Citrus Sinensis ID: 010206
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| Q39247 | 501 | Serine/threonine protein | yes | no | 0.966 | 0.994 | 0.786 | 0.0 | |
| Q0E2P1 | 525 | Serine/threonine protein | yes | no | 0.961 | 0.942 | 0.788 | 0.0 | |
| A2X2K3 | 525 | Serine/threonine protein | N/A | no | 0.961 | 0.942 | 0.788 | 0.0 | |
| Q38821 | 513 | Serine/threonine protein | no | no | 0.986 | 0.990 | 0.758 | 0.0 | |
| Q5Z8Z7 | 581 | Serine/threonine protein | no | no | 0.980 | 0.869 | 0.758 | 0.0 | |
| Q12702 | 463 | Protein phosphatase PP2A | yes | no | 0.862 | 0.958 | 0.502 | 1e-135 | |
| Q5ZIY5 | 451 | Serine/threonine-protein | yes | no | 0.840 | 0.960 | 0.501 | 1e-134 | |
| Q6DIY3 | 447 | Serine/threonine-protein | yes | no | 0.850 | 0.979 | 0.496 | 1e-133 | |
| Q7ZX64 | 447 | Serine/threonine-protein | N/A | no | 0.850 | 0.979 | 0.488 | 1e-132 | |
| Q66LE6 | 453 | Serine/threonine-protein | yes | no | 0.840 | 0.955 | 0.501 | 1e-131 |
| >sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/515 (78%), Positives = 450/515 (87%), Gaps = 17/515 (3%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P S S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI 240
NG ++ S D SFPPGG+ SLRLPVVV TSQETNLVA CRR+YAHAHDYHINSI
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVV-TSQETNLVARCRRVYAHAHDYHINSI 228
Query: 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300
SN+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLA
Sbjct: 229 SNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLA 288
Query: 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360
YSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSR
Sbjct: 289 YSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSR 348
Query: 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420
DYMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYS
Sbjct: 349 DYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYS 408
Query: 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480
NLFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR G+++ +AN
Sbjct: 409 NLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEAN 466
Query: 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
GNA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 467 GNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/500 (78%), Positives = 444/500 (88%), Gaps = 5/500 (1%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+ R
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+LE DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90 ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIK WKVQE+KVK++ N++ +++GNG S S+ ++ + NGGC E+ + +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208
Query: 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 255
D FPPGG +SLRLPVVV T Q+ NLV CRR+Y+HAHDYHINSISNNSDGET+ISADDL
Sbjct: 209 DLLFPPGGCTSLRLPVVV-TGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDL 267
Query: 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315
RINLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQ
Sbjct: 268 RINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQ 327
Query: 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 375
SALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSG
Sbjct: 328 SALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSG 387
Query: 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435
PVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+
Sbjct: 388 PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEA 447
Query: 436 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495
TTLEAS+NPMRRQV P+RP+R L SL+ VRR G +N +DANGN++D S KLLHLAW
Sbjct: 448 TTLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAW 505
Query: 496 HPSENSIACAASNSLYMYYA 515
HP+ENSIACAA+NSLYMYYA
Sbjct: 506 HPTENSIACAAANSLYMYYA 525
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The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/500 (78%), Positives = 444/500 (88%), Gaps = 5/500 (1%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+ R
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+LE DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90 ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIK WKVQE+KVK++ N++ +++GNG S S+ ++ + NGGC E+ + +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208
Query: 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 255
D FPPGG +SLRLPVVV T Q+ NLV CRR+Y+HAHDYHINSISNNSDGET+ISADDL
Sbjct: 209 DLLFPPGGCTSLRLPVVV-TGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDL 267
Query: 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315
RINLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQ
Sbjct: 268 RINLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQ 327
Query: 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 375
SALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSG
Sbjct: 328 SALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSG 387
Query: 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435
PVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+
Sbjct: 388 PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEA 447
Query: 436 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495
TTLEAS+NPMRRQV P+RP+R L SL+ VRR G +N +DANGN++D S KLLHLAW
Sbjct: 448 TTLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAW 505
Query: 496 HPSENSIACAASNSLYMYYA 515
HP+ENSIACAA+NSLYMYYA
Sbjct: 506 HPTENSIACAAANSLYMYYA 525
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/517 (75%), Positives = 439/517 (84%), Gaps = 9/517 (1%)
Query: 3 NGGGSSEAAAQ----PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG AA+ PLEW+FSQVFGER+AGEEVQEVDIISAIEFD SG+HLATGDRGGR
Sbjct: 2 NGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTDT ++ G RR+LE DY + RHPEFRYKTEFQSH+PEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDTNNSSGTRRELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKI 120
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
RWCQ+AN AL+LLSTNDKTIK WKVQ+KK+KK+ D N P + GNG + S S I S
Sbjct: 121 RWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNS 180
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHIN 238
+ NGG E N ND S P GG+SSLRLPVVV TS E++ VA CRR+YAHAHDYHIN
Sbjct: 181 CLVNGGVSEVN-NSLCNDFSLPAGGISSLRLPVVV-TSHESSPVARCRRVYAHAHDYHIN 238
Query: 239 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 298
SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA MEDL+EVITSAEFHPTHCNM
Sbjct: 239 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNM 298
Query: 299 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358
LAYSSSKGSIRLID+RQSALCD+HSKLFEE E G +SFFTEIIAS+SDIKFA+ GR++L
Sbjct: 299 LAYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLL 358
Query: 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418
SRDYMTLKLWDINMD+GPVATFQVHE+L+PKLCDLYENDSIFDKFECC+SG+G R ATGS
Sbjct: 359 SRDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGS 418
Query: 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD 478
YSNLFRVFG + GS E+ TLEAS+NPMRR V PSRPSR L S++ VV R G+++ +D
Sbjct: 419 YSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSR--GSESPGVD 476
Query: 479 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
N NA D++ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 477 GNTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/513 (75%), Positives = 435/513 (84%), Gaps = 8/513 (1%)
Query: 4 GGGSSEAAAQP-LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 62
G SS P +EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLF
Sbjct: 17 AGSSSAQQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 76
Query: 63 ERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ 122
ERTD RDN RR++E D ++RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWCQ
Sbjct: 77 ERTDARDNAS-RREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQ 135
Query: 123 SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182
+AN++L LLSTNDKTIK WKVQEKKVK+V N+ S S+ + + N
Sbjct: 136 TANNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSS--RGLLPN 193
Query: 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN 242
GGC +++ ++D FPPGG SLRLPVVV SQ+ NLVA CRR+YAHAHDYHINSIS
Sbjct: 194 GGCSDKS-SFLNSDILFPPGGYPSLRLPVVVA-SQDVNLVARCRRVYAHAHDYHINSIST 251
Query: 243 NSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 302
NSDGET+ISADDLRINLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHPTHCN LAYS
Sbjct: 252 NSDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYS 311
Query: 303 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362
SSKGSIRLID+RQSALCD HSK+FEE EAPG+RSFFTEIIASISDIKF+R+GR+ILSRDY
Sbjct: 312 SSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDY 371
Query: 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422
MTLKLWD+NMDSGPV+TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG VATGSY NL
Sbjct: 372 MTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNL 431
Query: 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 482
FRVFGC+ GS E+TTLEAS+NPMRRQ+ P+RP+R L SL+ VRR G +N +DANGN
Sbjct: 432 FRVFGCTPGSTEATTLEASRNPMRRQIVNPTRPTRTLTSLARGVRR--GGENQGVDANGN 489
Query: 483 AFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
+FDFS KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 490 SFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/505 (50%), Positives = 329/505 (65%), Gaps = 61/505 (12%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
+WKF+Q FG++ E++ E DIISA+EFD +GD+LATGD+GGRVVLFER ++
Sbjct: 10 QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFERNHSK------- 62
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+ E+++ TEFQSHEPEFDYLKSLEIEEKINKIRWC+ N A +LLSTND
Sbjct: 63 ----------KGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTND 112
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIKLWK+ EK +K V + N+ + + P+ G
Sbjct: 113 KTIKLWKLYEKNLKVVAENNL---SDSFHSPMQG-------------------------- 143
Query: 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 255
P S LRLP + + + A RR+YA+AH YHINSIS NSD ET+ISADDL
Sbjct: 144 ----PLTTPSQLRLPRL--NHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDL 197
Query: 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315
RINLWNL IS+ SFNIVD+KP NME+LTEVITSAEFHP +CN L YSSSKG+I+L+D+RQ
Sbjct: 198 RINLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQ 257
Query: 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 375
SALCD KLFE+QE ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+
Sbjct: 258 SALCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKA 317
Query: 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE---GS 432
PV T +H+ LR KLCDLYEND IFDKFEC SGD V +GSYSN F ++ G
Sbjct: 318 PVKTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGD 377
Query: 433 AESTTLEASKNPMRRQV----QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 488
L+A K R + P + + G+ + LD + D++
Sbjct: 378 RGQIVLQADKAAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDN--LDYNK 435
Query: 489 KLLHLAWHPSENSIACAASNSLYMY 513
K+LH +WHP E+S+A AA+N+L+++
Sbjct: 436 KILHASWHPFEDSVAIAATNNLFVF 460
|
Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1228), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/499 (50%), Positives = 325/499 (65%), Gaps = 66/499 (13%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
+W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R +
Sbjct: 14 FQWCFSQVQG--AVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 71
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
R E+ + FQSHEPEFDYLKSLEIEEKINKIRW N+A +LLSTN
Sbjct: 72 RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 119
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIKLWK+ E+ K+ +N+ E P
Sbjct: 120 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 151
Query: 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254
+++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADD
Sbjct: 152 --------KITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADD 201
Query: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314
LRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR
Sbjct: 202 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMR 261
Query: 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 374
SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++
Sbjct: 262 SSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN 321
Query: 375 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434
PV T+QVHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F +
Sbjct: 322 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFD--RNTRR 379
Query: 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494
TLEAS R+ P +P +G R+ + N ++ DF+ K+LH A
Sbjct: 380 DITLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDSLDFNKKILHTA 427
Query: 495 WHPSENSIACAASNSLYMY 513
WHP EN IA AA+N+LY++
Sbjct: 428 WHPMENIIAVAATNNLYIF 446
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Gallus gallus (taxid: 9031) |
| >sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/510 (49%), Positives = 330/510 (64%), Gaps = 72/510 (14%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ +W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+
Sbjct: 5 GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
R + R E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTIKLWK+ E+ K+V +N+ + P
Sbjct: 105 QNAAHFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147
Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 243
++SLR+P++ + + A RRI+A+AH YHINSIS N
Sbjct: 148 -------------------RITSLRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVN 186
Query: 244 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 303
SD ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSS
Sbjct: 187 SDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSS 246
Query: 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 363
SKG+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+
Sbjct: 247 SKGTIRLCDMRDSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYL 306
Query: 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423
++K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N F
Sbjct: 307 SVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFF 366
Query: 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 483
R+F + TLEAS R+ P +P +G R+ + N ++
Sbjct: 367 RMF--DRNTRRDITLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDS 412
Query: 484 FDFSMKLLHLAWHPSENSIACAASNSLYMY 513
DF+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 413 LDFNKKILHTAWHPTDNIIAVAATNNLYIF 442
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Xenopus tropicalis (taxid: 8364) |
| >sp|Q7ZX64|2ABD_XENLA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus laevis GN=ppp2r2d PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/510 (48%), Positives = 330/510 (64%), Gaps = 72/510 (14%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ +W FSQV G E+V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5 GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGELLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
R + R E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTIKLWK+ E+ K+V +N+ + P
Sbjct: 105 QNAANFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147
Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 243
++SLR+P++ + + A RRI+A+AH YHINSIS N
Sbjct: 148 -------------------RITSLRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVN 186
Query: 244 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 303
SD +T++SADDLR+NLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HC+M YSS
Sbjct: 187 SDHQTYLSADDLRVNLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCHMFVYSS 246
Query: 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 363
SKG+IRL DMR +ALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+
Sbjct: 247 SKGTIRLCDMRDAALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYL 306
Query: 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423
++K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N F
Sbjct: 307 SVKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFF 366
Query: 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 483
R+F + TLEAS R+ P +P +G R+ + N ++
Sbjct: 367 RMF--DRNTRRDITLEAS-----RESSKPRATLKPRKVCTGGKRKKD-------EINVDS 412
Query: 484 FDFSMKLLHLAWHPSENSIACAASNSLYMY 513
DF+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 413 LDFNKKILHTAWHPTDNIIAVAATNNLYIF 442
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Xenopus laevis (taxid: 8355) |
| >sp|Q66LE6|2ABD_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1 | Back alignment and function description |
|---|
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/499 (50%), Positives = 323/499 (64%), Gaps = 66/499 (13%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
+W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R +
Sbjct: 16 FQWCFSQVKG--AIDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 73
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
R E+ + FQSHEPEFDYLKSLEIEEKINKIRW N+A +LLSTN
Sbjct: 74 RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 121
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIKLWK+ E+ K+ +N+ E P
Sbjct: 122 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 153
Query: 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254
+++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADD
Sbjct: 154 --------RITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADD 203
Query: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314
LRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR
Sbjct: 204 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMR 263
Query: 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 374
SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S
Sbjct: 264 SSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMES 323
Query: 375 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434
PV T QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F +
Sbjct: 324 RPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD--RDTRR 381
Query: 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494
TLEAS R+ P +P +G RR D ++D + DF+ K+LH A
Sbjct: 382 DVTLEAS-----RESSKPRASLKPRKVCTGGKRR---KDEISVD----SLDFNKKILHTA 429
Query: 495 WHPSENSIACAASNSLYMY 513
WHP +N IA AA+N+LY++
Sbjct: 430 WHPVDNVIAVAATNNLYIF 448
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 224088860 | 521 | predicted protein [Populus trichocarpa] | 0.963 | 0.952 | 0.850 | 0.0 | |
| 224142870 | 517 | predicted protein [Populus trichocarpa] | 0.990 | 0.986 | 0.828 | 0.0 | |
| 356556686 | 514 | PREDICTED: serine/threonine protein phos | 0.963 | 0.964 | 0.838 | 0.0 | |
| 11094369 | 515 | Ser/Thr specific protein phosphatase 2A | 0.988 | 0.988 | 0.803 | 0.0 | |
| 356550460 | 514 | PREDICTED: serine/threonine protein phos | 0.986 | 0.988 | 0.818 | 0.0 | |
| 225442335 | 512 | PREDICTED: serine/threonine protein phos | 0.963 | 0.968 | 0.846 | 0.0 | |
| 224128562 | 512 | predicted protein [Populus trichocarpa] | 0.988 | 0.994 | 0.822 | 0.0 | |
| 357454701 | 520 | Serine/threonine protein phosphatase 2A | 0.968 | 0.959 | 0.837 | 0.0 | |
| 18394522 | 501 | Protein phosphatase 2A, regulatory subun | 0.966 | 0.994 | 0.786 | 0.0 | |
| 297738699 | 508 | unnamed protein product [Vitis vinifera] | 0.980 | 0.994 | 0.790 | 0.0 |
| >gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/501 (85%), Positives = 458/501 (91%), Gaps = 5/501 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRGGRVVLFERTDTRD+GG R
Sbjct: 26 LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNR 85
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MD+ ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQSAN AL+LLSTN
Sbjct: 86 RDLERMDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTN 145
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ D NV P KAAGNGP+ G +S K Y ANGGC ++ G S
Sbjct: 146 DKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKPLGL-S 204
Query: 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254
ND SFPPGGVSSL LPV+ TS ET+LV CRRIYAHAHDYHINSISNNSDGETFISADD
Sbjct: 205 NDFSFPPGGVSSLHLPVL--TSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADD 262
Query: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314
LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS+GSIRL+DMR
Sbjct: 263 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMR 322
Query: 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 374
QSALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+ILSRDYMTLKLWDINMDS
Sbjct: 323 QSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDS 382
Query: 375 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434
GPV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC++GS E
Sbjct: 383 GPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTE 442
Query: 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494
+TTLEASKNPMRRQVQTPSRPSR LG+LS RR GAD S D NGNAFDF+ KLLHLA
Sbjct: 443 ATTLEASKNPMRRQVQTPSRPSRSLGTLSRGFRR--GADTSGADTNGNAFDFTTKLLHLA 500
Query: 495 WHPSENSIACAASNSLYMYYA 515
WHP+ENS+ACAASNSLYMYYA
Sbjct: 501 WHPTENSLACAASNSLYMYYA 521
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142870|ref|XP_002324758.1| predicted protein [Populus trichocarpa] gi|222866192|gb|EEF03323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/519 (82%), Positives = 462/519 (89%), Gaps = 9/519 (1%)
Query: 3 NGGGSSEAAAQP------LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG 56
NGGGS EAA LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRG
Sbjct: 2 NGGGSEEAAEAVAAAPVPLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRG 61
Query: 57 GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116
GRVVLFERTD RD+GG RRDLE MD+ + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
Sbjct: 62 GRVVLFERTDKRDHGGNRRDLERMDFPIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121
Query: 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176
KIRWCQ+AN AL+LLSTNDKTIK WKV EKKVKK+ D NV P KAAGNGP+ G +
Sbjct: 122 KIRWCQAANGALFLLSTNDKTIKFWKVHEKKVKKICDMNVDPAKAAGNGPVVGPSIPTSS 181
Query: 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYH 236
K Y ANGGC ++ G SND SFP GGV SL LPVVV+TS E +LV CRRIYAHAHDYH
Sbjct: 182 KPYTANGGCLDKPLGL-SNDFSFPLGGVPSLHLPVVVLTSSEISLVPRCRRIYAHAHDYH 240
Query: 237 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 296
INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC
Sbjct: 241 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 300
Query: 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356
N+LAYSSS+GSIRL+DMRQSALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+
Sbjct: 301 NILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRY 360
Query: 357 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416
ILSRDYMTLKLWDINMDSGPV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVAT
Sbjct: 361 ILSRDYMTLKLWDINMDSGPVSTFQVHENLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 420
Query: 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA 476
GSYSNLFRVFGCSEGS E+TTLEASKNPMR+QVQTPSRPSR LG+LS RR GAD S
Sbjct: 421 GSYSNLFRVFGCSEGSTEATTLEASKNPMRKQVQTPSRPSRSLGTLSHGFRR--GADTSG 478
Query: 477 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
+D NGNAFDF+ KLLHLAWHP+ENS+ACAASNSLYMYYA
Sbjct: 479 VDTNGNAFDFTTKLLHLAWHPTENSLACAASNSLYMYYA 517
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556686|ref|XP_003546654.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/502 (83%), Positives = 457/502 (91%), Gaps = 6/502 (1%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 18 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 77
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MDYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 78 RDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 137
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ + NV P K+ GNG I S S+ + Y+ NGG +R + S
Sbjct: 138 DKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDR-YNYIS 196
Query: 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254
ND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADD
Sbjct: 197 NDFSFPPGGLPSLRLPMV--SSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADD 254
Query: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314
LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN LAYSSSKGSIRL+D+R
Sbjct: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLR 314
Query: 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 374
QSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSRDYMTLKLWDINMDS
Sbjct: 315 QSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDS 374
Query: 375 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434
GPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE
Sbjct: 375 GPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAE 434
Query: 435 STTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 493
+TTLEASKNPMRRQV TPSRPSR LG S++ VVRR GA+ +DANGN+FDF+ KLLHL
Sbjct: 435 ATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRR--GAEAPGVDANGNSFDFTTKLLHL 492
Query: 494 AWHPSENSIACAASNSLYMYYA 515
AWHPSENSIACAA+NSLYMYYA
Sbjct: 493 AWHPSENSIACAAANSLYMYYA 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/518 (80%), Positives = 464/518 (89%), Gaps = 9/518 (1%)
Query: 3 NGGG----SSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG + E QPLEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2 NGGDEVVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTD++D G R DLE MDYS++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDSKDQHGSRSDLERMDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
+WCQ+AN A++LLSTNDKTIK WKVQEKKVKK+ D N+ KA GNG I S S+ K
Sbjct: 122 KWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKP 181
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHIN 238
++ANGG ++++ SND SFPPGG+ SL+LP VV S ET+L+A CRR+YAHAHDYHIN
Sbjct: 182 HLANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVV--SHETSLLARCRRVYAHAHDYHIN 239
Query: 239 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 298
SISNNSDGETFISADDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHPTHCN
Sbjct: 240 SISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNT 299
Query: 299 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358
LAYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKFA++GR+IL
Sbjct: 300 LAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYIL 359
Query: 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418
SRDYMTLKLWDINMDSGPVAT++VHEHLRP+LCDLYENDSIFDKFECCLSGDG RV+TGS
Sbjct: 360 SRDYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGS 419
Query: 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSAL 477
YSNLFRVFGC+ GS E+TTLEASKNPMRRQV TPSRPSR +G S++ VVRR GA+N+++
Sbjct: 420 YSNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSIGNSITRVVRR--GAENTSV 477
Query: 478 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
DANGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 478 DANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515
|
Source: Medicago sativa subsp. x varia Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550460|ref|XP_003543605.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/518 (81%), Positives = 461/518 (88%), Gaps = 10/518 (1%)
Query: 3 NGGGSSEAAA----QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG AA PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2 NGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTDT+D+GG RDLE +DYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
RWCQ AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P K+ GNG I S S+ +
Sbjct: 122 RWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRP 181
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHIN 238
Y+ANGG +R + SND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHIN
Sbjct: 182 YLANGGSPDR-YNYISNDFSFPPGGIPSLRLPMV--SSHETSLVARCRRVYAHAHDYHIN 238
Query: 239 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 298
SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN
Sbjct: 239 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNT 298
Query: 299 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358
LAYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+IL
Sbjct: 299 LAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYIL 358
Query: 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418
SRDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG R+ATGS
Sbjct: 359 SRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGS 418
Query: 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSAL 477
YSNLFRVFGC+ GSAE+TTLEASKNPMRR V TPSRPSR LG S++ VVRR GA+ +
Sbjct: 419 YSNLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRR--GAETPGV 476
Query: 478 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
DANGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 477 DANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442335|ref|XP_002280910.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/501 (84%), Positives = 456/501 (91%), Gaps = 5/501 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 17 LEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 76
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MDY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 77 RDLERMDYPI-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 135
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ D N+ P KA GNG + S S PK Y+ANGG +R++ S
Sbjct: 136 DKTIKFWKVQEKKVKKISDMNLDPSKAVGNGSVASSSNSTSPKPYLANGGSPDRSYSYLS 195
Query: 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254
ND SFPPGG+ SLRLP V +S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADD
Sbjct: 196 NDFSFPPGGIPSLRLPTV--SSPETSLVARCRRVYAHAHDYHINSISNNSDGETFISADD 253
Query: 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314
LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL D+R
Sbjct: 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLNDLR 313
Query: 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS 374
QSALCD+HSKLFEEQEAPG+RSFFTEIIASISDIKF+++GR ILSRDYMTLKLWDINMDS
Sbjct: 314 QSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSRDYMTLKLWDINMDS 373
Query: 375 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434
GPV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGCS GS E
Sbjct: 374 GPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGMRVATGSYSNLFRVFGCSPGSTE 433
Query: 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494
+TTLEASKNPMRRQVQTPSRPSR L S++ VVRR GAD+ +DANGN+FDF+ KLLHLA
Sbjct: 434 ATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GADSPGVDANGNSFDFTTKLLHLA 491
Query: 495 WHPSENSIACAASNSLYMYYA 515
WHPSENSIACAA+NSLYMYYA
Sbjct: 492 WHPSENSIACAAANSLYMYYA 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/518 (82%), Positives = 462/518 (89%), Gaps = 9/518 (1%)
Query: 1 MDNGGGSSEAAA---QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG 57
M+ G +EA A QPLEWKFSQVFGERTAGEEVQEVDIISAIEFD+SGDHLATGDRGG
Sbjct: 1 MNGGDEVAEAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGG 60
Query: 58 RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117
RVVLFERTDT+D+GG RRDLE M Y +SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
Sbjct: 61 RVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 120
Query: 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177
IRWCQ+AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P KA GNG + S S+I K
Sbjct: 121 IRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGK 180
Query: 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI 237
Y+ANGG +++ SND S PGG SLRLPVV TS ET+L+A CRR+YAHAHDYHI
Sbjct: 181 QYLANGG--DKSHNLPSNDLSISPGGFPSLRLPVV--TSNETSLMARCRRVYAHAHDYHI 236
Query: 238 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 297
NSISNNSDGETFISADDLRINLWNLEISNQSFNI DVKPANMEDLTEVITSAEFHP+HCN
Sbjct: 237 NSISNNSDGETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCN 296
Query: 298 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 357
MLAYSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKFAR+GRHI
Sbjct: 297 MLAYSSSKGSIRLIDMRQSALCDSHAKLFEEPEAPGSRSFFTEIIASISDIKFARDGRHI 356
Query: 358 LSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417
LSRDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECC SGDG RVATG
Sbjct: 357 LSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCSSGDGLRVATG 416
Query: 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL 477
SYSNLFRVFGC+ GS E++TLEASKNPMRRQVQTPSRPSR L S++ VVRR GA+ +
Sbjct: 417 SYSNLFRVFGCAPGSTEASTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GAEGPGV 474
Query: 478 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
DANGN+FDF+ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 475 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454701|ref|XP_003597631.1| Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Medicago truncatula] gi|355486679|gb|AES67882.1| Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/504 (83%), Positives = 456/504 (90%), Gaps = 5/504 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+G R
Sbjct: 19 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGESR 78
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RD E MDYS+SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ AN AL+LLSTN
Sbjct: 79 RDSERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQIANGALFLLSTN 138
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC--GERNFGC 192
DKTIK WKVQEKKVKKV + NV P K GNG I S S+ P+ + NGG +R++
Sbjct: 139 DKTIKFWKVQEKKVKKVAEMNVDPSKTMGNGSIASSSNSSNPRPNLENGGYPDSDRSYNY 198
Query: 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252
S D SFPPGG+ SLRLPVVVV+S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISA
Sbjct: 199 LSPDFSFPPGGIPSLRLPVVVVSSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISA 258
Query: 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312
DDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHPTHCN LAYSSSKGSIRLID
Sbjct: 259 DDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLID 318
Query: 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 372
+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSRDYMTLKLWDINM
Sbjct: 319 LRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINM 378
Query: 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432
DSGPVAT+QVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GS
Sbjct: 379 DSGPVATYQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGS 438
Query: 433 AESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLL 491
E+TTLEASKNPMRRQV TPSRPSR LG S++ VVRR GA+N +DANGN+FDF+ KLL
Sbjct: 439 TEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRR--GAENPGVDANGNSFDFTTKLL 496
Query: 492 HLAWHPSENSIACAASNSLYMYYA 515
HLAWHPSENSIACAA+NSLYMYYA
Sbjct: 497 HLAWHPSENSIACAAANSLYMYYA 520
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394522|ref|NP_564033.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|75319459|sp|Q39247.1|2ABB_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; Short=AtB beta; Short=PP2A, subunit B, beta isoform gi|1408460|gb|AAB60777.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit [Arabidopsis thaliana] gi|15010728|gb|AAK74023.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|23308483|gb|AAN18211.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|110741434|dbj|BAE98679.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191505|gb|AEE29626.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/515 (78%), Positives = 450/515 (87%), Gaps = 17/515 (3%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P S S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI 240
NG ++ S D SFPPGG+ SLRLPVVV TSQETNLVA CRR+YAHAHDYHINSI
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVV-TSQETNLVARCRRVYAHAHDYHINSI 228
Query: 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300
SN+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLA
Sbjct: 229 SNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLA 288
Query: 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360
YSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSR
Sbjct: 289 YSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSR 348
Query: 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420
DYMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYS
Sbjct: 349 DYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYS 408
Query: 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480
NLFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR G+++ +AN
Sbjct: 409 NLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEAN 466
Query: 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
GNA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 467 GNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738699|emb|CBI27944.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/515 (79%), Positives = 448/515 (86%), Gaps = 10/515 (1%)
Query: 3 NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2 NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTD RD+GG RRDLEMMD+ + HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDKRDHGGYRRDLEMMDHPVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG + +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI 240
NGGC +R++G S D SFP G ++L P VV S ET+L A CRRIYAHAHDYHINSI
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTVV-HSNETSLSARCRRIYAHAHDYHINSI 236
Query: 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300
SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLA
Sbjct: 237 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLA 296
Query: 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360
YSSSKGSIRLID+RQSALCD+H+KLFE EAP ++SFFTEIIASISDIKF ++GR+ILSR
Sbjct: 297 YSSSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSR 356
Query: 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420
DYM LKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYS
Sbjct: 357 DYMNLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGTRVATGSYS 416
Query: 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480
NLFRVFGC+ GS E+TTLEASKNPMRRQ PSRP R L + + V RR G ++ A+DAN
Sbjct: 417 NLFRVFGCTAGSTEATTLEASKNPMRRQAPAPSRP-RSLSTFARVGRR--GPESPAVDAN 473
Query: 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
GNAFD S KLLHLAWHP+ENS+ACAA+NSLYMY+A
Sbjct: 474 GNAFDLSTKLLHLAWHPTENSLACAAANSLYMYFA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| TAIR|locus:2007963 | 501 | ATB BETA [Arabidopsis thaliana | 0.966 | 0.994 | 0.751 | 1.6e-205 | |
| DICTYBASE|DDB_G0283905 | 483 | phr2aB "protein phosphatase 2A | 0.924 | 0.985 | 0.482 | 2.4e-122 | |
| UNIPROTKB|F1NNN2 | 450 | PPP2R2D "Serine/threonine-prot | 0.574 | 0.657 | 0.547 | 1.2e-119 | |
| UNIPROTKB|F1NS69 | 451 | PPP2R2D "Serine/threonine-prot | 0.574 | 0.656 | 0.547 | 1.2e-119 | |
| UNIPROTKB|Q5ZIY5 | 451 | PPP2R2D "Serine/threonine-prot | 0.574 | 0.656 | 0.547 | 1.2e-119 | |
| UNIPROTKB|Q6DIY3 | 447 | ppp2r2d "Serine/threonine-prot | 0.574 | 0.662 | 0.547 | 2.5e-119 | |
| UNIPROTKB|Q66LE6 | 453 | PPP2R2D "Serine/threonine-prot | 0.576 | 0.655 | 0.543 | 2.5e-119 | |
| MGI|MGI:1289252 | 453 | Ppp2r2d "protein phosphatase 2 | 0.576 | 0.655 | 0.536 | 5.2e-119 | |
| CGD|CAL0004658 | 519 | orf19.1468 [Candida albicans ( | 0.431 | 0.427 | 0.616 | 7.3e-119 | |
| UNIPROTKB|Q7ZX64 | 447 | ppp2r2d "Serine/threonine-prot | 0.574 | 0.662 | 0.538 | 3.7e-118 |
| TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1988 (704.9 bits), Expect = 1.6e-205, P = 1.6e-205
Identities = 387/515 (75%), Positives = 428/515 (83%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTI + N+ P ++ S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSES-----------SNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI 240
NG ++ S D SFPPGG+ SLRLPVVV TSQETNLVA CRR+YAHAHDYHINSI
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVV-TSQETNLVARCRRVYAHAHDYHINSI 228
Query: 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300
SN+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLA
Sbjct: 229 SNSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLA 288
Query: 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360
YSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSR
Sbjct: 289 YSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSR 348
Query: 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420
DYMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYS
Sbjct: 349 DYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYS 408
Query: 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDAN 480
NLFRVFG S+GS E+ TLEASKNPMRRQ+QT VVRR G+++ +AN
Sbjct: 409 NLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEAN 466
Query: 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
GNA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 467 GNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
|
| DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 243/504 (48%), Positives = 336/504 (66%)
Query: 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG 72
+PL+W+FSQ FG + E+ + +++ AIEFD++GD +A GD+GG+V+L +RT D
Sbjct: 3 EPLDWRFSQTFGGK-GNEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRT--HDKQS 59
Query: 73 QRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132
++ S+ PE+R+ +EFQSHEPEFDYLKSLEIEEKINKI+WC N A +LL+
Sbjct: 60 SKK---------SKLPEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLT 110
Query: 133 TNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHV-SAIPKSYMANGGCGERNFG 191
TNDKTI + + NG + ++ S +Y+ N G N
Sbjct: 111 TNDKTIKLWKVYEKKIKQV-STSATTTGPSYNGSLASNNTRSPSHTTYIYNSS-GAHNMN 168
Query: 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251
N+S+ +++ ++P + T++ET + A R+I+ +AH YHINSIS NSDGET+IS
Sbjct: 169 NNMNNSN-NNNNLNNFKIPKL--TTRETVVTATPRKIFQNAHAYHINSISLNSDGETYIS 225
Query: 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311
+DDLRI+LWNL I+ + FN+VD+KP NMEDLTEVITSAEFHPT CN+ YSSSKG+I+L
Sbjct: 226 SDDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLG 285
Query: 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371
D+R SALCD H+K+FEE E P +SFF+EII+SISDIKF+R+GR+ILSRD++TLKLWDIN
Sbjct: 286 DLRSSALCDNHAKVFEEYEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDIN 345
Query: 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431
M++ PV T Q+H++L+PKLCDLYEND IFDKFEC L+ DG ++ TGSY N ++
Sbjct: 346 MENKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIY--DRN 403
Query: 432 SAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLL 491
S + LEASK + + +T +R K D + +A +++ K L
Sbjct: 404 SKQDVCLEASKQATKSKTKTLTTKMK--------LRSSKKEPKKPEDIHPDAIEYTKKTL 455
Query: 492 HLAWHPSENSIACAASNSLYMYYA 515
H AWHP +N IA A+N++Y+Y A
Sbjct: 456 HCAWHPKDNLIAVGAANTVYLYAA 479
|
|
| UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 172/314 (54%), Positives = 230/314 (73%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 149 PFKITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 206
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 207 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCD 266
