  Identities=17%  Similarity=0.270  Sum_probs=60.2

Q ss_pred             CCCccEEEeecC-CCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCC-----cc
Q 010182          207 GKSLEQVDLSSR-GLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLET-----LP  270 (516)
Q Consensus       207 ~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~  270 (516)
                      .+.|++|+|++| .+.     .+...+...++|++|+|++|.|+     .+...+...++|++|+|++|.|+.     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            356777777776 665     23445556666777777777665     234445555566666666666662     33


Q ss_pred             hhhcCCCCCcEEEe--eCCCCCC-----CCcccccCCCCcEEeCCCCCC
Q 010182          271 DSIGLLDNLKILDV--SGNKLSA-----LPDSISHCRSLVELDASFNRL  312 (516)
Q Consensus       271 ~~l~~l~~L~~L~L--s~n~l~~-----l~~~l~~l~~L~~L~L~~n~l  312 (516)
                      ..+...++|++|+|  ++|.|+.     +...+...++|++|++++|.+
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            44555555666666  5555551     233444445555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.71  E-value=2.1e-07  Score=95.07  Aligned_cols=82  Identities=11%  Similarity=0.371  Sum_probs=43.0

Q ss_pred             hhcCCCCCcEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCC
Q 010182          342 SIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLD  418 (516)
Q Consensus       342 ~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~  418 (516)
                      .+.++.+|+.+.+. +.++.++ .++..+.+|+.+.|..+   +..+ ..+|.++.+|+.+.|..+ ++.+. .+|.+|.
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            34444555555543 2333332 24555666666666554   1222 234556666666666433 55554 5666666


Q ss_pred             cccEEecccC
Q 010182          419 KLIKLNLEEN  428 (516)
Q Consensus       419 ~L~~L~L~~N  428 (516)
                      +|+.+++.++
T Consensus       358 ~L~~i~~~~~  367 (394)
T 4gt6_A          358 ALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEESSC
T ss_pred             CCCEEEECCc
Confidence            6666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.70  E-value=2.6e-07  Score=94.37  Aligned_cols=259  Identities=12%  Similarity=0.186  Sum_probs=133.6

Q ss_pred             CccEEEeecCCCCcchH-hhcCCCCCcEEEeecCC---CCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEE
Q 010182          209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNH---LEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKIL  282 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~---l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L  282 (516)
                      .|+.+.+..+ ++.+.. +|..+.+|+.+.+..|.   ++.+ ..+|.++.+|+.+.+..+ ++.++. .|..+.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            4777777653 666644 68888888888887653   5555 346777777777666543 444433 56677778877


Q ss_pred             EeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCC---
Q 010182          283 DVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE---  358 (516)
Q Consensus       283 ~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~---  358 (516)
                      .+..+ +..+ ...+..+.+|+.+.+..+ ++.+....|. ...|+.+.+..+-...-..++..+.++.......+.   
T Consensus       143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence            77643 2333 234566777777776543 4455555554 345555555433222111222233333322211110   


Q ss_pred             ---------------------------------CCCc-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccC
Q 010182          359 ---------------------------------LHGL-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN  404 (516)
Q Consensus       359 ---------------------------------l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~  404 (516)
                                                       ++.+ ..++..+..|+.+.+..+...+.  ...+.++..|+.+.+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~-  296 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFS-  296 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECC-
T ss_pred             ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceec--CcccccccccccccCC-
Confidence                                             0011 12455566666666655422111  2345556666666664 


Q ss_pred             CCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc
Q 010182          405 NQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL  483 (516)
Q Consensus       405 n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~  483 (516)
                      +.++.++ .+|..|.+|+.++|..+ ++.++...|.                   ...+|+.+.+..+ ++.....++..
T Consensus       297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------~C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-------------------GCEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------------------TCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh-------------------CCCCCCEEEECcc-cCEEhHhHhhC
Confidence            3455554 55666666666666543 4433333222                   1123444444322 44333344555


Q ss_pred             cccccEEEccCCc
Q 010182          484 TRSTSWLKTVGEN  496 (516)
Q Consensus       484 ~~~l~~l~l~~N~  496 (516)
                      +.+|+.+++.+|.
T Consensus       356 C~~L~~i~~~~~~  368 (394)
T 4gt6_A          356 CTALNNIEYSGSR  368 (394)
T ss_dssp             CTTCCEEEESSCH
T ss_pred             CCCCCEEEECCce
Confidence            5666666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.58  E-value=3.2e-07  Score=93.72  Aligned_cols=193  Identities=17%  Similarity=0.226  Sum_probs=106.0

Q ss_pred             hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC---------------
Q 010182          226 AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK---------------  288 (516)
Q Consensus       226 ~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~---------------  288 (516)
                      +|..+.+|+.+.+.++ +..+ ...|.++.+|+.+.+..+ ++.++. +|..+..|+.+.+..+.               
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence            4666666666666543 2333 335566666666666544 333322 44445555554443331               


Q ss_pred             ------CCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182          289 ------LSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       289 ------l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                            ++.+ ...+..+..|+.+.+..+ +..+....+..+..++.+....+.+..  ..+..+.+|+.+.+..+ ++.
T Consensus       235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~  310 (394)
T 4fs7_A          235 IIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKF  310 (394)
T ss_dssp             EEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCE
T ss_pred             EEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cce
Confidence                  1111 123344555555555443 223344444445555555544433221  24556677777777543 555


Q ss_pred             cc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccC
Q 010182          362 LP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN  428 (516)
Q Consensus       362 l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N  428 (516)
                      +. .++..+.+|+.+++..+   +..+ ..+|.++.+|+.+.+..+ ++.+. .+|..|++|+.+++..+
T Consensus       311 I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             echhhhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            43 36677778888887654   2233 346777778888887665 66665 67778888888877643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.17  E-value=1.1e-06  Score=80.03  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=82.6

Q ss_pred             cCCCCcEEecCCC-CCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc---
Q 010182          322 ELVNLQKLLVPLN-KIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL---  387 (516)
Q Consensus       322 ~l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l---  387 (516)
                      ..+.|++|+|++| .|.     .+...+...+.|+.|+|++|.+++     +...+...+.|++|+|++|.|+..+.   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456666777664 554     355677777889999999998876     66778888899999999998875543   


Q ss_pred             chhhcCCCCccEEeccCC---CCC-----CchhhhcCCCcccEEecccCCCC
Q 010182          388 PETFGELTNLKELDLSNN---QIH-----ALPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       388 ~~~l~~l~~L~~L~L~~n---~i~-----~lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                      ...+...+.|++|+|++|   .|.     .+...+...++|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            334556678999999876   455     35678889999999999887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.06  E-value=2.6e-06  Score=77.67  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=64.2

Q ss_pred             CCCccEEEeecC-CCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC-----Ccc
Q 010182          207 GKSLEQVDLSSR-GLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE-----TLP  270 (516)
Q Consensus       207 ~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~-----~l~  270 (516)
                      .+.|++|+|+++ .|.     .+.+++...+.|+.|+|++|.|+     .+...+...+.|++|+|++|.|+     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467888888774 665     34556666777777777777776     34455556667777777777776     233


Q ss_pred             hhhcCCCCCcEEEeeCCC---CC-----CCCcccccCCCCcEEeCCCCC
Q 010182          271 DSIGLLDNLKILDVSGNK---LS-----ALPDSISHCRSLVELDASFNR  311 (516)
Q Consensus       271 ~~l~~l~~L~~L~Ls~n~---l~-----~l~~~l~~l~~L~~L~L~~n~  311 (516)
                      .++.....|++|+|++|.   ++     .+...+...++|+.|+++.|.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            455555666666666542   23     123344455556666655544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=6.9e-07  Score=85.82  Aligned_cols=62  Identities=34%  Similarity=0.387  Sum_probs=33.7

Q ss_pred             cCCCCccEEEeeCCCCCCcc---hhhcCCCCCcEEEeeCCCCCCCCcccccCC--CCcEEeCCCCCCC
Q 010182          251 AGLVNLEELNLASNLLETLP---DSIGLLDNLKILDVSGNKLSALPDSISHCR--SLVELDASFNRLA  313 (516)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~--~L~~L~L~~n~l~  313 (516)
                      .++++|+.|+|++|.|+.++   ..+..+++|+.|+|++|.|+.+ ..+..+.  +|++|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            34556666666666666443   3344566666666666666544 2233322  5556666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.04  E-value=8.3e-05  Score=75.07  Aligned_cols=131  Identities=14%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             ccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCCcEEEccCCCCCCcc-hhhCCCCCCcE
Q 010182          297 SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEI  374 (516)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~  374 (516)
                      ..+.+|+.+.+..+ +..+....+.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            34445555555332 44445555555666666666544 33332 24455666666666432 44432 25566666777


Q ss_pred             EEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182          375 LNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       375 L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~  434 (516)
                      +.+.++.+  ..+ ...|.++.+|+.+.|..+ ++.+. .+|.+|.+|+.+.+..+ ++.++
T Consensus       291 i~l~~~~i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~  348 (379)
T 4h09_A          291 VVMDNSAI--ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE  348 (379)
T ss_dssp             EEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             cccccccc--ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence            76665522  222 235666666777766543 55554 56666677776666543 44333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.98  E-value=9.8e-05  Score=74.53  Aligned_cols=142  Identities=13%  Similarity=0.187  Sum_probs=105.4

Q ss_pred             hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCC
Q 010182          272 SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASL  349 (516)
Q Consensus       272 ~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L  349 (516)
                      .+....+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+....+.++.+|+.+.+..+ +..++ ..+..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566777776544 3333 345677899999999765 78888888888999999998654 55554 367888999


Q ss_pred             cEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcc
Q 010182          350 RHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKL  420 (516)
Q Consensus       350 ~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L  420 (516)
                      +.+.+.++.++.++ .++.++.+|+.+.|..+   +..+ ..+|.++.+|+.+.+..+ ++.+. .+|.++..+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA---LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            99999998888874 47889999999999875   2333 347889999999998754 77775 667666443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=2.8e-06  Score=81.54  Aligned_cols=79  Identities=29%  Similarity=0.360  Sum_probs=42.0

Q ss_pred             CCCCCcEEEccCCCCCCcc---hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCC-ch-------hh
Q 010182          345 EMASLRHLDAHFNELHGLP---ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA-LP-------NT  413 (516)
Q Consensus       345 ~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~-lp-------~~  413 (516)
                      ++++|+.|+|++|.+++++   ..+..+++|+.|+|++|.+....-...+..+ +|++|+|++|.++. +|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            3455666666666555532   3444566666666666644321111122223 67777777776653 22       34


Q ss_pred             hcCCCcccEEe
Q 010182          414 FGRLDKLIKLN  424 (516)
Q Consensus       414 l~~l~~L~~L~  424 (516)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56677777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=4.8e-06  Score=74.44  Aligned_cols=85  Identities=14%  Similarity=0.183  Sum_probs=59.0

Q ss_pred             CCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCC-CCCCCcchhhcCC----CCccEEeccCC-CCCCch-hhhcCCC
Q 010182          347 ASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNF-TDMKELPETFGEL----TNLKELDLSNN-QIHALP-NTFGRLD  418 (516)
Q Consensus       347 ~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l----~~L~~L~L~~n-~i~~lp-~~l~~l~  418 (516)
                      ..|++||+++|.+++. -..+..+++|++|+|++|. +++.++ ..+..+    ++|++|+|++| +||+-. ..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3678888888887762 2456778888888888883 554444 234443    36888888888 487543 5667788


Q ss_pred             cccEEecccCC-CCC
Q 010182          419 KLIKLNLEENP-MVI  432 (516)
Q Consensus       419 ~L~~L~L~~N~-l~~  432 (516)
                      +|+.|+|++|+ +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            88888888885 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.47  E-value=8.2e-05  Score=66.43  Aligned_cols=34  Identities=24%  Similarity=0.144  Sum_probs=15.9

Q ss_pred             CCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCC
Q 010182          371 NLEILNVSSNF-TDMKELPETFGELTNLKELDLSNN  405 (516)
Q Consensus       371 ~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n  405 (516)
                      +|++|+|++|. +++.++ ..+..+++|++|+|++|
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred             CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence            45555555542 333333 23344555555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0034  Score=53.05  Aligned_cols=55  Identities=25%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             EEEeeCCCCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          281 ILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       281 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      .++.+++.++  .+|..+.  .+|++|+|++|.|+.++...+..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555  5554432  34566666666666666666655666666666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.41  E-value=0.0029  Score=53.44  Aligned_cols=53  Identities=26%  Similarity=0.402  Sum_probs=28.8

Q ss_pred             EEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCC
Q 010182          235 LMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKL  289 (516)
Q Consensus       235 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l  289 (516)
                      .++.+++.++  .+|..+.  ++|++|+|++|.|+.++. .|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555  5554321  245666666666665544 445566666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	516
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-23
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-18
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-17
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-16
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-12
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-11
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-10
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-09
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-09
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-08
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 99.3 bits (246), Expect = 3e-23
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294
           L++ +N   ++ P  I    NL+EL+L  N L+ +  ++  L NL  LD++ N++S L  
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA- 257

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
            +S    L EL    N+++ +    G   +   +            + I  + +L +L  
Sbjct: 258 PLSGLTKLTELKLGANQISNISPLAGLTALTNLE---LNENQLEDISPISNLKNLTYLTL 314

Query: 355 HFNELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
           +FN +  +   +  LT L+ L  ++N  +D      +   LTN+  L   +NQI  L   
Sbjct: 315 YFNNISDISP-VSSLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQISDLTP- 368

Query: 414 FGRLDKLIKLNLEEN 428
              L ++ +L L + 
Sbjct: 369 LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL 269
           L  + L    +  +      +  L+ +  +NN +  +  S+A L N+  L+   N +  L
Sbjct: 309 LTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL 366

Query: 270 PDSIGLLDNLKILDVSGN 287
              +  L  +  L ++  
Sbjct: 367 T-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 249 SIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS 308
           S   L  +  L      ++++ D +  L+NL  ++ S N+L+ +   + +   LV++  +
Sbjct: 39  SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMN 96

Query: 309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG- 367
            N++A +        +    L            ++  +  L       +++  L      
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 368 -------------KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTF 414
                         L NL  L      ++         +LTNL+ L  +NNQI  +    
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 415 GRLDKLIKLNLEENPMVIPP 434
                L +L+L  N +    
Sbjct: 217 IL-TNLDELSLNGNQLKDIG 235

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 53/306 (17%), Positives = 109/306 (35%), Gaps = 29/306 (9%)

Query: 190 VREEVNE-EVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD 248
           ++  + +  V   + +     +  +     G++ + +    +  L  ++ SNN L  I  
Sbjct: 25  MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT- 82

Query: 249 SIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS 308
            +  L  L ++ + +N  +    +              N      D + +  +L  L+ S
Sbjct: 83  PLKNLTKLVDILMNNN--QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140

Query: 309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFL------------------PTSIGEMASLR 350
            N ++ +    G   +        +  ++ L                   + + ++ +L 
Sbjct: 141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200

Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL 410
            L A  N++  +       TNL+ L+++ N     +   T   LTNL +LDL+NNQI  L
Sbjct: 201 SLIATNNQISDITPLGIL-TNLDELSLNGNQL---KDIGTLASLTNLTDLDLANNQISNL 256

Query: 411 PNTFGRLDKLIKLNLEENPMV-IPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLE 469
                 L KL +L L  N +  I P+  +               +  +   +  + L L 
Sbjct: 257 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 470 GNNNEG 475
            NN   
Sbjct: 316 FNNISD 321

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 7/57 (12%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN 264
             L+++  ++  +  +      +  +  +S  +N +  +   +A L  + +L L   
Sbjct: 329 TKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.8 bits (229), Expect = 1e-21
 Identities = 48/286 (16%), Positives = 93/286 (32%), Gaps = 64/286 (22%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNLLE 267
            L  V  S  GL  +P+         L+ L NN + E+       L NL  L L +N + 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 268 TL-PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
            + P +   L  L+ L +S N+L  LP+ +       EL    N +  +  ++ + L  +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQM 126

Query: 327 QKLLV---PLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN--- 380
             + +   PL        +   M  L ++      +  +P   G   +L  L++  N   
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKIT 184

Query: 381 -------------------------------------------FTDMKELPETFGELTNL 397
                                                         + ++P    +   +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

Query: 398 KELDLSNNQIHALPNT-------FGRLDKLIKLNLEENPMVIPPVE 436
           + + L NN I A+ +          +      ++L  NP+    ++
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 290

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 5e-18
 Identities = 34/179 (18%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS-A 291
           + L +       +   +  G+  L  + +A   + T+P   GL  +L  L + GNK++  
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKV 186

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351
              S+    +L +L  SFN ++ +         +L++L +  NK+  +P  + +   ++ 
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

Query: 352 LDAHFNELHGLPAT-------IGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDL 402
           +  H N +  + +          K  +   +++ SN     E+ P TF  +     + L
Sbjct: 247 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 1e-17
 Identities = 41/204 (20%), Positives = 69/204 (33%), Gaps = 4/204 (1%)

Query: 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVS 285
             ++A    ++    +L  +P  +    +   L+L+ NLL T    ++     L  L++ 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE 345
             +L+           L  LD S N+L  LP             +           ++  
Sbjct: 64  RAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 346 MASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN 405
           +  L+ L    NEL  LP  +   T        +N    +        L NL  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 406 QIHALPNTFGRLDKLIKLNLEENP 429
            ++ +P  F     L    L  NP
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNP 206

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 2e-16
 Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLASNLLE 267
           S  +V+   R L  LP    +     ++ LS N L      ++     L +LNL      
Sbjct: 11  SHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL-DRAEL 67

Query: 268 TLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
           T     G L  L  LD+S N+L +LP       +L  LD SFNRL  LP      L  LQ
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHF--NELHGLPATIGKLTNLEILNVSSNFTDMK 385
           +L +  N+++ LP  +          +    N        +  L NL+ L +  N   + 
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN--SLY 185

Query: 386 ELPETFGELTNLKELDLSNNQIH 408
            +P+ F     L    L  N   
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 27/101 (26%)

Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA 354
            +S   S +E++     L  LP ++                                L  
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP--------------------------KDTTILHL 38

Query: 355 HFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
             N L+    AT+   T L  LN+        ++  T   L
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL 79

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 1e-13
 Identities = 52/254 (20%), Positives = 79/254 (31%), Gaps = 35/254 (13%)

Query: 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-EVIPDSIAGLVNLEELNLAS-------- 263
                +GL+ +P      A  + + L  N +  V   S     NL  L L S        
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 264 ------------------NLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHC-RSLVE 304
                              L    P +   L  L  L +    L  L   +     +L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL- 362
           L    N L  LP +   +L NL  L +  N+I  +P  +   + SL  L  H N +  + 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 363 PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK 422
           P     L  L  L + +N        E    L  L+ L L++N              L K
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252

Query: 423 LNLEENPMV--IPP 434
                + +   +P 
Sbjct: 253 FRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 8/178 (4%)

Query: 258 ELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSL-VELDASFNRLAYL 315
             +     L+ +P  I      + + + GN++S +P  S   CR+L +    S       
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 316 PTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLE 373
                   +  Q  L    ++R + P +   +  L  L      L  L P     L  L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 374 ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
            L +  N        +TF +L NL  L L  N+I ++P   F  L  L +L L +N +
Sbjct: 133 YLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 66.8 bits (161), Expect = 1e-12
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292
           L  +++SNN L  +P        LE L  + N L  +P+      NLK L V  N L   
Sbjct: 286 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREF 339

Query: 293 PDSISHCRSL 302
           PD       L
Sbjct: 340 PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 253 LVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312
             +LEELN+++N L  LP        L+ L  S N L+ +P+      +L +L   +N L
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ---NLKQLHVEYNPL 336

Query: 313 AYLPTNIGHELVNLQ 327
              P      + +L+
Sbjct: 337 REFPDIPE-SVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE 267
            SLE++++S+  L  LP    R   L  +  S NHL  +P+      NL++L++  N L 
Sbjct: 284 PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELPQ---NLKQLHVEYNPLR 337

Query: 268 TLPDSIGLLDNLKI 281
             PD    +++L++
Sbjct: 338 EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 346 MASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN 405
             SL  L+   N+L  LPA       LE L  S N   + E+PE      NLK+L +  N
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFN--HLAEVPE---LPQNLKQLHVEYN 334

Query: 406 QIHALPNTFGRLDKLIKLN 424
            +   P+    ++ L ++N
Sbjct: 335 PLREFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.5 bits (142), Expect = 3e-10
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
              SL EL+ S N+L  LP         L++L+   N +  +P       +L+ L   +N
Sbjct: 282 LPPSLEELNVSNNKLIELPALPP----RLERLIASFNHLAEVPELPQ---NLKQLHVEYN 334

Query: 358 ELHGLPATIGKLTNLEILN 376
            L   P     + +L + +
Sbjct: 335 PLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.1 bits (141), Expect = 4e-10
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335
             +L+ L+VS NKL  LP        L  L ASFN LA +P        NL++L V  N 
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ----NLKQLHVEYNP 335

Query: 336 IRFLPTSIGEMASLR 350
           +R  P     +  LR
Sbjct: 336 LREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 5e-09
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367
             N  +    ++     +L++L V  NK+  LP        L  L A FN L  +P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ 324

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLK 398
              NL+ L+V  N   ++E P+    + +L+
Sbjct: 325 ---NLKQLHVEYN--PLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 255 NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAY 314
              EL L +  L +LP+      +L+ L  S N L+ LP+     +SL+  + +   L+ 
Sbjct: 39  QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 315 LPTNIGH 321
           LP  + +
Sbjct: 96  LPPLLEY 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 184 EEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL 243
           E   PP   E  E  +  L++   +   +++L++ GL  LPE       L  +  S N L
Sbjct: 14  ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSL 70

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLL 276
             +P+      +L+ L + +N L+ L D   LL
Sbjct: 71  TELPELPQ---SLKSLLVDNNNLKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 275 LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN 334
           L      L+++   LS+LP+   H   L  L AS N L  LP        +L+ LLV  N
Sbjct: 36  LDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQ----SLKSLLVDNN 88

Query: 335 KIRFLP 340
            ++ L 
Sbjct: 89  NLKALS 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRL 417
                L +++    +  LPE      +L+ L  S N +  LP     L
Sbjct: 38  RQAHELELNNL--GLSSLPE---LPPHLESLVASCNSLTELPELPQSL 80

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 348 SLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI 407
               L+ +   L  LP       +LE L  S N   + ELPE      +LK L + NN +
Sbjct: 39  QAHELELNNLGLSSLPELPP---HLESLVASCN--SLTELPE---LPQSLKSLLVDNNNL 90

Query: 408 HALPNTFGRL 417
            AL +    L
Sbjct: 91  KALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE 358
            R   EL+ +   L+ LP    H    L+ L+   N +  LP       SL+ L    N 
Sbjct: 37  DRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPELPQ---SLKSLLVDNNN 89

Query: 359 LHGLPATIGKL 369
           L  L      L
Sbjct: 90  LKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 17/61 (27%)

Query: 391 FGELTNLKELDLSNNQIHALPNTFGRLDKLI-----------------KLNLEENPMVIP 433
                +L+EL++SNN++  LP    RL++LI                 +L++E NP+   
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREF 339

Query: 434 P 434
           P
Sbjct: 340 P 340

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 26/142 (18%)

Query: 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL 339
           ++L ++   L+ L   +     +  LD S NRL  LP  +   L  L+ L    N +  +
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENV 58

Query: 340 PTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399
              +  +  L+ L    N L    A                        +       L  
Sbjct: 59  D-GVANLPRLQELLLCNNRLQQSAA-----------------------IQPLVSCPRLVL 94

Query: 400 LDLSNNQIHALPNTFGRLDKLI 421
           L+L  N +        RL +++
Sbjct: 95  LNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP 293
           R++ L++  L V+   +  L+ +  L+L+ N L  LP ++  L  L++L  S N L  + 
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 294 DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD 353
             +++   L EL    NRL                              +     L  L+
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSA----------------------AIQPLVSCPRLVLLN 96

Query: 354 AHFNELHGLPATIGKLTNL 372
              N L        +L  +
Sbjct: 97  LQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE 393
             +  L   + ++  + HLD   N L  LP  +  L  LE+L  S N  +     +    
Sbjct: 8   KDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---VDGVAN 63

Query: 394 LTNLKELDLSNNQIHALPN--TFGRLDKLIKLNLEENP 429
           L  L+EL L NN++             +L+ LNL+ N 
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 8e-08
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 25/114 (21%)

Query: 214 DLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNL----------------- 256
            L+ + L  L     ++  +  + LS+N L  +P ++A L  L                 
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 257 -----EELNLASNLLETLPD--SIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
                +EL L +N L+       +     L +L++ GN L            ++
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 374 ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP 433
           +L+++    D+  L     +L  +  LDLS+N++ ALP     L  L  L   +N +   
Sbjct: 2   VLHLAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 434 P 434
            
Sbjct: 59  D 59

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 46/250 (18%)

Query: 213 VDLSSRGLRFLPEAFGRIA--GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL--ET 268
           +DL+ +     P+  GR+   G+       + ++           ++ ++L+++++   T
Sbjct: 5   LDLTGK--NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 269 LPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYL--PTNIGHELVN 325
           L   +     L+ L + G +LS  + ++++   +LV L+ S            +      
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 326 LQKL-------------------------------LVPLNKIRFLPTSIGEMASLRHLDA 354
           L +L                                    +   L T +    +L HLD 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 355 HFNELHG--LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN----QIH 408
             + +          +L  L+ L++S  +  + E     GE+  LK L +        + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 409 ALPNTFGRLD 418
            L      L 
Sbjct: 243 LLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 8e-06
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 333 LNKIRFLPTSIGEMAS--LRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET 390
           L      P   G + S  +       + +    A       ++ +++S++  ++  L   
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 391 FGELTNLKELDLSNNQI-HALPNTFGRLDKLIKLN 424
             + + L+ L L   ++   + NT  +   L++LN
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 5e-10
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 20/197 (10%)

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
           ++  D         + NL    + T   +   L+++  +  + + + ++   I +  ++ 
Sbjct: 16  QIFSDD--AFAETIKDNLKKKSV-TDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVT 71

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP 363
           +L  + N+L  +      + +    L     K       + ++ SL       ++++GL 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 364 ATIGKLTNLEILNVSSNFTDMKEL---------------PETFGELTNLKELDLSNNQIH 408
                 +     N  ++ T +  L                     LT L+ L LS N I 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 409 ALPNTFGRLDKLIKLNL 425
            L      L  L  L L
Sbjct: 192 DLRA-LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 24/186 (12%)