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+
Sbjct: 267 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 326
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEA
Sbjct: 327 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEA 384
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSE 499
S+ + + R+V G + N ++ DF+ K+LH AWHP E
Sbjct: 385 SRESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPME 431
Query: 500 NSIACAASNSLYMY 513
N IA AA+N+LY++
Sbjct: 432 NIIAVAATNNLYIF 445
|
|
| UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 172/314 (54%), Positives = 230/314 (73%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 150 PFKITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 207
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 208 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCD 267
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+
Sbjct: 268 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 327
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEA
Sbjct: 328 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEA 385
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSE 499
S+ + + R+V G + N ++ DF+ K+LH AWHP E
Sbjct: 386 SRESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPME 432
Query: 500 NSIACAASNSLYMY 513
N IA AA+N+LY++
Sbjct: 433 NIIAVAATNNLYIF 446
|
|
| UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 172/314 (54%), Positives = 230/314 (73%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 150 PFKITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 207
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 208 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCD 267
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+
Sbjct: 268 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 327
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEA
Sbjct: 328 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEA 385
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSE 499
S+ + + R+V G + N ++ DF+ K+LH AWHP E
Sbjct: 386 SRESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPME 432
Query: 500 NSIACAASNSLYMY 513
N IA AA+N+LY++
Sbjct: 433 NIIAVAATNNLYIF 446
|
|
| UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 172/314 (54%), Positives = 230/314 (73%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P ++SLR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 146 PFRITSLRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 203
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCD 263
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T+
Sbjct: 264 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETY 323
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEA
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDITLEA 381
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSE 499
S+ + + R+V G + N ++ DF+ K+LH AWHP++
Sbjct: 382 SRESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPTD 428
Query: 500 NSIACAASNSLYMY 513
N IA AA+N+LY++
Sbjct: 429 NIIAVAATNNLYIF 442
|
|
| UNIPROTKB|Q66LE6 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 2.5e-119, Sum P(2) = 2.5e-119
Identities = 170/313 (54%), Positives = 227/313 (72%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 152 PFRITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 209
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR SALCD
Sbjct: 210 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCD 269
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T
Sbjct: 270 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETH 329
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEA
Sbjct: 330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRDTRRDVTLEA 387
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500
S+ + + +R K D ++D+ DF+ K+LH AWHP +N
Sbjct: 388 SRESSKPRASLKPRKVCTGG------KRRK--DEISVDS----LDFNKKILHTAWHPVDN 435
Query: 501 SIACAASNSLYMY 513
IA AA+N+LY++
Sbjct: 436 VIAVAATNNLYIF 448
|
|
| MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
Identities = 168/313 (53%), Positives = 226/313 (72%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW
Sbjct: 152 PFRITALRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLW 209
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR SALCD
Sbjct: 210 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCD 269
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+ PV T
Sbjct: 270 RHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETH 329
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEA
Sbjct: 330 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDVTLEA 387
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500
S+ + + +R K D ++D+ DF+ K+LH AWHP E+
Sbjct: 388 SRENSKPRASLKPRKVCTGG------KRKK--DEISVDS----LDFNKKILHTAWHPMES 435
Query: 501 SIACAASNSLYMY 513
IA AA+N+LY++
Sbjct: 436 IIAVAATNNLYIF 448
|
|
| CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 7.3e-119, Sum P(3) = 7.3e-119
Identities = 138/224 (61%), Positives = 180/224 (80%)
Query: 203 GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNL 262
G+SSL+LP + + + + A ++IYA+AH YHINSIS NSD ET++SADDLRINLWNL
Sbjct: 143 GISSLKLPQLQL--HDKLISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNL 200
Query: 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322
I++QSFNIVD+KPANME+LTEVITSAEFHP+ CN+ YSSSKG+I+L DMR ++LCD+H
Sbjct: 201 GIADQSFNIVDIKPANMEELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSH 260
Query: 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 382
+K+FEE P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T V
Sbjct: 261 AKIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDV 320
Query: 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426
HEHLR +LCD YEND+IFDKFE GD V TGSY+N F ++
Sbjct: 321 HEHLRERLCDTYENDAIFDKFEVQFGGDNKSVMTGSYNNQFVIY 364
|
|
| UNIPROTKB|Q7ZX64 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 3.7e-118, Sum P(2) = 3.7e-118
Identities = 169/314 (53%), Positives = 230/314 (73%)
Query: 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLW 260
P ++SLR+P++ + + A RRI+A+AH YHINSIS NSD +T++SADDLR+NLW
Sbjct: 146 PFRITSLRVPIL--KPMDLMVEASPRRIFANAHTYHINSISVNSDHQTYLSADDLRVNLW 203
Query: 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320
+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HC+M YSSSKG+IRL DMR +ALCD
Sbjct: 204 HLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCHMFVYSSSKGTIRLCDMRDAALCD 263
Query: 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T+
Sbjct: 264 RHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETY 323
Query: 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440
QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEA
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFFRMF--DRNTRRDITLEA 381
Query: 441 SKNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSE 499
S+ + + R+V G + N ++ DF+ K+LH AWHP++
Sbjct: 382 SRESSKPRATLKP-------------RKVCTGGKRKKDEINVDSLDFNKKILHTAWHPTD 428
Query: 500 NSIACAASNSLYMY 513
N IA AA+N+LY++
Sbjct: 429 NIIAVAATNNLYIF 442
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0E2P1 | 2ABB_ORYSJ | No assigned EC number | 0.788 | 0.9611 | 0.9428 | yes | no |
| Q39247 | 2ABB_ARATH | No assigned EC number | 0.7864 | 0.9669 | 0.9940 | yes | no |
| Q54Q99 | PH2AB_DICDI | No assigned EC number | 0.4960 | 0.9165 | 0.9772 | yes | no |
| Q00006 | 2ABB_RABIT | No assigned EC number | 0.5084 | 0.7922 | 0.9878 | yes | no |
| Q4R8L3 | 2ABB_MACFA | No assigned EC number | 0.5104 | 0.8077 | 0.9390 | N/A | no |
| Q6DIY3 | 2ABD_XENTR | No assigned EC number | 0.4960 | 0.8504 | 0.9798 | yes | no |
| P36877 | 2ABB_RAT | No assigned EC number | 0.5125 | 0.8077 | 0.9390 | yes | no |
| P36872 | 2ABA_DROME | No assigned EC number | 0.4911 | 0.8601 | 0.8877 | yes | no |
| Q5E9Q7 | 2ABB_BOVIN | No assigned EC number | 0.5104 | 0.8077 | 0.9390 | yes | no |
| Q29090 | 2ABA_PIG | No assigned EC number | 0.5082 | 0.8155 | 0.9859 | yes | no |
| Q66LE6 | 2ABD_HUMAN | No assigned EC number | 0.5010 | 0.8407 | 0.9558 | yes | no |
| Q5R4A2 | 2ABB_PONAB | No assigned EC number | 0.5104 | 0.8077 | 0.9390 | yes | no |
| Q12702 | 2ABA_SCHPO | No assigned EC number | 0.5029 | 0.8621 | 0.9589 | yes | no |
| Q38821 | 2ABA_ARATH | No assigned EC number | 0.7582 | 0.9864 | 0.9902 | no | no |
| Q6ZWR4 | 2ABB_MOUSE | No assigned EC number | 0.5104 | 0.8077 | 0.9390 | yes | no |
| Q5ZIY5 | 2ABD_CHICK | No assigned EC number | 0.5010 | 0.8407 | 0.9600 | yes | no |
| A1L3L9 | 2ABB_XENLA | No assigned EC number | 0.5030 | 0.8252 | 0.9081 | N/A | no |
| B6VA23 | 2ABB_CARAU | No assigned EC number | 0.5062 | 0.8077 | 0.9390 | N/A | no |
| Q00362 | 2ABA_YEAST | No assigned EC number | 0.5299 | 0.7262 | 0.7110 | yes | no |
| Q6NY64 | 2ABD_DANRE | No assigned EC number | 0.5 | 0.8504 | 0.9798 | yes | no |
| Q5Z8Z7 | 2ABA_ORYSJ | No assigned EC number | 0.7582 | 0.9805 | 0.8691 | no | no |
| A2X2K3 | 2ABB_ORYSI | No assigned EC number | 0.788 | 0.9611 | 0.9428 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| COG5170 | 460 | COG5170, CDC55, Serine/threonine protein phosphata | 1e-155 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-04 |
| >gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 450 bits (1159), Expect = e-155
Identities = 225/511 (44%), Positives = 286/511 (55%), Gaps = 69/511 (13%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
KF Q FG++ E D I+A+EFD++G +LATGD+GGRVVLFER
Sbjct: 7 ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFER----------- 55
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
S E+++ TEFQSHE EFDYLKSLEIEEKIN I W +LLSTND
Sbjct: 56 -------EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIKLWK+ EK +K V + N+ S+
Sbjct: 109 KTIKLWKIYEKNLKVVAENNL-------------------------------------SD 131
Query: 196 DSSFPPGG----VSSLRLPVVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFI 250
P GG L LP + S+ ++A R+YA+AH YHINSIS NSD ET +
Sbjct: 132 SFHSPMGGPLTSTKELLLPRL---SEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188
Query: 251 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310
SADDLRINLWNLEI + SFNIVD+KP NME+LTEVITSAEFHP CN+ YSSSKG I+L
Sbjct: 189 SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248
Query: 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 370
D+RQSALCD KLFE FF EI++SISD KF+ NGR+ILSRDY+T+K+WD+
Sbjct: 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDV 308
Query: 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430
NM P+ T +H L +L D+YEND+IFDKFE SGD V +GSYSN F ++
Sbjct: 309 NMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368
Query: 431 ---GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG---NAF 484
A + +V+ + L R + +
Sbjct: 369 SGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNL 428
Query: 485 DFSMKLLHLAWHPSENSIACAASNSLYMYYA 515
D K+LH +WHP E+S+A AA+N+L+++
Sbjct: 429 DLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459
|
Length = 460 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 70/402 (17%), Positives = 127/402 (31%), Gaps = 134/402 (33%)
Query: 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
++ + F G LATG G + ++ DLE +
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGEL----------LRT 46
Query: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155
+ H + + A+ ++DKTI+LW ++ + +
Sbjct: 47 LKGHT------------GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVR----- 87
Query: 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVT 215
H S + A + ++ +
Sbjct: 88 -----------TLTGHTSYV--------------SSVAFSPDG-----------RILSSS 111
Query: 216 SQ-------ETNLVAGCRRIYAHAHDYHINSISNNSDGETFI--SADDLRINLWNLEISN 266
S+ + + H +NS++ + DG TF+ S+ D I LW+L
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGHTDW--VNSVAFSPDG-TFVASSSQDGTIKLWDLR--- 165
Query: 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326
+ V A + T + S F P +L+ SSS G+I+L D+ T
Sbjct: 166 -TGKCV----ATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGT----L 215
Query: 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHE 384
E ++ + F+ +G + S D T+++WD+ V T H
Sbjct: 216 RGHENG------------VNSVAFSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHT 261
Query: 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426
+ S+ S DG R+A+GS R++
Sbjct: 262 N------------SVTS---LAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 3e-05
Identities = 52/288 (18%), Positives = 106/288 (36%), Gaps = 46/288 (15%)
Query: 227 RIYAHAHDYHINSISNNS-DGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDL 282
+ HD ++ ++ +S DG + + A D + LW+L + ++
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH------- 154
Query: 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342
+E +TS F P + + SS G+I+L D+R T +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH----------------T 198
Query: 343 ASISDIKFARNGRHILSRDYM--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400
+S + F+ +G +++ T++LWD++ +G + + H +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSVV---------- 246
Query: 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 460
S DG +A+GS R++ S+ TL + + +P G
Sbjct: 247 ----SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508
S G V R+ + L ++ + L++ P + + S+
Sbjct: 303 SSDGTV-RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 46/221 (20%)
Query: 226 RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284
R + H + ++ ++DG S D I LW+LE +
Sbjct: 45 RTLKGHTGP--VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------- 95
Query: 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344
++S F P +L+ SS +I++ D+ T
Sbjct: 96 -VSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTT----------------LRGHTDW 137
Query: 345 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403
++ + F+ +G + S T+KLWD+ VAT H +
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHT------------GEVNS-- 182
Query: 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 444
S DG ++ + S +++ S G TL +N
Sbjct: 183 -VAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 2e-04
Identities = 75/419 (17%), Positives = 139/419 (33%), Gaps = 67/419 (15%)
Query: 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
D I++I F G+ L +G G + L++ + L S +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL------------STNDKTIKLWKV 143
+ +K ++ IR + + ++ L S+ D TIKLW +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 144 QEKKVKKVFD---WNVHPEKAAGNGPIF---GSHVSAIPKSYMANGGCGERNFGCASND- 196
+ K V + +G + GS I ++ G S+
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245
Query: 197 -SSFPPGG---VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252
SSF P G S + + ++ R + H + S++ + DG+ S
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLS-GHSSSVLSVAFSPDGKLLASG 302
Query: 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311
D + LW+LE + ++ ++S F P +++ S G+IRL
Sbjct: 303 SSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356
Query: 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDI 370
D+R E +++ + F+ +GR + S T++LWD+
Sbjct: 357 DLRTGKP-----------------LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429
+ S + S DG +A+GS N R++
Sbjct: 400 STGS----------------LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 3e-04
Identities = 69/349 (19%), Positives = 116/349 (33%), Gaps = 76/349 (21%)
Query: 82 YSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLW 141
S S ++ P+ L E+ I I + S + L L ++D TIKLW
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGELLLSGSSDGTIKLW 92
Query: 142 KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201
+ + + G H S++ +S D +
Sbjct: 93 DLDNGEKLIKS--------------LEGLHDSSV------------SKLALSSPDGNSIL 126
Query: 202 GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL 259
SSL V + G H + S++ + DG+ S D I L
Sbjct: 127 LASSSLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 260 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 319
W+L + + T+ ++S F P ++A SS G+IRL D+ L
Sbjct: 183 WDLRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 320 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPV 377
+ + +S F+ +G + S D T++LWD+ S +
Sbjct: 235 --------------RSTLSGHSDSVVSS--FSPDGSLLASGSSDG-TIRLWDLRSSSSLL 277
Query: 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426
T H + S+ S DG +A+GS R++
Sbjct: 278 RTLSGH------------SSSVLS---VAFSPDGKLLASGSSDGTVRLW 311
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.87 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.83 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.81 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.8 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.8 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.75 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.71 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.69 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.69 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.57 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.57 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.56 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.53 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.5 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.47 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.46 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.44 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.43 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.41 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.36 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.28 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.28 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.2 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.19 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.17 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.13 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.13 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.13 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.12 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.12 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.12 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.06 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.03 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.96 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.94 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.91 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.89 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.89 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.87 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.87 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.86 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.76 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.73 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.72 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.72 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.68 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.68 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.61 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.6 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.54 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.52 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.51 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.43 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.37 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.27 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.27 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.24 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.2 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.17 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.16 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.1 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.07 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.04 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.02 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.01 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.91 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.89 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.86 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.85 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.84 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.84 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.82 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.74 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.69 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.66 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.64 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.62 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.61 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.5 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.5 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.49 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.49 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.39 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.36 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.33 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.3 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.24 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.24 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.22 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.21 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.21 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.1 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.08 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.07 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.05 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.02 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.89 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.86 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.82 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.81 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.74 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.71 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.64 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.6 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.45 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.41 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.2 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.03 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.87 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.73 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.55 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.44 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.43 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.36 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.32 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.2 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.17 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.1 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.03 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.01 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.0 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.94 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.9 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.88 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.83 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.79 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.77 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.7 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.69 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.51 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.28 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.9 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.89 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.48 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.42 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.42 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.42 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.05 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.94 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.92 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 92.91 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.72 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.5 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.35 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.26 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.16 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.05 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.77 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.77 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.2 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.98 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.55 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.08 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.04 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 88.78 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.65 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.19 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 88.14 | |
| PRK10115 | 686 | protease 2; Provisional | 88.03 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.93 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 87.85 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 87.78 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.71 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 87.18 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.76 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 86.75 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.25 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.24 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 85.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 84.86 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 84.27 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.1 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 84.07 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 84.06 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.9 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 83.49 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 83.05 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 82.01 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 81.96 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 81.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 80.41 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 80.2 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.01 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-53 Score=355.76 Aligned_cols=327 Identities=14% Similarity=0.274 Sum_probs=279.4
Q ss_pred cccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 28 AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 28 ~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.....+|.++|.|++|+|+|+.||+|+.|.++++||..+.... .+..+|.
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------------~t~KgH~------- 157 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------------FTCKGHK------- 157 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------------eeecCCc-------
Confidence 3446699999999999999999999999999999999887643 5678898
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++| +||++.|++|+.||+|++||..+++..- +
T Consensus 158 -----~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g---------------------------------~--- 194 (480)
T KOG0271|consen 158 -----NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIG---------------------------------R--- 194 (480)
T ss_pred -----cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCccc---------------------------------c---
Confidence 99999999 5678899999999999999998875211 0
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-----CCCEEEEe-CCCcEEEEe
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWN 261 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~-~d~~i~iwd 261 (515)
.+.+|...|++++|.| ..++|+++ .||+|+|||
T Consensus 195 -----------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 195 -----------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred -----------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 0478999999999965 67789998 899999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+..+...+ .+.+|+.+|+|+.|--+| +|++|+.|++|++|+...|.++.. +++|
T Consensus 234 ~~~~~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~----------------lkGH 287 (480)
T KOG0271|consen 234 TKLGTCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRE----------------LKGH 287 (480)
T ss_pred ccCceEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHh----------------hccc
Confidence 98665543 678999999999999776 999999999999999999877543 6777
Q ss_pred ccceeEEEEc-----------cCC-------------------------CEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 342 IASISDIKFA-----------RNG-------------------------RHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 342 ~~~i~~~~~s-----------~~~-------------------------~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
...|+.++++ |.+ ..|++|+| .++.+|+.....+++..+.+|.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq 367 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ 367 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh
Confidence 7888888776 223 34999987 9999999887688999999999
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
.. |..+.||||+++||++|.|..|++|+..+|+ .+.++.+|-.+|..++|+.|.++|+|||.|.
T Consensus 368 ~l---------------Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-~lasfRGHv~~VYqvawsaDsRLlVS~SkDs 431 (480)
T KOG0271|consen 368 AL---------------VNHVSFSPDGRYIASASFDKSVKLWDGRTGK-FLASFRGHVAAVYQVAWSADSRLLVSGSKDS 431 (480)
T ss_pred hh---------------eeeEEECCCccEEEEeecccceeeeeCCCcc-hhhhhhhccceeEEEEeccCccEEEEcCCCc
Confidence 87 4599999999999999999999999999985 4489999999999999999999999999999
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
++++ ++...-.+...+.+|...|.++.|+|||..+++|+.|. +.+|
T Consensus 432 TLKv---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 432 TLKV---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred eEEE---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 9999 33222234456667999999999999999999998776 5555
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=345.96 Aligned_cols=429 Identities=63% Similarity=1.000 Sum_probs=362.0
Q ss_pred ccccccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcc
Q 010206 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (515)
Q Consensus 10 ~~~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (515)
.+.....|+|.|.|+.. +...+-|++|.|.-+|.+||||+.+|+|.+|.-..... .+
T Consensus 5 ~~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~e 61 (433)
T KOG1354|consen 5 GKNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GE 61 (433)
T ss_pred Ccchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cc
Confidence 34567889999988854 66788999999999999999999999999998654331 27
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
|++...++.|+++|+|+++++++++|+.++|++..+...++..++|++|++|.+....... ...+....
T Consensus 62 y~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~~---------- 130 (433)
T KOG1354|consen 62 YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPEE---------- 130 (433)
T ss_pred eeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-cccccccc----------
Confidence 8899999999999999999999999999999998888899999999999999998765433 11111000
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
...+.-..+++.- +...+......|++.+..+|...|+++.++.|++.+
T Consensus 131 -----------------------------~~~~~~~~lr~p~--~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 131 -----------------------------GPPGTITSLRLPV--EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred -----------------------------CCCCccceeecee--eccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 0112223445444 555666777889999989999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 250 ISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 250 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++++|-.|.+|+++-..+.+++++++|..++.....|++..|+|..+++|+..+..|+|++.|+|...+|..+.+.|+.+
T Consensus 180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
..+..+.++.+..+.|..+.|++.|+|+++.+.-+|++||+.+..+++.++..|.....+++.+|++++|++.+.++|+.
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 489 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~ 489 (515)
++.+++||+..+.+++|++..+.....+++....+...-... .-+.+.++ ++..+.+..+..+++...
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~-k~~~V~~~-----------g~r~~~~~~vd~ldf~kk 407 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVL-KLRLVSSS-----------GKRKRDEISVDALDFRKK 407 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccc-cceeeecC-----------CCccccccccchhhhhhH
Confidence 999999999999999999888866666666555442111111 11112222 222223455566778899
Q ss_pred eeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 490 LLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|.+.+|+|..+.||++..+++++|++
T Consensus 408 ilh~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 408 ILHTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred HHhhccCCccceeeeeecCceEEecC
Confidence 99999999999999999999999985
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=325.65 Aligned_cols=284 Identities=20% Similarity=0.321 Sum_probs=254.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..++-..+|..+.||+|++.||||+.+|.++||+..+.. .+..|.+|.
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~--------- 217 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT--------- 217 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc---------
Confidence 356778999999999999999999999999999987654 457899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|.++.|+|..++..+++++.||++++|++.+......
T Consensus 218 ---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-------------------------------------- 256 (459)
T KOG0272|consen 218 ---SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-------------------------------------- 256 (459)
T ss_pred ---cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh--------------------------------------
Confidence 889999999875567899999999999999887531110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|..++|+|+|++|+++ -|.+-++||+++....
T Consensus 257 ----------------------------------------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El 296 (459)
T KOG0272|consen 257 ----------------------------------------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL 296 (459)
T ss_pred ----------------------------------------hhcchhhheeeeecCCCceeeecccccchhhcccccchhh
Confidence 46888999999999999999998 7999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ..++|...|.+++|+||| .++++|+.|..-+|||+|++..+ .++.+|..+|.+|
T Consensus 297 L--------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----------------m~L~gH~k~I~~V 351 (459)
T KOG0272|consen 297 L--------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----------------MFLAGHIKEILSV 351 (459)
T ss_pred H--------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEE----------------EEecccccceeeE
Confidence 4 568999999999999999 99999999999999999999763 3477899999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw 426 (515)
.|+|+|..||+|+ |++++|||+++ .+++.++.+|... |..++|+| .|.+|+|++.|++++||
T Consensus 352 ~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nl---------------VS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 352 AFSPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNL---------------VSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred eECCCceEEeecCCCCcEEEeeecc-cccceecccccch---------------hhheEecccCCeEEEEcccCcceeee
Confidence 9999999999986 49999999997 8889999999987 45899998 78899999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.-.+. .+.++|.+|.+.|-++.+++++.++++++.|.++++
T Consensus 416 s~~~~-~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 416 STRTW-SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred cCCCc-ccchhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 99988 455899999999999999999999999999999998
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=313.24 Aligned_cols=297 Identities=16% Similarity=0.267 Sum_probs=252.1
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeee
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (515)
-|++.. +.....-.+|...|.|++|+|||+.||+|+.||.|++||..+++.. -..
T Consensus 141 ~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~----------------------g~~ 195 (480)
T KOG0271|consen 141 LWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI----------------------GRA 195 (480)
T ss_pred eeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc----------------------ccc
Confidence 477753 2233334689999999999999999999999999999999988764 345
Q ss_pred cccCCCcccccccccccceeEEEEEee---cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 96 FQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~l~~~~---~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
+.+|. ..|++++|-| .++..+|++++.||.++|||+..+.....
T Consensus 196 l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--------------------- 242 (480)
T KOG0271|consen 196 LRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--------------------- 242 (480)
T ss_pred ccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE---------------------
Confidence 88998 8999999977 45567899999999999999887653322
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+.+|...|+|+.|.-+| +|++|
T Consensus 243 ---------------------------------------------------------lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 243 ---------------------------------------------------------LSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred ---------------------------------------------------------eccCccceEEEEEcCCc-eEEec
Confidence 46899999999998766 77777
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-----------cCC------------------------C
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------C 296 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----------p~~------------------------~ 296 (515)
.|++|++|+...+.... .+.+|...|+.++.+ |.+ +
T Consensus 265 S~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~ 336 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG 336 (480)
T ss_pred CCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence 89999999998765442 678999999988877 222 1
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..|++|+.|.++.+|+....+.. ..-+.+|..-|+.+.||||++++|+++- ..|++||.++ ++
T Consensus 337 erlVSgsDd~tlflW~p~~~kkp---------------i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-Gk 400 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKP---------------ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-GK 400 (480)
T ss_pred ceeEEecCCceEEEecccccccc---------------hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-cc
Confidence 25999999999999997654321 1226889999999999999999999985 9999999997 99
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.+.+|++|-.. |+.++|+.|.++|++||.|.++++|++++. ++...|.+|.+.|.++.|+|||+
T Consensus 401 ~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 401 FLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred hhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCCc
Confidence 99999999877 569999999999999999999999999986 67789999999999999999999
Q ss_pred eeEeecCCCeEEE
Q 010206 456 SRPLGSLSGVVRR 468 (515)
Q Consensus 456 ~l~s~~~d~~v~l 468 (515)
.+++|+.|+.+++
T Consensus 465 rV~sggkdkv~~l 477 (480)
T KOG0271|consen 465 RVASGGKDKVLRL 477 (480)
T ss_pred eeecCCCceEEEe
Confidence 9999999999998
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=302.08 Aligned_cols=431 Identities=16% Similarity=0.159 Sum_probs=308.6
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCc-ccCccccCcccccccccCCccceeeeecccCCCccc----
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD---- 104 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---- 104 (515)
.+.+|..+++-..|||.|.|+|+|...|.|+|||....+ .++...+.+.+...++.|+++.+.+.....-...|-
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 356899999999999999999999999999999987743 332333455566668888887766543211111110
Q ss_pred --cccc----ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCce
Q 010206 105 --YLKS----LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (515)
Q Consensus 105 --~~~~----~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (515)
.-.+ ..|...|+++.|-|+.+ =++++++.|++|.+|+=..-+.+.....+ +.-|. ++.
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~H--------skFV~-------~VR 197 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREH--------SKFVN-------CVR 197 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeeccccc--------cccee-------eEE
Confidence 0000 02448899999987665 47999999999999986665554443333 11222 889
Q ss_pred eecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee--eccCcCCeEEEEecCCCCEEEEe-CCC
Q 010206 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDL 255 (515)
Q Consensus 179 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~-~d~ 255 (515)
|+|||... ++.+.||.+.+|| -.+.+. ...+ ..+|.+.|.+++|+||++.|+++ .|.
T Consensus 198 ysPDG~~F------------at~gsDgki~iyD--Gktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 198 YSPDGSRF------------ATAGSDGKIYIYD--GKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ECCCCCeE------------EEecCCccEEEEc--CCCccE------EEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 99999998 9999999999999 333332 2221 25899999999999999999998 899
Q ss_pred cEEEEeCCCCCccccee--------------------c---------------ccCccccccCCceEEEEEecCCCcEEE
Q 010206 256 RINLWNLEISNQSFNIV--------------------D---------------VKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~--------------------~---------------~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
+++|||+.+.+...++. . ..+..+.+|...|+++..+|++ ..|+
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~ 336 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY 336 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE
Confidence 99999998764221110 0 0124567899999999999999 9999
Q ss_pred EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC-------
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD------- 373 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~------- 373 (515)
+|+.||.|.-||..++.... ..-.+|...|.+++-+..+.++..|-|.++++.++...