Query: 237 SLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI 296
           +L    +     +   L +++++   ++ ++++   I  L N+  L ++GNKL+ +    
Sbjct: 30  NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLA 87

Query: 297 SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL----------------- 339
           +                        +L +L      ++ I  L                 
Sbjct: 88  NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 147

Query: 340 -PTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLK 398
             T +  +  L  L    N++  +   +  LT L+ L +S N   + +L      L NL 
Sbjct: 148 DITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN--HISDLRA-LAGLKNLD 203

Query: 399 ELDLSN 404
            L+L +
Sbjct: 204 VLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286
             +SL +N +  I   +AGL  L+ L L+ N +  L  ++  L NL +L++  
Sbjct: 159 DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 5e-10
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 254 VNLEELNLASNLL--ETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSLVELD 306
           ++++ L++    L      + + LL   +++ +    L+      +  ++    +L EL+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 307 ASFNRL-----AYLPTNIGHELVNLQKL 329
              N L       +   +      +QKL
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 348 SLRHLDAHFNEL--HGLPATIGKLTNLEILNVSSN-FTD--MKELPETFGELTNLKELDL 402
            ++ LD    EL        +  L   +++ +     T+   K++         L EL+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 403 SNNQI-----HALPNTFGRLD-KLIKLNLEENPM 430
            +N++     H +         K+ KL+L+   +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 4e-06
 Identities = 9/89 (10%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 233 LRLMSLSNNHL--EVIPDSIAGLVNLEELNLASNLL-----ETLPDSIGLLDNLKILDVS 285
           ++ + +    L      + +  L   + + L    L     + +  ++ +   L  L++ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 286 GNKLS-----ALPDSISH-CRSLVELDAS 308
            N+L       +   +      + +L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 5e-06
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 15/93 (16%)

Query: 346 MASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSN-FTD--MKELPETFGE-LTN 396
            + LR L     ++       L AT+    +L  L++S+N   D  + +L E+  +    
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 397 LKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
           L++L L +            ++  ++   ++ P
Sbjct: 428 LEQLVLYDIYWS------EEMEDRLQALEKDKP 454

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 370 TNLEILNVSSN-FTD--MKELPETFGELTNLKELDLSNNQI-----HALPNTFGRLD-KL 420
           + L +L ++    +D     L  T     +L+ELDLSNN +       L  +  +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 421 IKLNLEENPM 430
            +L L +   
Sbjct: 429 EQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 7e-05
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 255 NLEELNLASNLL-----ETLPDSIGLLDNLKILDVSGNKLS-----ALPDSISHCRSLVE 304
            L  L LA   +      +L  ++    +L+ LD+S N L       L +S+     L+E
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 305 -LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL 339
            L           +    +   LQ L      +R +
Sbjct: 430 QLVLYDIYW----SEEMEDR--LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 12/115 (10%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 278 NLKILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335
           +++ LD+   +LS     + +   +    +      L    T                  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEAR--------------- 43

Query: 336 IRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKL-----TNLEILNVSSNFTDM 384
            + + +++    +L  L+   NEL  +    + +        ++ L++ +     
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 209 SLEQVDLSSRGL--RFLPEAFGRIAGLRLMSLSNNHL-----EVIPDSIAGLVNLEELNL 261
            ++ +D+    L      E    +   +++ L +  L     + I  ++     L ELNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 262 ASNLL-----ETLPDSIGLLD-NLKILDVSGN 287
            SN L       +   +      ++ L +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.0 bits (136), Expect = 8e-10
 Identities = 32/223 (14%), Positives = 64/223 (28%), Gaps = 48/223 (21%)

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
            + PD    L N  ++    + + T   +   LD +  L   G  ++ +   + +  +L+
Sbjct: 11  VIFPD--PALANAIKIAAGKSNV-TDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLI 66

Query: 304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP 363
            L+   N++  L        +   +L     K       +  + +L        ++  L 
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 364 A----------------------------------------TIGKLTNLEILNVSSNFTD 383
                                                     +  L+ L  L    N   
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-- 184

Query: 384 MKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426
           + ++      L NL E+ L NNQI  +         L  + L 
Sbjct: 185 ISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.9 bits (115), Expect = 4e-07
 Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 230 IAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL 289
           + G+  +S     +  I   +  L NL  L L  N +  L   +  L  +  L++SGN L
Sbjct: 40  LDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97

Query: 290 SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP--------- 340
             +               S       P      L  L   L  +  I  L          
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 341 ---------TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETF 391
                    T +  ++ L  L A  N++  +   +  L NL  +++ +N   + ++    
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN--QISDVSP-L 213

Query: 392 GELTNLKELDLSN 404
              +NL  + L+N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285
              ++ L  +   +N +  I   +A L NL E++L +N +  +   +    NL I+ ++
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 369 LTNLEILNVS-SNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
           L N   +    SN TD      T  +L  +  L      +  +      L+ LI L L++
Sbjct: 18  LANAIKIAAGKSNVTD----TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKD 72

Query: 428 NPMVIPP 434
           N +    
Sbjct: 73  NQITDLA 79

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 234 RLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK-LSA 291
             + L NN +   +P  +  L  L  LN++ N L       G L    +   + NK L  
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Query: 292 LPDSISHC 299
            P  +  C
Sbjct: 307 SP--LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 7e-08
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 386 ELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
            LP+   +L  L  L++S N +       G L +        N  
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 339 LPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
           LP  + ++  L  L+  FN L G     G L   ++   ++N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 264 NLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312
            +  TLP  +  L  L  L+VS N L        + +       + N+ 
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 223 LPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN 264
           LP+   ++  L  +++S N+L         L   +    A+N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 28/199 (14%)

Query: 244 EVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
           ++  D    L    +  L    +     S   LD +  L      + ++ D + +  +L 
Sbjct: 10  QIFTD--TALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLT 65

Query: 304 ELDASFNRLA-------------------YLPTNIGHELVNLQKLLVPLNKIRFLPTSIG 344
           +++ S N+L                     +        +     L   N        + 
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404
            + +L  L+   N +  + A  G  +  ++   S+  TD     +    LT L+ LD+S+
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD----LKPLANLTTLERLDISS 181

Query: 405 NQIHALPNTFGRLDKLIKL 423
           N++  +     +L  L  L
Sbjct: 182 NKVSDISV-LAKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 8e-09
 Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 12/237 (5%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNL-- 265
           S          +  +P    R      +      L VI   + +G  +LE++ ++ N   
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 266 --LETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTN---IG 320
             +E    S     +   ++ + N L   P++  +  +L  L  S   + +LP       
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
            + V L              + +G       L  + N +  +       T L+ LN+S N
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 381 FTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVE 436
               +   + F   +    LD+S  +IH+LP      L KL   +   N   +P +E
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YNLKKLPTLE 242

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 321 HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
            +  +  +  + L  +R  P  +        L+   +    L      +  L  LN+S+N
Sbjct: 17  SKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNN 75

Query: 381 -FTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPMV 431
               + ++     +  NLK L+LS N++ +       +  KL +L L+ N + 
Sbjct: 76  RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 12/151 (7%)

Query: 214 DLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI 273
           +L    +  L     +       +L    L   PD +        LN  S++  TL    
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIE 61

Query: 274 GLLDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL 330
             +  L  L++S N+L     +   +    +L  L+ S N L         + + L++L 
Sbjct: 62  ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW 121

Query: 331 VPLNKI--------RFLPTSIGEMASLRHLD 353
           +  N +         ++         L  LD
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL---EVIPDSIAGLVNLEELNLASN 264
                ++  S     L      I  L  ++LSNN L   + +   +    NL+ LNL+ N
Sbjct: 42  NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 101

Query: 265 LLETLPD-SIGLLDNLKILDVSGNKLSALPDSISHCRSLV 303
            L++  +        L+ L + GN LS      S   S +
Sbjct: 102 ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 5e-08
 Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 8/147 (5%)

Query: 236 MSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDS 295
           + L+   +E         V   EL+L    +  + +    LD    +D S N++  L   
Sbjct: 1   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG- 58

Query: 296 ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP--TSIGEMASLRHLD 353
               R L  L  + NR+  +   +   L +L +L++  N +  L     +  + SL +L 
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 354 AHFNELHGLPA----TIGKLTNLEILN 376
              N +          I K+  + +L+
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 383 DMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
           ++ E    +      +ELDL   +I  + N    LD+   ++  +N
Sbjct: 6   ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN 51

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 369 LTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
                 L++      +  +      L     +D S+N+I  L   F  L +L  L +  N
Sbjct: 17  AVRDRELDLRGY--KIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNN 73

Query: 429 PMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLK 467
            +      + +      +  +    L  L + +  + LK
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 6e-05
 Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 7/127 (5%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV-SGNKLSA 291
            R + L    + VI +  A L   + ++ + N +  L     LL  LK L V +      
Sbjct: 20  DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRI 78

Query: 292 LPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV-----PLNKIRFLPTSIGEM 346
                     L EL  + N L  L        +     L        NK  +    I ++
Sbjct: 79  GEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV 138

Query: 347 ASLRHLD 353
             +R LD
Sbjct: 139 PQVRVLD 145

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.0 bits (112), Expect = 1e-06
 Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLL-----ETLPDSIGLLDNLKILDVSG 286
            L+L +++    + +   +    +++E+ L+ N +       L ++I    +L+I + S 
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 287 NKLSALPDSISHCRS 301
                + D I     
Sbjct: 69  IFTGRVKDEIPEALR 83

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 348 SLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTD--MKELPETFGELTNLKELDLSN 404
           SL+       +   + A + +  +++ + +S N       + L E      +L+  + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 405 NQIHALPN 412
                + +
Sbjct: 69  IFTGRVKD 76

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQI-----HALPNTFGRLDKLIKLNL 425
           +L++  +++   D K +     E  ++KE+ LS N I       L         L     
Sbjct: 9   SLKLDAITTE--DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 426 EENPMVIPPVE 436
            +        E
Sbjct: 67  SDIFTGRVKDE 77

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 367 GKLTNLEILNVSSNF---TDMKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIK 422
            +   L+ L +  N      ++ L      ++ +L  L+L+ N+     +    + ++  
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 329

Query: 423 LNLEEN 428
                 
Sbjct: 330 TRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHL-----EVIPDSIAGLVNLEELNL 261
           GKSL+   +++   + +         ++ + LS N +       + ++IA   +LE    
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 262 ASNLLETLPDSI 273
           +      + D I
Sbjct: 67  SDIFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 233 LRLMSLSNNHLEVIPDSIAGLVN--LEELNLASNLLE-----TLPDSI-GLLDNLKILDV 284
           L    LS      + D+ + L N  L+ L L  N +E     TL   I   + +L  L++
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 285 SGNKLSALPDSISHCRSLVEL 305
           +GN+ S   D +   R +   
Sbjct: 310 NGNRFSEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRL-----AYLPTNIGHELVNLQKLLVP 332
           +LK+  ++     ++   +    S+ E+  S N +      +L  NI     +L+     
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFS 67

Query: 333 LNKIRFLPTSIGEM 346
                 +   I E 
Sbjct: 68  DIFTGRVKDEIPEA 81

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427
             T  E + +      ++++  T   L   K L LS N I  + +    ++ L  L+L  
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGR 79

Query: 428 NPM 430
           N +
Sbjct: 80  NLI 82

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 233 LRLMSLSNN--HLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290
              + L      +E +  +++ L   + L L++N +E +  S+  ++NL+IL +  N + 
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK 83

Query: 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLR 350
            + +  +   +L EL  S+N++A L        + +  +             +  +  L 
Sbjct: 84  KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELD 401
            L    N L+         +                  E    L NLK+LD
Sbjct: 144 DLLLAGNPLYNDYKENNATSEY--------------RIEVVKRLPNLKKLD 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 11/185 (5%)

Query: 236 MSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI--GLLDNLKILDVSGNKLSALP 293
           +  +   L+ IP  I   ++  EL L  N L  +      G L +L  L++  N+L+ + 
Sbjct: 13  VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 294 DSISHCRSLVELDASFNRLAY-LPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRH 351
            +     S ++           +   +   L  L+ L +  N+I  + P S   + SL  
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-AL 410
           L+   N  +           L   +++              ++ +++  DL +++   + 
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAA----RCGAPSKVRDVQIKDLPHSEFKCSS 186

Query: 411 PNTFG 415
            N+ G
Sbjct: 187 ENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 22/176 (12%), Positives = 46/176 (26%), Gaps = 8/176 (4%)

Query: 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNN----HLEVIPDSIAGLVNLEELNLASN 264
               VD + RGL+ +P           + L++N                +   EL     
Sbjct: 9   EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 265 LLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELV 324
                    G     ++                    L  L+   N+++ +       L 
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
           +L  L +  N              LR    +            K+ +++I ++  +
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC--GAPSKVRDVQIKDLPHS 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	516
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.87

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.2e-23  Score=204.56  Aligned_cols=264  Identities=23%  Similarity=0.266  Sum_probs=213.1

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~  286 (516)
                      ..+.+|+++.+++.+|..+.  +++++|+|++|+|+.+++ +|.++++|++|++++|.+..++ ..|..+++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            46778999999999988664  689999999999999975 6899999999999999999884 5788999999999999


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc---ccchhcCCCCCcEEEccCCCCCCcc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF---LPTSIGEMASLRHLDAHFNELHGLP  363 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~~l~  363 (516)
                      |+++.+|..+  ...+..|++..|.+..++...+.....+..++...|....   .+..+..+++|+.+++++|.++.++
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~  166 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  166 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccC
Confidence            9999887654  4678999999999998888888778888888888876552   2446777888999999999988886