T Consensus 337 SgsyDG~I~~W~~~~g~~~~---------------~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDR---------------LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred eeccCceEEEEecCCccccc---------------cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 99999999999998876421 01256778899999987777777776789999877421
Q ss_pred ----CCCeeeEeeeccc------ccc------ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC-ccee
Q 010206 374 ----SGPVATFQVHEHL------RPK------LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AEST 436 (515)
Q Consensus 374 ----~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~-~~~~ 436 (515)
.+|...-....+. ... .......+..+...+++++|+++.++.|+.|+.|+||.+..+. +...
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~ 481 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA 481 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence 1111110000000 000 0011111223345689999999999999999999999998654 2335
Q ss_pred eeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc-cccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 437 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 437 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+..|..+++.++++||+.+||++...+.+.+++-... +...... -|.++|.+++|+|+..++|+|+ +..++||+
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~---~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR---EVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC---ceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 77899999999999999999999999999999332221 2222233 3899999999999999999999 56699987
Q ss_pred C
Q 010206 515 A 515 (515)
Q Consensus 515 ~ 515 (515)
.
T Consensus 559 v 559 (603)
T KOG0318|consen 559 V 559 (603)
T ss_pred c
Confidence 3
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=297.58 Aligned_cols=439 Identities=50% Similarity=0.765 Sum_probs=347.1
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
-.|+|+||||++.........+.|+++.|...|.|||+|...|+|.+|...... .-+|++..
T Consensus 6 ~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~t 67 (460)
T COG5170 6 EILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFFT 67 (460)
T ss_pred hhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhhh
Confidence 469999999999999999999999999999999999999999999999865432 34788999
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
+|++|+++|+|+++++++++|+.|.|+.......++..+.|++|++|.+....++.+.+.+....
T Consensus 68 eFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~--------------- 132 (460)
T COG5170 68 EFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS--------------- 132 (460)
T ss_pred hhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc---------------
Confidence 99999999999999999999999999876666789999999999999999876655544443221
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCC
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d 254 (515)
+. +|-+..+ .....+++.. +..........+.+.+...|...|+++.|+.|.+.+++++|
T Consensus 133 --~~-~~~~g~~---------------~s~~~l~lpr--ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd 192 (460)
T COG5170 133 --FH-SPMGGPL---------------TSTKELLLPR--LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD 192 (460)
T ss_pred --cc-cccCCCc---------------CCHHHhhccc--ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence 11 1111111 0111222222 22223333345566666889999999999999999999999
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
-.|.+|+++.....+.+++++|..++.....|++..|+|..++.+...+..|.|++-|+|...+|....+.++....+..
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 99999999999999999999999999889999999999998889999999999999999999888887777777777777
Q ss_pred cccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 335 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..++.+..+.|..+.|+++|+++++.+.-+++|||+++...++++...|......++..|++++|++.+.+.||.|.+.+
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v 352 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHV 352 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccc
Confidence 77888888999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEEecCCCCcc----eeeeccCCCce---eeE--------EECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 415 ATGSYSNLFRVFGCSEGSAE----STTLEASKNPM---RRQ--------VQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~----~~~~~~~~~~v---~~~--------~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
.+|+..+..-+|-..+.+.. +..+..+..+- .+. ....+.....+.+.+|.+.. + .
T Consensus 353 ~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~-------e 423 (460)
T COG5170 353 LSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--C-------E 423 (460)
T ss_pred cccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--c-------c
Confidence 99999988888875443221 11222221111 111 11111222444555555544 1 1
Q ss_pred CCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 480 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
....+.+...|.+..|+|-..-+|++..+++++|++
T Consensus 424 D~d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 424 DPDNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred CcchhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence 112334567899999999999999999999999985
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=291.64 Aligned_cols=279 Identities=17% Similarity=0.222 Sum_probs=238.4
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+|..+.| +.++..|++|+.+|.+++|+..+......
T Consensus 175 ~rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~---------------------------------------- 212 (459)
T KOG0272|consen 175 TRPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT---------------------------------------- 212 (459)
T ss_pred CCcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE----------------------------------------
Confidence 367888888 56677999999999999999876532221
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.++.|+|. +..|++| .||++++|++.+....
T Consensus 213 --------------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l 254 (459)
T KOG0272|consen 213 --------------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL 254 (459)
T ss_pred --------------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch
Confidence 4689999999999997 6689998 8999999999866544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+++|...|..++|+|+| ++|++++.|.+-++||++++..... ..||...|.++
T Consensus 255 ~--------~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~----------------QEGHs~~v~~i 309 (459)
T KOG0272|consen 255 Q--------DLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLL----------------QEGHSKGVFSI 309 (459)
T ss_pred h--------hhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHh----------------hccccccccee
Confidence 2 778999999999999999 9999999999999999999875321 47899999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|.|||.++++|+ |..-+|||+++ ++++-.+.+|... |.+++|+|+|..|||||.|++++|||
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred EecCCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEee
Confidence 9999999999987 58889999998 9999999998765 56999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
++... ...++.+|.+-|+.+.|+| .|.+|++++.|++++++. .........+.+|.+.|.+++.+||+.+|++++
T Consensus 374 LR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs---~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 374 LRMRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS---TRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecccc-cceecccccchhhheEecccCCeEEEEcccCcceeeec---CCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 99764 4689999999999999998 788999999999999922 222223335567999999999999999999887
Q ss_pred -CCcEEEEeC
Q 010206 507 -SNSLYMYYA 515 (515)
Q Consensus 507 -~~~~~i~~~ 515 (515)
+..+.+|+.
T Consensus 450 ~DRT~KLW~~ 459 (459)
T KOG0272|consen 450 FDRTIKLWRP 459 (459)
T ss_pred cCceeeeccC
Confidence 667999964
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=301.36 Aligned_cols=415 Identities=14% Similarity=0.161 Sum_probs=308.8
Q ss_pred ccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee
Q 010206 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (515)
.++|.+.. +.....-...|..||.-++|+|.|.+||+|+.||.|+|||+..+. +.
T Consensus 86 lrv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~t 140 (775)
T KOG0319|consen 86 LRVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CT 140 (775)
T ss_pred EEEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EE
Confidence 34566654 222222233599999999999999999999999999999998765 55
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..|.+|. +.|.++.|.|..+...|++|..|+++++||+..... ......+. ..+.
T Consensus 141 h~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~--------S~vt---- 196 (775)
T KOG0319|consen 141 HSFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK--------SAVT---- 196 (775)
T ss_pred EEecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh--------hhee----
Confidence 7899998 999999999988877899999999999999996543 22222221 1222
Q ss_pred cCCCceeecCCCcccccc----------------------------c------cCCCCCCCCCCCcccEEeeeeeecccc
Q 010206 173 SAIPKSYMANGGCGERNF----------------------------G------CASNDSSFPPGGVSSLRLPVVVVTSQE 218 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~----------------------------~------~~~~~~~~~~~~~~~i~i~d~~~~~~~ 218 (515)
++++++|+..+-... . .....++++.+.+|.+++||.. ...
T Consensus 197 ---sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~e--s~~ 271 (775)
T KOG0319|consen 197 ---SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSE--SGK 271 (775)
T ss_pred ---eeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecc--cch
Confidence 556666654321100 0 0012466777788888887732 110
Q ss_pred cc-----c------------------------------------------------------------------------
Q 010206 219 TN-----L------------------------------------------------------------------------ 221 (515)
Q Consensus 219 ~~-----~------------------------------------------------------------------------ 221 (515)
.. .
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 00 0
Q ss_pred -ccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE
Q 010206 222 -VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 222 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
........+.+|...|.++....+|.+|++| .|.++++|.++........+ ....+|...|.+++++..+..+|
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~----a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV----AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh----hhhcccccccceeeecccCccEE
Confidence 0000011246888889999877778899998 79999999885333221111 25578999999999998888899
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCee
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~ 378 (515)
++++.|+++++|++...+.... ...+. .......|...|++++++|+.+++++|+. .+.+||++.. .....
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~ 499 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLG 499 (775)
T ss_pred EEecCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEE
Confidence 9999999999999987332111 11111 11234668899999999999999999986 9999999994 88999
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
++.+|... |+++.|+|..+.|+|+|.|++|+||.+.+.+++ +++++|...|-...|-.+++.|+
T Consensus 500 vLsGH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 500 VLSGHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred EeeCCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEE
Confidence 99999854 779999999999999999999999999998666 89999999999999999999999
Q ss_pred eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 459 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 459 s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
|++.||-+++ |+....+-....-.|...|.+++-+|....+++|+.|+.++|
T Consensus 564 S~~adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~ 615 (775)
T KOG0319|consen 564 SAGADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIF 615 (775)
T ss_pred eccCCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEE
Confidence 9999999999 433322222333469999999999999999999988885554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=296.39 Aligned_cols=385 Identities=16% Similarity=0.219 Sum_probs=293.2
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|-+.|+++.|+.|.++|++|+.|-.++||.+...+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 5689999999999999999999999999999999866532 345688898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEee-----------ccCCcccC--------CCCCCccCCC
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFD-----------WNVHPEKA--------AGNGPIFGSH 171 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~--------~~~~~v~~~~ 171 (515)
..|-+.-| ..+...+++.+.||.+.+|............ ........ ..........
T Consensus 190 --d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 190 --DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred --cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 88999888 5666789999999999999877221000000 00000000 0000000000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
...+..+|.+.-..| +++-..|...+|+ +.+. .+... +.-...+|..++|+..|.+|+.
T Consensus 266 ~kvtaa~fH~~t~~l------------vvgFssG~f~Lye--lP~f------~lih~-LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLL------------VVGFSSGEFGLYE--LPDF------NLIHS-LSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred cceeeeeccCCceEE------------EEEecCCeeEEEe--cCCc------eEEEE-eecccceeeEEEecccCCEEEE
Confidence 111133444444444 8888999998888 3322 22222 2334578999999999999999
Q ss_pred e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 252 A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 252 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
| .-|.+.+|+..+..-.. +.++|...+++++++||| +++++|+.||.|++||...+.+..
T Consensus 325 g~~klgQLlVweWqsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~v--------- 386 (893)
T KOG0291|consen 325 GCSKLGQLLVWEWQSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFV--------- 386 (893)
T ss_pred cCCccceEEEEEeeccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEE---------
Confidence 7 46899999998665443 568899999999999999 999999999999999999887632
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
++..|++.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+.... ..+++..
T Consensus 387 -------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD 444 (893)
T KOG0291|consen 387 -------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVD 444 (893)
T ss_pred -------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEc
Confidence 2677889999999999999999987 59999999997 88888887765431 2378999
Q ss_pred CCCCEEEEecCCC-cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 409 GDGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 409 ~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
|.|.+++.|+.|. .|.+|++++| +++..|.+|..||..+.|+|.+..|+|+|+|++||+ |.........+.+.+.
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIR 520 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeec
Confidence 9999999999776 7999999998 677899999999999999999999999999999999 3333222233455567
Q ss_pred CCeeEEEEcCCCCEEEEEcCC-cEEEEeC
Q 010206 488 MKLLHLAWHPSENSIACAASN-SLYMYYA 515 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~-~~~i~~~ 515 (515)
..++.++|+|||+.||+++-+ .+-+|++
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 899999999999999999977 5777753
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=267.50 Aligned_cols=293 Identities=16% Similarity=0.217 Sum_probs=245.5
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+++|. .+|.++.| ..|.+++++++.||.+.|||..+........+. ...|-
T Consensus 48 rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVM---- 101 (343)
T KOG0286|consen 48 RRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVM---- 101 (343)
T ss_pred EEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEE----
Confidence 35689998 99999999 567789999999999999999887666655544 44554
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
..+|+|.|+.+ +.|+-|+.-.||+ +...+..-. ......+.+|.+.+.|+.|-+|+++|.++
T Consensus 102 ---tCA~sPSg~~V------------AcGGLdN~Csiy~--ls~~d~~g~-~~v~r~l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 102 ---TCAYSPSGNFV------------ACGGLDNKCSIYP--LSTRDAEGN-VRVSRELAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ---EEEECCCCCeE------------EecCcCceeEEEe--ccccccccc-ceeeeeecCccceeEEEEEcCCCceEecC
Confidence 77999999998 9999999999999 443322211 22233368999999999999876555444
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.|.++.+||++++++.. .+.+|.+.|.++.++|..++.|++|+-|+..++||+|.+..+.
T Consensus 164 GD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q------------ 223 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ------------ 223 (343)
T ss_pred CCceEEEEEcccceEEE--------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeE------------
Confidence 89999999999887653 6789999999999999334999999999999999999986532
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.|.+|.+.|+++.|.|+|.-+++|+| ++.++||++. .+.+..+... ..+.+|++++||..|
T Consensus 224 ----tF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~-------------~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 224 ----TFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHD-------------SIICGITSVAFSKSG 285 (343)
T ss_pred ----eecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccC-------------cccCCceeEEEcccc
Confidence 37788899999999999999999987 9999999996 7777777632 234457899999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++|++|..|..+.+||.-.+ .....|.+|.+.|.++..+|||.-+++||+|.++||
T Consensus 286 RlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred cEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 99999999999999998766 566899999999999999999999999999999998
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=253.56 Aligned_cols=299 Identities=14% Similarity=0.223 Sum_probs=237.3
Q ss_pred cccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
...+|.+.|+.++..+. .+.+++++.|..+.+|++...... .......+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~------------------~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK------------------YGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc------------------cCceeeeeeccc--------
Confidence 45689999999999996 568889999999999998765431 334567788888
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|..+.. ++++++.++++.|+++++||+.+++....+..+.. .+. +++|++|.+.+
T Consensus 64 ----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~--------dVl-------sva~s~dn~qi-- 120 (315)
T KOG0279|consen 64 ----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK--------DVL-------SVAFSTDNRQI-- 120 (315)
T ss_pred ----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecCC--------ceE-------EEEecCCCcee--
Confidence 78999999 66788999999999999999999877666665532 233 88999999999
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSD--GETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~ 264 (515)
++|+.|.+|++|+ ... .+..+.. ..+...|.|+.|+|+ ..+|+++ .|++|++||+++
T Consensus 121 ----------vSGSrDkTiklwn--t~g-------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 121 ----------VSGSRDKTIKLWN--TLG-------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ----------ecCCCcceeeeee--ecc-------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 9999999999999 222 2222222 233789999999998 6788887 899999999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
-+... .+.+|++.++.++++||| .++++|+.||.+.+||++.++.+ +. .+|...
T Consensus 182 ~~l~~--------~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~l----ys-------------l~a~~~ 235 (315)
T KOG0279|consen 182 CQLRT--------TFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKNL----YS-------------LEAFDI 235 (315)
T ss_pred cchhh--------ccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCcee----Ee-------------ccCCCe
Confidence 55432 678899999999999999 99999999999999999988753 22 334478
Q ss_pred eeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 345 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
|.+++|+|+.-.|+.+.+..|+|||+.. +..+..+....... ........ ..+++|++||+.|++|-.|+.|+
T Consensus 236 v~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~--s~~~~~~~----clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGP--SSKAGDPI----CLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred EeeEEecCCceeEeeccCCceEEEeccc-hhhhhhcccccccc--ccccCCcE----EEEEEEcCCCcEEEeeecCCcEE
Confidence 9999999998888888887899999996 77776665433211 00000001 24799999999999999999999
Q ss_pred EEecC
Q 010206 425 VFGCS 429 (515)
Q Consensus 425 iw~~~ 429 (515)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=268.52 Aligned_cols=386 Identities=14% Similarity=0.198 Sum_probs=286.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc---cCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~~ 107 (515)
...|..-|.|+.|+|||+++|+.+.||.|.+||=.+++.+ ..+. +|.
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk------- 235 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK------- 235 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc-------
Confidence 3468999999999999999999999999999998888754 3333 677
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
+.|.++.| +||+..+++++.|.++++||+.+.++.....+..... ..+- ...
T Consensus 236 -----GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~-dqqv-----------G~l--------- 287 (603)
T KOG0318|consen 236 -----GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE-DQQV-----------GCL--------- 287 (603)
T ss_pred -----ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCchh-ceEE-----------EEE---------
Confidence 99999999 5678899999999999999999998777665542210 0000 111
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+.+|.+++-+.+|.|.+++ ..+.+ ..+. +.+|...|+++..++++++|.+| .||.|.-||..++.
T Consensus 288 -----Wqkd~lItVSl~G~in~ln--~~d~~------~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 288 -----WQKDHLITVSLSGTINYLN--PSDPS------VLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred -----EeCCeEEEEEcCcEEEEec--ccCCC------hhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 2244447888889999877 22222 2222 48999999999999999999999 79999999998776
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc-------cceeeeccCC-------
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------SKLFEEQEAP------- 332 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------~~~~~~~~~~------- 332 (515)
...- .-+.|...|.+++.+..+ .+++.+.|.++++.++......... .+.+......
T Consensus 354 ~~~~-------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 354 SDRL-------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred cccc-------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 4411 126699999999998765 6788999999999987544321110 0001000000
Q ss_pred -Cccccccc--------cccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCcc
Q 010206 333 -GTRSFFTE--------IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 333 -~~~~~~~~--------~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
....++.. ..-...+++++|++..++.|.. +.|+||.+.- ... ...+..|...
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~~h~a~-------------- 489 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLLEHRAA-------------- 489 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-CcccceeeeecccCC--------------
Confidence 00011111 1234678999999999999875 9999999984 332 2234444443
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
++.+++|||+.|||+|...+.+.+||+.+.......+--|...|.+++|+|+.+.+|+||.|-.|.+++-.++.. ..
T Consensus 490 -iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~--~i 566 (603)
T KOG0318|consen 490 -ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK--HI 566 (603)
T ss_pred -ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh--he
Confidence 569999999999999999999999999988665566778999999999999999999999999999966666653 22
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
...-.|...|+.++|-.+...+-+|.+-.+.+|+.
T Consensus 567 ~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 567 IIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EeccccccCceeEEEecCceEEeccCcceeEEecc
Confidence 22235777799999988777777888888999973
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=246.99 Aligned_cols=267 Identities=15% Similarity=0.223 Sum_probs=217.2
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCc
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 127 (515)
-+||+++.|.+|++|...++.. ..+++..+ ..|+.+.. .+++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C-----------------------~rTiqh~d------------sqVNrLei--Tpdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC-----------------------SRTIQHPD------------SQVNRLEI--TPDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE-----------------------EEEEecCc------------cceeeEEE--cCCcc
Confidence 4899999999999999998874 45555554 77999999 55666
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
.|++++. ..||+||+++++...+
T Consensus 54 ~LAaa~~-qhvRlyD~~S~np~Pv-------------------------------------------------------- 76 (311)
T KOG0315|consen 54 DLAAAGN-QHVRLYDLNSNNPNPV-------------------------------------------------------- 76 (311)
T ss_pred hhhhccC-CeeEEEEccCCCCCce--------------------------------------------------------
Confidence 7777665 6799999988753221
Q ss_pred EeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
.. ..+|...|.++.|..+|+++.+| +||+++|||++..... ....|..+|
T Consensus 77 -------------------~t-~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spV 127 (311)
T KOG0315|consen 77 -------------------AT-FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPV 127 (311)
T ss_pred -------------------eE-EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCc
Confidence 11 35788999999999999999999 8999999999975433 334578999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 365 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i 365 (515)
+++..+|+. ..|++|..+|.|++||+.+.....+. +..-..+|.++...|||.+|+++.. |..
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~l---------------iPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHEL---------------IPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCcccccc---------------CCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 999999997 89999999999999999886432211 1111257999999999999999987 999
Q ss_pred EEEEeeC-----CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 366 KLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 366 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
++|++-. .-.++..++.|... +..+.+|||+++||++|.|.+++||+.++.-++...+++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999864 12345556666654 458999999999999999999999999876345578899
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|...+...+||.+++||++|+.|+.+++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceee
Confidence 9999999999999999999999999999
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=273.42 Aligned_cols=403 Identities=15% Similarity=0.213 Sum_probs=290.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|+++|-++-|..+...|.+-+.||.+.+|.......... ...-+..+.. .-+..-..+-..|...+.-.+..
T Consensus 184 ~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~-~~~kd~eg~~---d~~~~~~~Eek~~~~~~~k~~k~ 259 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELD-KAEKDEEGSD---DEEMDEDGEEKTHKIFWYKTKKH 259 (893)
T ss_pred eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccc-cccccccccc---cccccccchhhhcceEEEEEEee
Confidence 3468999999999999999999999999999999873321100 0000000000 00000000000000000000000
Q ss_pred ---cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 110 ---EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 110 ---~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.-...|++.+|++. ...|+++-..|...+|.+..-.+......... .+. .++++..|..+
T Consensus 260 ~ln~~~~kvtaa~fH~~--t~~lvvgFssG~f~LyelP~f~lih~LSis~~--------~I~-------t~~~N~tGDWi 322 (893)
T KOG0291|consen 260 YLNQNSSKVTAAAFHKG--TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--------KIL-------TVSFNSTGDWI 322 (893)
T ss_pred eecccccceeeeeccCC--ceEEEEEecCCeeEEEecCCceEEEEeecccc--------eee-------EEEecccCCEE
Confidence 01267999999664 44889998999999999999887776665422 222 67788888887
Q ss_pred ccccccCCCCCCCCCCC-cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGG-VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
+.|+. -|.+.+|+ |..+.... . .++|...+.+++++|||+++++| +||.|++||...
T Consensus 323 ------------A~g~~klgQLlVwe---WqsEsYVl-----K-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 323 ------------AFGCSKLGQLLVWE---WQSESYVL-----K-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred ------------EEcCCccceEEEEE---eeccceee-----e-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 55554 48999998 43333111 1 36899999999999999999999 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+-+.. ++..|+..|+.+.|+..+ +.+++.+.||+|+.||+..... .++|..++. ..
T Consensus 382 gfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~Q 437 (893)
T KOG0291|consen 382 GFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQ 437 (893)
T ss_pred ceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------ee
Confidence 65543 778899999999999999 9999999999999999977643 345554432 34
Q ss_pred eeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|++..|.|..+.+|+ | -.|.+|++.+ ++.+..+.+|+++ |.+++|+|++..|+++|.|.+
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgP---------------Vs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGP---------------VSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCc---------------ceeeEEccccCeEEeccccce
Confidence 67889999999999986 4 7899999998 9999999999988 448999999999999999999
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe-----------cCCC------CCccccCCcccc
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----------KGAD------NSALDANGNAFD 485 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-----------~~~~------~~~~~~~~~~~~ 485 (515)
|++||+-.......++ .+...+..+.|.|+|+-|+++..||.|.++ +|.+ .....+..+.-.
T Consensus 502 VRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 9999997653343333 456678899999999999999999999981 1111 111111122223
Q ss_pred ccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
-....+.+.+|+||+.|++|+ .+.++||++
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 346789999999999988776 567999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=249.33 Aligned_cols=287 Identities=19% Similarity=0.319 Sum_probs=228.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|.++.|++|.++|++++.||.+.|||.-+..+. ..+.-..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s--------- 97 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS--------- 97 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc---------
Confidence 35689999999999999999999999999999997665432 1111112
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee----EEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|...+|+|+ +++++.|+-|+...||++.+.+. .....+..+ .+.+. ...|.+|+..
T Consensus 98 ---~WVMtCA~sPS--g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH------tgylS-------cC~f~dD~~i 159 (343)
T KOG0286|consen 98 ---SWVMTCAYSPS--GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH------TGYLS-------CCRFLDDNHI 159 (343)
T ss_pred ---eeEEEEEECCC--CCeEEecCcCceeEEEecccccccccceeeeeecCc------cceeE-------EEEEcCCCce
Confidence 77999999665 66999999999999999985521 111111111 12222 4556665554
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~ 263 (515)
++++.|.+..+|| +.. ++.... +.+|.+.|.+++++| +++.|++| .|+..++||++
T Consensus 160 -------------lT~SGD~TCalWD--ie~------g~~~~~-f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 160 -------------LTGSGDMTCALWD--IET------GQQTQV-FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred -------------EecCCCceEEEEE--ccc------ceEEEE-ecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 8999999999999 333 333334 479999999999999 99999998 79999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
.+.... .+.+|...|++++|.|+| .-|++|+.|++.|+||+|..+.+. .|... ....
T Consensus 218 ~~~c~q--------tF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~a----~ys~~----------~~~~ 274 (343)
T KOG0286|consen 218 SGQCVQ--------TFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQELA----VYSHD----------SIIC 274 (343)
T ss_pred CcceeE--------eecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEEe----eeccC----------cccC
Confidence 875442 789999999999999999 999999999999999999876532 22211 1226
Q ss_pred ceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+|++++||..|++|++|- |.++.+||.-. ++.+..+.+|++. |.++..+|||.-|+|||.|..
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNR---------------vScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENR---------------VSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCe---------------eEEEEECCCCcEEEecchhHh
Confidence 899999999999999975 49999999986 8888999999876 559999999999999999999
Q ss_pred EEEEe
Q 010206 423 FRVFG 427 (515)
Q Consensus 423 i~iw~ 427 (515)
++||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=264.68 Aligned_cols=283 Identities=19% Similarity=0.358 Sum_probs=234.1
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...-...|++++|+.+|..||+|+.||.++||+..... ..++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC----------
Confidence 44556789999999999999999999999999976543 35678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.++.| +..|.+|++++.|+++.+||..++.....+.++..+. + .+.|-.+
T Consensus 277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~-------l--------DVdW~~~-------- 329 (524)
T KOG0273|consen 277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA-------L--------DVDWQSN-------- 329 (524)
T ss_pred --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc-------c--------ceEEecC--------
Confidence 99999999 6778899999999999999999999888877663320 0 2333333
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+-+++.+.++.|+++.| .. ..+..++ .+|.+.|.++.|+|.+.+|+++ +|++++||.........
T Consensus 330 -----~~F~ts~td~~i~V~kv--~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 330 -----DEFATSSTDGCIHVCKV--GE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred -----ceEeecCCCceEEEEEe--cC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 33488999999999883 22 2233443 6799999999999999999999 89999999987555432
Q ss_pred ceecccCccccccCCceEEEEEecCCC--------cEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.+.+|...|+.+.|+|+|+ ..+++++.|+++++||+..+..+. .+..|
T Consensus 396 --------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~----------------~f~kH 451 (524)
T KOG0273|consen 396 --------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH----------------TLMKH 451 (524)
T ss_pred --------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE----------------eeccC
Confidence 6788999999999999764 479999999999999999887643 26678
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
..+|++++|+|+|+++++|+- |.|.+|+.+. ++.++.+.+... |+.++|+.+|.+|..+-.|
T Consensus 452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecC
Confidence 899999999999999999985 9999999997 888888876543 4589999999999999999
Q ss_pred CcEEEEecC
Q 010206 421 NLFRVFGCS 429 (515)
Q Consensus 421 g~i~iw~~~ 429 (515)
+.+.+-|++
T Consensus 515 ~~vcvldlr 523 (524)
T KOG0273|consen 515 GSVCVLDLR 523 (524)
T ss_pred CCceEEEec
Confidence 999998875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=269.22 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=240.3
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
.-+|..|.|.|+|+.|++|+..|.+.+|+.. .+.+...+++|+ ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhc------------cc
Confidence 4589999999999999999999999999964 334556788998 99
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|+++.| +.++.++++|..+|.|++|+......+.
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk~-------------------------------------------- 174 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVKI-------------------------------------------- 174 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhHH--------------------------------------------
Confidence 999999 5567799999999999999876432110
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+...|...|++++|+|....|+++ +||+|+|||....++..
T Consensus 175 ----------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~---- 216 (464)
T KOG0284|consen 175 ----------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER---- 216 (464)
T ss_pred ----------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh----
Confidence 013455899999999999999998 89999999998776543
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+.+|.-.|.+++|+|.- .++++|+.|..|++||.+++.++.. +.+|+..|..+.|+|+
T Consensus 217 ----vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~t----------------lh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 217 ----VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLAT----------------LHGHKNTVLAVKFNPN 275 (464)
T ss_pred ----eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhh----------------hhhccceEEEEEEcCC
Confidence 668999999999999997 8999999999999999999987543 6788899999999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+++|++++. ..++++|+++ .+.+.++++|... |+++.|+|- ..+|.+|+.||.|..|.+...
T Consensus 276 ~N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred CCeeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEecccc
Confidence 999999875 9999999996 8889999999866 569999994 567889999999999999855
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+...-.+|...|++++++|-|..|++|+.|.++++
T Consensus 340 ~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 340 EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred ccccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 5555666799999999999999999999999999999
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=276.30 Aligned_cols=382 Identities=14% Similarity=0.169 Sum_probs=291.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (515)
..+..+.+++++.+||+++|++++....+++|++.+++. ..++.. |+
T Consensus 58 ~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He--------- 105 (775)
T KOG0319|consen 58 SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE--------- 105 (775)
T ss_pred CccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC---------
Confidence 345567899999999999999999999999999988764 355666 77
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.+|.-++|.| .+..+++|+.|+.+++||+..+.+...+... .|.+. ++.|.|+-..
T Consensus 106 ---~Pvi~ma~~~--~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--------gGvVs-------sl~F~~~~~~---- 161 (775)
T KOG0319|consen 106 ---APVITMAFDP--TGTLLATGGADGRVKVWDIKNGYCTHSFKGH--------GGVVS-------SLLFHPHWNR---- 161 (775)
T ss_pred ---CCeEEEEEcC--CCceEEeccccceEEEEEeeCCEEEEEecCC--------CceEE-------EEEeCCccch----
Confidence 8999999955 4579999999999999999999888777665 23443 6777776654
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.++++|..|+.+++|| +..... +... +..|...|++++|++|+..++++ .|..+.+||+.+-+..
T Consensus 162 ------~lL~sg~~D~~v~vwn--l~~~~t-----cl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 162 ------WLLASGATDGTVRVWN--LNDKRT-----CLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred ------hheeecCCCceEEEEE--cccCch-----HHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 2349999999999999 442222 2222 47899999999999998888886 7888999987532000
Q ss_pred --------------------------------------------------------------------------------
Q 010206 269 -------------------------------------------------------------------------------- 268 (515)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (515)
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence
Q ss_pred ----------------------------------------cceecc---cCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 269 ----------------------------------------FNIVDV---KPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 269 ----------------------------------------~~~~~~---~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
.++.+. ...-+.+|.+.|.++....+| .+|++|+.|
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD 386 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKD 386 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCC
Confidence 000000 112356888899999866666 799999999
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEc-CCeEEEEEeeCC--CCCee---
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMD--SGPVA--- 378 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~-~~~i~iwd~~~~--~~~~~--- 378 (515)
.++++|.+.++...... .....+|...|.+++++..+ .+|++++ |+++++|++... .....