Q ss_pred             hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182          364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV  442 (516)
Q Consensus       364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~  442 (516)
                      ..+  +++|+.|++++|... ...+..+..++.++.|++++|.++.++ .++..+++|++|+|++|+|+.++..      
T Consensus       167 ~~~--~~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~------  237 (305)
T d1xkua_         167 QGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG------  237 (305)
T ss_dssp             SSC--CTTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT------
T ss_pred             ccc--CCccCEEECCCCcCC-CCChhHhhccccccccccccccccccccccccccccceeeecccccccccccc------
Confidence            543  578999999998654 344567888899999999999999875 7788899999999999998876532      


Q ss_pred             HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC------ccccccccEEEccCCcccc
Q 010182          443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT------GWLTRSTSWLKTVGENVSG  499 (516)
Q Consensus       443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~------~~~~~~l~~l~l~~N~ls~  499 (516)
                                    +...++++.++|++|+|+......      .....+++.+++++|.+..
T Consensus       238 --------------l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         238 --------------LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             --------------TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             --------------cccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence                          124567888999999988653322      2345678899999998863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-22  Score=205.07  Aligned_cols=264  Identities=20%  Similarity=0.285  Sum_probs=197.6

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .++++|++++++++.+ +.+..+++|++|++++|+|+.++. ++++++|++|++++|.+..+++ ++.+++|+.|++++|
T Consensus        44 ~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~  120 (384)
T d2omza2          44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  120 (384)
T ss_dssp             TTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            5799999999999987 457889999999999999999864 8999999999999999998864 788999999999887


Q ss_pred             CCCCCC----------------------------------------------------------------cccccCCCCc
Q 010182          288 KLSALP----------------------------------------------------------------DSISHCRSLV  303 (516)
Q Consensus       288 ~l~~l~----------------------------------------------------------------~~l~~l~~L~  303 (516)
                      .++.++                                                                .....+++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (384)
T d2omza2         121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE  200 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccc
Confidence            665321                                                                1233456677


Q ss_pred             EEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCC
Q 010182          304 ELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD  383 (516)
Q Consensus       304 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~  383 (516)
                      .+++++|.++.++..  ...++|+.|++++|.++.++ .+..+++|+.|++++|.+++++. +..+++|++|++++|.+ 
T Consensus       201 ~l~l~~n~i~~~~~~--~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l-  275 (384)
T d2omza2         201 SLIATNNQISDITPL--GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI-  275 (384)
T ss_dssp             EEECCSSCCCCCGGG--GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-
T ss_pred             eeeccCCccCCCCcc--cccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCccc-
Confidence            777777777766543  23677888888888777764 56677788888888888777653 66777888888887743 


Q ss_pred             CCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhh
Q 010182          384 MKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERR  463 (516)
Q Consensus       384 ~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l  463 (516)
                       ..++ .+..+..++.+++++|.++.++ .+..+++++.|++++|.+++.+.                     +..++++
T Consensus       276 -~~~~-~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~---------------------l~~l~~L  331 (384)
T d2omza2         276 -SNIS-PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP---------------------VSSLTKL  331 (384)
T ss_dssp             -CCCG-GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG---------------------GGGCTTC
T ss_pred             -CCCC-cccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc---------------------cccCCCC
Confidence             3443 3566677777777777777664 46677788888888887776532                     1245678


Q ss_pred             cccccccccCCCCCCCCccccccccEEEccCCccccccCCCC
Q 010182          464 SMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGN  505 (516)
Q Consensus       464 ~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~~~  505 (516)
                      +.+++++|++++.  +.+...++|++|++++|+|++..+-.+
T Consensus       332 ~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~l~~l~~  371 (384)
T d2omza2         332 QRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLAN  371 (384)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCBCGGGTT
T ss_pred             CEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCCChhhcc
Confidence            8899999988864  456667888999999999888765433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=1.3e-23  Score=207.06  Aligned_cols=249  Identities=26%  Similarity=0.327  Sum_probs=204.0

Q ss_pred             CCccEEEeecCCCC---cchHhhcCCCCCcEEEeec-CCCC-CcchhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcE
Q 010182          208 KSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSN-NHLE-VIPDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKI  281 (516)
Q Consensus       208 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~  281 (516)
                      .+++.|+|+++.+.   .+|..++++++|++|+|++ |.+. .+|..|+++++|++|+|++|.+..++ ..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            36999999999987   5789999999999999987 6776 78999999999999999999999654 46888999999


Q ss_pred             EEeeCCCCC-CCCcccccCCCCcEEeCCCCCCC-cCChhhhhcCCC-CcEEecCCCCCccc-cchhcCCCCCcEEEccCC
Q 010182          282 LDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELVN-LQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFN  357 (516)
Q Consensus       282 L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~-L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n  357 (516)
                      +++++|.+. .+|..+..+++|+.+++++|.+. .+|..... +.. ++.++++.|++... +..+..+. +..++++.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~-l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~  207 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccc-ccccccccccccccccccccccccccc-ccccccccc
Confidence            999999766 66889999999999999999987 56666554 555 48899999998844 45555554 457899888


Q ss_pred             CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCH
Q 010182          358 ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPV  435 (516)
Q Consensus       358 ~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  435 (516)
                      ...+ +|..+..+++++.+++++|.+  ...+..++.+++|+.|+|++|+++ .+|..++.+++|++|+|++|.|++..+
T Consensus       208 ~~~~~~~~~~~~~~~l~~l~~~~~~l--~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         208 MLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEE--CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            7665 677888999999999999954  344567888999999999999999 789999999999999999999984222


Q ss_pred             HHHhchhHHHHHHHhhhhhhHhHHHhhhccccccccc-CCCCCCCC
Q 010182          436 EVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNN-NEGEQMPT  480 (516)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~-i~~~~~~~  480 (516)
                      ..                    ....+++.+++++|+ +.|.++|+
T Consensus       286 ~~--------------------~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         286 QG--------------------GNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             CS--------------------TTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             Cc--------------------ccCCCCCHHHhCCCccccCCCCCC
Confidence            11                    134567888999997 55554553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=4.8e-23  Score=202.18  Aligned_cols=252  Identities=21%  Similarity=0.254  Sum_probs=208.7

Q ss_pred             CCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182          207 GKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV  284 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  284 (516)
                      .+++++|+|++|+|+.++. .|..+++|++|++++|.+..+ |..|.++++|++|++++|+++.+|..  ....+..|++
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRV  107 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhc
Confidence            4679999999999999986 699999999999999999988 66899999999999999999999864  3568999999


Q ss_pred             eCCCCCCCCcc-cccCCCCcEEeCCCCCCC--cCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182          285 SGNKLSALPDS-ISHCRSLVELDASFNRLA--YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       285 s~n~l~~l~~~-l~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      .+|.+..++.. +.....+..++...|...  ......+..+++|+.+++.+|.+..++..+  +++|++|++++|..+.
T Consensus       108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~  185 (305)
T d1xkua_         108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK  185 (305)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCE
T ss_pred             cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCC
Confidence            99999987543 456778888888888643  333445667899999999999999887654  5789999999998887


Q ss_pred             -cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182          362 -LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       362 -l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                       .+..+..++.++.|++++|.+. ...+.++.++++|++|+|++|+|+.+|.++..+++|++|+|++|+|+.++...+..
T Consensus       186 ~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         186 VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CChhHhhcccccccccccccccc-ccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccC
Confidence             4678899999999999999654 22256788899999999999999999999999999999999999999887655442


Q ss_pred             hhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182          441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE  476 (516)
Q Consensus       441 ~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~  476 (516)
                      .             ........++.++|++|.++..
T Consensus       265 ~-------------~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         265 P-------------GYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             S-------------SCCTTSCCCSEEECCSSSSCGG
T ss_pred             c-------------chhcccCCCCEEECCCCcCccC
Confidence            0             1112345678899999988643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=9.4e-22  Score=198.29  Aligned_cols=256  Identities=23%  Similarity=0.252  Sum_probs=215.8

Q ss_pred             CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcc----------------
Q 010182          207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP----------------  270 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~----------------  270 (516)
                      .++|++|++++|+++.++. ++++++|++|++++|.+..++ .++.+++|+.|+++++.++.++                
T Consensus        65 L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (384)
T d2omza2          65 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  142 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            4789999999999999975 999999999999999999885 4889999999999988765321                


Q ss_pred             ------------------------------------------------hhhcCCCCCcEEEeeCCCCCCCCcccccCCCC
Q 010182          271 ------------------------------------------------DSIGLLDNLKILDVSGNKLSALPDSISHCRSL  302 (516)
Q Consensus       271 ------------------------------------------------~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L  302 (516)
                                                                      ..+..+++++.+++++|.++.++. ...+++|
T Consensus       143 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L  221 (384)
T d2omza2         143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNL  221 (384)
T ss_dssp             EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTC
T ss_pred             cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccCCC
Confidence                                                            123456789999999999988743 5678899


Q ss_pred             cEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCC
Q 010182          303 VELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT  382 (516)
Q Consensus       303 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~  382 (516)
                      ++|++++|.++.++.  +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+..++.+.+..|.+
T Consensus       222 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l  297 (384)
T d2omza2         222 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL  297 (384)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred             CEEECCCCCCCCcch--hhcccccchhccccCccCCCC-cccccccCCEeeccCcccCCCCc-ccccccccccccccccc
Confidence            999999999998763  346899999999999999875 47888999999999999999864 77889999999999954


Q ss_pred             CCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhh
Q 010182          383 DMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEER  462 (516)
Q Consensus       383 ~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  462 (516)
                        ..+ ..+..+++++.|++++|++++++ .+..+++|++|++++|+|+.++.                     +...++
T Consensus       298 --~~~-~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~~---------------------l~~l~~  352 (384)
T d2omza2         298 --EDI-SPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS---------------------LANLTN  352 (384)
T ss_dssp             --SCC-GGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCGG---------------------GGGCTT
T ss_pred             --ccc-cccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCChh---------------------HcCCCC
Confidence              444 35788999999999999999986 48899999999999999987531                     124578


Q ss_pred             hcccccccccCCCCCCCCccccccccEEEccCCc
Q 010182          463 RSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN  496 (516)
Q Consensus       463 l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~  496 (516)
                      |+.+++++|++++..  .+...++|+.|++++|.
T Consensus       353 L~~L~l~~N~l~~l~--~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         353 INWLSAGHNQISDLT--PLANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCEEECCSSCCCBCG--GGTTCTTCSEEECCCEE
T ss_pred             CCEEECCCCcCCCCh--hhccCCCCCEeeCCCCc
Confidence            999999999999764  36667899999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-22  Score=194.63  Aligned_cols=263  Identities=23%  Similarity=0.263  Sum_probs=211.4

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEee-CC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVS-GN  287 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls-~n  287 (516)
                      ..+++++++++.+|..+.  +++++|+|++|.|+.+|. +|.++++|++|++++|.+..++. .+..+..+..+... .+
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            457888899999987654  679999999999999865 79999999999999999997765 56678889998875 45


Q ss_pred             CCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc-ch
Q 010182          288 KLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL-PA  364 (516)
Q Consensus       288 ~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~  364 (516)
                      .++.+ +..+.++++|++|++++|.+..++...+....+|+.+++.+|.++.++. .+..+++|++|++++|.++.+ +.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            77777 5668889999999999999998888888789999999999999998864 577889999999999999986 45


Q ss_pred             hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhH
Q 010182          365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVG  443 (516)
Q Consensus       365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  443 (516)
                      .+..+++|+.+++++|.+. ...|..|..+++|++|++++|+++.++ .++..+++|++|++++|++...-...      
T Consensus       172 ~f~~l~~L~~l~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~------  244 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR------  244 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH------
T ss_pred             hhccccccchhhhhhcccc-ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch------
Confidence            7889999999999999665 334788999999999999999999886 78999999999999999997542110      


Q ss_pred             HHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccc
Q 010182          444 AVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSG  499 (516)
Q Consensus       444 ~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~  499 (516)
                               |+     ...++......+++.+..+..+   ......++..+.++|
T Consensus       245 ---------~l-----~~~l~~~~~~~~~~~C~~p~~l---~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         245 ---------PL-----WAWLQKFRGSSSEVPCSLPQRL---AGRDLKRLAANDLQG  283 (284)
T ss_dssp             ---------HH-----HHHHHHCCSEECCCBEEESGGG---TTCBGGGSCGGGSCC
T ss_pred             ---------HH-----HHHHHhCcCCCCceEeCCchHH---cCCccccCCHHHCCC
Confidence                     00     0111234556667776544433   234566677777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=4.9e-23  Score=202.91  Aligned_cols=247  Identities=26%  Similarity=0.320  Sum_probs=205.4

Q ss_pred             CCCcEEEeecCCCC---CcchhhcCCCCccEEEeeC-CCCC-CcchhhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcE
Q 010182          231 AGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLAS-NLLE-TLPDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVE  304 (516)
Q Consensus       231 ~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~  304 (516)
                      .+++.|+|+++.+.   .+|..++++++|++|+|++ |.++ .+|..|+++++|++|+|++|++..+ +..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            46899999999887   4789999999999999997 7777 8999999999999999999999865 556788999999


Q ss_pred             EeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCC-cEEEccCCCCCC-cchhhCCCCCCcEEEcccCC
Q 010182          305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASL-RHLDAHFNELHG-LPATIGKLTNLEILNVSSNF  381 (516)
Q Consensus       305 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L-~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~  381 (516)
                      ++++.|.+.......+..+++|+.+++++|.+. .+|..+..+..+ +.+++++|++++ .+..+..+.. ..+++..+.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999999876544444557999999999999987 778888888765 889999999987 4566666554 479998885


Q ss_pred             CCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCC-CCHHHHhchhHHHHHHHhhhhhhHhHHH
Q 010182          382 TDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVI-PPVEVVKEGVGAVKTFMAKRWLDILLEE  460 (516)
Q Consensus       382 ~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~  460 (516)
                      .. ..+|..+..+++|+.+++++|.++..+..+..+++|+.|+|++|++++ +|..                    +...
T Consensus       209 ~~-~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~--------------------l~~L  267 (313)
T d1ogqa_         209 LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG--------------------LTQL  267 (313)
T ss_dssp             EE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG--------------------GGGC
T ss_pred             cc-ccccccccccccccccccccccccccccccccccccccccCccCeecccCChH--------------------HhCC
Confidence            43 556788889999999999999999877788999999999999999984 3332                    2245


Q ss_pred             hhhcccccccccCCCCCCCCccccccccEEEccCCc-cccc
Q 010182          461 ERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN-VSGI  500 (516)
Q Consensus       461 ~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~-ls~~  500 (516)
                      ++++.++|++|+++|.. |.+....++..+++++|+ +.|.
T Consensus       268 ~~L~~L~Ls~N~l~g~i-P~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         268 KFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             TTCCEEECCSSEEEEEC-CCSTTGGGSCGGGTCSSSEEEST
T ss_pred             CCCCEEECcCCcccccC-CCcccCCCCCHHHhCCCccccCC
Confidence            78899999999999865 456667889999999998 5553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=188.25  Aligned_cols=198  Identities=30%  Similarity=0.326  Sum_probs=130.8

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .+.++++++++++.+|..+.  ++|++|+|++|.|+.++ ..|.++++|++|+|++|.|+.++. ++.+++|++|++++|
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccc
Confidence            44556666666666665443  45666777776666664 356666666666666666666543 445666666666666


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcch-hh
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TI  366 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l  366 (516)
                      +++.++..+..+++|+.|++++|.+..++...+                       ..+.++++|++++|.++.++. .+
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------------~~l~~l~~L~l~~n~l~~l~~~~~  144 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-----------------------RGLGELQELYLKGNELKTLPPGLL  144 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTT-----------------------TTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccccccccccccccccccccccccceeecccc-----------------------ccccccccccccccccceeccccc
Confidence            666655555556666666666665555444443                       344455555666665555433 44


Q ss_pred             CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182          367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP  433 (516)
Q Consensus       367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~  433 (516)
                      ..+++|+.|++++|.+. ...+..+..+++|++|+|++|+|+.+|..+..+++|+.|+|++|++...
T Consensus       145 ~~l~~l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccchhccccccccc-ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            55667777777777543 2223457788999999999999999998888899999999999998754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=188.07  Aligned_cols=175  Identities=26%  Similarity=0.234  Sum_probs=154.2

Q ss_pred             hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182          206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV  284 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L  284 (516)
                      ..+++++|+|++|.|+.++. .|..+++|++|+|++|.|+.++. ++.+++|++|++++|+++.++..+..+++|++|++
T Consensus        29 lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred             cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            34689999999999998875 69999999999999999998864 67899999999999999999888999999999999


Q ss_pred             eCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc
Q 010182          285 SGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL  362 (516)
Q Consensus       285 s~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l  362 (516)
                      ++|.+..++ ..+..+.+++.|++++|.++.++...+..+++|+.+++++|+++.++. .+..+++|++|+|++|+++.+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~l  187 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCccc
Confidence            999998774 456678999999999999999999888888999999999999987764 467788888888888888888


Q ss_pred             chhhCCCCCCcEEEcccCC
Q 010182          363 PATIGKLTNLEILNVSSNF  381 (516)
Q Consensus       363 ~~~l~~l~~L~~L~L~~n~  381 (516)
                      |..+..+++|+.|+|++|.
T Consensus       188 p~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCC
T ss_pred             ChhHCCCCCCCEEEecCCC
Confidence            8877788888888888884

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.9e-21  Score=185.83  Aligned_cols=246  Identities=24%  Similarity=0.242  Sum_probs=203.2

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCC-CC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDAS-FN  310 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~-~n  310 (516)
                      ..++.++++++.+|..+.  +++++|+|++|+|+.+|. .|..+++|++|++++|.+..++ ..+..+..++.+... .+
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            446788888999987664  579999999999999986 6899999999999999999764 445667888888764 66


Q ss_pred             CCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-
Q 010182          311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-  387 (516)
Q Consensus       311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-  387 (516)
                      .++.++...+.++++|+.|++++|.+..++. .+..+.+|+.+++++|.++.++ ..+..+++|+.|++++|.+  ..+ 
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l--~~l~  169 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSVP  169 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEEC
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc--cccc
Confidence            7888988888889999999999999987654 5677889999999999999985 5788899999999999965  444 


Q ss_pred             chhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhccc
Q 010182          388 PETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSML  466 (516)
Q Consensus       388 ~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  466 (516)
                      +..+.++++|+.+++++|+++.+ |..|..+++|++|++++|.+...+...+.                   ....++.+
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~-------------------~~~~L~~L  230 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-------------------PLRALQYL  230 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-------------------TCTTCCEE
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccc-------------------cccccCEE
Confidence            46788999999999999999987 58999999999999999999999887654                   34568899


Q ss_pred             ccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182          467 KLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG  503 (516)
Q Consensus       467 ~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~  503 (516)
                      ++++|.+.|... ..|....+..+....+++++..|.
T Consensus       231 ~l~~N~l~C~C~-~~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         231 RLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             ECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESG
T ss_pred             EecCCCCCCCcc-chHHHHHHHhCcCCCCceEeCCch
Confidence            999999998754 344444455566667777776544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=5.1e-20  Score=172.55  Aligned_cols=202  Identities=23%  Similarity=0.337  Sum_probs=159.4

Q ss_pred             EeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCC
Q 010182          214 DLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP  293 (516)
Q Consensus       214 ~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~  293 (516)
                      +++.+.++.+. .+..+.+|+.|++.+|.|+.+ .++..+++|++|++++|.++.+.. +..+++|+++++++|.++.++
T Consensus        25 ~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             HhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc
Confidence            44455555432 345567888888888888887 468888888888888888887754 778888888888888888773


Q ss_pred             cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCc
Q 010182          294 DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLE  373 (516)
Q Consensus       294 ~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~  373 (516)
                       .+..+++|+.+++++|....+...  ...+.+..+.++.+.+... ..+..+++|++|++++|.++..+. +.++++|+
T Consensus       102 -~l~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~  176 (227)
T d1h6ua2         102 -AIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLT  176 (227)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGGG--TTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             -cccccccccccccccccccccchh--ccccchhhhhchhhhhchh-hhhccccccccccccccccccchh-hcccccce
Confidence             577888889998888887665442  3478888888888887755 346778889999999999887654 78899999


Q ss_pred             EEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182          374 ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       374 ~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~  427 (516)
                      .|++++|.+  .+++ .++++++|++|+|++|+|++++ .+..+++|+.|++++
T Consensus       177 ~L~Ls~n~l--~~l~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         177 TLKADDNKI--SDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSCC--CCCG-GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             ecccCCCcc--CCCh-hhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            999999954  4554 4788999999999999999997 488999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=5.7e-18  Score=167.71  Aligned_cols=268  Identities=27%  Similarity=0.308  Sum_probs=171.6

Q ss_pred             HHHHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcC
Q 010182          196 EEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGL  275 (516)
Q Consensus       196 ~~~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~  275 (516)
                      ..+...++++...++++|||++++++.+|+.   .++|++|++++|+|+.+|..   +.+|+.|++++|.++.++..   
T Consensus        26 ~~~~~~l~~c~~~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---   96 (353)
T d1jl5a_          26 EMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---   96 (353)
T ss_dssp             HHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---
Confidence            3344455565556899999999999999863   57899999999999999865   45899999999999988642   


Q ss_pred             CCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhh------------------hhcCCCCcEEecCCCCCc
Q 010182          276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNI------------------GHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       276 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~------------------~~~l~~L~~L~L~~n~l~  337 (516)
                      .+.|++|++++|.+..+|. +..+++|++|++++|.+...+...                  ...+..++.+++..|...
T Consensus        97 p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            2569999999999999975 678999999999999876544321                  122445555555555443


Q ss_pred             cccc-------------------hhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCcc
Q 010182          338 FLPT-------------------SIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLK  398 (516)
Q Consensus       338 ~l~~-------------------~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~  398 (516)
                      ..+.                   .+..++.|+.+++++|....++..   ..++..+.+..+.+.  ..+.   ....+.
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~---~~~l~~~~~~~~~~~--~~~~---~~~~l~  247 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLT--DLPE---LPQSLT  247 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCS--CCCC---CCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc--cccc---cccccc
Confidence            2211                   122334444454444444433321   223334444443221  1111   112233


Q ss_pred             EEeccCC--------------------CCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhH
Q 010182          399 ELDLSNN--------------------QIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILL  458 (516)
Q Consensus       399 ~L~L~~n--------------------~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  458 (516)
                      ..++..+                    .+..++   ..+++|++|+|++|.|+.++.                       
T Consensus       248 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~---~~~~~L~~L~Ls~N~l~~lp~-----------------------  301 (353)
T d1jl5a_         248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPA-----------------------  301 (353)
T ss_dssp             EEECCSSCCSEESCCCTTCCEEECCSSCCSEEC---CCCTTCCEEECCSSCCSCCCC-----------------------
T ss_pred             ccccccccccccccccchhcccccccCcccccc---ccCCCCCEEECCCCccCcccc-----------------------
Confidence            3333333                    322222   235789999999999987653                       


Q ss_pred             HHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCCCCCCCCCc
Q 010182          459 EEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGGNSPRDPC  511 (516)
Q Consensus       459 ~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~~~~~~d~~  511 (516)
                      ..++++.|+|++|+|+..  +.  ...+++.|++++|+++..-..+.+-++.+
T Consensus       302 ~~~~L~~L~L~~N~L~~l--~~--~~~~L~~L~L~~N~L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         302 LPPRLERLIASFNHLAEV--PE--LPQNLKQLHVEYNPLREFPDIPESVEDLR  350 (353)
T ss_dssp             CCTTCCEEECCSSCCSCC--CC--CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             ccCCCCEEECCCCcCCcc--cc--ccCCCCEEECcCCcCCCCCccccccCeeE
Confidence            135688999999999854  33  24679999999999986533333333333

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.1e-17  Score=156.41  Aligned_cols=186  Identities=19%  Similarity=0.334  Sum_probs=161.8

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .+|+.|++.+|+++.++ .+..+++|++|++++|.+..+. .+..+++|+++++++|.++.++ .+..+++|+.+++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-cccccccccccccccc
Confidence            57999999999999984 5899999999999999999875 3899999999999999999886 4788999999999999


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      ....+ ..+...+.+..+.++++.+.....  +...++|+.|++++|.+...+ .+.++++|++|++++|.+++++. +.
T Consensus       118 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~  192 (227)
T d1h6ua2         118 QITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-LA  192 (227)
T ss_dssp             CCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred             ccccc-chhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhcccccceecccCCCccCCChh-hc
Confidence            88776 346678899999999998876544  335899999999999998764 48889999999999999999865 78


Q ss_pred             CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccC
Q 010182          368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN  404 (516)
Q Consensus       368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~  404 (516)
                      .+++|++|+|++|.  +.+++ .++++++|+.|++++
T Consensus       193 ~l~~L~~L~Ls~N~--lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         193 SLPNLIEVHLKNNQ--ISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GCTTCCEEECTTSC--CCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCCCCCEEECcCCc--CCCCc-ccccCCCCCEEEeeC
Confidence            89999999999995  45665 488999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7.4e-18  Score=155.72  Aligned_cols=161  Identities=24%  Similarity=0.322  Sum_probs=79.8

Q ss_pred             CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC
Q 010182          209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK  288 (516)
Q Consensus       209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~  288 (516)
                      ++++|+++++.++.++. +..+++|++|++++|.++.++ .++.+++|++|++++|+|+.++ .+..+++|+.|++++|.
T Consensus        47 ~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC
T ss_pred             CccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccccc
Confidence            45556666665555432 455556666666666555553 2455555666666555555554 24555555555555555


Q ss_pred             CCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCC
Q 010182          289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK  368 (516)
Q Consensus       289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~  368 (516)
                      +..+ ..+..+++++.+++++|.++..+.  ...+++|+.+++++|.+..++ .+.++++|++|++++|.+++++ .+..
T Consensus       124 ~~~~-~~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~  198 (210)
T d1h6ta2         124 ISDI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLR-ALAG  198 (210)
T ss_dssp             CCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG-GGTT
T ss_pred             cccc-cccccccccccccccccccccccc--ccccccccccccccccccccc-cccCCCCCCEEECCCCCCCCCh-hhcC
Confidence            5444 234445555555555555543321  112444444444444444432 2344444444444444444443 2444