T Consensus 387 ~svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ceEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 99999998544321100 11257788999999998754 4677765 599999999751 11111
Q ss_pred ---eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 379 ---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 379 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
+...|+. +|.+++++|+.+++||||.|.+.+||+++.. .+..+|.+|...+.++.|+|..+
T Consensus 455 ~~~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 455 CRYTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred hhHHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccc
Confidence 1122332 2559999999999999999999999999955 66699999999999999999999
Q ss_pred eeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 456 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.++++|.|++|+| |.+....-..+.-+|...|..++|-.+++.|++++.+| +.+|+
T Consensus 519 ~laT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 519 LLATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeEeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999 55543334445557999999999999999999888777 78886
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=242.83 Aligned_cols=293 Identities=18% Similarity=0.244 Sum_probs=229.0
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
...++.+|. +.|+.++..+. +.+.+++++.|.++.+|++......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~---------------------- 51 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIK---------------------- 51 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCccc----------------------
Confidence 445688898 88999999876 4568999999999999998764200
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+.+.+. +.+|...|..+..++|+++.++
T Consensus 52 --------------------------------------------------~G~~~r~-~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 52 --------------------------------------------------YGVPVRR-LTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred --------------------------------------------------cCceeee-eeccceEecceEEccCCceEEe
Confidence 0122223 4789999999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+++++||+.+++... .+.+|...|.+++|+||+ +.+++|+.|.+|++|++...... ...+
T Consensus 81 ~swD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~-------t~~~ 144 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKY-------TIHE 144 (315)
T ss_pred ccccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEE-------EEec
Confidence 8 89999999999875443 678999999999999998 99999999999999998765421 1110
Q ss_pred CCCccccccccccceeEEEEccC--CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+...|.|+.|+|+ ..+|++++. ++|++||+++ .+....+.+|.+. ++.+++
T Consensus 145 --------~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~---------------v~t~~v 200 (315)
T KOG0279|consen 145 --------DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGY---------------VNTVTV 200 (315)
T ss_pred --------CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhcccccccc---------------EEEEEE
Confidence 112578999999997 678888775 9999999996 8888888888876 458999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccccCCcccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~ 485 (515)
||||..+++|+.||.+.+||++.++++ ....|..+|.+++|+|+..+|+.+...+ |++ .+..... .++..+..+
T Consensus 201 SpDGslcasGgkdg~~~LwdL~~~k~l--ysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l~~d~~g 276 (315)
T KOG0279|consen 201 SPDGSLCASGGKDGEAMLWDLNEGKNL--YSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EELKLDGIG 276 (315)
T ss_pred CCCCCEEecCCCCceEEEEEccCCcee--EeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhccccccc
Confidence 999999999999999999999988553 3457889999999999998887776555 777 2222221 122222222
Q ss_pred c-----cCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 486 F-----SMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 486 ~-----~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
. ...-.+++|++||..|.++- ++.+.+|.
T Consensus 277 ~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 277 PSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred cccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 2 23358999999999999886 56688886
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=247.14 Aligned_cols=286 Identities=18% Similarity=0.277 Sum_probs=235.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.++.|+|+|..||+|+.|..|.+|++..... -...+.+|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 358999999999999999999999999999999765543 224466888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|..+.| ..+++.+++++.|++|+.||+++++....
T Consensus 91 --gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--------------------------------------- 127 (338)
T KOG0265|consen 91 --GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK--------------------------------------- 127 (338)
T ss_pred --ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh---------------------------------------
Confidence 99999999 56788999999999999999999874332
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~ 268 (515)
.++|..-|+++.-+..|..|+. + +|+++++||+++....
T Consensus 128 ---------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 128 ---------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred ---------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 2466777788876666766665 5 7999999999966543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ....+.+++++.|..++ ..+.+|+-|+.|++||++.+... .++.||..+|+.+
T Consensus 169 ~---------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~~----------------~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 169 K---------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDGL----------------YTLSGHADTITGL 222 (338)
T ss_pred h---------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcce----------------EEeecccCceeeE
Confidence 2 12246778999999988 89999999999999999887652 2367888999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeC---CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
..+|+|.++.+-+ |.++++||++. ..++++.+.+|...-. .. ...++|+|++..+..|+.|..++
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEE
Confidence 9999999999965 59999999984 1334677776653211 00 23789999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||.... ..+..|.+|...|+.+.|+|..+++.+++.|++|.+
T Consensus 292 vwd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred Eeecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9998865 455899999999999999999999999999999998
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=260.83 Aligned_cols=330 Identities=18% Similarity=0.292 Sum_probs=253.6
Q ss_pred cccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..|..+|.+.+|+|-.. .|++|+.|-..++|++......+.. .+ .++......+ ++.+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~--q~-----------~lrh~~~~~~--------~s~~ 233 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST--QL-----------VLRHCIREGG--------KSVP 233 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch--hh-----------hhhhhhhhhc--------ccCC
Confidence 35999999999999655 8999999999999998752211000 00 0000000111 1122
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
....|++++| +.+|..|++|+.||.+++|+........
T Consensus 234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~~t---------------------------------------- 271 (524)
T KOG0273|consen 234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLIST---------------------------------------- 271 (524)
T ss_pred ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhhhh----------------------------------------
Confidence 2266999999 6678899999999999999976543100
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+..|.++|.++.|+.+|.+|+++ -|+++.+||..++....
T Consensus 272 ---------------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 272 ---------------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ---------------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 36789999999999999999998 79999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.++-|..+...+.|-.+. .|++++.|+.|+++.+..... ...+.+|.++|.++.
T Consensus 313 --------~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P----------------~~t~~GH~g~V~alk 366 (524)
T KOG0273|consen 313 --------QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP----------------VKTFIGHHGEVNALK 366 (524)
T ss_pred --------eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc----------------ceeeecccCceEEEE
Confidence 445577776788998764 899999999999999865443 233677899999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC---------CEEEEecC
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSY 419 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~s~ 419 (515)
|.|.|.+|++++| ++++||.... ......+..|... |..+.|+|+| ..|++++.
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~ 430 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASF 430 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeec
Confidence 9999999999987 9999999885 7778888888755 4478888865 47899999
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
|++|++||+..+ ..+.+|..|..||.+++|+|+|+++|+|+.||.|.++. ..++. ....-.+.|..+.|+.
T Consensus 431 dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~------~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 431 DSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV------KSYQGTGGIFELCWNA 503 (524)
T ss_pred CCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee------EeecCCCeEEEEEEcC
Confidence 999999999988 45589999999999999999999999999999999922 22222 1122356799999999
Q ss_pred CCCEEEEEc-CCcEEE
Q 010206 498 SENSIACAA-SNSLYM 512 (515)
Q Consensus 498 ~~~~la~~~-~~~~~i 512 (515)
+|++|.++. ++.+++
T Consensus 504 ~G~kl~~~~sd~~vcv 519 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCV 519 (524)
T ss_pred CCCEEEEEecCCCceE
Confidence 999988554 444554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=255.45 Aligned_cols=283 Identities=14% Similarity=0.227 Sum_probs=239.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.|+++.|...+|++|+.|++++|||+.+++ +..++.+|.
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi---------- 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI---------- 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh----------
Confidence 45899999999999999999999999999999999887 457888998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|..+++++..+ |+++++.|+.|+.||++..+....
T Consensus 194 --~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvIR~--------------------------------------- 230 (460)
T KOG0285|consen 194 --ETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVIRH--------------------------------------- 230 (460)
T ss_pred --heeeeeeecccCc--eEEEecCCCeeEEEechhhhhHHH---------------------------------------
Confidence 8899999976655 999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
-.+|-..|.|++.+|.-..|++| .|.++++||+++.....
T Consensus 231 ---------------------------------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 231 ---------------------------------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred ---------------------------------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 25888999999999999999998 89999999999877654
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|..+|.++.+.|.+ -.+++|+.|++|++||++.++... .+..|...+++++
T Consensus 272 --------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~----------------tlt~hkksvral~ 326 (460)
T KOG0285|consen 272 --------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMI----------------TLTHHKKSVRALC 326 (460)
T ss_pred --------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeE----------------eeecccceeeEEe
Confidence 678999999999999988 689999999999999999987532 2566778999999
Q ss_pred EccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 350 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 350 ~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
.+|....+++++...|+-|++.. +..+..+.+|... +.+++...|+ ++++|++.|.+.+||.+
T Consensus 327 lhP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~i---------------intl~~nsD~-v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 327 LHPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAI---------------INTLSVNSDG-VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred cCCchhhhhccCCccceeccCCc-cchhhccccccce---------------eeeeeeccCc-eEEEcCCceEEEEEecC
Confidence 99999999998877999999985 8888888888766 3377777554 68889999999999999
Q ss_pred CCCcceeeec--------cCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 430 EGSAESTTLE--------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 430 ~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
++-+- +.++ .....|.+.+|...|..|++|..|++|++++.
T Consensus 390 sg~ny-Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 390 SGHNY-QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cCccc-ccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 87332 2221 22356788899999999999999999999443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=255.75 Aligned_cols=282 Identities=16% Similarity=0.224 Sum_probs=248.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|..+|+.+-|+|+-..+++++.|++|++||..+++. ...+++|.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-----------------------e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-----------------------ERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-----------------------hhhhhccc----------
Confidence 457999999999999999999999999999999998873 47789998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..|+| +..|.++++++.|-.+++||..+..
T Consensus 151 --~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------- 183 (406)
T KOG0295|consen 151 --DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------- 183 (406)
T ss_pred --cceeEEEE--ecCccEEEecCCccchhheeHHHHH-------------------------------------------
Confidence 88999999 5668899999999999999987631
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.+.+. +.+|...|.+++|-|.|.+++++ .|.+|+.|++.++....
T Consensus 184 ---------------------------------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~ 229 (406)
T KOG0295|consen 184 ---------------------------------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK 229 (406)
T ss_pred ---------------------------------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE
Confidence 01111 46888999999999999999998 89999999999887664
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
++.+|.+.|..++.+.|| .++++++.|.++++|-+.+++.. ..+.+|.-+|.+++
T Consensus 230 --------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----------------~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 230 --------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----------------AELREHEHPVECIA 284 (406)
T ss_pred --------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----------------hhhhccccceEEEE
Confidence 778999999999999999 99999999999999999887542 23677778899999
Q ss_pred EccC---------------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 350 FARN---------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 350 ~s~~---------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
|.|. ++++++++. ++|++||+.+ +.++.++.+|...+ ..++|+|.|+|
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwV---------------r~~af~p~Gky 348 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWV---------------RGVAFSPGGKY 348 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEeccccee---------------eeeEEcCCCeE
Confidence 8663 368888885 9999999998 89999999999884 49999999999
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+++.+|+++++||++++.++ .+++.|..-++.+.|+.+..++++|+.|.++++
T Consensus 349 i~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 999999999999999998655 788899999999999999999999999999988
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=270.10 Aligned_cols=282 Identities=15% Similarity=0.210 Sum_probs=243.0
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|++.|.++.|+|...+++++-.+|.|.||+.++...+ .++.-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-----------------------ksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-----------------------KSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceee-----------------------eeeeecc-----------
Confidence 348899999999999999999999999999999887643 4454444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|++..|.+..+ .+++|+.|..|++|+..+++....
T Consensus 56 -~PvRa~kfiaRkn--Wiv~GsDD~~IrVfnynt~ekV~~---------------------------------------- 92 (794)
T KOG0276|consen 56 -VPVRAAKFIARKN--WIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------- 92 (794)
T ss_pred -cchhhheeeeccc--eEEEecCCceEEEEecccceeeEE----------------------------------------
Confidence 7799999987665 999999999999999998764332
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
...|...|++++.+|...+++++ +|-+|++||.+..-.+.
T Consensus 93 --------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~- 133 (794)
T KOG0276|consen 93 --------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE- 133 (794)
T ss_pred --------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee-
Confidence 35788999999999999999998 89999999998554332
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+.+++|...|.+++|+|.+++.|++++-|++|++|.+..... ..++.+|...|+|+.+
T Consensus 134 ------qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----------------nfTl~gHekGVN~Vdy 191 (794)
T KOG0276|consen 134 ------QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----------------NFTLEGHEKGVNCVDY 191 (794)
T ss_pred ------eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----------------ceeeeccccCcceEEe
Confidence 378999999999999999889999999999999999976543 2347788899999999
Q ss_pred cc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 351 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
-+ |..+|++|+| .+|+|||..+ ..+++++.+|...+ ..++|+|.=.+++|||+||+++||+
T Consensus 192 y~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nv---------------s~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 192 YTGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNV---------------SFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ccCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccc---------------eEEEecCCCcEEEEecCCccEEEec
Confidence 87 4579999876 9999999997 99999999998764 4899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
-.+. .+..++......+++++..+....++.|...|.+.+
T Consensus 256 s~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 256 SKTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred Ccce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 8876 455788888889999999998888999999888877
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=234.75 Aligned_cols=271 Identities=17% Similarity=0.293 Sum_probs=219.4
Q ss_pred ccccc-cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEV-DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~-~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.++|. ..|+.+.+.||++.||+|+.- .|++||+.+.... .+.++.+|.
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------------------Pv~t~e~h~--------- 83 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------------------PVATFEGHT--------- 83 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------------------ceeEEeccC---------
Confidence 45565 479999999999999999865 6999999887643 557788998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|+++.| ..+|+.+++|+.||+++|||++...+.+
T Consensus 84 ---kNVtaVgF--~~dgrWMyTgseDgt~kIWdlR~~~~qR--------------------------------------- 119 (311)
T KOG0315|consen 84 ---KNVTAVGF--QCDGRWMYTGSEDGTVKIWDLRSLSCQR--------------------------------------- 119 (311)
T ss_pred ---CceEEEEE--eecCeEEEecCCCceEEEEeccCcccch---------------------------------------
Confidence 77999999 7789999999999999999998743211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...|..+|+++..+|+...|++| .+|.|++||+......
T Consensus 120 ----------------------------------------~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 120 ----------------------------------------NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred ----------------------------------------hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 12455889999999999999999 7999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.++ +......|.++...||| .+++.+...|...+|++-+..... .+. +...++.|.+.+..+
T Consensus 160 ~~l-------iPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s----~l~------P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 160 HEL-------IPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTAS----ELE------PVHKFQAHNGHILRC 221 (311)
T ss_pred ccc-------CCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccc----cce------EhhheecccceEEEE
Confidence 332 23345789999999999 899999999999999997743221 111 122378889999999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.+|||+++|++++ |.+++||+.+..-+....+.+|... ++.++||.||+||+||+.|+.+++|+
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW---------------vWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW---------------VWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce---------------EEeeeeccCccEEEecCCCCceeecc
Confidence 9999999999976 5999999998633566677777766 67999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
+..++ .+....+|..+..+++.
T Consensus 287 ~~~~k-~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 287 LSAGK-EVRQYQGHHKAAVCVAL 308 (311)
T ss_pred cccCc-eeeecCCcccccEEEEe
Confidence 99884 44677888776666654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=266.13 Aligned_cols=249 Identities=17% Similarity=0.224 Sum_probs=195.6
Q ss_pred eccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 230 AHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..+|...|++++++.+...+++|..+.+++|+..+.+.... +. .+.+.+..|-|.+ +++++|...|.+.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRT--------i~--~~y~l~~~Fvpgd-~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRT--------IT--CGYILASKFVPGD-RYIVLGTKNGELQ 437 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEE--------ec--cccEEEEEecCCC-ceEEEeccCCceE
Confidence 47899999999999999999999999999999998776543 22 4478999999998 9999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC----CCCCeeeEeeec
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM----DSGPVATFQVHE 384 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~----~~~~~~~~~~~~ 384 (515)
+||+....++.. ...|.+.|.+++.+||++.+++|+. .+|++||+.. ++...+.+..+.
T Consensus 438 vfdlaS~~l~Et----------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 438 VFDLASASLVET----------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred EEEeehhhhhhh----------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 999998876543 5678899999999999999999875 9999999863 111112222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
...-. --.+|.++.+||||++|+.+=-|++++||-+.+- ....+|.+|.-||.++.++||++.+++||.|+
T Consensus 502 ~rtLe--------l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 502 TRTLE--------LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred ceEEe--------ccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 11110 0113669999999999999999999999999986 45579999999999999999999999999999
Q ss_pred eEEE---------------------------------------ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 465 VVRR---------------------------------------VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 465 ~v~l---------------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
.|++ ++-|.-.+.+.....-+|...|.+++.+|+|.+++++
T Consensus 573 nVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 573 NVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred ceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 9998 1111111111222344688899999999999999987
Q ss_pred cC-CcEEEEe
Q 010206 506 AS-NSLYMYY 514 (515)
Q Consensus 506 ~~-~~~~i~~ 514 (515)
+. ..+.+|.
T Consensus 653 shD~sIRlwE 662 (888)
T KOG0306|consen 653 SHDKSIRLWE 662 (888)
T ss_pred cCCceeEeee
Confidence 74 6688884
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=275.53 Aligned_cols=264 Identities=19% Similarity=0.302 Sum_probs=212.7
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCc----cccCccc--cc--ccccCCccceeeeecccCCCccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG----QRRDLEM--MD--YSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~----~~~~~~~--~~--~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
...++|..|++|+.+||.|-.|..|++|.+...+.... .+..++. .+ ....-..+.-...++.+|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~------ 451 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS------ 451 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC------
Confidence 35799999999999999999999999999986432110 0011100 00 0000011111223477787
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
++|....|+ |+.++|++++.|+++|+|.+.+....-
T Consensus 452 ------GPVyg~sFs--Pd~rfLlScSED~svRLWsl~t~s~~V------------------------------------ 487 (707)
T KOG0263|consen 452 ------GPVYGCSFS--PDRRFLLSCSEDSSVRLWSLDTWSCLV------------------------------------ 487 (707)
T ss_pred ------Cceeeeeec--ccccceeeccCCcceeeeecccceeEE------------------------------------
Confidence 999999995 456799999999999999998754211
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
. -.+|..+|+++.|+|.|-+|+++ .|++.++|.....
T Consensus 488 -----------------------------------------~-y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 488 -----------------------------------------I-YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred -----------------------------------------E-ecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 1 25888999999999999999998 8999999998865
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
... +.+.+|...|.|+.|+|+. .++++|+.|.++|+||+.+|..+ +.|.||.++|
T Consensus 526 ~Pl--------RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~V----------------RiF~GH~~~V 580 (707)
T KOG0263|consen 526 KPL--------RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSV----------------RIFTGHKGPV 580 (707)
T ss_pred Cch--------hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEE----------------EEecCCCCce
Confidence 443 3678899999999999998 99999999999999999998753 3478899999
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|||+|++|++|++ +.|.+||+.+ +.++..+.+|.+. |.++.||.||..||+|+.|++|+
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEE
Confidence 99999999999999986 9999999996 8999999999665 55999999999999999999999
Q ss_pred EEecCCC
Q 010206 425 VFGCSEG 431 (515)
Q Consensus 425 iw~~~~~ 431 (515)
+||+...
T Consensus 645 lWD~~~~ 651 (707)
T KOG0263|consen 645 LWDLTKV 651 (707)
T ss_pred EEEchhh
Confidence 9999754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=243.59 Aligned_cols=332 Identities=12% Similarity=0.065 Sum_probs=260.8
Q ss_pred ccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 29 ~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.....|+++|.+++.+|+.+++|||+.|..-.||++.+++. ..++.+|.
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------------~~eltgHK-------- 106 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------------AGELTGHK-------- 106 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------------eeEecCCC--------
Confidence 34568999999999999999999999999999999998873 46788998
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|+++.| +.++.+|++|..+|.|++|+..++.......... +.+. -+.|.|.+..+
T Consensus 107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--------~die-------Wl~WHp~a~il-- 163 (399)
T KOG0296|consen 107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--------EDIE-------WLKWHPRAHIL-- 163 (399)
T ss_pred ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeeccc--------CceE-------EEEecccccEE--
Confidence 99999999 6788999999999999999999988766554221 1222 57888988888
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+.|+.||.+-+|. +.+. .....+.+|..++++=.|.|+|+.++++ .||+|++|++.+..+
T Consensus 164 ----------lAG~~DGsvWmw~--ip~~-------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 164 ----------LAGSTDGSVWMWQ--IPSQ-------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred ----------EeecCCCcEEEEE--CCCc-------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 9999999999999 3321 1122257999999999999999999999 899999999999877
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
...+- ........++.++..+ ..++.|+.++.+++-+..+++.+.- ..+ .. ......+...+.+
T Consensus 225 ~~~~~-------~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~----~n~-~~---~~l~~~~e~~~es 288 (399)
T KOG0296|consen 225 LHKIT-------QAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNC----NNG-TV---PELKPSQEELDES 288 (399)
T ss_pred eEEec-------ccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEEe----cCC-CC---ccccccchhhhhh
Confidence 65432 1113456788888887 8999999999999988888775321 110 11 1112233344555
Q ss_pred EEEcc---CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 348 IKFAR---NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 348 ~~~s~---~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
+.+.| .-.+.|.|+ ||+|.|||+.. .++...+ .|... |+.+.|-+ ..+|++++.+|.|
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~---------------V~~l~w~~-t~~l~t~c~~g~v 350 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDG---------------VTKLKWLN-TDYLLTACANGKV 350 (399)
T ss_pred hhhcccccccchhhcccccceEEEEeccc-chhheec-cCCCc---------------eEEEEEcC-cchheeeccCceE
Confidence 55544 555666777 49999999985 4433333 34433 56899998 7899999999999
Q ss_pred EEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.||.++| .++.++.+|..+|..++++|+++.++++|.|++.++
T Consensus 351 ~~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 351 RQWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred Eeeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 99999998 666899999999999999999999999999999888
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=269.72 Aligned_cols=265 Identities=16% Similarity=0.239 Sum_probs=216.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..++|..| ++++.+||.|..|..|++|.+...+++.......-...
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-------------------------------- 424 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-------------------------------- 424 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc--------------------------------
Confidence 67999999 66778999999999999999987665444332211000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
=..+.|-.+.+-| ... ......+.+|.++|....|+|+.++|+++ .|+++|+|.+.+.....
T Consensus 425 ------d~~sad~~~~~~D-----~~~----~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V-- 487 (707)
T KOG0263|consen 425 ------DTESADVDVDMLD-----DDS----SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV-- 487 (707)
T ss_pred ------cccccchhhhhcc-----ccC----CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--
Confidence 0111111122211 111 11111257999999999999999999999 89999999999876553
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|..+|..+.|+|.| .+||+++.|++.++|....... .+++.+|.+.|.|+.|+
T Consensus 488 ------~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----------------lRifaghlsDV~cv~FH 544 (707)
T KOG0263|consen 488 ------IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----------------LRIFAGHLSDVDCVSFH 544 (707)
T ss_pred ------EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----------------hhhhcccccccceEEEC
Confidence 567999999999999999 9999999999999999876432 34578888999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|+..|+++|+. .++++||+.+ +..++.|.+|... |++++|||+|++|++|+.||.|.+||+.+
T Consensus 545 PNs~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 545 PNSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred CcccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 99999999875 9999999997 8999999999876 66999999999999999999999999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ .++..+.+|.+.+.++.|+.+|..|++|+.|.+|++
T Consensus 609 ~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 609 G-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred C-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 7 566899999999999999999999999999999999
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=254.18 Aligned_cols=240 Identities=19% Similarity=0.239 Sum_probs=199.5
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+..|+..|+++.|++++.++++| .+|.|++|+........ ....|...|++++|+|++ ..|++++.||+|
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~--------~~ahh~eaIRdlafSpnD-skF~t~SdDg~i 204 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI--------IQAHHAEAIRDLAFSPND-SKFLTCSDDGTI 204 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH--------hhHhhhhhhheeccCCCC-ceeEEecCCCeE
Confidence 47899999999999999999999 79999999987443221 223355999999999998 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
+|||....+. ..++.+|.-.|.+++|+|...++++|++ ..|++||.++ +.++.++.+|...
T Consensus 205 kiWdf~~~ke----------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt- 266 (464)
T KOG0284|consen 205 KIWDFRMPKE----------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT- 266 (464)
T ss_pred EEEeccCCch----------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccce-
Confidence 9999987653 1236778889999999999999999876 9999999997 9999999999876
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
|+.+.|+|++++|+|+|.|..++++|+++- +.+.++++|...++++.|+|-. ..+.+|+.||.|
T Consensus 267 --------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 267 --------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred --------------EEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 679999999999999999999999999965 4558999999999999999965 467899999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
....-.. ..++......|...|.+++|+|=|..|++|+.+. +.+|
T Consensus 332 vh~~v~~--~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 332 VHWVVGL--EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred EEEeccc--cccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 9822110 1112222346889999999999999999998655 5555
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=270.32 Aligned_cols=286 Identities=23% Similarity=0.425 Sum_probs=236.8
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|...|+|+.|+++|++|++++.++.+++|+..+.+. .....+.+|.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------ 203 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------ 203 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------
Confidence 4578999999999999999999999999999855441 1334457777
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|+.++| ++++.++++++.|++|++||+... ....
T Consensus 204 ~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~----------------------------------------- 240 (456)
T KOG0266|consen 204 RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLK----------------------------------------- 240 (456)
T ss_pred cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEE-----------------------------------------
Confidence 88999999 556779999999999999999332 2211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
. +.+|...|++++|+|+++++++| .|++|++||+++++...
T Consensus 241 ------------------------------------~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~- 282 (456)
T KOG0266|consen 241 ------------------------------------T-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR- 282 (456)
T ss_pred ------------------------------------E-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-
Confidence 1 46899999999999999999999 89999999999855442
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--ceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 348 (515)
.+.+|.+.|.+++|++++ ++|++++.|+.|++||+.++... ..+.+ .++.. +++++
T Consensus 283 -------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~------------~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 283 -------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLL------------SGAENSAPVTSV 340 (456)
T ss_pred -------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecc------------cCCCCCCceeEE
Confidence 678899999999999999 99999999999999999998732 01111 22222 59999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|+|++++++++.. +.+++||+.. ......+.+|.... ..+++...++.+.++++|+.|+.|++|+
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEe
Confidence 99999999999876 8999999996 88888888887541 1133566688999999999999999999
Q ss_pred cCCCCcceeeeccC-CCceeeEEECCCCCeeEeec--CCCeEEE
Q 010206 428 CSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~d~~v~l 468 (515)
+.++ ..++.+++| ...+..+.++|...++++++ .|+.+++
T Consensus 408 ~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 408 SSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred CCcc-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 9986 566899999 89999999999999999998 6888887
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=253.81 Aligned_cols=289 Identities=16% Similarity=0.237 Sum_probs=236.8
Q ss_pred ccccccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 27 TAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 27 ~~~~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
......+|+..|+++.|.| .+.+|++++.|+.|+||++-+. .+++.+|.+|.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~----------------------~~~lrtf~gH~----- 258 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD----------------------RRCLRTFKGHR----- 258 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC----------------------cceehhhhcch-----
Confidence 3345679999999999999 8999999999999999998753 23778999999
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
.+|.+++| +.++..|++++.|+.|++||+++|++...+...
T Consensus 259 -------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------------------------------ 299 (503)
T KOG0282|consen 259 -------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------------------------------ 299 (503)
T ss_pred -------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecC------------------------------
Confidence 89999999 667889999999999999999999865543322
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~ 263 (515)
..+.|+.|+|++ +.|++| .|+.|+.||++
T Consensus 300 -------------------------------------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 300 -------------------------------------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred -------------------------------------------------CCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 346789999988 777788 89999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
+++... .+..|-+.|..+.|-+++ ..+++.+.|+.+++|+.+........ ...+.-
T Consensus 331 s~kvvq--------eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i---------------~~~~~h 386 (503)
T KOG0282|consen 331 SGKVVQ--------EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNI---------------ADPEMH 386 (503)
T ss_pred chHHHH--------HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhh---------------cchhhc
Confidence 887442 556789999999999999 99999999999999999876543210 111113
Q ss_pred ceeEEEEccCCCEEEEEc-CCeEEEEEeeCC--CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 344 SISDIKFARNGRHILSRD-YMTLKLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
...++..+|++.++++-+ ++.|.++.+... ....+.+.+|..... -..+.|||||.+|++|+.|
T Consensus 387 smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy-------------s~~v~fSpDG~~l~SGdsd 453 (503)
T KOG0282|consen 387 TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY-------------SCQVDFSPDGRTLCSGDSD 453 (503)
T ss_pred cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc-------------eeeEEEcCCCCeEEeecCC
Confidence 477899999999999865 489999987532 223456777764422 1279999999999999999
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
|.+.+||.++. .+...+++|..++..+.|+|-.+ .+|++++||.|++
T Consensus 454 G~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 454 GKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred ccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 99999999987 66789999999999999999764 6899999999997
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=222.76 Aligned_cols=294 Identities=15% Similarity=0.265 Sum_probs=227.5
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
.+..+++|. +++..++|+|.. |..|++++.|+.|++|+...+.- .
T Consensus 6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s-~--------------------- 50 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDS-W--------------------- 50 (312)
T ss_pred eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCc-E---------------------
Confidence 345577887 889999997643 56899999999999999875321 0
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.++...-.+|...|++++|+|.|++|++
T Consensus 51 ----------------------------------------------------~ck~vld~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 51 ----------------------------------------------------TCKTVLDDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred ----------------------------------------------------EEEEeccccchheeeeeeecCCCcEEEE
Confidence 0111112579999999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ -|.++.||.-....... + ..+++|...|.|++|+++| ++||+++.|..+-+|.+..+.. |+.
T Consensus 79 aSFD~t~~Iw~k~~~efec--v----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE-------fec-- 142 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFEC--V----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE-------FEC-- 142 (312)
T ss_pred eeccceEEEeecCCCceeE--E----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-------EEE--
Confidence 9 79999999866443222 1 3789999999999999999 9999999999999999875432 111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..++.+|+..|..+.|+|...+|+++++ ++|++|+-.. .-.+.+++.+|... |++++|
T Consensus 143 ----~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F 203 (312)
T KOG0645|consen 143 ----IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAF 203 (312)
T ss_pred ----EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEe
Confidence 2347788899999999999999999986 9999998763 23467888888765 779999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-CCCCCcccc--CC-cc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDA--NG-NA 483 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~--~~-~~ 483 (515)
++.|..|+++++|++++||...+. .-..|..++..+.+. ...|++++.|+.+++++ ...+..... .. ..