Q ss_pred             CCCCcEEEc
Q 010182          369 LTNLEILNV  377 (516)
Q Consensus       369 l~~L~~L~L  377 (516)
                      +++|++|+|
T Consensus       199 l~~L~~L~L  207 (210)
T d1h6ta2         199 LKNLDVLEL  207 (210)
T ss_dssp             CTTCSEEEE
T ss_pred             CCCCCEEEc
Confidence            444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.1e-17  Score=153.13  Aligned_cols=162  Identities=22%  Similarity=0.381  Sum_probs=94.2

Q ss_pred             CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCC
Q 010182          229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS  308 (516)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~  308 (516)
                      .+.+++.|++++|.+..+ +++..+++|++|++++|+++.++. ++.+++|++|++++|.+..++ .+.++++|+.|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccc
Confidence            345666666666666655 345566666666666666665543 556666666666666655553 34555555555555


Q ss_pred             CCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcc
Q 010182          309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP  388 (516)
Q Consensus       309 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~  388 (516)
                      +|.+..++                         .+..+++|+.|++++|++..++ .+..+++|+.|++.+|.+  .+++
T Consensus       115 ~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l--~~l~  166 (199)
T d2omxa2         115 NNQITDID-------------------------PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQV--TDLK  166 (199)
T ss_dssp             SSCCCCCG-------------------------GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC--CCCG
T ss_pred             cccccccc-------------------------ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccc--cCCc
Confidence            55544332                         2444555666666666655543 355566666666666633  3333


Q ss_pred             hhhcCCCCccEEeccCCCCCCchhhhcCCCcccEE
Q 010182          389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKL  423 (516)
Q Consensus       389 ~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L  423 (516)
                       .++++++|++|++++|+|++++ .+..+++|++|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence             3566667777777777776664 45666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=8.8e-18  Score=155.21  Aligned_cols=165  Identities=24%  Similarity=0.345  Sum_probs=97.0

Q ss_pred             CCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCC
Q 010182          230 IAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASF  309 (516)
Q Consensus       230 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~  309 (516)
                      +.+|+.|++++|.++.++ ++..+++|++|++++|.|+.++. ++.+++|++|++++|+++.++ .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccccccccccccccc
Confidence            456666777777666653 35666666777776666666653 456666666666666666554 355555666666655


Q ss_pred             CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcch
Q 010182          310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE  389 (516)
Q Consensus       310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~  389 (516)
                      |.+..++                         .+..++.++.+++++|.+++.+ .+..+++|+.+++++|.+  .+++ 
T Consensus       122 ~~~~~~~-------------------------~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l--~~i~-  172 (210)
T d1h6ta2         122 NGISDIN-------------------------GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI--SDIV-  172 (210)
T ss_dssp             SCCCCCG-------------------------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC--CCCG-
T ss_pred             ccccccc-------------------------cccccccccccccccccccccc-cccccccccccccccccc--cccc-
Confidence            5554432                         3344455555555555555432 244455666666666633  3333 


Q ss_pred             hhcCCCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182          390 TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE  427 (516)
Q Consensus       390 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~  427 (516)
                      .++++++|++|+|++|+|++++ .+..+++|++|+|++
T Consensus       173 ~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            2556666666666666666665 466666777766653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2.3e-17  Score=150.99  Aligned_cols=160  Identities=23%  Similarity=0.371  Sum_probs=134.9

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      .++++|++++++++.+. .+..+++|++|++++|.++.++. ++++++|++|++++|.+..++. +..+++|+.|++++|
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            67999999999999885 48889999999999999998864 8999999999999999998874 889999999999999


Q ss_pred             CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182          288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG  367 (516)
Q Consensus       288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~  367 (516)
                      .+..+ ..+..+++|+.|++++|.+..++.  +..+++|+.|++.+|+++.++ .++++++|++|++++|++++++ .+.
T Consensus       117 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~  191 (199)
T d2omxa2         117 QITDI-DPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLA  191 (199)
T ss_dssp             CCCCC-GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGG
T ss_pred             ccccc-cccchhhhhHHhhhhhhhhccccc--ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-ccc
Confidence            88876 457789999999999999887653  335788888888888888774 4777788888888888887775 466


Q ss_pred             CCCCCcEE
Q 010182          368 KLTNLEIL  375 (516)
Q Consensus       368 ~l~~L~~L  375 (516)
                      .+++|+.|
T Consensus       192 ~L~~L~~L  199 (199)
T d2omxa2         192 KLTNLESL  199 (199)
T ss_dssp             GCTTCSEE
T ss_pred             CCCCCCcC
Confidence            77777765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.1e-17  Score=152.46  Aligned_cols=214  Identities=21%  Similarity=0.208  Sum_probs=167.5

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-c-hhhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-P-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~-~~l~~l~~L~~L~Ls~  286 (516)
                      -+.+++++.+++.+|..+.  +++++|++++|.|+.++. .|.++++|++|++++|.+... + ..|..+++++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            4689999999999987553  689999999999998865 689999999999999988754 3 3678899999999875


Q ss_pred             -CCCCCC-CcccccCCCCcEEeCCCCCCCcCChhh-hhcCCCCcEEecCCCCCccccc-hhcCC-CCCcEEEccCCCCCC
Q 010182          287 -NKLSAL-PDSISHCRSLVELDASFNRLAYLPTNI-GHELVNLQKLLVPLNKIRFLPT-SIGEM-ASLRHLDAHFNELHG  361 (516)
Q Consensus       287 -n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~l~~-~l~~l-~~L~~L~Ls~n~l~~  361 (516)
                       |.+..+ +..+.++++|+++++++|.+...+... ...+..+..+...++.+..++. .+..+ ..++.|++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             567655 456788999999999999988765433 3345666666777778887654 34444 478999999999999


Q ss_pred             cchhhCCCCCCcEEE-cccCCCCCCCcch-hhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEeccc
Q 010182          362 LPATIGKLTNLEILN-VSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEE  427 (516)
Q Consensus       362 l~~~l~~l~~L~~L~-L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~  427 (516)
                      ++.......++..+. +++|.  +..+|. .|.++++|++|+|++|+|+.+| ..|.++++|+.|++.+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~--l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNN--LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTT--CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccchhhhccccccccc--cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            877666667766664 56664  456654 4788999999999999999997 5688888888877754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7e-19  Score=180.44  Aligned_cols=278  Identities=18%  Similarity=0.160  Sum_probs=153.2

Q ss_pred             CCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCC-----cchhhcC-CCCccEEEeeCCCCCC-----cch
Q 010182          208 KSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEV-----IPDSIAG-LVNLEELNLASNLLET-----LPD  271 (516)
Q Consensus       208 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~-----l~~~l~~-l~~L~~L~Ls~n~l~~-----l~~  271 (516)
                      +++++|+|++|+++     .++..+..+++|+.|+|++|.|+.     +...+.. ..+|++|++++|.++.     ++.
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~  106 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  106 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccc
Confidence            67788888888876     345567778888888888888762     2333332 3468888888888873     345


Q ss_pred             hhcCCCCCcEEEeeCCCCCCC-----Cc-----------------------------ccccCCCCcEEeCCCCCCCc---
Q 010182          272 SIGLLDNLKILDVSGNKLSAL-----PD-----------------------------SISHCRSLVELDASFNRLAY---  314 (516)
Q Consensus       272 ~l~~l~~L~~L~Ls~n~l~~l-----~~-----------------------------~l~~l~~L~~L~L~~n~l~~---  314 (516)
                      .+..+++|++|++++|.++..     ..                             .+.....++.++++++....   
T Consensus       107 ~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~  186 (460)
T d1z7xw1         107 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  186 (460)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             hhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccccc
Confidence            567788888888888765410     00                             01223345555554443210   


Q ss_pred             --------------------------CC----hhhhhcCCCCcEEecCCCCCcc------ccchhcCCCCCcEEEccCCC
Q 010182          315 --------------------------LP----TNIGHELVNLQKLLVPLNKIRF------LPTSIGEMASLRHLDAHFNE  358 (516)
Q Consensus       315 --------------------------l~----~~~~~~l~~L~~L~L~~n~l~~------l~~~l~~l~~L~~L~Ls~n~  358 (516)
                                                ..    .........++.+++.+|.+..      +.........++.+++++|.
T Consensus       187 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~  266 (460)
T d1z7xw1         187 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  266 (460)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccc
Confidence                                      00    0011224455666666655431      11222334567777777776


Q ss_pred             CCC-----cchhhCCCCCCcEEEcccCCCCCCCcc---hhh-cCCCCccEEeccCCCCCCc-----hhhhcCCCcccEEe
Q 010182          359 LHG-----LPATIGKLTNLEILNVSSNFTDMKELP---ETF-GELTNLKELDLSNNQIHAL-----PNTFGRLDKLIKLN  424 (516)
Q Consensus       359 l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~---~~l-~~l~~L~~L~L~~n~i~~l-----p~~l~~l~~L~~L~  424 (516)
                      +..     +...+...+.++.+++++|.++..++.   ..+ .....|+.+++++|.++..     ...+..+++|++|+
T Consensus       267 i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~  346 (460)
T d1z7xw1         267 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ  346 (460)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhh
Confidence            654     223445566677777777654322221   111 2334677777777776632     23445566777777


Q ss_pred             cccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC----ccccccccEEEccCCcccc
Q 010182          425 LEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT----GWLTRSTSWLKTVGENVSG  499 (516)
Q Consensus       425 L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~----~~~~~~l~~l~l~~N~ls~  499 (516)
                      |++|++++.+...+.+++.              .....++.|+|++|+|++....+    ....++++.|++++|+|+.
T Consensus       347 Ls~N~i~~~g~~~l~~~l~--------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         347 ISNNRLEDAGVRELCQGLG--------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CCSSBCHHHHHHHHHHHHT--------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             eeeecccCcccchhhhhhh--------------cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            7777765332222211100              01234666777777776543222    2234567777777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=149.64  Aligned_cols=201  Identities=22%  Similarity=0.259  Sum_probs=159.9

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCC-C-CcccccCCCCcEEeCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSA-L-PDSISHCRSLVELDASF  309 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~-l-~~~l~~l~~L~~L~L~~  309 (516)
                      .+.++.++..++.+|..+.  +++++|++++|.|+.+|. .|.++++|++|++++|.+.. + +..+..+++++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            3688999999999987663  589999999999999886 68899999999999998875 3 34578899999998764


Q ss_pred             -CCCCcCChhhhhcCCCCcEEecCCCCCccccc--hhcCCCCCcEEEccCCCCCCcch-hhCCC-CCCcEEEcccCCCCC
Q 010182          310 -NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT--SIGEMASLRHLDAHFNELHGLPA-TIGKL-TNLEILNVSSNFTDM  384 (516)
Q Consensus       310 -n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l-~~L~~L~L~~n~~~~  384 (516)
                       |.+...+...+.++++|+.+++.+|.+...+.  .+..+..+..+...++.+..++. .+..+ ..++.|++++|.+  
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l--  165 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--  165 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC--
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc--
Confidence             67888888888889999999999999986643  34455666677777778887643 44444 4789999999954  


Q ss_pred             CCcchhhcCCCCccEE-eccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHH
Q 010182          385 KELPETFGELTNLKEL-DLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEV  437 (516)
Q Consensus       385 ~~l~~~l~~l~~L~~L-~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~  437 (516)
                      ..++.......++.++ .+++|+|+.+| ..|..+++|++|+|++|+|+.++...
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence            4565555556666555 57888999997 56899999999999999999887543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=2.6e-15  Score=148.18  Aligned_cols=242  Identities=29%  Similarity=0.323  Sum_probs=168.7

Q ss_pred             CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182          208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN  287 (516)
Q Consensus       208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n  287 (516)
                      ++|++|++++|+|+.+|..   +.+|+.|++++|.++.++. +  .+.|++|++++|.+..+|. ++.+++|++|++++|
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhh-h--ccccccccccccccccccc-hhhhccceeeccccc
Confidence            6899999999999999864   4689999999999997753 1  2469999999999999985 678999999999998


Q ss_pred             CCCCCC-------------------cccccCCCCcEEeCCCCCCCcCChh------------------hhhcCCCCcEEe
Q 010182          288 KLSALP-------------------DSISHCRSLVELDASFNRLAYLPTN------------------IGHELVNLQKLL  330 (516)
Q Consensus       288 ~l~~l~-------------------~~l~~l~~L~~L~L~~n~l~~l~~~------------------~~~~l~~L~~L~  330 (516)
                      .+...+                   ..+..++.++.+++++|.....+..                  ....++.|+.++
T Consensus       131 ~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~  210 (353)
T d1jl5a_         131 SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY  210 (353)
T ss_dssp             CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             cccccccccccccchhhccccccccccccccccceecccccccccccccccccccccccccccccccccccccccccccc
Confidence            766332                   2245567778888887765432211                  123467899999


Q ss_pred             cCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCC---------------CCCCcchhhcCCC
Q 010182          331 VPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT---------------DMKELPETFGELT  395 (516)
Q Consensus       331 L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~---------------~~~~l~~~l~~l~  395 (516)
                      +.+|....++..   ..++..+.+..+.+...+...   ..+...++..+.+               ....++.....++
T Consensus       211 l~~n~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T d1jl5a_         211 ADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP  284 (353)
T ss_dssp             CCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred             cccccccccccc---ccccccccccccccccccccc---ccccccccccccccccccccchhcccccccCccccccccCC
Confidence            999988766543   345777778777776643321   2233333322210               0011122234467