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~ 276 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKE 276 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhh
Confidence 999999999999999999997643 223567788888887 56899999999999932 222221111 11 22
Q ss_pred ccccCCeeEEEEcCC-CCEEEEEcCCc-EEEEe
Q 010206 484 FDFSMKLLHLAWHPS-ENSIACAASNS-LYMYY 514 (515)
Q Consensus 484 ~~~~~~i~~~~~s~~-~~~la~~~~~~-~~i~~ 514 (515)
..|...|++++|+|. .++|+++++|| +.+|.
T Consensus 277 ~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 277 GAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred cccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 357889999999996 78888888887 55554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=242.58 Aligned_cols=284 Identities=18% Similarity=0.323 Sum_probs=231.3
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|++.|.-+.||++|+|||+++.|.+..+|++.... .++.+.++.+|.
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~----------- 269 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS----------- 269 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc-----------
Confidence 3699999999999999999999999999999986543 345778889998
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|..|.| +||+++|++++.|..+.+||+.++......
T Consensus 270 -~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y--------------------------------------- 307 (519)
T KOG0293|consen 270 -QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLY--------------------------------------- 307 (519)
T ss_pred -CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhc---------------------------------------
Confidence 89999999 556789999999999999999998643321
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..++...+.+.+|.|||..|++| .|+++..||++... ..
T Consensus 308 --------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~- 347 (519)
T KOG0293|consen 308 --------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LG- 347 (519)
T ss_pred --------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hh-
Confidence 12345678899999999999999 79999999997432 21
Q ss_pred eecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..++- ...|.+++..+|| ..+++.+.|..|++|+..+..... .. .-..+|+++.
T Consensus 348 -------~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~----li-------------se~~~its~~ 402 (519)
T KOG0293|consen 348 -------NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDRG----LI-------------SEEQPITSFS 402 (519)
T ss_pred -------cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhhc----cc-------------cccCceeEEE
Confidence 22222 3568999999999 888888899999999987754321 11 1125799999
Q ss_pred EccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~ 427 (515)
.|.+++++++. .+..+++||+. +.+.+..+.+|..... +..-||.. +..++++||+|+.|+||+
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEE
Confidence 99999998885 45899999999 4888889988875422 23456654 457999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
..++ .++.+|.+|...|+++++.|..+ .+||+|.||+||+
T Consensus 469 r~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 469 RISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred ccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 9988 67799999999999999999776 5899999999999
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=235.82 Aligned_cols=295 Identities=14% Similarity=0.259 Sum_probs=244.8
Q ss_pred cccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCC
Q 010206 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (515)
Q Consensus 83 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 162 (515)
...|+..+++...+.+|. +.|.++++ .+.+++|++|+.|++++|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vav--dP~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAV--DPGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEee--CCCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 345788888999999998 99999999 45567999999999999999999875443
Q ss_pred CCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe
Q 010206 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN 242 (515)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (515)
+.+|...|..+++
T Consensus 189 -------------------------------------------------------------------ltGhi~~vr~vav 201 (460)
T KOG0285|consen 189 -------------------------------------------------------------------LTGHIETVRGVAV 201 (460)
T ss_pred -------------------------------------------------------------------ecchhheeeeeee
Confidence 3578889999999
Q ss_pred cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 243 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 243 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
++...+|+++ .|+.|+.||++..+.. +.+.+|-..|+|++.+|.- ..|++|+.|..+|+||+|+...+
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvI--------R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V-- 270 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVI--------RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV-- 270 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhH--------HHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE--
Confidence 9999999998 8999999999976544 2678999999999999998 89999999999999999987542
Q ss_pred ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 322 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.++.||..+|..+.+.|-...+++|+ |++|++||++. ++...++..|...
T Consensus 271 --------------~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkks-------------- 321 (460)
T KOG0285|consen 271 --------------HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKS-------------- 321 (460)
T ss_pred --------------EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeecccce--------------
Confidence 23788999999999999777888887 59999999996 8888888888765
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---ecCCCCCcc
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSAL 477 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~~~~~~~~~ 477 (515)
|.+++.+|....+|+++.| .|+-|++..+. ..+.+.+|...++.+....|+ ++++|+..|.+.+ .++.+....
T Consensus 322 -vral~lhP~e~~fASas~d-nik~w~~p~g~-f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 322 -VRALCLHPKENLFASASPD-NIKQWKLPEGE-FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred -eeEEecCCchhhhhccCCc-cceeccCCccc-hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 4589999999999999987 58999999884 446699999999999987765 7889999999988 334443322
Q ss_pred c--cCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEE
Q 010206 478 D--ANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 513 (515)
Q Consensus 478 ~--~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~ 513 (515)
+ .....+..+..|++.+|...|..|+++. +..|.+|
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 1 1222345577899999999999999776 5557776
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=252.57 Aligned_cols=386 Identities=14% Similarity=0.180 Sum_probs=286.3
Q ss_pred cccccchhhhhccccc-ccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTA-GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~-~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
+...|++.. |+... .........|+|++-+|+.-+||+|..||.|+||+..++.
T Consensus 44 ~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~----------------------- 98 (888)
T KOG0306|consen 44 QVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE----------------------- 98 (888)
T ss_pred cEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-----------------------
Confidence 456698875 32111 1122344689999999999999999999999999988664
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|+.+.| +..|.+|++|+.|+.|.+||+-...-......+. ..+.
T Consensus 99 ~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--------d~iT--- 153 (888)
T KOG0306|consen 99 ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--------DSIT--- 153 (888)
T ss_pred eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecch--------HHHh---
Confidence 336789998 89999999 7788899999999999999998766444444331 2222
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+.|..+.+.+ ++.+.|+.|++|| +.. ..|..+ .-.|...+..+++.+ +.+++
T Consensus 154 ----~~~F~~~~~~l------------vS~sKDs~iK~Wd--L~t------qhCf~T-hvd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 154 ----QALFLNGDSFL------------VSVSKDSMIKFWD--LET------QHCFET-HVDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred ----HHhccCCCeEE------------EEeccCceEEEEe--ccc------ceeeeE-EecccceEEEEEEec--ceEEE
Confidence 44455555555 9999999999999 332 233333 357899999999987 56666
Q ss_pred e-CCCcEEEEeCCCC-----------------------------------------------------------------
Q 010206 252 A-DDLRINLWNLEIS----------------------------------------------------------------- 265 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~----------------------------------------------------------------- 265 (515)
+ .|+.+++|++...
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 6 8999999998211
Q ss_pred ----------------------------------------------Ccccce----------ec----ccC---------
Q 010206 266 ----------------------------------------------NQSFNI----------VD----VKP--------- 276 (515)
Q Consensus 266 ----------------------------------------------~~~~~~----------~~----~~~--------- 276 (515)
.....+ .. .++
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 000000 00 011
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
..+.+|...|++++++.+. ..++ .+..+.+++|+..+.+++ +++.. +.+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~-Sga~~SikiWn~~t~kci----RTi~~--------------~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLA-SGAGESIKIWNRDTLKCI----RTITC--------------GYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCc-eeee-ecCCCcEEEEEccCccee----EEecc--------------ccEEEEEecCCCce
Confidence 2346788999999999886 4444 455678999999988764 33332 46888999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS--- 432 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~--- 432 (515)
++.|.. |.+.+||+.. ...+.+...|.+. +++++.+||++.+++||.|.+|++||..--.
T Consensus 427 Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 999988 9999999996 8888888889876 6799999999999999999999999975211
Q ss_pred -cceeeec-------cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 433 -AESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 433 -~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
.....+. .-.+.+-++.+|||+++|+.+=-|.+|+++--. ...+...+.+|.-+|.+|..|||++.+++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD---tlKFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD---TLKFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec---ceeeeeeecccccceeEEeccCCcCeEEe
Confidence 1111111 224678899999999999999999999981111 11244456789999999999999999998
Q ss_pred Ec-CCcEEEEe
Q 010206 505 AA-SNSLYMYY 514 (515)
Q Consensus 505 ~~-~~~~~i~~ 514 (515)
++ +.++.+|-
T Consensus 568 gSADKnVKiWG 578 (888)
T KOG0306|consen 568 GSADKNVKIWG 578 (888)
T ss_pred ccCCCceEEec
Confidence 87 55699984
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=220.34 Aligned_cols=287 Identities=16% Similarity=0.316 Sum_probs=222.1
Q ss_pred ccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec-ccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (515)
..+|.+.|..++|+|- |..||+++.|..|+||+...+. .+.+...+ .+|.
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk-------- 61 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK-------- 61 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch--------
Confidence 3479999999999998 8999999999999999987422 12233333 3566
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|++++|+ |.|++|++++.|.++.||.-..++...+.
T Consensus 62 ----rsVRsvAws--p~g~~La~aSFD~t~~Iw~k~~~efecv~------------------------------------ 99 (312)
T KOG0645|consen 62 ----RSVRSVAWS--PHGRYLASASFDATVVIWKKEDGEFECVA------------------------------------ 99 (312)
T ss_pred ----heeeeeeec--CCCcEEEEeeccceEEEeecCCCceeEEe------------------------------------
Confidence 889999995 55779999999999999987655432221
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|...|.|++|+++|.+||++ .|..|-+|.+.....
T Consensus 100 ---------------------------------------~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 100 ---------------------------------------T-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred ---------------------------------------e-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 1 57999999999999999999999 899999999984443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
+... ..++.|...|..+.|+|.. .+|++++.|.+|++|+-..+.- ++ ....+.+|...|.+
T Consensus 140 -fec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-------W~------c~~tl~g~~~TVW~ 200 (312)
T KOG0645|consen 140 -FECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-------WE------CVQTLDGHENTVWS 200 (312)
T ss_pred -EEEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-------ee------EEEEecCccceEEE
Confidence 2222 2678899999999999997 8999999999999998763210 11 12236778889999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|++.|..|+++++ ++++||.....-. ..|... ++.++|. ...|++++.|+.|++|
T Consensus 201 ~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~-----~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 201 LAFDNIGSRLVSCSDDGTVSIWRLYTDLS-----GMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLF 258 (312)
T ss_pred EEecCCCceEEEecCCcceEeeeeccCcc-----hhcccc---------------eEeeeec--ccceEeccCCCEEEEE
Confidence 999999999999987 9999998653100 011111 3378887 5579999999999999
Q ss_pred ecCCCC--cc----eeeeccCCCceeeEEECCC-CCeeEeecCCCeEEE
Q 010206 427 GCSEGS--AE----STTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~--~~----~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~l 468 (515)
.-...- .. ...-..|...|+++++.|. ...|++|+.||.+++
T Consensus 259 ~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 259 KESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred EecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 876421 11 1233588899999999995 678999999999998
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=237.74 Aligned_cols=277 Identities=16% Similarity=0.228 Sum_probs=229.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+|+.+-|+|.. ...++++.|.+|++||..++++...
T Consensus 109 ~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~----------------------------------------- 145 (406)
T KOG0295|consen 109 SSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERS----------------------------------------- 145 (406)
T ss_pred cceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhh-----------------------------------------
Confidence 889999997654 4788888999999999998864111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...+.+++|+..|++|+++ .|-.+.+||..+.....+
T Consensus 146 -------------------------------------LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k- 187 (406)
T KOG0295|consen 146 -------------------------------------LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK- 187 (406)
T ss_pred -------------------------------------hhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH-
Confidence 46888999999999999999998 788899999986433332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++..+. ++.+|...|..++.+
T Consensus 188 ------s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~----------------t~~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 188 ------SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK----------------TFPGHSEWVRMVRVN 244 (406)
T ss_pred ------HhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEE----------------eccCchHhEEEEEec
Confidence 667899999999999999 999999999999999999987632 267788899999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC---------------CCEEE
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVA 415 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~ 415 (515)
.||..+++++. .+|++|-+.+ +++...+..|+..+. +++|-|. ++++.
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred CCeeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEE
Confidence 99999999875 9999999997 888888888887754 4444332 46999
Q ss_pred EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 416 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 416 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
+++.|++|++||+.++. .+.+|.+|.+.|+.++|+|.|+||+|+..|+++++++-.... -......|...+++++|
T Consensus 309 s~SrDktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~---cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDF 384 (406)
T ss_pred eecccceEEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce---eeeccCCCcceeEEEec
Confidence 99999999999999984 448999999999999999999999999999999993322222 11122257889999999
Q ss_pred cCCCCEEEEEcCCc-EEEE
Q 010206 496 HPSENSIACAASNS-LYMY 513 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~ 513 (515)
+.+..++++|+-+. ..+|
T Consensus 385 h~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CCCCceEEeccccceeeee
Confidence 99999999998554 6666
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=246.89 Aligned_cols=280 Identities=23% Similarity=0.393 Sum_probs=228.5
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.++|++++|+|++++|++++.||.|++|++.+++. ...+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-----------------------LRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-----------------------EEEEecCC-----------
Confidence 47999999999999999999999999999999876542 23455666
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+..+.|+| +++.+++++.|+.|++|++.+++....
T Consensus 52 -~~i~~~~~~~--~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------- 88 (289)
T cd00200 52 -GPVRDVAASA--DGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------- 88 (289)
T ss_pred -cceeEEEECC--CCCEEEEEcCCCeEEEEEcCcccceEE----------------------------------------
Confidence 6788999954 456999999999999999986531111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+..|...+.++.|++++++++++ .++.|.+||+++.+...
T Consensus 89 --------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 129 (289)
T cd00200 89 --------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT- 129 (289)
T ss_pred --------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-
Confidence 23556789999999998888888 59999999998655432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...+.+++|+|++ .++++++.++.|++||+++++... . +..|...+.++.|
T Consensus 130 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~----~------------~~~~~~~i~~~~~ 185 (289)
T cd00200 130 -------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVA----T------------LTGHTGEVNSVAF 185 (289)
T ss_pred -------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccce----e------------EecCccccceEEE
Confidence 345688899999999997 788888889999999998765422 1 3345578999999
Q ss_pred ccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+++.+++++ ++.|++||+.. .+.+..+..+... +.+++|+|++.++++++.||.|++|++.
T Consensus 186 ~~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 186 SPDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CCCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 99998888876 59999999986 6666666555433 4589999999999999889999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++ .....+..|...+..+.++|+++++++++.|+.+++
T Consensus 250 ~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 250 TG-ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred Cc-eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 76 455677899999999999999999999999999987
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=216.68 Aligned_cols=276 Identities=17% Similarity=0.297 Sum_probs=229.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|+++|.++.|+-||+|.++++.|.+|++|+...+. ++.++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 4688999999999999999999999999999987665 557888887
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|..++. +.|+..|++++.|+.+.+||+.+++....
T Consensus 60 -~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 66999888 56677999999999999999999874332
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+.+|...|+.+.|+.+...+++| -|.++++||-++......
T Consensus 97 --------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 97 --------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred --------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc
Confidence 35888999999999999999999 799999999986543211
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+.+....+.|.++.... ..|++|+.||++|.||+|.|.+...+ ...+|+++.|
T Consensus 139 ------Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy------------------~g~pit~vs~ 191 (307)
T KOG0316|consen 139 ------QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY------------------FGHPITSVSF 191 (307)
T ss_pred ------chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh------------------cCCcceeEEe
Confidence 24455678899998874 57999999999999999999764221 1258999999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+++++..++++- +++++.|-.+ ++.++.+++|.....+ ..++++.....+++|++||.|++||+.
T Consensus 192 s~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~eyk-------------ldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEYK-------------LDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred cCCCCEEEEeeccceeeecccch-hHHHHHhcccccceee-------------eeeeecccceeEEeccCCceEEEEEec
Confidence 999999888774 9999999997 9999999999876442 367888888899999999999999999
Q ss_pred CCCcceeeeccCCCc-eeeEEECCCCCeeEeecCCC
Q 010206 430 EGSAESTTLEASKNP-MRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~ 464 (515)
.. .++..+..+..+ +..+.++|...-++++...+
T Consensus 258 d~-~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 258 DE-TQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred cc-eeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 77 566788888887 89999999887766665443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=255.49 Aligned_cols=295 Identities=16% Similarity=0.214 Sum_probs=242.8
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
.+..|..++|+|...+++++-..|.|.+||..-+. ++..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 45789999999999999999999999999998766 346688888 9
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
+|+.++|+|..+ .|++|+.|..|++|+..+.++...
T Consensus 53 pVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeeecCCCC--eEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 999999987655 999999999999999987653221
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+|-..|+.+.|++.-.+++++ +|.+|+||+..+.+...
T Consensus 89 ------------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia--- 129 (1202)
T KOG0292|consen 89 ------------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA--- 129 (1202)
T ss_pred ------------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE---
Confidence 46899999999999999999998 89999999999777553
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce-------------eeeccCCCcccccc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL-------------FEEQEAPGTRSFFT 339 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 339 (515)
.+.+|...|.|..|+|.. .++++++-|.+||+||+...+........ +-+..+.--+.++.
T Consensus 130 -----vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 130 -----VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred -----EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 678999999999999987 89999999999999998654322111111 11111222356789
Q ss_pred ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 340 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
||...|+-++|+|.-.++++|+| ..|++|.+... .-.+.+..+|.+. |.++-|+|..++|++.
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn---------------Vssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN---------------VSSVLFHPHQDLILSN 268 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC---------------cceEEecCccceeEec
Confidence 99999999999999999999876 99999999741 1245677777765 4599999999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|++|++||+... .-++++....+..+.++.+|....++.|-..|.+-+
T Consensus 269 sEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred CCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 99999999999876 444788888889999999999999998877776654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=233.03 Aligned_cols=293 Identities=16% Similarity=0.251 Sum_probs=238.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
++...-+.|..|||||+||++|+.||.|.||++.+++... .+ .|+....|.-++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK----DL-----------kYQAqd~fMMmd----------- 263 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK----DL-----------KYQAQDNFMMMD----------- 263 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhh----hh-----------hhhhhcceeecc-----------
Confidence 4556778999999999999999999999999999887531 11 122222344444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.|+.| +.|...+++|+.||.|++|.+++|.+..
T Consensus 264 -~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~ClR----------------------------------------- 299 (508)
T KOG0275|consen 264 -DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQCLR----------------------------------------- 299 (508)
T ss_pred -cceEEEee--cccHHHhhccCcCCcEEEEEEecchHHH-----------------------------------------
Confidence 88999999 6677899999999999999999875322
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.|-..|...|+|+.|+.|+..++++ -|.++++.-+++++...
T Consensus 300 ------------------------------------rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK- 342 (508)
T KOG0275|consen 300 ------------------------------------RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK- 342 (508)
T ss_pred ------------------------------------HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH-
Confidence 2235789999999999999999998 79999999999887664
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+++|...|+...|.++| +.+++++.||+|++|+..+.++.. +|.... ...+|.++..
T Consensus 343 -------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~----Tfk~~~----------~d~~vnsv~~ 400 (508)
T KOG0275|consen 343 -------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLS----TFKPLG----------TDYPVNSVIL 400 (508)
T ss_pred -------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhhhh----hccCCC----------CcccceeEEE
Confidence 678999999999999999 999999999999999999887643 232211 2256888888
Q ss_pred cc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 351 AR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 351 s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
-| +...++.+.. ++|.|.++. ++.++.+........ +..+++.||.|.++...++|+.++.|..
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 77 4567777876 899999987 788888765433221 1237899999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+| .+..++..|...+-.++.+|-...+|+-++||.+++
T Consensus 467 ~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 467 LSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 988 566899999999999999999999999999999887
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=224.43 Aligned_cols=280 Identities=14% Similarity=0.208 Sum_probs=235.5
Q ss_pred ccccccceEEEEECC---CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~---~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
-.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++.. +.+|.+|.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------------igtfeghk------- 59 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------------IGTFEGHK------- 59 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------------EEeeeccC-------
Confidence 358999999999997 899999999999888877776664 47899998
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
+.|.+... +.+...-++++.|-+-++||.-++....
T Consensus 60 -----gavw~~~l--~~na~~aasaaadftakvw~a~tgdelh------------------------------------- 95 (334)
T KOG0278|consen 60 -----GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELH------------------------------------- 95 (334)
T ss_pred -----cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhh-------------------------------------
Confidence 88998888 5555577788899999999977664211
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
...|..-|.+++|+.|.+.|++| .+..+++||++..+
T Consensus 96 ------------------------------------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 96 ------------------------------------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred ------------------------------------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 13577789999999999999998 79999999998776
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... ..+.+|.+.|..+.|...+ +.|++++.|+.||+||.+++..+. .++-+ .+|+
T Consensus 134 App-------~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~----sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 134 APP-------KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQ----SLEFN-------------SPVT 188 (334)
T ss_pred CCc-------hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEE----EEecC-------------CCCc
Confidence 543 3778999999999999887 889999999999999999997643 23322 5799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++.++++|++|..+..+.|.+||..+ -.+++.+..+-. |.+...+|+...++.|++|..++.|
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEE
Confidence 99999999999988888999999986 677777665433 3478899999999999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|..++..+..-.++|..||.++.|+|+|...++||+||+|||
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999995554435899999999999999999999999999999
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=256.70 Aligned_cols=282 Identities=20% Similarity=0.330 Sum_probs=224.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.| +++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------~------------------------------------- 194 (456)
T KOG0266|consen 160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------N------------------------------------- 194 (456)
T ss_pred CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------h-------------------------------------
Confidence 67899999 56677899999999999999854431 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+. +.+|...|++++|+|++++++++ .|++|++||+........
T Consensus 195 --------------------------------~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~- 240 (456)
T KOG0266|consen 195 --------------------------------LLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK- 240 (456)
T ss_pred --------------------------------hhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-
Confidence 0000 25788999999999999999999 899999999954433332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|++++|+|++ +++++|+.|++|++||+++++... .+.+|.+.|++++|+
T Consensus 241 ------~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~----------------~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 241 ------TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR----------------KLKGHSDGISGLAFS 297 (456)
T ss_pred ------EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE----------------eeeccCCceEEEEEC
Confidence 678999999999999999 999999999999999999976532 367888999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++++|++++. +.|++||+.+ +. ++..+..+.... .++.++|+|++++|++++.|+.+++||+
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 99999999875 9999999997 55 355555554331 2569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCc---eeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEcCCCCEEEE
Q 010206 429 SEGSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~ 504 (515)
..+. ....+.+|... +.....++.++++.+|+.|+.|++ +.+..........+| ...+..++|+|..+++++
T Consensus 364 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~---~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 364 RSGK-SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV---WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred cCCc-ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE---EeCCccchhhhhcCCCCCceeccccCCCcCeeee
Confidence 9874 44667777654 344455789999999999999999 322221233344467 789999999999999998
Q ss_pred Ec---CCcEEEEe
Q 010206 505 AA---SNSLYMYY 514 (515)
Q Consensus 505 ~~---~~~~~i~~ 514 (515)
++ +..+.+|.
T Consensus 440 ~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 440 SSFEGDGLIRLWK 452 (456)
T ss_pred cCcCCCceEEEec
Confidence 87 45577774
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=268.58 Aligned_cols=303 Identities=21% Similarity=0.339 Sum_probs=214.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. ..+ ....+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--------------~~~-~~~~~~~~----------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--------------IHY-PVVELASR----------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--------------ccc-ceEEeccc-----------
Confidence 3458999999999999999999999999999997542110000 000 01112222
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|++. .+.+|++++.|++|++||+.+++....
T Consensus 533 --~~v~~l~~~~~-~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------- 570 (793)
T PLN00181 533 --SKLSGICWNSY-IKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------- 570 (793)
T ss_pred --CceeeEEeccC-CCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Confidence 56899999753 356899999999999999887542211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.+++|+| ++.+|++| .|++|++||+++....
T Consensus 571 ---------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 571 ---------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred ---------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 357889999999997 78899998 8999999999876543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+. +...+.++.|++..+.+|++|+.||.|++||+++.... ...+.+|...|.++
T Consensus 612 ~--------~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---------------~~~~~~h~~~V~~v 667 (793)
T PLN00181 612 G--------TIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---------------LCTMIGHSKTVSYV 667 (793)
T ss_pred E--------EEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---------------ceEecCCCCCEEEE
Confidence 2 223 34578999996543389999999999999999875421 11245677899999
Q ss_pred EEccCCCEEEEEc-CCeEEEEEeeCC-----CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 349 KFARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 349 ~~s~~~~~l~s~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.|. ++.+|++++ |++|++||+... ..++..+.+|... +..++|+|++++|++|+.|+.
T Consensus 668 ~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~---------------i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 668 RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV---------------KNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC---------------eeEEEEcCCCCEEEEEeCCCE
Confidence 997 677888876 599999999742 2456677777654 348999999999999999999
Q ss_pred EEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 423 FRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
|++|+....... ..+. .+...+..+ ....+...|.+++|+|++..
T Consensus 732 v~iw~~~~~~~~-~s~~~~~~~~~~~~---------------------------------~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 732 VFVYHKAFPMPV-LSYKFKTIDPVSGL---------------------------------EVDDASQFISSVCWRGQSST 777 (793)
T ss_pred EEEEECCCCCce-EEEecccCCccccc---------------------------------ccCCCCcEEEEEEEcCCCCe
Confidence 999998754211 1110 000000000 00113456888888888888
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
|++|+.+| +.||.
T Consensus 778 lva~~~dG~I~i~~ 791 (793)
T PLN00181 778 LVAANSTGNIKILE 791 (793)
T ss_pred EEEecCCCcEEEEe
Confidence 88777555 77774
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=241.28 Aligned_cols=310 Identities=18% Similarity=0.260 Sum_probs=233.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|+..|+++++.|.|..|++|+.|..|++||+...... -+.++.+.-...|.
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h~---------- 216 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETHQ---------- 216 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCcccccc----------
Confidence 4578899999999999999999999999999998754321 11222223334454
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|++++|++ .+..|++.+.....+++|-.........+.. +++
T Consensus 217 ----i~sl~ys~--Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD----------------------------QYI---- 258 (641)
T KOG0772|consen 217 ----INSLQYSV--TGDQILVVSGSAQAKLLDRDGFEIVEFSKGD----------------------------QYI---- 258 (641)
T ss_pred ----cceeeecC--CCCeEEEEecCcceeEEccCCceeeeeeccc----------------------------hhh----
Confidence 99999965 4558888888889999998776544432211 111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
-| +.+ .++|...++|.+|+|+. +.|+++ .||++++||++..+..
T Consensus 259 -------------------~D--m~n-------------TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 259 -------------------RD--MYN-------------TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred -------------------hh--hhc-------------cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 11 000 47999999999999963 345565 8999999999987766
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--cee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 346 (515)
.+++. +....+..-++++++|+|++ .+||+|+.||.|.+|+.+....... . .+-..|.. .|+
T Consensus 305 ~qVik--~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~--~-----------~vk~AH~~g~~It 368 (641)
T KOG0772|consen 305 LQVIK--TKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPV--M-----------KVKDAHLPGQDIT 368 (641)
T ss_pred eeEEe--eccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccc--e-----------EeeeccCCCCcee
Confidence 66553 33444567789999999999 8999999999999999865432111 1 11234555 899
Q ss_pred EEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC------
Q 010206 347 DIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------ 419 (515)
Q Consensus 347 ~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~------ 419 (515)
||.||+||++|++. .|+++++||++...+++.+..+-... ++-+.++|||+.++|++|+.
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCC
Confidence 99999999999995 46999999999877787776544322 22347999999999999863
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|.+.+||..+- ..++.+......|..+.|+|.-..+..|+.||++++
T Consensus 436 ~g~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 436 AGTLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred CceEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 578999998876 455777777889999999999999999999999998
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=221.94 Aligned_cols=278 Identities=18% Similarity=0.251 Sum_probs=224.7
Q ss_pred CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec
Q 010206 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 243 (515)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (515)
.|.|+ ...|.|+|.++ ++++.|..|.+|++ ...+.. .. .+++|.+.|..+.|.
T Consensus 47 ~geI~-------~~~F~P~gs~~------------aSgG~Dr~I~LWnv--~gdceN-----~~-~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 47 KGEIY-------TIKFHPDGSCF------------ASGGSDRAIVLWNV--YGDCEN-----FW-VLKGHSGAVMELHGM 99 (338)
T ss_pred cceEE-------EEEECCCCCeE------------eecCCcceEEEEec--cccccc-----ee-eeccccceeEeeeec
Confidence 56677 88999999999 99999999999993 332221 11 147999999999999
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
+|+..++++ .|.+++.||.++++... .+++|...++++.-+.-|+.++.+++.|+++++||+|+....
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~--- 168 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI--- 168 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh---
Confidence 999999998 89999999999988764 668899999999877677778899999999999999987653
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
++++.. ..++++.|..++..+.+|. |+.|++||++. ...+.++.+|...
T Consensus 169 -~t~~~k-------------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt--------------- 218 (338)
T KOG0265|consen 169 -KTFENK-------------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT--------------- 218 (338)
T ss_pred -hccccc-------------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------
Confidence 233222 3589999999999999976 59999999996 8899999999876
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCC---cceeeeccCCCc----eeeEEECCCCCeeEeecCCCeEEEecCCCC
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGS---AESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRRVKGADN 474 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~ 474 (515)
|+.+..+++|.++.+-+-|.++++||++..- ..+..+++|... .-...|+|++..+..|+.|+.+.+++..
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~-- 296 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT-- 296 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc--
Confidence 6699999999999999999999999997532 223556665432 3366889999999999999999993332
Q ss_pred CccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEE
Q 010206 475 SALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYM 512 (515)
Q Consensus 475 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i 512 (515)
...+.....+|.+.|++++|+|....|.+++.|. +++
T Consensus 297 -~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 297 -SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred -cccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 2234445667999999999999999999666544 543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-32 Score=212.67 Aligned_cols=276 Identities=18% Similarity=0.262 Sum_probs=224.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
++|+++.| ..+|++.++++.|++|++|+...+.+.+.
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 89999999 67788999999999999999877654332
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
-.+|...|..++.+.|...|++| .|..+.+||+++++...
T Consensus 55 -------------------------------------YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R-- 95 (307)
T KOG0316|consen 55 -------------------------------------YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR-- 95 (307)
T ss_pred -------------------------------------ecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee--
Confidence 25788889999999999999998 89999999999988653
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|.+.|+.++|+.+. ..+++|+.|..+++||.|.... ++++. +..-...|.++..+
T Consensus 96 ------r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQi------------ldea~D~V~Si~v~ 154 (307)
T KOG0316|consen 96 ------RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQI------------LDEAKDGVSSIDVA 154 (307)
T ss_pred ------ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccch------------hhhhcCceeEEEec
Confidence 778999999999999988 8999999999999999988653 22223 33344679999887
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+..+++|+ ||+++.||++. +.....+.+|+ |++++|++|++.+..++-|+++++-|-.+
T Consensus 155 --~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred --ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccch
Confidence 56788887 59999999997 77666666665 56999999999999999999999999998
Q ss_pred CCcceeeeccCCCceeeE--EECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC-eeEEEEcCCCCEEEEEcC
Q 010206 431 GSAESTTLEASKNPMRRQ--VQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAAS 507 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~la~~~~ 507 (515)
| +++...++|.+.-..+ ++......+++||+||.|.+ |.+..........-+... |.+++++|.-..+.++..
T Consensus 215 G-klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 215 G-KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred h-HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 8 6778999998766554 55677789999999999999 333322222222223444 799999999999999998
Q ss_pred CcEEEEeC
Q 010206 508 NSLYMYYA 515 (515)
Q Consensus 508 ~~~~i~~~ 515 (515)
.+...|.+
T Consensus 291 ~~~~~~~~ 298 (307)
T KOG0316|consen 291 HGDLFWYQ 298 (307)
T ss_pred Cceeceee
Confidence 88888863
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=227.39 Aligned_cols=298 Identities=18% Similarity=0.263 Sum_probs=233.5
Q ss_pred ccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 27 TAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 27 ~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
.+...+.|.+.|.++... ++++++|++||.++|||.... ....+.+|.
T Consensus 97 ~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------------------------~~~~~~Ght------ 144 (423)
T KOG0313|consen 97 KPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------------------------SIKTIVGHT------ 144 (423)
T ss_pred Cccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc------------------------eEEEEecCC------
Confidence 344567899999999988 779999999999999997654 335678898
Q ss_pred ccccccceeEEEEEeecCC-CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 107 KSLEIEEKINKIRWCQSAN-SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
++|.+++|....+ ...|++++.|.++++|.++.++......
T Consensus 145 ------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~-------------------------------- 186 (423)
T KOG0313|consen 145 ------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL-------------------------------- 186 (423)
T ss_pred ------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH--------------------------------
Confidence 8899898864322 2359999999999999988765211100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
.. ..||...|.++...+++..+++| .|.+|.+|+..+
T Consensus 187 -------------------------------------~~-----~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 187 -------------------------------------KV-----CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred -------------------------------------hH-----hcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 00 24899999999999999999999 799999999322
Q ss_pred CC-ccccee----------------cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 265 SN-QSFNIV----------------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 265 ~~-~~~~~~----------------~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.. ...+-. ..+...+.+|.++|.++.|++. ..+++++.|.+|+.||+.++....+ ..
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~ 298 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT 298 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence 11 000000 0011367899999999999984 5899999999999999999876432 11
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
. ..++.++..+|..++|++|+ |..|++||.+++.. ..+.+.+|...+ .+
T Consensus 299 ~-------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV---------------ss 350 (423)
T KOG0313|consen 299 T-------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV---------------SS 350 (423)
T ss_pred c-------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh---------------hh
Confidence 1 14689999999999999976 59999999987433 457788888874 48
Q ss_pred EEEcCCCCE-EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 405 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 405 ~~~s~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
+.|+|...+ |++|+.|+++++||+++.+..+..+.+|.+.|-++.|. ++.++++|+.|.++++.++
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999997665 78999999999999999876778999999999999996 5678999999999999443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=241.52 Aligned_cols=278 Identities=18% Similarity=0.233 Sum_probs=231.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
++|.++.++|..+ .++++-.+|.|.||+.++..+.+.+..
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV-------------------------------------- 53 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEV-------------------------------------- 53 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeee--------------------------------------
Confidence 8899999988766 999999999999999998765443321
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..-+|++..|-+..+++++| +|..|++|+.++.++..
T Consensus 54 ----------------------------------------~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-- 91 (794)
T KOG0276|consen 54 ----------------------------------------SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-- 91 (794)
T ss_pred ----------------------------------------cccchhhheeeeccceEEEecCCceEEEEecccceeeE--
Confidence 12466777788888999999 89999999999888664
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.++.|.+.|++++.+|.. .++++++.|-.|++||-+..=.+ ..++.||...|++++|.
T Consensus 92 ------~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---------------~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 92 ------TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---------------EQTFEGHEHYVMQVAFN 149 (794)
T ss_pred ------EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---------------eeEEcCcceEEEEEEec
Confidence 778999999999999998 79999999999999999765332 23477888999999999
Q ss_pred c-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC--CEEEEecCCCcEEEEe
Q 010206 352 R-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFG 427 (515)
Q Consensus 352 ~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~s~dg~i~iw~ 427 (515)
| |.+.+++++ |++|+||.+.. ..+..++.+|... |.++++-+-| .+|+||++|.+|+|||
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekG---------------VN~Vdyy~~gdkpylIsgaDD~tiKvWD 213 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKG---------------VNCVDYYTGGDKPYLISGADDLTIKVWD 213 (794)
T ss_pred CCCccceeeeeccccEEEEEcCC-CCCceeeeccccC---------------cceEEeccCCCcceEEecCCCceEEEee
Confidence 9 778899987 59999999986 8889999999876 4488887644 6999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..+..+. ++|++|...|..+.|+|.-+.+++||+||++||+..... .+...+.--..+|.+++-.+.++.+++|.+
T Consensus 214 yQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 214 YQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred cchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 9987555 899999999999999999999999999999999332222 222222223578999999999999999999
Q ss_pred CcEEEEe
Q 010206 508 NSLYMYY 514 (515)
Q Consensus 508 ~~~~i~~ 514 (515)
++.++.+
T Consensus 290 eg~i~v~ 296 (794)
T KOG0276|consen 290 EGSVTVK 296 (794)
T ss_pred CCcEEEE
Confidence 9987765
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=211.79 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=225.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|..+++-+.|+.+|.+|.+++.|..+.||-..+++ .+.++.+|.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt--------- 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT--------- 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC---------
Confidence 456899999999999999999999999999999987776 447899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|.++.. +.+.+++++|+.|.++++||+++|+.+...+..
T Consensus 53 ---GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~---------------------------------- 93 (327)
T KOG0643|consen 53 ---GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN---------------------------------- 93 (327)
T ss_pred ---ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC----------------------------------
Confidence 99999999 667789999999999999999999866553322
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLE 263 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~ 263 (515)
..|..+.|+++|++++.+ + .+.|.++|++
T Consensus 94 ---------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 94 ---------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred ---------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 567788899998888776 3 4678999998
Q ss_pred CCCcccceecccC-ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 264 ISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
....... .-.| ..+..+...++.+-|.|-+ ..|++|..||.|..||.++++.... ....|.
T Consensus 129 ~~~~~~~--s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~---------------s~~~h~ 190 (327)
T KOG0643|consen 129 DDSSDID--SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVD---------------SDEEHS 190 (327)
T ss_pred CChhhhc--ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeee---------------chhhhc
Confidence 4331100 0000 1345567889999999998 8999999999999999999864321 134577
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS 420 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~d 420 (515)
..|+.+++++|..++++++. .+-++||+.+ -..++++..... |.+.+++|....++.|+ .+
T Consensus 191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqe 253 (327)
T KOG0643|consen 191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQE 253 (327)
T ss_pred cccccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCce
Confidence 89999999999999999875 9999999997 777888765432 44889999877776554 32
Q ss_pred C-cEEEEecCCC-----------CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 N-LFRVFGCSEG-----------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 g-~i~iw~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
- .|.-=+.+.+ .+.+..+++|..|+++++++|+|+..+||++||.||+
T Consensus 254 A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 254 AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 1 1211122222 1233567799999999999999999999999999999
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=228.06 Aligned_cols=269 Identities=13% Similarity=0.254 Sum_probs=221.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
...+.|.|+.+. ...+++|..|++|+|||..+-. +...+.||.
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------ 237 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------ 237 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------
Confidence 356889999985 4479999999999999986544 456788998
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.|+.|. ...+++|+.|.+|++||+++++....
T Consensus 238 GSVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~t----------------------------------------- 272 (499)
T KOG0281|consen 238 GSVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNT----------------------------------------- 272 (499)
T ss_pred CcEEeeecc----ceEEEecCCCceEEEEeccCCchhhH-----------------------------------------
Confidence 999999993 45899999999999999999874332
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+-+|...|..+.|+ ..+++++ .|.++.+||+..+.... +
T Consensus 273 -------------------------------------lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it-~ 312 (499)
T KOG0281|consen 273 -------------------------------------LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDIT-L 312 (499)
T ss_pred -------------------------------------HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHH-H
Confidence 34678888888886 4478888 89999999998765321 1
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
. +.+.+|...|+.+.|+. +++++++.|++|++|++.++..+. ++.+|...|.|+.+.
T Consensus 313 r----rVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvR----------------tl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 313 R----RVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVR----------------TLNGHKRGIACLQYR 369 (499)
T ss_pred H----HHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeeh----------------hhhcccccceehhcc
Confidence 1 36789999999999974 699999999999999999987643 367788899998875
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
++++++|+. .+|++||+.. +.++..+.+|+..+. ++.| |.+.+++|+.||+|++||+.+
T Consensus 370 --~rlvVSGSSDntIRlwdi~~-G~cLRvLeGHEeLvR---------------ciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 370 --DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEELVR---------------CIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred --CeEEEecCCCceEEEEeccc-cHHHHHHhchHHhhh---------------heee--cCceeeeccccceEEEEeccc
Confidence 889999864 9999999997 999999999998744 7888 567899999999999999987
Q ss_pred CCcc--------eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAE--------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+... +.++..|...|-.+.| |...+++++.|.+|-+
T Consensus 430 aldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 430 ALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILI 473 (499)
T ss_pred ccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence 6433 2455678888888888 5668999999999998
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=234.53 Aligned_cols=277 Identities=20% Similarity=0.339 Sum_probs=220.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+| +++++++++.|+.|++|++.+++....
T Consensus 10 ~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------------- 46 (289)
T cd00200 10 GGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT----------------------------------------- 46 (289)
T ss_pred CCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence 8899999954 567999999999999999887541111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|...+..+.|+|+++.|+++ .++.|++||+...+...
T Consensus 47 -------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-- 87 (289)
T cd00200 47 -------------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-- 87 (289)
T ss_pred -------------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--
Confidence 23566778899999999999988 79999999998654332
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|...+.++.|+|++ .++++++.++.+++||+++++... . +..|...+.++.|+
T Consensus 88 ------~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~----~------------~~~~~~~i~~~~~~ 144 (289)
T cd00200 88 ------TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLT----T------------LRGHTDWVNSVAFS 144 (289)
T ss_pred ------EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEE----E------------eccCCCcEEEEEEc
Confidence 445678899999999997 788888889999999998654321 1 33456789999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|+++++++++ ++.|++||++. .+.+..+..|... +.+++|+|+++.+++++.|+.|++||+..
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999999988 69999999985 6777777765533 45899999999999999999999999987
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS- 509 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~- 509 (515)
+ .....+..|..++..+.++|++.++++++.|+.+++++.... ........|...|.+++|+|++++|++++.++
T Consensus 209 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 209 G-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred C-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence 6 455677788899999999999999999998999999433211 11112225678899999999999999888765
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|.
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 77773
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=235.79 Aligned_cols=289 Identities=21% Similarity=0.351 Sum_probs=224.3
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|+++.|.|. .+.+|++++.|+.|+||++....
T Consensus 207 ~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDR------------------------- 248 (503)
T ss_pred eeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecCc-------------------------
Confidence 35577777 88999999773 35789999999999999987621
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
.+.++ ..+|..+|.+++|+++|..|+++
T Consensus 249 ---------------------------------------------------~~lrt-f~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 249 ---------------------------------------------------RCLRT-FKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred ---------------------------------------------------ceehh-hhcchhhhhhhhccccCCeeeee
Confidence 12222 36899999999999999999998
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
-|+.|++||+++++....+ .....++|+.|+|++++.|++|+.|+.|+.||+|+++.+.+
T Consensus 277 sfD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe---------- 337 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE---------- 337 (503)
T ss_pred ecceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH----------
Confidence 7999999999999866432 13556899999999989999999999999999999987543
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
+..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..+++....+... ..-++..+|+
T Consensus 338 ------Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~h--------------smP~~~~~P~ 396 (503)
T KOG0282|consen 338 ------YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMH--------------TMPCLTLHPN 396 (503)
T ss_pred ------HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhc--------------cCcceecCCC
Confidence 4556689999999999999999877 9999999986 4444333222110 0128999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC--cceeeeccCCCc--eeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS--AESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 486 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~ 486 (515)
+++++.=+.|+.|.+|.+...- .....+++|..+ -..+.|||||.+|++|+.||.+.+++.. ...+......|
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk---t~kl~~~lkah 473 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK---TTKLVSKLKAH 473 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech---hhhhhhccccC
Confidence 9999999999999999876431 223567788644 4577899999999999999999993322 12344445568
Q ss_pred cCCeeEEEEcCCC-CEEEEEcCCc-EEEEe
Q 010206 487 SMKLLHLAWHPSE-NSIACAASNS-LYMYY 514 (515)
Q Consensus 487 ~~~i~~~~~s~~~-~~la~~~~~~-~~i~~ 514 (515)
.+.+..+.|+|.. ..+|+++-+| +.+|.
T Consensus 474 ~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceEEEEecCCCcceeEecccCceeEecC
Confidence 8999999999985 4667776555 77773
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=218.58 Aligned_cols=310 Identities=17% Similarity=0.236 Sum_probs=232.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|..++.+.+|||||.++|+|+.|-.|+|.|++..-....++.-..+. .-+.+ ..+.++..|.
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~--~qa~h---PvIRTlYDH~----------- 172 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD--TQARH---PVIRTLYDHV----------- 172 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC--cccCC---ceEeehhhcc-----------
Confidence 4699999999999999999999999999999987322111111111000 11112 2556677777
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|+++.|+|. ...|++++.|++|++||+.....++..+.
T Consensus 173 -devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------------- 212 (430)
T KOG0640|consen 173 -DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------------- 212 (430)
T ss_pred -Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHHHH-------------------------------------
Confidence 88999999775 45999999999999999876432221110
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.....+|.++.|+|.|.+|+.| +-.++++||+++-+....
T Consensus 213 ---------------------------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 213 ---------------------------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred ---------------------------------------hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 1223678999999999999999 889999999997665432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc-cceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 349 (515)
- ..-.+|.+.|+++.+++.+ ++.++++.||.|++||--.++++.. +.. .|. +.|.+..
T Consensus 254 a-----nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t----~~~-----------AH~gsevcSa~ 312 (430)
T KOG0640|consen 254 A-----NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRT----IGN-----------AHGGSEVCSAV 312 (430)
T ss_pred c-----CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHH----HHh-----------hcCCceeeeEE
Confidence 1 1335699999999999999 9999999999999999877765432 221 121 5799999
Q ss_pred EccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEe
Q 010206 350 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~ 427 (515)
|..+|+++++.+ |..+++|.+.+ ++++.++.+......... .+...|+....|++.-. ..+.+.-||
T Consensus 313 Ftkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~~----------rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 313 FTKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQKH----------RTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred EccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchhh----------hhhhhhcCccceEEccccccCceeecc
Confidence 999999999854 69999999997 899999987643221100 12456777777776554 457899999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++...+..---+|..+++.+..+|.++.+++|+.|...|+
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 99874443444699999999999999999999999999998
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=243.47 Aligned_cols=270 Identities=19% Similarity=0.313 Sum_probs=198.2
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCcccc-----------------------------Cccccc--
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR-----------------------------DLEMMD-- 81 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~-----------------------------~~~~~~-- 81 (515)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+....... ......
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999999999999999999999999999877221100000 000000
Q ss_pred -ccccCCc------cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 82 -YSMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 82 -~~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
.. ...| .-+...+|.||. +.|..|.|+ .+ .+|++++.|++|++|++...++...
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSWS--Kn-~fLLSSSMDKTVRLWh~~~~~CL~~--- 405 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHT------------ADILDLSWS--KN-NFLLSSSMDKTVRLWHPGRKECLKV--- 405 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccc------------hhheecccc--cC-CeeEeccccccEEeecCCCcceeeE---
Confidence 01 0111 112334567777 889999994 44 5999999999999999886654332
Q ss_pred cCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc
Q 010206 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD 234 (515)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
-.|.
T Consensus 406 ----------------------------------------------------------------------------F~Hn 409 (712)
T KOG0283|consen 406 ----------------------------------------------------------------------------FSHN 409 (712)
T ss_pred ----------------------------------------------------------------------------EecC
Confidence 2578
Q ss_pred CCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..|+|++|+| |.++|++| =|+.|+||++...+-. ....-..-|++++|.|+| +..+.|+.+|.+++|+
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---------~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~ 479 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---------DWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYD 479 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeE---------eehhhhhhheeEEeccCC-ceEEEEEeccEEEEEE
Confidence 9999999999 78899999 6999999999754422 122235789999999999 8999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCC--CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.+..++... +........ -..|. .|+.+.|.|.. +.|++..|..|+|+|.+. ..++..|++......+
T Consensus 480 t~~lk~~~~----~~I~~~~~K---k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ- 549 (712)
T KOG0283|consen 480 TEGLKLVSD----FHIRLHNKK---KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQ- 549 (712)
T ss_pred ccCCeEEEe----eeEeeccCc---cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcc-
Confidence 988765432 111111000 11122 79999999833 478888889999999985 7888888877654331
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
....|+.||++|+++++|..|++|++.
T Consensus 550 ------------~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 550 ------------ISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ------------eeeeEccCCCEEEEeecCceEEEEeCC
Confidence 268899999999999999999999984
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-30 Score=207.46 Aligned_cols=267 Identities=16% Similarity=0.275 Sum_probs=212.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ..+|..|++++.|+++.+|++...+......
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~~~--------------------------------------- 59 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKELV--------------------------------------- 59 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhhhc---------------------------------------
Confidence 88999999 6778999999999999999988653111000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+|...|-.++|+|. ...|+++ .|.+|++||++..++...
T Consensus 60 -------------------------------------~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 60 -------------------------------------YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred -------------------------------------ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE
Confidence 2578888899999874 5667777 899999999998887654
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+. .+..=.-+.|+|+| .+++.++.|..|.+.|.++.+...+.... ..+..+.|
T Consensus 103 i~---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~-----------------~e~ne~~w 155 (313)
T KOG1407|consen 103 IE---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFK-----------------FEVNEISW 155 (313)
T ss_pred ee---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhccc-----------------ceeeeeee
Confidence 32 12333467899999 89999999999999999987654332222 24677888
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.++.+++.-+. |.|.|..... -+++..+..|... ..++.|+|+|+++|+|+.|..+.+||+.
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChh
Confidence 877777776655 9999999985 8999999999854 2389999999999999999999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.--++ ..+..+.-||+.+.|+.+|++||++|+|-.|-| ..|.+.+ + +.+.++...++|+|...+||.++
T Consensus 220 ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~--e-----I~~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 220 ELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW--E-----IPCEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred Hhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE--E-----eeccCCceeEEecCCCceeeEEe
Confidence 65333 678889999999999999999999999999998 3333333 1 23578889999999999999776
Q ss_pred CC
Q 010206 507 SN 508 (515)
Q Consensus 507 ~~ 508 (515)
++
T Consensus 292 dd 293 (313)
T KOG1407|consen 292 DD 293 (313)
T ss_pred cC
Confidence 43
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=242.07 Aligned_cols=293 Identities=14% Similarity=0.163 Sum_probs=229.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+|-.++|+|+.+ .++++-..|.|++||.+.+.+...
T Consensus 10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli~r----------------------------------------- 46 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLIDR----------------------------------------- 46 (1202)
T ss_pred ccccceecCCCCC--EEEEeecCceeeeehhhhhhHHhh-----------------------------------------
Confidence 6799999988766 999999999999999887642211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+..|.++|+.++|+|++.+|++| +|..|++|+..+.+..+
T Consensus 47 -------------------------------------FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-- 87 (1202)
T KOG0292|consen 47 -------------------------------------FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-- 87 (1202)
T ss_pred -------------------------------------hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh--
Confidence 36899999999999999999998 89999999999877765
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+|-+.|+.+.|++.- ..|++++.|.+|+||+..+++++. +++||...|+|.+|+
T Consensus 88 ------tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~ia----------------vltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 88 ------TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIA----------------VLTGHNHYVMCAQFH 144 (1202)
T ss_pred ------hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEE----------------EEecCceEEEeeccC
Confidence 678999999999999998 799999999999999999987642 378899999999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCC-----e---eeEeeeccc------cccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGP-----V---ATFQVHEHL------RPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~-----~---~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
|...++++++ |.+|+|||+.- -+. - ..+.++... ...+.+.--.+.-.+|.-++|+|.-.+|++
T Consensus 145 ptEDlIVSaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS 223 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS 223 (1202)
T ss_pred CccceEEEecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence 9999999998 59999999862 110 0 001111100 000011111122234668999999999999
Q ss_pred ecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 417 GSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
|++|..|++|.++..+ ..+.+..+|.++|.++.|+|....++|.|+|+++|+++-.+. +-.....--..+-..++-
T Consensus 224 G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laa 300 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAA 300 (1202)
T ss_pred cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEe
Confidence 9999999999997543 445778899999999999999999999999999999332221 111111112567889999
Q ss_pred cCCCCEEEEEcCCcEEEEe
Q 010206 496 HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~~~i~~ 514 (515)
+|..+++|.|.++|+.+|-
T Consensus 301 hP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 301 HPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred cCCcceeeeecCCceEEEE
Confidence 9999999999999999984
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=229.70 Aligned_cols=422 Identities=15% Similarity=0.189 Sum_probs=288.2
Q ss_pred cccccccceEEEEECCCCC---eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee----------eec
Q 010206 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEF 96 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~---~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 96 (515)
+..||.+.|.+++|+.-+. +||+++.|..||||.+.-+......+....... ..-.|.+... ..+
T Consensus 186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~--~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT--LSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc--ccCCceeeeeeeEEEEEehhhhh
Confidence 4569999999999998544 899999999999999865543221111111000 1112222211 234
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
.||+ ..|+++.|. +++..|++++.|+++.+|...+..-............ ...+..+ .
T Consensus 264 ~GHe------------DWV~sv~W~--p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g 321 (764)
T KOG1063|consen 264 MGHE------------DWVYSVWWH--PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------G 321 (764)
T ss_pred cCcc------------cceEEEEEc--cchhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------e
Confidence 5787 999999995 4566899999999999999876633333222211100 1122233 6
Q ss_pred ceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCC
Q 010206 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 255 (515)
Q Consensus 177 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~ 255 (515)
..|+|++..+ ++-+..|..++|. ..+ .. .-.....+.||...|.+++|+|.|++|++. .|.
T Consensus 322 ~lw~~n~~~i------------i~~g~~Gg~hlWk--t~d---~~-~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ 383 (764)
T KOG1063|consen 322 GLWSPNSNVI------------IAHGRTGGFHLWK--TKD---KT-FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ 383 (764)
T ss_pred EEEcCCCCEE------------EEecccCcEEEEe--ccC---cc-ceeeccccccccccceeeeecCCCCEEEEecccc
Confidence 7889999877 8889999999886 111 11 112223358999999999999999999997 799
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc------cc---------
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL------CD--------- 320 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~------~~--------- 320 (515)
+-|++-.-..+....-+ .+ -+-|...++|++|-+.. ..|++|.....+|+|+....-. +.
T Consensus 384 TTRlFa~wg~q~~wHEi-aR---PQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 384 TTRLFARWGRQQEWHEI-AR---PQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ceeeecccccccceeee-cc---cccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 99998765222221111 12 23477889999998854 7899999999999998653210 00
Q ss_pred -----------ccccee--------------eec---------cCC-----------CccccccccccceeEEEEccCCC
Q 010206 321 -----------THSKLF--------------EEQ---------EAP-----------GTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 321 -----------~~~~~~--------------~~~---------~~~-----------~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+--.+ +.. ..| .....+.||-..|.+++.+|+|+
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 000000 000 000 00123567889999999999999
Q ss_pred EEEEEc-----C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 356 HILSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 356 ~l~s~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
++|++. . ..|++|+..+ -...+.+.+|.-. |+.++|||||++|++.+.|.++.+|...
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred EEeehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeee
Confidence 999853 2 6799999986 6777788888865 6799999999999999999999999986
Q ss_pred CCCcce---eeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC-CccccccCCeeEEEEcCC-C----C
Q 010206 430 EGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHPS-E----N 500 (515)
Q Consensus 430 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~-~----~ 500 (515)
...... ..++.|..-|....|+|++++++++|.|++|+++.-.+.....+. ...+.+...|++++|.|- . .
T Consensus 603 ~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~ 682 (764)
T KOG1063|consen 603 EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGD 682 (764)
T ss_pred cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccc
Confidence 543222 347899999999999999999999999999999332222111111 134567899999999874 2 2
Q ss_pred EEEEEcCCc-EEEEe
Q 010206 501 SIACAASNS-LYMYY 514 (515)
Q Consensus 501 ~la~~~~~~-~~i~~ 514 (515)
.+++|-..| +++|.
T Consensus 683 ~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 683 VVAVGLEKGEIVLWR 697 (764)
T ss_pred eEEEEecccEEEEEe
Confidence 677888766 77774
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=204.03 Aligned_cols=278 Identities=15% Similarity=0.245 Sum_probs=221.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|...|.+|+|+.+|..||+|+.|+++.||++...+.. ......+|.
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~--------- 64 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT--------- 64 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC---------
Confidence 34589999999999999999999999999999999766432 223466777
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|-.++|.|..+ ..|++++.|++|++||++.++........
T Consensus 65 ---~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~---------------------------------- 106 (313)
T KOG1407|consen 65 ---DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETK---------------------------------- 106 (313)
T ss_pred ---cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeecc----------------------------------
Confidence 7899999987554 58999999999999999998755443221
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
..=.-+.|+|+|++++++ .|..|...|.++.+..
T Consensus 107 ---------------------------------------------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~ 141 (313)
T KOG1407|consen 107 ---------------------------------------------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIV 141 (313)
T ss_pred ---------------------------------------------CcceEEEEcCCCCEEEEecCcccEEEEEeccccee
Confidence 111247899999999998 7999999999866543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. -+.....+..+.|+.++ .+|+.....|.|.|......+.+ ..+..|.....|+
T Consensus 142 ~---------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv----------------~si~AH~snCicI 195 (313)
T KOG1407|consen 142 N---------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPV----------------QSIKAHPSNCICI 195 (313)
T ss_pred e---------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccccc----------------cccccCCcceEEE
Confidence 2 22345667889999776 78887778899999887655432 2367788999999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|+|+|+++|+|+. -.+.+||+.. .-+++.+..++-. |..+.||.||++||+||+|..|-|=+
T Consensus 196 ~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldwp---------------VRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 196 EFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDWP---------------VRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred EECCCCceEeeccccceeeccChhH-hhhheeeccccCc---------------eEEEEeccCcceeeccCccceEEeEe
Confidence 99999999999875 8999999984 7778888777655 45899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
+++|..+ ..+ .+..+...++|+|...+||.+..|.
T Consensus 260 vetGd~~-~eI-~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 260 VETGDRV-WEI-PCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cccCCeE-EEe-eccCCceeEEecCCCceeeEEecCC
Confidence 9998433 222 4577888999999999999887764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=204.32 Aligned_cols=278 Identities=19% Similarity=0.246 Sum_probs=214.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-...|+++.|+++|.+|++++.|..++|||..+++.. .++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~-----------------------~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV-----------------------KTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee-----------------------eEeeccc------------c
Confidence 4678999999999999999999999999999887743 4455554 5
Q ss_pred eeEEEEEeecCCCcEEEeeeC--CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.|..++|... ...++.++. |.+|+..++.+.+..+.
T Consensus 58 G~~~~~Fth~--~~~~i~sStk~d~tIryLsl~dNkylRY---------------------------------------- 95 (311)
T KOG1446|consen 58 GVDLACFTHH--SNTVIHSSTKEDDTIRYLSLHDNKYLRY---------------------------------------- 95 (311)
T ss_pred cccEEEEecC--CceEEEccCCCCCceEEEEeecCceEEE----------------------------------------
Confidence 6888888543 335555554 88999988887653222
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..||...|++++.+|-+..++++ -|++|++||++..+....
T Consensus 96 --------------------------------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 96 --------------------------------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred --------------------------------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 47999999999999999999998 799999999997665432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+ +...-..++|.|+| -++|++.....|++||+|.-..- ...++... .+-....+.+.|
T Consensus 138 l----------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dkg--PF~tf~i~---------~~~~~ew~~l~F 195 (311)
T KOG1446|consen 138 L----------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDKG--PFTTFSIT---------DNDEAEWTDLEF 195 (311)
T ss_pred E----------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCCC--CceeEccC---------CCCccceeeeEE
Confidence 2 22333567899999 88888888889999999875321 11222211 012256899999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
||||++|+.++. +.+++.|.-. +..+.++..+..... +. .+.+|+||++++++|+.||+|.+|+++
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~----------~~--~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGN----------LP--LSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCC----------cc--eeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 999999998877 8999999986 788888887765421 00 278999999999999999999999999
Q ss_pred CCCcceeeecc-CCCceeeEEECCCCCeeEeecC
Q 010206 430 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 430 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
++ .....+.+ +..++..+.|.|.-..+++++.
T Consensus 263 tg-~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 263 TG-KKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CC-cEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 98 45567776 7899999999998777777654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=221.50 Aligned_cols=293 Identities=20% Similarity=0.262 Sum_probs=224.9
Q ss_pred hhhhhcccccccccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc
Q 010206 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (515)
+-.+|........-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+..... ...+.
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheee
Confidence 34556666666678999999999999976 7899999999999999987653 36788
Q ss_pred cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
+|+ +.|..|++. . ..+++++.|++|+.|.+.... .....
T Consensus 107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~p-~~til------------------------ 145 (433)
T KOG0268|consen 107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGPP-LHTIL------------------------ 145 (433)
T ss_pred ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCCc-ceeee------------------------
Confidence 998 899999994 3 479999999999999987631 11000
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcE
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 257 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i 257 (515)
-...+..+.-+..+..++++. ..|
T Consensus 146 -------------------------------------------------------g~s~~~gIdh~~~~~~FaTcG-e~i 169 (433)
T KOG0268|consen 146 -------------------------------------------------------GKSVYLGIDHHRKNSVFATCG-EQI 169 (433)
T ss_pred -------------------------------------------------------ccccccccccccccccccccC-cee
Confidence 002223333334455566652 358
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.|||.+...+.. ++......|.++.|+|....+|+++..|+.|.+||+++...+.+.+..