Q ss_pred             CccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCC
Q 010182          396 NLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEG  475 (516)
Q Consensus       396 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~  475 (516)
                      +|++|+|++|+|+.+|.   .+++|+.|+|++|.|+.++..                       ..+++.+++++|+++.
T Consensus       285 ~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~-----------------------~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         285 SLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL-----------------------PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCC-----------------------CTTCCEEECCSSCCSS
T ss_pred             CCCEEECCCCccCcccc---ccCCCCEEECCCCcCCccccc-----------------------cCCCCEEECcCCcCCC
Confidence            89999999999999985   367899999999999877531                       2367889999999985


Q ss_pred             CCCCCccccccccEEEc
Q 010182          476 EQMPTGWLTRSTSWLKT  492 (516)
Q Consensus       476 ~~~~~~~~~~~l~~l~l  492 (516)
                      .  |..  ..+++.|.+
T Consensus       339 l--p~~--~~~L~~L~~  351 (353)
T d1jl5a_         339 F--PDI--PESVEDLRM  351 (353)
T ss_dssp             C--CCC--CTTCCEEEC
T ss_pred             C--Ccc--ccccCeeEC
Confidence            4  322  334666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=4.3e-17  Score=162.03  Aligned_cols=228  Identities=19%  Similarity=0.232  Sum_probs=133.9

Q ss_pred             CCCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCC-----------cchhhcCCCCccEEEeeCCCCCC--
Q 010182          207 GKSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEV-----------IPDSIAGLVNLEELNLASNLLET--  268 (516)
Q Consensus       207 ~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~-----------l~~~l~~l~~L~~L~Ls~n~l~~--  268 (516)
                      ...++.|+|++|.+.     .+...+..+++|+.|+++++....           +...+..+++|+.|+|++|.++.  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            366778888877765     334456667778888887765442           22345566777788887777763  


Q ss_pred             ---cchhhcCCCCCcEEEeeCCCCCC-----CCcc---------cccCCCCcEEeCCCCCCCcCCh----hhhhcCCCCc
Q 010182          269 ---LPDSIGLLDNLKILDVSGNKLSA-----LPDS---------ISHCRSLVELDASFNRLAYLPT----NIGHELVNLQ  327 (516)
Q Consensus       269 ---l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~---------l~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~  327 (516)
                         +...+..+++|++|++++|.++.     +...         ....+.|+.+++++|.++.-..    .......+|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               23345566777777777776541     1111         1235567777777776652211    1123456677


Q ss_pred             EEecCCCCCcc------ccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcc---hhhcC
Q 010182          328 KLLVPLNKIRF------LPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELP---ETFGE  393 (516)
Q Consensus       328 ~L~L~~n~l~~------l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~---~~l~~  393 (516)
                      .|++++|.+..      +...+..+++|++|++++|.++.     +...+..+++|++|+|++|.++..+..   ..+..
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            77777776652      22345556667777777776654     344556667777777777755432221   12222


Q ss_pred             --CCCccEEeccCCCCCC-----chhhhc-CCCcccEEecccCCCCCCC
Q 010182          394 --LTNLKELDLSNNQIHA-----LPNTFG-RLDKLIKLNLEENPMVIPP  434 (516)
Q Consensus       394 --l~~L~~L~L~~n~i~~-----lp~~l~-~l~~L~~L~L~~N~l~~~~  434 (516)
                        ...|++|++++|+|+.     +...+. .+++|+.|+|++|.+....
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence              3457777777777663     334442 4566777777777776544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.7e-16  Score=148.38  Aligned_cols=222  Identities=16%  Similarity=0.230  Sum_probs=137.5

Q ss_pred             cEEEeecCCCC--cchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCC--CcchhhcCCCCCcEEEeeC
Q 010182          211 EQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE--TLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       211 ~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~  286 (516)
                      +++|++++.+.  .+...+.  ..+..+.++...+...........+|++|++++|.++  .+...+..+++|++|++++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677766554  1111121  2344555554444332222334457777787777666  2444566777788888877


Q ss_pred             CCCC-CCCcccccCCCCcEEeCCCC-CCCcCC-hhhhhcCCCCcEEecCCC-CCc--cccchhcC-CCCCcEEEccCC--
Q 010182          287 NKLS-ALPDSISHCRSLVELDASFN-RLAYLP-TNIGHELVNLQKLLVPLN-KIR--FLPTSIGE-MASLRHLDAHFN--  357 (516)
Q Consensus       287 n~l~-~l~~~l~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~--~l~~~l~~-l~~L~~L~Ls~n--  357 (516)
                      |.++ ..+..+..+++|++|++++| .++... ..+...+++|++|++++| .++  .+...+.. +++|+.|+++++  
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            7766 23345666777888888775 354221 122345788888888775 343  22223333 467888888875  


Q ss_pred             CCCC--cchhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCC-CCCCc-hhhhcCCCcccEEecccCCCCC
Q 010182          358 ELHG--LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNN-QIHAL-PNTFGRLDKLIKLNLEENPMVI  432 (516)
Q Consensus       358 ~l~~--l~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n-~i~~l-p~~l~~l~~L~~L~L~~N~l~~  432 (516)
                      .+++  +......+++|++|++++|. ++. .....+..+++|++|+|++| .|++- ...+..+++|+.|+++++ +++
T Consensus       161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d  238 (284)
T d2astb2         161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  238 (284)
T ss_dssp             GSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccccccccccccccccccccccccccCCCc-hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCH
Confidence            3443  44455678899999998863 442 33456778899999999997 57743 356788999999999988 554


Q ss_pred             CCHH
Q 010182          433 PPVE  436 (516)
Q Consensus       433 ~~~~  436 (516)
                      ....
T Consensus       239 ~~l~  242 (284)
T d2astb2         239 GTLQ  242 (284)
T ss_dssp             TCHH
T ss_pred             HHHH
Confidence            4443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.61  E-value=6e-16  Score=153.58  Aligned_cols=219  Identities=18%  Similarity=0.194  Sum_probs=158.3

Q ss_pred             cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCCc-----------chhhcCCCCCcEEEee
Q 010182          222 FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLETL-----------PDSIGLLDNLKILDVS  285 (516)
Q Consensus       222 ~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~l-----------~~~l~~l~~L~~L~Ls  285 (516)
                      .+...+..+.+|+.|+|++|.++     .+...+...++|+.|+++++.+...           ...+..+++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            44556777889999999999886     3455677788999999988765532           2345567889999999


Q ss_pred             CCCCCC-----CCcccccCCCCcEEeCCCCCCCcCC-----hh--------hhhcCCCCcEEecCCCCCc-----cccch
Q 010182          286 GNKLSA-----LPDSISHCRSLVELDASFNRLAYLP-----TN--------IGHELVNLQKLLVPLNKIR-----FLPTS  342 (516)
Q Consensus       286 ~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l~-----~~--------~~~~l~~L~~L~L~~n~l~-----~l~~~  342 (516)
                      +|.++.     +...+..+++|++|++++|.++...     ..        .....+.|+.+.+++|.+.     .+...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            998874     3345567889999999999875211     00        1234678899999988876     34445


Q ss_pred             hcCCCCCcEEEccCCCCCC------cchhhCCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCC----
Q 010182          343 IGEMASLRHLDAHFNELHG------LPATIGKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHA----  409 (516)
Q Consensus       343 l~~l~~L~~L~Ls~n~l~~------l~~~l~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~----  409 (516)
                      +..+..|++|++++|.++.      +...+..+++|+.|++++|.++..+   +...+..+++|++|+|++|.|++    
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            6677889999999998875      2345677889999999999654322   34556788899999999999884    


Q ss_pred             -chhhhcC--CCcccEEecccCCCCCCCHHHHhc
Q 010182          410 -LPNTFGR--LDKLIKLNLEENPMVIPPVEVVKE  440 (516)
Q Consensus       410 -lp~~l~~--l~~L~~L~L~~N~l~~~~~~~~~~  440 (516)
                       +...+..  .+.|++|++++|.|+..+...+..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence             3344543  467999999999887655444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=3.8e-16  Score=141.87  Aligned_cols=125  Identities=20%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCC-c-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEV-I-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGN  287 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~-l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n  287 (516)
                      +.+++++++++.+|..+.  +++++|+|++|.|+. + +..|.++++|++|++++|.+..++. .+..+++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            456777777777765442  566777777777753 3 3455666677777777776665543 5556666667777666


Q ss_pred             CCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          288 KLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       288 ~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      +|+.++ ..|.++++|++|+|++|.|+.++...+..+++|++|++++|.+.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            666653 34556666666666666666666666656666666666666555

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.8e-16  Score=159.72  Aligned_cols=280  Identities=23%  Similarity=0.156  Sum_probs=188.4

Q ss_pred             hCCCccEEEeecCCCCc-----chHhhcC-CCCCcEEEeecCCCCC-----cchhhcCCCCccEEEeeCCCCCCc-----
Q 010182          206 AGKSLEQVDLSSRGLRF-----LPEAFGR-IAGLRLMSLSNNHLEV-----IPDSIAGLVNLEELNLASNLLETL-----  269 (516)
Q Consensus       206 ~~~~L~~L~L~~~~l~~-----l~~~~~~-l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~~l-----  269 (516)
                      ..++|+.|||++|.++.     +...+.. ..+|++|++++|.++.     ++..+..+++|++|++++|.|+..     
T Consensus        53 ~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1          53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhh
Confidence            45789999999999862     2333332 3579999999999973     456788899999999999986521     


Q ss_pred             c-----------------------------hhhcCCCCCcEEEeeCCCCC-----------------------------C
Q 010182          270 P-----------------------------DSIGLLDNLKILDVSGNKLS-----------------------------A  291 (516)
Q Consensus       270 ~-----------------------------~~l~~l~~L~~L~Ls~n~l~-----------------------------~  291 (516)
                      .                             ..+.....++.++++++.+.                             .
T Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  212 (460)
T d1z7xw1         133 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  212 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             hhcccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0                             01123356666666554321                             0


Q ss_pred             C-----CcccccCCCCcEEeCCCCCCCc-----CChhhhhcCCCCcEEecCCCCCcc-----ccchhcCCCCCcEEEccC
Q 010182          292 L-----PDSISHCRSLVELDASFNRLAY-----LPTNIGHELVNLQKLLVPLNKIRF-----LPTSIGEMASLRHLDAHF  356 (516)
Q Consensus       292 l-----~~~l~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~Ls~  356 (516)
                      .     ...+.....++.+++++|.+..     ...........++.+++++|.+..     ....+...+.++.+++++
T Consensus       213 ~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~  292 (460)
T d1z7xw1         213 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  292 (460)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0     0123446778888888887642     122233346789999999998873     234456778899999999


Q ss_pred             CCCCC-----cchhh-CCCCCCcEEEcccCCCCCCCc---chhhcCCCCccEEeccCCCCCC-----chhhhc-CCCccc
Q 010182          357 NELHG-----LPATI-GKLTNLEILNVSSNFTDMKEL---PETFGELTNLKELDLSNNQIHA-----LPNTFG-RLDKLI  421 (516)
Q Consensus       357 n~l~~-----l~~~l-~~l~~L~~L~L~~n~~~~~~l---~~~l~~l~~L~~L~L~~n~i~~-----lp~~l~-~l~~L~  421 (516)
                      |.++.     +...+ .....|+.+++++|.++...+   ...+...++|++|+|++|+|++     ++..+. ..+.|+
T Consensus       293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~  372 (460)
T d1z7xw1         293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR  372 (460)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             ccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCC
Confidence            98875     22222 345689999999986653332   2334566789999999999874     444554 467899


Q ss_pred             EEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcc-----ccccccEEEccCCc
Q 010182          422 KLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW-----LTRSTSWLKTVGEN  496 (516)
Q Consensus       422 ~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~-----~~~~l~~l~l~~N~  496 (516)
                      +|+|++|.|++.+...+..+               +...+.++.|+|++|+|++.....+.     ....+..+++.+|.
T Consensus       373 ~L~Ls~n~i~~~~~~~l~~~---------------l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         373 VLWLADCDVSDSSCSSLAAT---------------LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHHH---------------HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             EEECCCCCCChHHHHHHHHH---------------HhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            99999999985444333322               22346789999999999864333321     23368899999998


Q ss_pred             cccc
Q 010182          497 VSGI  500 (516)
Q Consensus       497 ls~~  500 (516)
                      ++..
T Consensus       438 ~~~~  441 (460)
T d1z7xw1         438 WSEE  441 (460)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            8753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-15  Score=135.03  Aligned_cols=126  Identities=22%  Similarity=0.284  Sum_probs=75.3

Q ss_pred             hcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEE
Q 010182          250 IAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL  329 (516)
Q Consensus       250 l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  329 (516)
                      +.++.+|++|+|++|+|+.++..+..+++|++|++++|.|+.+ +++..+++|++|++++|.++.++..++..+++|+.|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3445556666666666666655445566666666666666665 345666666666666666666665555556666666


Q ss_pred             ecCCCCCccccc--hhcCCCCCcEEEccCCCCCCcch----hhCCCCCCcEEE
Q 010182          330 LVPLNKIRFLPT--SIGEMASLRHLDAHFNELHGLPA----TIGKLTNLEILN  376 (516)
Q Consensus       330 ~L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l~~----~l~~l~~L~~L~  376 (516)
                      ++++|.+..++.  .+..+++|++|++++|.++..+.    .+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666665432  45556666666666666655432    344555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.1e-15  Score=138.80  Aligned_cols=127  Identities=23%  Similarity=0.283  Sum_probs=85.0