T Consensus 170 ~IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------ 229 (433)
T KOG0268|consen 170 DIWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------ 229 (433)
T ss_pred eecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------
Confidence 899997655442 556667889999999998789999999999999999998765442222
Q ss_pred ccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 338 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 338 ~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..-+.++|+|.+-.+++|++ ..++.||++.-..++....+|... |+++.|||.|+-+++
T Consensus 230 -----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 230 -----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVS 289 (433)
T ss_pred -----ccccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhcc
Confidence 23467899997777777875 999999999877788888888765 679999999999999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
||.|.+|+||..+.+.....-.......|.++.|+.|.++++|||.|+.||++++
T Consensus 290 gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred ccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999998764332222233456889999999999999999999999443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=211.21 Aligned_cols=335 Identities=11% Similarity=0.096 Sum_probs=249.8
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
..|..|. ..|.+++.+| +.+++++|+.|..-.+|++.++........+ ...|.
T Consensus 58 ~tF~~H~------------~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------KDSVt----- 110 (399)
T KOG0296|consen 58 VTFDKHT------------DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------KDSVT----- 110 (399)
T ss_pred eehhhcC------------CceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEecCC--------CCceE-----
Confidence 4677888 8899999977 5569999999999999999999865555544 23344
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
.+.|+.||.+| ++|+-+|.+++|.+ .. +..+.. +......+.-+.|+|.+..|++|
T Consensus 111 --~~~FshdgtlL------------ATGdmsG~v~v~~~--st------g~~~~~-~~~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 111 --CCSFSHDGTLL------------ATGDMSGKVLVFKV--ST------GGEQWK-LDQEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred --EEEEccCceEE------------EecCCCccEEEEEc--cc------CceEEE-eecccCceEEEEecccccEEEeec
Confidence 88999999999 99999999999992 22 122222 23445678889999999999999
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.||.+-.|.+.+.... ..+.+|+.++++=.|.|+| +.++++..||+|++||+.++....+ ....+
T Consensus 168 ~DGsvWmw~ip~~~~~--------kv~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~----~~~~e-- 232 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQALC--------KVMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHK----ITQAE-- 232 (399)
T ss_pred CCCcEEEEECCCccee--------eEecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEE----ecccc--
Confidence 8999999999865333 2678899999999999999 9999999999999999999865422 11110
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.....++.++..+..++.|+. +.+++-+..+ ++.+....+.. +.+ ..........|-++.++..=
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~---~~l-~~~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 233 ---------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTV---PEL-KPSQEELDESVESIPSSSKL 298 (399)
T ss_pred ---------cCcCCccccccccceeEeccCCccEEEEcccc-ceEEEecCCCC---ccc-cccchhhhhhhhhccccccc
Confidence 134667788888888888865 7777777665 55554444210 000 00111112223356667677
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 491 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 491 (515)
.+.|+|+-||+|.|||+... .....-.|..+|..+.|.+ ..+|++++.+|.|+.++ .....+.....+|+..|.
T Consensus 299 pL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD---aRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD---ARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred chhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeee---ccccceEEEEecCchhee
Confidence 78899999999999999864 3345567888999999999 78999999999999922 222234445668999999
Q ss_pred EEEEcCCCCEEEEEcCCc-EEEE
Q 010206 492 HLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 492 ~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
+++.+|+.++++++++++ ..||
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 999999999999888665 5555
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-31 Score=218.87 Aligned_cols=235 Identities=16% Similarity=0.231 Sum_probs=186.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|.+.|.|+.|. .+.+++| +|.+|++||+++++... ++-+|.+.|..+.|+. .++++++.|.+|
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------tlihHceaVLhlrf~n---g~mvtcSkDrsi 299 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSN---GYMVTCSKDRSI 299 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--------HHhhhcceeEEEEEeC---CEEEEecCCcee
Confidence 47999999999884 5588998 89999999999988664 5677999999999985 489999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+||+...... ....++.||...|+.+.|+ .+++++++ |.+|++|++.+ ...+.++.+|....
T Consensus 300 aVWdm~sps~i-------------t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 300 AVWDMASPTDI-------------TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI 363 (499)
T ss_pred EEEeccCchHH-------------HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeehhhhcccccc
Confidence 99999765421 1134578899999999997 55999976 49999999997 99999999987542
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
.|..-.++++++||.|.+|++||++.|.+ +..|++|.+-|+++.| +.+.+++|..||+|+
T Consensus 364 -----------------AClQYr~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 364 -----------------ACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred -----------------eehhccCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 23334789999999999999999999854 4899999999999999 566899999999999
Q ss_pred EecCCCCCcc-----cc-CCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 468 RVKGADNSAL-----DA-NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 468 l~~~~~~~~~-----~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+++-..-.+. ++ ...+..|.+.|..+.|.. -+.+++..++.+.||+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWD 475 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEE
Confidence 9222111100 01 112346888999999953 4555666788999996
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=205.83 Aligned_cols=280 Identities=17% Similarity=0.251 Sum_probs=216.4
Q ss_pred EEEEECC-CCCeEEeec-------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 39 SAIEFDK-SGDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 39 ~~v~~s~-~g~~lasg~-------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.++.||| -.++||.+. .+|++.|-++...+-+ .++ .+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e~----------~s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QEC----------QSYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EEE----------Eeee
Confidence 4789999 233444432 3678888887643321 111 2233
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.+..+..++|+++.+ ..+++++.||++++||+.....
T Consensus 59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s~------------------------------------------ 95 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPSK------------------------------------------ 95 (311)
T ss_pred cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCCc------------------------------------------
Confidence 347899999987655 5888999999999999433210
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.|. . .+.|..+|.++.|++. ++.++++ .|++|++|+...++..
T Consensus 96 ---------------Pi~-------------------~-~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 96 ---------------PIH-------------------K-FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred ---------------chh-------------------H-HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 011 1 3689999999999984 5556666 7999999999866644
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ++.+|...|+..+|+|..++++++++.|+++++||++.... ...+..|...|.++
T Consensus 141 ~--------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------------~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 141 Q--------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------------FMSIEAHNSEILCC 196 (311)
T ss_pred E--------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------------eeEEEeccceeEee
Confidence 3 67899999999999999889999999999999999976422 11255677889999
Q ss_pred EEcc-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEE
Q 010206 349 KFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRV 425 (515)
Q Consensus 349 ~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~i 425 (515)
.|+. +...|++|+ |+.|+.||+++-..++..+.+|.-. |..+.|||.. ..||+++.|-+++|
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---------------VRkvk~Sph~~~lLaSasYDmT~ri 261 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---------------VRKVKFSPHHASLLASASYDMTVRI 261 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceE---------------EEEEecCcchhhHhhhccccceEEe
Confidence 9998 666777775 5999999999877888888888766 4589999964 57899999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
||...+...+.+...|.+-+..+.+++ +..++|+.++|..+.+
T Consensus 262 w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 262 WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred cccccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 999876566678889999999999987 4568999999999998
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=229.84 Aligned_cols=380 Identities=11% Similarity=0.150 Sum_probs=281.2
Q ss_pred eEEEEECCC--CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 38 v~~v~~s~~--g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
|+++. +|. =+.++.|+.+|.+.||++.+++. +.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~-----------------------v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV-----------------------VYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcE-----------------------EEEecccc------------cce
Confidence 77664 563 35688999999999999998874 46788887 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
+++.=+|--| .++.|..+|+|.+++++.++....++.. .|.|. +++|..||..+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d--------~g~Vt-------slSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQD--------WGRVT-------SLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcc--------cccee-------EEEeccCCCee---------
Confidence 9999877666 8999999999999999999887776654 35555 89999999876
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+++++..|.+-+|| +.... ........|.+.|....|.|....++++ .|..+++|-.+++.-..+++
T Consensus 260 --las~~~~G~m~~wD--Le~kk------l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L-- 327 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWD--LEKKK------LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL-- 327 (910)
T ss_pred --EEeccCCceEEEEE--cCCCe------eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe--
Confidence 36777789999999 33322 1222235788999999999999999997 79999999776555433332
Q ss_pred cCccccccCCceEEEEEe-cCCCcEEEEEecCCeEEEEecCccccccc--------------------------------
Q 010206 275 KPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDT-------------------------------- 321 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------------------- 321 (515)
+.-.+|..+..+++|. .++ ..+.+++.|++.+.+++.......+
T Consensus 328 --R~R~GHs~Pp~~irfy~~~g-~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 328 --RSRGGHSAPPSCIRFYGSQG-HFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred --eeccCCCCCchheeeeccCc-EEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 2447899999999998 455 8999999999999888653211100
Q ss_pred ------------------ccceeeeccCCCcc-----ccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 322 ------------------HSKLFEEQEAPGTR-----SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 322 ------------------~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
..++|+-.+...-. ..+......+++++.+++|++.+.|.. |.|.+|++.+ +...
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r 483 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHR 483 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceee
Confidence 00111111100000 001112357899999999999999976 9999999996 6666
Q ss_pred eeEe---eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc---------------------
Q 010206 378 ATFQ---VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--------------------- 433 (515)
Q Consensus 378 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~--------------------- 433 (515)
..+. .|... |+.++...-++.+++++.+|.+++||.+....
T Consensus 484 ~sf~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 484 KSFGDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL 548 (910)
T ss_pred cccccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh
Confidence 6663 44443 56899988899999999999999999986520
Q ss_pred -------------------ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 434 -------------------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 434 -------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
....+.+|.+.++.+.|||||+||++++.|++||+ |.+....+ ...+....+.+++.
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt~~l-ID~~~vd~~~~sls 624 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPTGTL-IDGLLVDSPCTSLS 624 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccCcce-eeeEecCCcceeeE
Confidence 11233489999999999999999999999999999 33321111 12223467889999
Q ss_pred EcCCCCEEEEEc--CCcEEEEe
Q 010206 495 WHPSENSIACAA--SNSLYMYY 514 (515)
Q Consensus 495 ~s~~~~~la~~~--~~~~~i~~ 514 (515)
|||.|.+||++. .+|+++|.
T Consensus 625 ~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 625 FSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred ECCCCCEEEEEEecCceEEEEE
Confidence 999999999886 46899996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=214.09 Aligned_cols=384 Identities=14% Similarity=0.163 Sum_probs=269.1
Q ss_pred ccccccccccccceEEEEECCCCCeEEeecCCC--------eEEEEEcccCcccCccccCcccccccccCCccceeeeec
Q 010206 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (515)
Q Consensus 25 ~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg--------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (515)
++.+-.+.+|.+.|.|++.+||.-.+|+|-..| .|+|||..+-.. +..+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T-----------------------L~V~ 150 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST-----------------------LHVI 150 (626)
T ss_pred hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee-----------------------eeee
Confidence 445557789999999999999998888875544 499999654331 1223
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEee--eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
...+ ..|.+++|++...|.+|+.. +.+..+.+||.+.+......+.. ...++
T Consensus 151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s--------ne~v~------ 204 (626)
T KOG2106|consen 151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS--------NEVVF------ 204 (626)
T ss_pred cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec--------cceEE------
Confidence 3333 67999999988777777775 66788999999876532221111 12233
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
...|.|.+..+ +.....+.+.+|+ . ++....+..-.+.+.....|.|++|.++|+. ++| +
T Consensus 205 -~a~FHPtd~nl------------iit~Gk~H~~Fw~--~---~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS 265 (626)
T KOG2106|consen 205 -LATFHPTDPNL------------IITCGKGHLYFWT--L---RGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDS 265 (626)
T ss_pred -EEEeccCCCcE------------EEEeCCceEEEEE--c---cCCceEEEeeccccccceEEEEEEEcCCCCE-EeecC
Confidence 67888988888 7888889999998 2 2222223333333334477999999999975 567 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc-------c---
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-------S--- 323 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------~--- 323 (515)
+|.|.||+..+.+... ....|.+.|.+++...+| .|++|+.|+.|..||-.-.+..... +
T Consensus 266 ~G~i~Iw~~~~~~~~k--------~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISK--------QVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CceEEEEeCCCceEEe--------EeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEE
Confidence 9999999987554332 223799999999999998 5666999999999993222211000 0
Q ss_pred --------------ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 324 --------------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 324 --------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
..+++.-......+..+|......++.+|+...+++++ |+.+++|+ . .++.-+......
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~--- 409 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDP--- 409 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCc---
Confidence 01111111112233466888899999999888888865 59999999 3 454444332222
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.|+|.| .||.|+..|...+.|.++. .+ .++....++++.+.++|+|.+||.|+.|+.|.+
T Consensus 410 -------------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 410 -------------AECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred -------------eeEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 2389999999 9999999999999999874 33 344444899999999999999999999999999
Q ss_pred ----ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 469 ----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 469 ----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
..+.++. ..... +.+.|+++.||+|+++|.+-+.+--++|
T Consensus 474 y~Vs~~g~~y~---r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 474 YRVSANGRKYS---RVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred EEECCCCcEEE---Eeeee--cCceeEEeeecCCCceEEeccCceEEEE
Confidence 2222222 12222 2389999999999999998887765554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=226.80 Aligned_cols=449 Identities=14% Similarity=0.113 Sum_probs=291.7
Q ss_pred ccccceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccc---cccccCCccceeeeeccc-CCC---cc
Q 010206 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMM---DYSMSRHPEFRYKTEFQS-HEP---EF 103 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-h~~---~~ 103 (515)
.|..+++|++||++|+|+|+|- ....++||++.....+ ..+.++ ...++|+|..+++..... |+- .+
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV----AEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVV----AEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccch----hhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 5778999999999999999986 5667999999876533 222222 236789999988876543 321 12
Q ss_pred ccc-----ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEE-Eeecc----------CCcccCCCCCCc
Q 010206 104 DYL-----KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWN----------VHPEKAAGNGPI 167 (515)
Q Consensus 104 ~~~-----~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~----------~~~~~~~~~~~v 167 (515)
+|- .+-.+...|.+++| ++++.|+++++. ..|++|.++.++..+ ...+. .......+.+.-
T Consensus 152 dWr~N~~~asnkiss~Vsav~f--sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~g 228 (1080)
T KOG1408|consen 152 DWRVNSSGASNKISSVVSAVAF--SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVG 228 (1080)
T ss_pred hhhhcccccccccceeEEEEEE--ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCc
Confidence 221 22256788999999 788989988775 789999998765111 10000 000000000100
Q ss_pred cCCCCcCCCceeecCCCcccc-----------------ccccCCCCCCCCCCCcccEEeeeeeecccccccc--------
Q 010206 168 FGSHVSAIPKSYMANGGCGER-----------------NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLV-------- 222 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~-----------------~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------- 222 (515)
...-+..++...|..... ..++.+.++++.|+.+|.|++++ -.+.+-...
T Consensus 229 ---icAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFn--p~tL~y~~Tlpr~halg 303 (1080)
T KOG1408|consen 229 ---ICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFN--PETLDYAGTLPRSHALG 303 (1080)
T ss_pred ---ccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecC--cchhhhccccccccccc
Confidence 000113344444433321 13455778999999999999987 333221100
Q ss_pred ------cceeeeee---ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe
Q 010206 223 ------AGCRRIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 292 (515)
Q Consensus 223 ------~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 292 (515)
.++.+.+. .+.-...-++.|++....|.+. .|..+++||++..++.-+. ..+--|...|+++.--
T Consensus 304 ~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~ 378 (1080)
T KOG1408|consen 304 SDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENL 378 (1080)
T ss_pred cchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccc
Confidence 00111110 1111223467789988898888 8999999999977655332 2445577777777654
Q ss_pred cCC----------CcEEEEEecCCeEEEEecCccc---ccccccceeeeccC---CC---------------cccccccc
Q 010206 293 PTH----------CNMLAYSSSKGSIRLIDMRQSA---LCDTHSKLFEEQEA---PG---------------TRSFFTEI 341 (515)
Q Consensus 293 p~~----------~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~---~~---------------~~~~~~~~ 341 (515)
|-+ +..|++++.|++||+||+..+. ...+++..-+.... .. ......+.
T Consensus 379 p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~ 458 (1080)
T KOG1408|consen 379 PCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDS 458 (1080)
T ss_pred cccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCc
Confidence 410 1268999999999999997632 11111110000000 00 00011123
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC---CCCEEEEe
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~ 417 (515)
...+++++.||+|++|++|+. |.++||++.. ...+..+..|+.. |.++.||. ..++||++
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesE---------------ilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESE---------------ILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccce---------------eEEEeecCchhhhHhhhhc
Confidence 357999999999999999998 9999999985 7777788888865 45788875 35789999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC--CeeEeecCCCeEEEecCCCCCcc--ccCCccccccCCeeEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR--PSRPLGSLSGVVRRVKGADNSAL--DANGNAFDFSMKLLHL 493 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~l~~~~~~~~~--~~~~~~~~~~~~i~~~ 493 (515)
+.|..|++||+...-.+++++.+|...|+++.|...| ..+++++.|+.+.+....+.... ........-+..+++|
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 9999999999998767779999999999999998777 67899999999888222211100 0111222235689999
Q ss_pred EEcCCCCEEEEEc-CCcEEEEe
Q 010206 494 AWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~-~~~~~i~~ 514 (515)
+..|..+++++++ +.++.||.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred eeCCCcceEEEEecccceEEEe
Confidence 9999999999887 45688885
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=231.89 Aligned_cols=301 Identities=14% Similarity=0.175 Sum_probs=208.6
Q ss_pred chhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc
Q 010206 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (515)
+|+.+||.... .-.|-..|.....++|+..+++++.+.....|+...+... ..+...+. + +. ....+.
T Consensus 5 k~rh~~g~~~k--~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~-~---~~--~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPAR--PDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK-L---AS--NPPILL 72 (493)
T ss_pred cccccccccCC--cccceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc-C---CC--CCceEe
Confidence 56667775444 3345677888888889877888888888889987654321 11111110 0 00 012356
Q ss_pred cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 777 88999999763 4569999999999999999764311000
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCC
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDL 255 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~ 255 (515)
..+... +.+|...|.+++|+|++ .+|+++ .|+
T Consensus 115 ---------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 115 ---------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ---------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 000111 46899999999999985 688887 899
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
+|++||+++++... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++... .
T Consensus 149 tVrIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~----t---------- 205 (493)
T PTZ00421 149 VVNVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS----S---------- 205 (493)
T ss_pred EEEEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE----E----------
Confidence 99999998765432 456789999999999998 899999999999999999876432 2
Q ss_pred ccccccccc-eeEEEEccCCCEEEEEc-----CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 336 SFFTEIIAS-ISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 336 ~~~~~~~~~-i~~~~~s~~~~~l~s~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
+.+|.+. ...+.|.+++..+++++ ++.|++||+++...++.....+... .+....|++
T Consensus 206 --l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~ 269 (493)
T PTZ00421 206 --VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDE 269 (493)
T ss_pred --EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcC
Confidence 2334333 44677888877777632 4899999998644455444322211 123567899
Q ss_pred CCCEEEEec-CCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCC
Q 010206 410 DGGRVATGS-YSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSR 454 (515)
Q Consensus 410 ~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 454 (515)
++++|++++ .|+.|++||+.++. ....++ .+..+...+++.|..
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNER-LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCc-eEEEeeccCCCCCcceEecccc
Confidence 999999887 59999999999874 333333 345677888887753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=216.81 Aligned_cols=281 Identities=16% Similarity=0.274 Sum_probs=218.3
Q ss_pred ccccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.....+.|++++|||... -+|+.+ .-++.||+..+.... ..+....
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-----------------------k~~srFk--------- 68 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-----------------------KTFSRFK--------- 68 (487)
T ss_pred cccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-----------------------hhHHhhc---------
Confidence 345568999999999544 355554 347999998765432 1122222
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.| ..||.+|++|...|.|++||+.+..+..
T Consensus 69 ---~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iLR--------------------------------------- 104 (487)
T KOG0310|consen 69 ---DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRVILR--------------------------------------- 104 (487)
T ss_pred ---cceeEEEe--ecCCeEEEccCCcCcEEEeccccHHHHH---------------------------------------
Confidence 66999999 6789899999999999999955421100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|+.+|..+.|+|++..++ +| +|+.+++||+.+...
T Consensus 105 --------------------------------------~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 105 --------------------------------------Q-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred --------------------------------------H-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 0 468999999999999766555 56 799999999987663
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|++.|+|.+|+|..+.++++|+.||.|++||++.... .+.. -.|..+|..
T Consensus 146 ~--------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~e-------------lnhg~pVe~ 201 (487)
T KOG0310|consen 146 Q--------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVE-------------LNHGCPVES 201 (487)
T ss_pred E--------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEE-------------ecCCCceee
Confidence 2 166889999999999998768999999999999999988631 1111 235578999
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+.+-|.|..+++++...+++||+.++++.+..+..|... |+|+++..++..|++|+-|+.|++||
T Consensus 202 vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 202 VLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred EEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEE
Confidence 999999999999988999999999877777777667655 77999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+. +.+..+ .-..||-+++.+|+++.++.|-.+|.+.+
T Consensus 267 ~t~~-Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 267 TTNY-KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccce-EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence 7654 333333 23568888999999999999988888877
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=197.18 Aligned_cols=239 Identities=18% Similarity=0.237 Sum_probs=188.6
Q ss_pred cCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 234 DYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 234 ~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
...+..++|++.. +.++++ .||++++||+.....++ ..++.|...|.++.|++.....+++++.|++|++|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi-------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPI-------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcch-------hHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 3667899999863 344555 89999999976555443 26788999999999999876888999999999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+....+.+ .++.+|...|...+|+| .+.++++++ |+++++||++.+++.+. +..|...
T Consensus 133 ~~~r~~Sv----------------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~E--- 192 (311)
T KOG0277|consen 133 DPNRPNSV----------------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSE--- 192 (311)
T ss_pred cCCCCcce----------------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccce---
Confidence 98765442 23677889999999999 567777765 59999999998776665 7777643
Q ss_pred ccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEE
Q 010206 390 LCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVR 467 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~ 467 (515)
+.++.|+. +.+.|+||+.|+.|+.||+++-...+.++.+|.-.|+.+.++|.. ..|||++-|-++|
T Consensus 193 ------------il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 193 ------------ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred ------------eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 55899987 566789999999999999998877778999999999999999975 4789999999999
Q ss_pred EecCCCCCccc-cCCccccccCCeeEEEEcCC-CCEEEEEc-CCcEEEEe
Q 010206 468 RVKGADNSALD-ANGNAFDFSMKLLHLAWHPS-ENSIACAA-SNSLYMYY 514 (515)
Q Consensus 468 l~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~-~~~la~~~-~~~~~i~~ 514 (515)
+ +++.... .....--|+..+..+.||+- ..++|..+ +..++||+
T Consensus 261 i---w~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 261 I---WDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred e---cccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9 4333111 11112247788999999985 66788666 66799997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=211.83 Aligned_cols=282 Identities=13% Similarity=0.157 Sum_probs=213.9
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|...|.-+.| +++|++||+++.|.+..+|++......
T Consensus 223 htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------------- 259 (519)
T KOG0293|consen 223 HTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------------- 259 (519)
T ss_pred CCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcce-----------------------------------------
Confidence 3478999999 677899999999999999987643211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
++ .++ +.+|..+|..+.|+||.++|+++ .|..+.+||+.++....
T Consensus 260 -----------------kl----------------~~t-lvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 260 -----------------KL----------------KKT-LVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred -----------------ee----------------eee-eecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 10 111 46899999999999999999998 68889999999887553
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.. -.++...+.+++|.||| ..+++|+.|+.|..||+.... ...|++.+. ..|.+++
T Consensus 306 ~y-------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dla 361 (519)
T KOG0293|consen 306 LY-------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLA 361 (519)
T ss_pred hc-------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEE
Confidence 21 12245789999999999 899999999999999986543 233444332 3599999
Q ss_pred EccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++||+++++ +.|..|++++... .........+. ++++.++|.|++++.+.=.+..+++||+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~----------------~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQ----------------PITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred EcCCCcEEEEEecccceeeechhh-hhhhccccccC----------------ceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 9999999887 4569999999874 33332332222 1569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCcee--eEEEC-CCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC-EEEE
Q 010206 429 SEGSAESTTLEASKNPMR--RQVQT-PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIAC 504 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~--~~~~~-~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~ 504 (515)
+.. .++..+.+|...-. .-+|. .+..+++|||+|+.|++ |......+...+.+|...|++++|+|..+ ++|+
T Consensus 425 ~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 425 EEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred chh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 954 55577788865422 33443 45589999999999999 33333344556778999999999999865 5778
Q ss_pred EcCCc-EEEEe
Q 010206 505 AASNS-LYMYY 514 (515)
Q Consensus 505 ~~~~~-~~i~~ 514 (515)
|++|| +.||.
T Consensus 501 asDDgtIRIWg 511 (519)
T KOG0293|consen 501 ASDDGTIRIWG 511 (519)
T ss_pred cCCCCeEEEec
Confidence 87766 88885
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=215.78 Aligned_cols=421 Identities=15% Similarity=0.210 Sum_probs=266.9
Q ss_pred cccccccceEEEEECCCCC---eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 30 EEVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~---~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
...+|..+|+|+.|-|+.+ ++++|+.||.|.+|.+..... ..+..+++|.
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~---------------------~~i~~~~g~~------ 101 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL---------------------IKIYTIQGHC------ 101 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe---------------------EEEEeecCcc------
Confidence 3568999999999999887 899999999999999974332 2455677776
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc---------------cCCCCCC-cc--
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE---------------KAAGNGP-IF-- 168 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------~~~~~~~-v~-- 168 (515)
+.++++.. ........+.|+++.+||.+..+........+... ..++.|. ..
T Consensus 102 --------~~~~cv~a--~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 102 --------KECVCVVA--RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred --------eeEEEEEe--eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 44555521 11122223688999999986555221111111100 0000000 00
Q ss_pred ---CCCC-cCC-------------CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc----------
Q 010206 169 ---GSHV-SAI-------------PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL---------- 221 (515)
Q Consensus 169 ---~~~~-~~~-------------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~---------- 221 (515)
+... .+. +++|..-+. ..-++++++.|..|+||.|.+.+.+...
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~---------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~ 242 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGG---------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLS 242 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCC---------CcEEEEecCCceEEEEEEEEecCCcccccccccccccc
Confidence 0000 000 111111111 1236689999999999997555522200
Q ss_pred ---cccee---------eeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEE
Q 010206 222 ---VAGCR---------RIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 288 (515)
Q Consensus 222 ---~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 288 (515)
..... ...+.||...|.++.|+|.+..|+++ .|.++.+|...+..-... ..++...+.+.......
T Consensus 243 ~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g 321 (764)
T KOG1063|consen 243 NLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWG 321 (764)
T ss_pred CCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceee
Confidence 00000 12235999999999999999777777 899999998875432211 01111233344566889
Q ss_pred EEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEE
Q 010206 289 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKL 367 (515)
Q Consensus 289 i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~i 367 (515)
..|+|++ +.+++-+..|..++|-...... +. ....+.||...|.+++|+|.|.+|++.+ |.+-|+
T Consensus 322 ~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~-------w~------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 322 GLWSPNS-NVIIAHGRTGGFHLWKTKDKTF-------WT------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred EEEcCCC-CEEEEecccCcEEEEeccCccc-------ee------eccccccccccceeeeecCCCCEEEEeccccceee
Confidence 9999998 8999999999999998333211 11 1234788999999999999999999854 566666
Q ss_pred EEee----------C------------------------CCCCeeeEeeeccc-----------------------cc--
Q 010206 368 WDIN----------M------------------------DSGPVATFQVHEHL-----------------------RP-- 388 (515)
Q Consensus 368 wd~~----------~------------------------~~~~~~~~~~~~~~-----------------------~~-- 388 (515)
|-.- . ..+.++.|..+... ++
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 5321 0 00111111110000 00
Q ss_pred -------------------------------------------------cccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 389 -------------------------------------------------KLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 389 -------------------------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
...++| +.-++|++++.+|+|+++||++.
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY--GHGyEv~~l~~s~~gnliASaCK 545 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY--GHGYEVYALAISPTGNLIASACK 545 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc--cCceeEEEEEecCCCCEEeehhh
Confidence 000011 11247899999999999999875
Q ss_pred C-----CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCc-cccccCCeeEE
Q 010206 420 S-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHL 493 (515)
Q Consensus 420 d-----g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~-~~~~~~~i~~~ 493 (515)
. ..|++|+..+-. ..+.+++|.-.|+.++|+||+++|++.|.|+++.+++-.+....++... .-.|..-|.++
T Consensus 546 S~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc 624 (764)
T KOG1063|consen 546 SSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC 624 (764)
T ss_pred hCCccceEEEEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc
Confidence 4 368999998763 4468999999999999999999999999999999943333222222222 23588899999
Q ss_pred EEcCCCCEEEEEcCC-cEEEEe
Q 010206 494 AWHPSENSIACAASN-SLYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~~~-~~~i~~ 514 (515)
+|+||+.++|+++-| .+.+|.
T Consensus 625 sW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 625 SWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccCcccceeEEecCCceEEEEe
Confidence 999999999999955 577774
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=217.24 Aligned_cols=283 Identities=18% Similarity=0.238 Sum_probs=223.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.|...|..+.|-++...|++|+.|..|++|++...+.. +..++.+..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------------~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------------LISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------------hhhhhhccC----------
Confidence 3468999999999999889999999999999998766522 334556655
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|+.+.| ..++.+++++++|+.+++|++.+.+....
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~T--------------------------------------- 256 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHT--------------------------------------- 256 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhhh---------------------------------------
Confidence 77999999 77888999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|+++.|......+++| .|.+|++||+.......
T Consensus 257 ---------------------------------------LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 257 ---------------------------------------LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ---------------------------------------hcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence 46899999999998877778888 89999999998755443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.++ ....+..|+.++ ..+++|..|++|++||.+...... ..+. .+.|+++.