Q ss_pred             CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cc-hhhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCC
Q 010182          233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LP-DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASF  309 (516)
Q Consensus       233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~  309 (516)
                      .++++.++++++.+|..+.  +++++|+|++|.|+. ++ ..|..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            3467777777777776553  577777787777764 32 3566777777777777777755 34556677777777777


Q ss_pred             CCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC
Q 010182          310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG  361 (516)
Q Consensus       310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~  361 (516)
                      |+++.++...|.++++|++|+|++|.|+.++. .+..+++|++|+|++|.+..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            77777777666667777777777777666643 34556666666666665544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.8e-15  Score=124.49  Aligned_cols=117  Identities=24%  Similarity=0.347  Sum_probs=73.5

Q ss_pred             cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCC
Q 010182          211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS  290 (516)
Q Consensus       211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~  290 (516)
                      |.|+|++|+++.++. +..+++|++|++++|.++.+|..++.+++|++|++++|.|+.++. +..+++|++|++++|+|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccC
Confidence            356777777766653 666677777777777777766666667777777777777776653 666677777777777666


Q ss_pred             CCC--cccccCCCCcEEeCCCCCCCcCC---hhhhhcCCCCcEE
Q 010182          291 ALP--DSISHCRSLVELDASFNRLAYLP---TNIGHELVNLQKL  329 (516)
Q Consensus       291 ~l~--~~l~~l~~L~~L~L~~n~l~~l~---~~~~~~l~~L~~L  329 (516)
                      .++  ..+..+++|++|++++|.++..+   ..+...+++|+.|
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            554  34556666666766666665332   3333334554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-15  Score=130.13  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=62.6

Q ss_pred             CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCccc-ccCCCCcEEeC
Q 010182          229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDA  307 (516)
Q Consensus       229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~L  307 (516)
                      ++.+++.|+|++|+|+.++..+..+++|++|++++|.|+.++ .+..+++|++|++++|+++.++..+ ..+++|++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            344455555555555555444444555555555555555442 2445555555555555555544332 33555555555


Q ss_pred             CCCCCCcCCh-hhhhcCCCCcEEecCCCCCccccc----hhcCCCCCcEEE
Q 010182          308 SFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFLPT----SIGEMASLRHLD  353 (516)
Q Consensus       308 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~  353 (516)
                      ++|.++.++. ..+..+++|++|++++|.+...+.    .+..+++|++||
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5555554433 223345555555555555554432    345556666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2e-14  Score=120.69  Aligned_cols=104  Identities=25%  Similarity=0.286  Sum_probs=77.2

Q ss_pred             cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCC
Q 010182          234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLA  313 (516)
Q Consensus       234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~  313 (516)
                      |+|++++|+++.++ .+..+++|++|++++|.|+.+|..++.+++|++|++++|.|+.++ ++..+++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            56888888888775 477788888888888888888777778888888888888888774 4777788888888888877


Q ss_pred             cCCh-hhhhcCCCCcEEecCCCCCccc
Q 010182          314 YLPT-NIGHELVNLQKLLVPLNKIRFL  339 (516)
Q Consensus       314 ~l~~-~~~~~l~~L~~L~L~~n~l~~l  339 (516)
                      .++. ..+..+++|+.|++++|.+...
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            6654 3344566777777777766533

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.2e-14  Score=137.17  Aligned_cols=219  Identities=20%  Similarity=0.173  Sum_probs=148.5

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~  286 (516)
                      +..+.++...+...........+|++|+++++.++  .+...+..+++|++|++++|.++ ..+..++.+++|++|++++
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            44566555444322222334568999999988876  34556788899999999999887 3445677889999999998


Q ss_pred             C-CCCC--CCcccccCCCCcEEeCCCCC-CCc--CChhhhhcCCCCcEEecCCC--CCc--cccchhcCCCCCcEEEccC
Q 010182          287 N-KLSA--LPDSISHCRSLVELDASFNR-LAY--LPTNIGHELVNLQKLLVPLN--KIR--FLPTSIGEMASLRHLDAHF  356 (516)
Q Consensus       287 n-~l~~--l~~~l~~l~~L~~L~L~~n~-l~~--l~~~~~~~l~~L~~L~L~~n--~l~--~l~~~l~~l~~L~~L~Ls~  356 (516)
                      | .++.  +......+++|++|++++|. ++.  +...+....++|+.|+++++  .++  .+.....++++|++|++++
T Consensus       105 c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         105 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             cccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccccccc
Confidence            6 5652  22234568899999999874 442  22233344578999999875  343  3333446788999999998


Q ss_pred             C-CCCC-cchhhCCCCCCcEEEcccC-CCCCCCcchhhcCCCCccEEeccCCCCCC--chhhhcCCCcccEEecccCCCC
Q 010182          357 N-ELHG-LPATIGKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHA--LPNTFGRLDKLIKLNLEENPMV  431 (516)
Q Consensus       357 n-~l~~-l~~~l~~l~~L~~L~L~~n-~~~~~~l~~~l~~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~N~l~  431 (516)
                      | .+++ ....+..+++|++|++++| .++... ...++.+++|+.|++++| +++  +......+|+|+   +..+.++
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCC
Confidence            7 4664 4567788899999999986 444333 345778899999999998 442  333345566665   4556665


Q ss_pred             CC
Q 010182          432 IP  433 (516)
Q Consensus       432 ~~  433 (516)
                      ..
T Consensus       260 ~~  261 (284)
T d2astb2         260 TI  261 (284)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=2.4e-15  Score=137.17  Aligned_cols=127  Identities=25%  Similarity=0.334  Sum_probs=84.1

Q ss_pred             CccEEEeecC--CCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182          209 SLEQVDLSSR--GLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG  286 (516)
Q Consensus       209 ~L~~L~L~~~--~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~  286 (516)
                      .++.+++.+.  .++.++..+..+++|+.|+|++|.|+.++ .+..+++|++|++++|.|+.++..+..+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            3455666654  35667777777777777777777777764 46777777777777777777765544555677777777


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCc
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~  337 (516)
                      |.++.+ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+.
T Consensus       103 N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         103 NQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777766 345666677777777777665543 23345666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=6.4e-15  Score=134.28  Aligned_cols=112  Identities=24%  Similarity=0.371  Sum_probs=56.1

Q ss_pred             CCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhc
Q 010182          243 LEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHE  322 (516)
Q Consensus       243 l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~  322 (516)
                      +..++.++..+++|++|+|++|.|+.++ .+..+++|++|++++|.|+.++.....++                      
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~----------------------   93 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVAD----------------------   93 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHH----------------------
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccc----------------------
Confidence            3444445555555555555555555543 24445555555555555544443333333                      


Q ss_pred             CCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcc--hhhCCCCCCcEEEcccC
Q 010182          323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP--ATIGKLTNLEILNVSSN  380 (516)
Q Consensus       323 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n  380 (516)
                        +|+.|++++|.++.++ .+..+++|++|++++|.++.++  ..+..+++|+.|++++|
T Consensus        94 --~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          94 --TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             --HCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             --cccccccccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCC
Confidence              4455555555544442 3444555555555555555543  24555555666666555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.1e-11  Score=105.00  Aligned_cols=103  Identities=23%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             ccEEEeecCCCCcchHhhcCCCCCcEEEeecC-CCCCcc-hhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182          210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNN-HLEVIP-DSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG  286 (516)
Q Consensus       210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n-~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~  286 (516)
                      .+.++++++++...|..+..+++|+.|++++| .++.++ .+|.++++|+.|++++|.|+.++ .+|..+++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            34466666666666666666666666666544 366553 35666666666666666666653 3456666666666666


Q ss_pred             CCCCCCCcccccCCCCcEEeCCCCCC
Q 010182          287 NKLSALPDSISHCRSLVELDASFNRL  312 (516)
Q Consensus       287 n~l~~l~~~l~~l~~L~~L~L~~n~l  312 (516)
                      |+|+.++.......+|+.|++++|.+
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            66666655544444566666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-10  Score=100.09  Aligned_cols=106  Identities=20%  Similarity=0.145  Sum_probs=82.2

Q ss_pred             CCcEEecCCCCCccccchhcCCCCCcEEEccCC-CCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEe
Q 010182          325 NLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN-ELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELD  401 (516)
Q Consensus       325 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~  401 (516)
                      ....+++.++++...|..+..+++|++|++.+| .++.++ ..|..+++|+.|+|++|.+  ..+ +..|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l--~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC--CEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc--CCccccccccccccccee
Confidence            345566777777777777777788888888765 477764 4688889999999999954  444 56688999999999


Q ss_pred             ccCCCCCCchhhhcCCCcccEEecccCCCCC
Q 010182          402 LSNNQIHALPNTFGRLDKLIKLNLEENPMVI  432 (516)
Q Consensus       402 L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~  432 (516)
                      |++|+|+.+|.......+|+.|+|++|++..
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccC
Confidence            9999999998554455579999999999963

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.9e-08  Score=87.44  Aligned_cols=65  Identities=32%  Similarity=0.295  Sum_probs=35.5

Q ss_pred             hhcCCCCccEEEeeCCCCCCcc---hhhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCCCC
Q 010182          249 SIAGLVNLEELNLASNLLETLP---DSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLA  313 (516)
Q Consensus       249 ~l~~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~  313 (516)
                      .+..+++|++|+|++|+|+.++   ..+..+++|+.|++++|.|+.++. .......|+.|++++|.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3345666666666666666543   234455666666666666665532 1122334555666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.3e-08  Score=88.56  Aligned_cols=66  Identities=21%  Similarity=0.134  Sum_probs=39.4

Q ss_pred             hhcCCCCCcEEEeeCCCCCCCC---cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182          272 SIGLLDNLKILDVSGNKLSALP---DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR  337 (516)
Q Consensus       272 ~l~~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~  337 (516)
                      .+..+++|++|+|++|+|+.++   ..+..+++|+.|++++|.|+.++........+|+.|++.+|.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3445677777777777777553   23445666777777777766665533333445555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=5.5e-07  Score=78.25  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=75.1

Q ss_pred             CCCCcEEecCCC-CCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcc---
Q 010182          323 LVNLQKLLVPLN-KIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELP---  388 (516)
Q Consensus       323 l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~---  388 (516)
                      .++|++|+|+++ .++     .+...+...++|++|++++|.++.     +...+...+.|+.|+|++|.++..++.   
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455666666543 343     234456667778888888887765     455677778888888888877644432   


Q ss_pred             hhhcCCCCccEEeccCCCCCC--------chhhhcCCCcccEEecccCCC
Q 010182          389 ETFGELTNLKELDLSNNQIHA--------LPNTFGRLDKLIKLNLEENPM  430 (516)
Q Consensus       389 ~~l~~l~~L~~L~L~~n~i~~--------lp~~l~~l~~L~~L~L~~N~l  430 (516)
                      ..+...++|++|++++|.+..        +...+...++|+.|+++.+..
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            345666789999998886553        446677889999999977643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.21  E-value=6.3e-07  Score=77.90  Aligned_cols=60  Identities=25%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             CCccEEEeecC-CCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC
Q 010182          208 KSLEQVDLSSR-GLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE  267 (516)
Q Consensus       208 ~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~  267 (516)
                      +.|++|+|+++ .++     .+...+...++|+.|+|++|.++     .+...+...+.|++|+|++|.|+
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            55666666653 343     12334555555666666665554     22333444445555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.92  E-value=2.9e-06  Score=73.39  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=78.8

Q ss_pred             cCCCCcEEecCC-CCCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc---
Q 010182          322 ELVNLQKLLVPL-NKIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL---  387 (516)
Q Consensus       322 ~l~~L~~L~L~~-n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l---  387 (516)
                      +.++|++|++++ +.++     .+...+...++|++|++++|.++.     +...+...++++.+++++|.++..++   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456666777665 3454     345566777889999999998876     45567778899999999987664443   


Q ss_pred             chhhcCCCCccEEecc--CCCCCC-----chhhhcCCCcccEEecccCCC
Q 010182          388 PETFGELTNLKELDLS--NNQIHA-----LPNTFGRLDKLIKLNLEENPM  430 (516)
Q Consensus       388 ~~~l~~l~~L~~L~L~--~n~i~~-----lp~~l~~l~~L~~L~L~~N~l  430 (516)
                      ...+...++|+.++|+  +|.+++     +...+..+++|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2455667888876664  567763     567788999999999987754

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.87  E-value=4.6e-06  Score=72.06  Aligned_cols=104  Identities=17%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             CCCccEEEeec-CCCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC-----Ccc
Q 010182          207 GKSLEQVDLSS-RGLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE-----TLP  270 (516)
Q Consensus       207 ~~~L~~L~L~~-~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~-----~l~  270 (516)
                      .+.|++|++++ +.++     .+..++..+++|+.|++++|.++     .+...+...++++.+++++|.++     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            46777777776 3454     23445566677777777777665     23345555666667776666665     222


Q ss_pred             hhhcCCCCCcEEEee--CCCCC-----CCCcccccCCCCcEEeCCCC
Q 010182          271 DSIGLLDNLKILDVS--GNKLS-----ALPDSISHCRSLVELDASFN  310 (516)
Q Consensus       271 ~~l~~l~~L~~L~Ls--~n~l~-----~l~~~l~~l~~L~~L~L~~n  310 (516)
                      ..+...++|+.++|+  +|.++     .+...+..+++|++|++..+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            344455556554443  33443     23334444555555555444