T Consensus 298 t~l---------~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~----sv~~-------------gg~vtSl~ 348 (459)
T KOG0288|consen 298 TVL---------PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTR----SVPL-------------GGRVTSLD 348 (459)
T ss_pred ccc---------ccccccceEecc---eeeeecccccceEEEeccCCceee----Eeec-------------CcceeeEe
Confidence 321 234455666652 579999999999999999876532 1111 15799999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.+++|..|.+++. .++.+.|+++ .....++...... +-.+.+.+.|||++.|+++||.||.|+||++
T Consensus 349 ls~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 349 LSMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred eccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 9999999988764 8999999996 6666666654322 1123458999999999999999999999999
Q ss_pred CCCCcceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+++ +...+..... .|.++.|.|.|..|++++.++.+++
T Consensus 417 ~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 417 FTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred cCce-EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 9884 4455554444 5999999999999999999998887
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=234.02 Aligned_cols=316 Identities=16% Similarity=0.226 Sum_probs=233.3
Q ss_pred ccccceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
++...|.+++.+|||..+|||+ .||.++||+...--.. ....... -.+.+.+...|.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~------~~~~~~~-----l~k~l~~m~~h~---------- 69 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE------KEEKNEN-----LPKHLCTMDDHD---------- 69 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccch------hhhhhcc-----cchhheeecccc----------
Confidence 3456799999999999999999 8999999996532110 0000000 012334455666
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|+|+.| ++||++||+|+.|+.|.+|...... .+.++
T Consensus 70 --~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~----------------~~~~f---------------------- 107 (942)
T KOG0973|consen 70 --GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIG----------------SGTVF---------------------- 107 (942)
T ss_pred --CceeEEEE--CCCCCeEeeccCcceEEEeeecccC----------------Ccccc----------------------
Confidence 89999999 6789999999999999999876410 01111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
-+++....+.-|. +... +.+|...|..++|+|++.+|+++ -|++|.+|+..+.+..
T Consensus 108 --------gs~g~~~~vE~wk-------------~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~- 164 (942)
T KOG0973|consen 108 --------GSTGGAKNVESWK-------------VVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL- 164 (942)
T ss_pred --------cccccccccceee-------------EEEE-EecCCCccceeccCCCccEEEEecccceEEEEccccceee-
Confidence 1112222333333 2223 47899999999999999999998 7999999999987433
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+........+.|+... ...-+..+.
T Consensus 165 ~-------vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~----------~~T~f~RlS 226 (942)
T KOG0973|consen 165 K-------VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP----------LTTFFLRLS 226 (942)
T ss_pred e-------eeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC----------Ccceeeecc
Confidence 2 678999999999999999 9999999999999999766444322222332211 124578899
Q ss_pred EccCCCEEEEEc-----CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-------------C
Q 010206 350 FARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------G 411 (515)
Q Consensus 350 ~s~~~~~l~s~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~ 411 (515)
|||||++|++.. ...+.|.+-.+ -+.-..+.+|... +..+.|+|. .
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p---------------~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAP---------------VEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCc---------------eEEEEeChHHhccccccCCccCC
Confidence 999999999842 26788888764 6667788888876 347777762 1
Q ss_pred C----EEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 G----RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~----~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ .+|+|+.|++|.||......++....+-....|..+.|+|||..|..+|.||+|.+
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 1 57899999999999987766665566667889999999999999999999999998
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=208.52 Aligned_cols=281 Identities=17% Similarity=0.261 Sum_probs=229.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...++++...|..+.+++|+.|..+.++|...++ .+..+.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4678999998887899999999999999987665 457899998 88
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|+.+.|+|.. ...++++.|..|++|.........
T Consensus 264 i~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~~-------------------------------------------- 297 (506)
T KOG0289|consen 264 ITSVKFHKDL--DTVITASADEIIRVWSVPLSSEPT-------------------------------------------- 297 (506)
T ss_pred EEEEEeccch--hheeecCCcceEEeeccccccCcc--------------------------------------------
Confidence 9999996654 489999999999999876532100
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
....|..+|+.+..+|.|.+|+++ .|++..+.|++++.......
T Consensus 298 ----------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs- 342 (506)
T KOG0289|consen 298 ----------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS- 342 (506)
T ss_pred ----------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe-
Confidence 035788999999999999999999 89999999999887654321
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
-+...-.+++.+|+||| .+|.+|..|+.+++||+..+....+ |.+|+++|..++|+.+
T Consensus 343 -----~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~----------------Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 343 -----DETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAK----------------FPGHTGPVKAISFSEN 400 (506)
T ss_pred -----eccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccccc----------------CCCCCCceeEEEeccC
Confidence 11223458999999999 9999999999999999988764332 7889999999999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|-+|+++.+ +.|++||++. .+..+++...... ++.++.|.+.|.+|+.++.|=+|++++-.+..
T Consensus 401 GY~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 401 GYWLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred ceEEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 999999765 8899999997 6777777655432 24589999999999999888777777755443
Q ss_pred cc-eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 433 AE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 433 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ...+..|....+.+.|....++++++|.|..+++
T Consensus 466 W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 466 WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 33 3567778888999999999999999999999887
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=196.70 Aligned_cols=280 Identities=17% Similarity=0.233 Sum_probs=213.6
Q ss_pred ccccceEEEEECC-CCCeEEeecCCCeEEEEEcccC-cccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDT-RDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 33 ~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.+.|.+|+||| ...++++|+.||+||+|+++.. ... | .....|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~-----------------~-----ka~~~~~---------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV-----------------P-----KAQQSHD---------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCccc-----------------c-----hhhhccC----------
Confidence 4568999999999 5667779999999999999864 221 0 2234455
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.+++| +.+|..+++|+.|+.+++||+.+++...
T Consensus 73 --~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~---------------------------------------- 108 (347)
T KOG0647|consen 73 --GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQ---------------------------------------- 108 (347)
T ss_pred --CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeee----------------------------------------
Confidence 89999999 6788899999999999999999886332
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...|..+|.++.|-+... .|++| .|.+|+.||.+...+
T Consensus 109 ---------------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 109 ---------------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred ---------------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 246778888888866544 88999 799999999997665
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
...+ ...+.++++..-. .+++.+..++.|.+|+++++....+... ....-.++|
T Consensus 150 v~t~---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~--------------SpLk~Q~R~ 203 (347)
T KOG0647|consen 150 VATL---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIE--------------SPLKWQTRC 203 (347)
T ss_pred eeee---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhc--------------CcccceeeE
Confidence 5332 1356677766543 4788899999999999988653221111 111235899
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
++..+|....+.|+- |++.|..+..+ .+.-.+|+.|..... . ++.++.|.+++|+|.-..|+|++.||++.+
T Consensus 204 va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~F 277 (347)
T KOG0647|consen 204 VACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSF 277 (347)
T ss_pred EEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEE
Confidence 999998887788875 99999988751 245567788875432 1 134677889999999999999999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECCCCCeeEee
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
||-... ..+.+.+.|..+|++..|..+|.++|.+
T Consensus 278 WDkdar-~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 278 WDKDAR-TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecchhh-hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 998766 4447778899999999999999988665
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-28 Score=209.20 Aligned_cols=299 Identities=13% Similarity=0.194 Sum_probs=224.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccC-cccccccccCCccceeeeec-ccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD-LEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~ 108 (515)
...|..+|+|++++||+++..+++.+|+|.-|++.+++...-+... ...+. .+.....- ..|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-------~~~~~k~~r~~h~-------- 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-------HGNPLKESRKGHV-------- 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-------ccCCCCccccccc--------
Confidence 3579999999999999999999999999999999988754111110 00000 00000001 1444
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|.+++. ++|+++|++|+.|..|.||+.++.+..+.
T Consensus 203 ----keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~------------------------------------- 239 (479)
T KOG0299|consen 203 ----KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV------------------------------------- 239 (479)
T ss_pred ----ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-------------------------------------
Confidence 67899999 67889999999999999999988652221
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+.+|.+.|.+++|-.....|.++ .|++|++|+++....
T Consensus 240 -----------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 240 -----------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred -----------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 36899999999998877777776 899999999985543
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. .++.+|++.|.+|....-+ +.+-+|+.|+++++|++.... +.++.+|.+.+.|
T Consensus 279 v--------etlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-----------------qlifrg~~~sidc 332 (479)
T KOG0299|consen 279 V--------ETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-----------------QLIFRGGEGSIDC 332 (479)
T ss_pred H--------HHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-----------------eeeeeCCCCCeee
Confidence 3 2678999999999988877 788888899999999995432 1235666788999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|-. ...+++|++ |.|.+|++.+ .+++.+.....+..+.......+ +.|++++..|...++++|+.+|.|++|
T Consensus 333 v~~In-~~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 333 VAFIN-DEHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred EEEec-ccceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEEE
Confidence 99984 467888877 9999999997 88888876555443322111111 468899999999999999999999999
Q ss_pred ecCCCCc---ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 427 GCSEGSA---ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 427 ~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
.+..+-. ++..+. -...|++++|+++|+.+++|
T Consensus 408 ~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 9998732 223333 45779999999999977666
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-28 Score=219.55 Aligned_cols=368 Identities=15% Similarity=0.196 Sum_probs=241.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
..++.|++...+|..-..|..++|||+.+-...+++ ..+-.|. ..|..
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~--------------------~s~lyHS------------~ciW~ 374 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC--------------------SSMLYHS------------ACIWD 374 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccce--------------------eeeeecc------------ceeee
Confidence 357889998999999999999999999877655333 1223343 34444
Q ss_pred EEEee----c-----CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 118 IRWCQ----S-----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 118 l~~~~----~-----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.-.| + -+...|.+++.|++|++|++..+....+..-+.-. .
T Consensus 375 Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils----------------------~------- 425 (1080)
T KOG1408|consen 375 VENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS----------------------A------- 425 (1080)
T ss_pred eccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch----------------------h-------
Confidence 44333 0 01246999999999999999874322222211100 0
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++.-....|+...+. .+.+... +.......-+....+++++.+|+++.|++| ..|++++|++...+.
T Consensus 426 -------~l~ki~y~d~~~q~~----~d~~~~~-fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~ 493 (1080)
T KOG1408|consen 426 -------NLSKIPYEDSTQQIM----HDASAGI-FDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY 493 (1080)
T ss_pred -------hhhcCccccCchhhh----hhccCCc-ccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh
Confidence 000001111111110 0000000 000000012344679999999999999999 699999999986654
Q ss_pred ccceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.. .++.|...|.|+.|+.- +.++|++++.|+.|++||+...... ...+.+|++.|
T Consensus 494 ~~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------~qtld~HSssI 550 (1080)
T KOG1408|consen 494 TC--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------VQTLDGHSSSI 550 (1080)
T ss_pred hh--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---------------hhhhcccccce
Confidence 43 66889999999999852 2368999999999999998664332 23477899999
Q ss_pred eEEEEccCC--CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 346 SDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
+++.|.-.| ..+++++......|+..........+..|.....+ . .++.++..|..+++++++.|..|
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k-t---------TlYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK-T---------TLYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc-c---------eEEEeeeCCCcceEEEEecccce
Confidence 999998766 56666543233445543211112222222222111 1 13489999999999999999999
Q ss_pred EEEecCCCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 424 RVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+||++++++ ....+++ |....-.+...|+|-|+++...|+++.+++-. ..+...+..+|...|+.+.|.+|-+
T Consensus 621 rif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~---sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 621 RIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV---SGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EEEeccccc-eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec---cchhhhhhcCcchheeeeeecccch
Confidence 999999984 4466764 44556678899999999999999999992211 1123335567999999999999999
Q ss_pred EEEEE-cCCcEEEEeC
Q 010206 501 SIACA-ASNSLYMYYA 515 (515)
Q Consensus 501 ~la~~-~~~~~~i~~~ 515 (515)
.|.+. ++..|++|..
T Consensus 697 HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWKL 712 (1080)
T ss_pred hheeecCCceEEEEEC
Confidence 88855 5666999963
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=202.09 Aligned_cols=258 Identities=17% Similarity=0.205 Sum_probs=191.3
Q ss_pred ccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
.+|.++|.+++|-- ....|+++ .|.++++|..+.+....... ....+|...|-++...+++ ..+++|+.|.
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~ 215 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDT 215 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccc
Confidence 57888888777632 33357777 89999999998766543322 1335899999999999999 9999999999
Q ss_pred eEEEEecCccccc--cc-------ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC
Q 010206 307 SIRLIDMRQSALC--DT-------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP 376 (515)
Q Consensus 307 ~i~~wd~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~ 376 (515)
.|++|+..+...- .. ..+.-+......+...+.+|..+|.++.|++ ...+++++. .+|+.||+.+ ++.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccc
Confidence 9999994332110 00 0000111112234557899999999999997 667777774 9999999998 777
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC--cceeeeccCCCceeeEEECCCC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
..++..... .+++..+|..++|++|+.|..+++||.+++. ...+++.+|.+-|.++.++|..
T Consensus 294 ~~~~~~~ks----------------l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 294 KSTLTTNKS----------------LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred eeeeecCcc----------------eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 766665443 2489999999999999999999999998764 3348899999999999999987
Q ss_pred Ce-eEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 455 PS-RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 455 ~~-l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+ |++|+.|+++++++...... ....+..|...|.++.|+. +..|++|+ ++.+.||.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence 65 79999999999944333221 2224456899999999965 56677666 66688875
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=181.51 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=224.4
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+..+..|.+++|+|.|.+.|+|+...+.+|-....-... .+....+..|.......-..|.
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~--------r~~hea~~~pp~v~~kr~khhk----------- 89 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL--------RHAHEAAKQPPSVLCKRNKHHK----------- 89 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCc--------ccccccccCCCeEEeeeccccC-----------
Confidence 455678999999999999999999999888765432110 0111122223222222233444
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|.|.+| ++.|+++++|++|++|++..+........ |.
T Consensus 90 -gsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~~~-------------------------------g~------- 128 (350)
T KOG0641|consen 90 -GSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCNAT-------------------------------GH------- 128 (350)
T ss_pred -ccEEEEEe--cCccCeEEecCCCceEEEEeccccccccc-------------------------------Cc-------
Confidence 99999999 56788999999999999876654321110 00
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----CCEEEEe--CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~--~d~~i~iwd~~~~ 265 (515)
+ .. +.-|.+.|..++|..+ +.+|+++ .|..|++-|-.++
T Consensus 129 --------------------------d--------le-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 129 --------------------------D--------LE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred --------------------------c--------ee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence 0 00 2467788999999543 5677776 5888888888766
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+.+|.+-|.++ ++-++ -+|++|+.|.+|++||++-...+...-..+..... -++.|
T Consensus 174 ~~~~--------a~sghtghilal-yswn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl---------essav 234 (350)
T KOG0641|consen 174 QGFH--------ALSGHTGHILAL-YSWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL---------ESSAV 234 (350)
T ss_pred Ccce--------eecCCcccEEEE-EEecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc---------cccee
Confidence 6443 668899998877 34455 79999999999999999876554322222221110 12679
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++..|.|++|++|.. ....+||++- +++++.+..|... |.++.|||...||.+++.|..|+
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsad---------------ir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSAD---------------IRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCccc---------------eeEEEeCCCceEEEEecccceEE
Confidence 99999999999999964 8999999994 8999999888765 45999999999999999999999
Q ss_pred EEecCCCC---cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGS---AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+-|+...- ........|.+.+-.+.|+|..-.+++.+.|+++.+
T Consensus 299 ltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 299 LTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred EeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 99997431 112455689999999999999999999999999988
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=210.38 Aligned_cols=298 Identities=15% Similarity=0.219 Sum_probs=208.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++++ .+.|.+|++|+.|.+|++||+......... +
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-f-------------------------------------- 206 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRS-F-------------------------------------- 206 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccchh-h--------------------------------------
Confidence 77999999 777889999999999999998864311100 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.........|+++.|++.+..|++. .....+|+|-.. ....+.
T Consensus 207 ----------------------------------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG-~~~~e~ 251 (641)
T KOG0772|consen 207 ----------------------------------RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG-FEIVEF 251 (641)
T ss_pred ----------------------------------hccCcccccccceeeecCCCCeEEEEecCcceeEEccCC-ceeeee
Confidence 00012334678899999998888876 778888888653 222221
Q ss_pred -------ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 272 -------VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 272 -------~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.++ ..-.+|...++|.+|+|.....|++++.||++|+||+.+.+.. ..++.... ..+..-+
T Consensus 252 ~KGDQYI~Dm--~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~-------~~g~Rv~ 319 (641)
T KOG0772|consen 252 SKGDQYIRDM--YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKP-------AGGKRVP 319 (641)
T ss_pred eccchhhhhh--hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeecc-------CCCcccC
Confidence 111 2457899999999999998789999999999999999876532 22332211 1233457
Q ss_pred eeEEEEccCCCEEEEEc-CCeEEEEEeeCCC-CCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 345 ISDIKFARNGRHILSRD-YMTLKLWDINMDS-GPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
++.++|+|||+++|+|. ||.|.+|+...-. .+. ..-..|... .+|+++.||+||++|++-+.|+
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g-------------~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG-------------QDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC-------------CceeEEEeccccchhhhccCCC
Confidence 99999999999999976 4999999975311 121 222333321 2367999999999999999999
Q ss_pred cEEEEecCCCCcceeeeccC--CCceeeEEECCCCCeeEeecCC------CeEEEecCCCCCccccCCccccccCCeeEE
Q 010206 422 LFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS------GVVRRVKGADNSALDANGNAFDFSMKLLHL 493 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d------~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~ 493 (515)
++++||++..++.+.+..+- ..+-+.++|+|+.+++++|..- |.+.+++...+. ...+..-....|..+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRC 463 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEE
Confidence 99999999876655554433 3566789999999999998652 445553222211 111111126789999
Q ss_pred EEcCCCCEEEEEcCCc-EEEEe
Q 010206 494 AWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 494 ~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.|+|.-+.|.+++.|| +.+|+
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eecchhhheeeecCCCceEEEE
Confidence 9999999888887665 66654
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=216.96 Aligned_cols=240 Identities=17% Similarity=0.344 Sum_probs=200.3
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~ 113 (515)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.. ..+.+ |. .
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-----------------------~~~~~~h~------------~ 261 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-----------------------RTLRGSHA------------S 261 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc-----------------------ccccCCcC------------c
Confidence 799999999999999999999999999998876643 33445 66 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|-+++|. +..+.+|+.|+.|..+|++..+....
T Consensus 262 rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~------------------------------------------ 295 (484)
T KOG0305|consen 262 RVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS------------------------------------------ 295 (484)
T ss_pred eeEEEecc----CceEEEecCCCcEEEEEEecchhhhh------------------------------------------
Confidence 89999994 44888999999999999987541000
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
.+.+|...|..+.|++|+.+|++| .|+.+.|||.......+
T Consensus 296 -----------------------------------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~--- 337 (484)
T KOG0305|consen 296 -----------------------------------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF--- 337 (484)
T ss_pred -----------------------------------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE---
Confidence 036899999999999999999998 89999999996555443
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...|..++|+|-...+||+|+. |+.|++||..++..+.. .+. .+.|..+.|
T Consensus 338 -----~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~----vdt-------------gsQVcsL~W 395 (484)
T KOG0305|consen 338 -----TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS----VDT-------------GSQVCSLIW 395 (484)
T ss_pred -----EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc----ccc-------------CCceeeEEE
Confidence 567899999999999987789998764 99999999998876432 111 157999999
Q ss_pred ccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 351 ARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
++..+.|+++. ++.|.||+..+ .+++..+.+|... |..++++|||..+++|+.|.++++|+
T Consensus 396 sk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 396 SKKYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cCCCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEecc
Confidence 99988888742 38999999987 8888999999866 55899999999999999999999999
Q ss_pred cCCC
Q 010206 428 CSEG 431 (515)
Q Consensus 428 ~~~~ 431 (515)
+-..
T Consensus 460 ~f~~ 463 (484)
T KOG0305|consen 460 LFDE 463 (484)
T ss_pred ccCC
Confidence 8754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=190.55 Aligned_cols=288 Identities=15% Similarity=0.182 Sum_probs=214.4
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.+++|+ .+++.|.| +.+|.+|++++.|.+..+|--.+|+..-.
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlGt----------------------- 47 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLGT----------------------- 47 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceeee-----------------------
Confidence 367888 89999999 56788999999999999997666542211
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
..+|.+.|+|+..+.+.+.+++| .
T Consensus 48 -------------------------------------------------------y~GHtGavW~~Did~~s~~liTGSA 72 (327)
T KOG0643|consen 48 -------------------------------------------------------YDGHTGAVWCCDIDWDSKHLITGSA 72 (327)
T ss_pred -------------------------------------------------------ecCCCceEEEEEecCCcceeeeccc
Confidence 36899999999999999999999 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-----CCeEEEEecCcccccccccceeee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
|.++++||++++++.... ....+|..+.|+++| ++++.... .+.|.++|++.......
T Consensus 73 D~t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~------- 135 (327)
T KOG0643|consen 73 DQTAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID------- 135 (327)
T ss_pred cceeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc-------
Confidence 999999999999876532 246789999999999 66665544 46799999985431100
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
...+...+..+.+.++.+.|+|-+++|++|.+ |.|.+||++++.+.+.....|... |+.+++
T Consensus 136 --s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q~ 198 (327)
T KOG0643|consen 136 --SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQF 198 (327)
T ss_pred --ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------cccccc
Confidence 00011113334478999999999999999976 999999999855666666666654 458999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE-----ecCCCCC------c
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNS------A 476 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-----~~~~~~~------~ 476 (515)
++|..+++|+|.|.+-++||+.+-. .++++ ....|+++.+++|-...++.|+.-..--+ ..|.-.. -
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty-~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLE-VLKTY-TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred cCCcceEEecccCccceeeecccee-eEEEe-eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHH
Confidence 9999999999999999999998762 32333 34679999999998777666654322222 1111000 0
Q ss_pred cccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 477 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.+..+...+|=++|++++|||||+..++|+.+|.
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 0122233468899999999999999999999884
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=196.96 Aligned_cols=375 Identities=12% Similarity=0.168 Sum_probs=268.0
Q ss_pred cccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..-.+.|..+.|+|.+ +++++. ..|.+..|+..++... +....|..++.
T Consensus 197 k~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~--------------------k~~~~fek~ek--------- 246 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLV--------------------KRQGIFEKREK--------- 246 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceE--------------------EEeeccccccc---------
Confidence 3456788999999955 455555 4668999998877542 12233455441
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.-|.+++|.+ ++ -.++|..+|.|.||+..+.+..+....+ .+.|+ ++....+|..
T Consensus 247 --k~Vl~v~F~e--ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~-------~L~~lr~Gtl----- 301 (626)
T KOG2106|consen 247 --KFVLCVTFLE--NG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF-------SLCMLRDGTL----- 301 (626)
T ss_pred --eEEEEEEEcC--CC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-------EEEEecCccE-----
Confidence 5699999954 43 4899999999999999887765554422 46666 7888888887
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccc---c----------------cccee------------eeeeccCcCCeEE
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETN---L----------------VAGCR------------RIYAHAHDYHINS 239 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~----------------~~~~~------------~~~~~~~~~~v~~ 239 (515)
++|+.|..|..||-.+...... . .+..+ .....+|......
T Consensus 302 --------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 302 --------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred --------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 4599999999998211111000 0 00000 0112577888899
Q ss_pred EEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 240 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
++.+|+..+|+++ .|+.+++|+ ..+.... .....+..|+.|+|.| .++.|...|...+.|.++..+
T Consensus 374 la~hps~~q~~T~gqdk~v~lW~--~~k~~wt---------~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKHVRLWN--DHKLEWT---------KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred EEcCCChhheeeccCcceEEEcc--CCceeEE---------EEecCceeEeeccCcc--eEEEeeccceEEEEeccccee
Confidence 9999999999998 899999999 2333222 1136778999999997 899999999999999988654
Q ss_pred cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCC
Q 010206 319 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 397 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
+.. ..-..++++++|+|+|.+||.|+. +.|+||.+..++........+...
T Consensus 441 v~~-----------------~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs----------- 492 (626)
T KOG2106|consen 441 VTI-----------------HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS----------- 492 (626)
T ss_pred EEE-----------------EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc-----------
Confidence 321 111368999999999999999986 999999998767666666555441
Q ss_pred CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee------------------ccCCCceeeEEECCCCCeeEe
Q 010206 398 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL------------------EASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 398 ~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~l~s 459 (515)
.++.+.||+|+++|.+-+.|-.|..|..... +..... ..+...+++++.+..++.+|+
T Consensus 493 ---~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~ 568 (626)
T KOG2106|consen 493 ---PITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS 568 (626)
T ss_pred ---eeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence 1668999999999999999999999944322 221111 145667788888899999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE-EEcCCcEEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~~~~~i~~ 514 (515)
|...|.|+|++---........+..+|.+.|.+++|..+...+. ++.++.++.|.
T Consensus 569 gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 569 GDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred cccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 99999999933222222223334557899999999998777666 55567788885
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=189.46 Aligned_cols=277 Identities=18% Similarity=0.225 Sum_probs=206.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +.+|.++++++.|.++++||..+++..+...
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------------- 53 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------------- 53 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------------------
Confidence 67999999 6678899999999999999999987655422
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~ 269 (515)
.+...+..++|......++. . .|.+|+..++.+.+..
T Consensus 54 ---------------------------------------skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl- 93 (311)
T KOG1446|consen 54 ---------------------------------------SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL- 93 (311)
T ss_pred ---------------------------------------cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE-
Confidence 22234555666554444444 3 4999999999977654
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
+.+.+|...|.+++.+|-+ ..+++++.|++|++||+|..+... .+.. ..-..++
T Consensus 94 -------RYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg----~l~~--------------~~~pi~A 147 (311)
T KOG1446|consen 94 -------RYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQG----LLNL--------------SGRPIAA 147 (311)
T ss_pred -------EEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCce----EEec--------------CCCccee
Confidence 2789999999999999998 899999999999999999654321 1111 2334578
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
|.|.|-++|++.. ..|++||+++- ..|..++........ +.+.+.|||||++|+.++..+.+++.|
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 9999999999887 69999999974 456666654422111 134899999999999999999999999
Q ss_pred cCCCCcceeeeccCCCce---eeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEcCCCCEEE
Q 010206 428 CSEGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~la 503 (515)
.-+| .+..++..+...- -...|+|+++++++|+.||+|.++.. ..........+ +...+.++.|+|.-.++|
T Consensus 216 Af~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~---~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 216 AFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL---ETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred ccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc---CCCcEeeEecCCCCCCccccccCCceeeee
Confidence 9988 4667777665433 57788999999999999999999222 11111111222 467889999999888888
Q ss_pred EEcCCcEEEE
Q 010206 504 CAASNSLYMY 513 (515)
Q Consensus 504 ~~~~~~~~i~ 513 (515)
+++. .+.+|
T Consensus 292 sa~s-~l~fw 300 (311)
T KOG1446|consen 292 SASS-NLVFW 300 (311)
T ss_pred ecCc-eEEEE
Confidence 7765 46666
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=195.39 Aligned_cols=315 Identities=17% Similarity=0.228 Sum_probs=231.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|.+.|..++.......+.+++.|.+.+||.++++. ++..+.+|.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----------------------CL~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----------------------CLATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccc-----------------------ceeeecccc---------
Confidence 456899999999998888899999999999999999887 557899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEE----eeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV----FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
+.|++|.|+++ +.++++++.|++-.||...-.-.... ........ . ..+ |...
T Consensus 191 ---GSVNsikfh~s--~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE-------~----------e~s-De~~ 247 (481)
T KOG0300|consen 191 ---GSVNSIKFHNS--GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE-------E----------EHS-DEHN 247 (481)
T ss_pred ---cceeeEEeccc--cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh-------h----------hcc-cccc
Confidence 99999999765 55999999999999998432110000 00000000 0 000 0000
Q ss_pred cccccccCCCCCCCCC-CCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPP-GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
.+.--.- +...+|++ +... +.+|...|.+..|...++.++++ .|.+..+||++
T Consensus 248 ---------~d~d~~~~sD~~tiRv---------------Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 248 ---------RDTDSSEKSDGHTIRV---------------PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE 302 (481)
T ss_pred ---------cccccccccCCceeee---------------eeee-eeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence 0000000 11113332 2222 47899999999999999999999 89999999999
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
++.... .+.+|....+.++-+|+. +++++.+.|.+.++||++..- . ...+|.||..
T Consensus 303 tge~v~--------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI--~-------------sV~VFQGHtd 358 (481)
T KOG0300|consen 303 TGEVVN--------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI--Q-------------SVAVFQGHTD 358 (481)
T ss_pred cCceec--------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc--c-------------eeeeeccccc
Confidence 887553 678999999999999997 999999999999999998431 1 1235788999
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.|+++.|..+. .+++|+| .+|++||+++-..++.++..... +..++.+..+..|+.--++..
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~----------------~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSP----------------ANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCc----------------cceeEeecCCceEEeccCCce
Confidence 99999999654 5677766 99999999976677887765443 237888888889999999999
Q ss_pred EEEEecCCCCccee-----eeccCCCceeeEEECCCCC--eeEeecCCCeEE
Q 010206 423 FRVFGCSEGSAEST-----TLEASKNPMRRQVQTPSRP--SRPLGSLSGVVR 467 (515)
Q Consensus 423 i~iw~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~ 467 (515)
|++||++.. .+. .-++|..-|.+.+|..+-+ -|++++.|..+.
T Consensus 422 vRlfDlnG~--RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 422 VRLFDLNGN--RLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred EEEEecCCC--ccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 999999843 332 3458999999999975544 367777776654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-26 Score=215.65 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=171.0
Q ss_pred eccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+|...|.+++|+|+ +.+|++| .|++|++||+.+..............+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 4789999999999997 7899998 8999999999764321110000012457899999999999998456789999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++||+++++... .+ .|...|.+++|+|+|.+|++++ ++.|+|||+++ ++.+..+.+|.+.
T Consensus 150 IrIWDl~tg~~~~----~i-------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKRAF----QI-------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcEEE----EE-------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 9999999876421 11 1235799999999999999876 59999999997 7888888888754
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCC----cEEEEecCCCCcceeee--ccCCCceeeEEECCCCCeeEee
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg----~i~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
+... .++...|++++++|++++.|+ .|+|||+++....+..+ ..+...+......+++.++++|
T Consensus 212 ~~s~----------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 212 KNTK----------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred ceeE----------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 3211 122345679999999887664 79999999644444333 3333444444556679999999
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+.|+.|++++-.... ........+..++..++|.|+..
T Consensus 282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 999999993321111 01111223456788999999754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=215.95 Aligned_cols=296 Identities=19% Similarity=0.303 Sum_probs=222.3
Q ss_pred cccccceE---EEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~---~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..|...|. ++..+. .+++|.+|++||.|++|++...... |+-.+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH-------
Confidence 35667777 566654 6678999999999999998654421 2223566788888
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|+.+..+ .+++.|+++|.|-+|++|+...+.. .
T Consensus 74 -----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~--~------------------------------------ 108 (735)
T KOG0308|consen 74 -----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT--F------------------------------------ 108 (735)
T ss_pred -----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc--h------------------------------------
Confidence 899999995 4566899999999999999875420 0
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe-cCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
|..+ +..|...|.|++. .++..++++| -|+.|.+||++++
T Consensus 109 -------------------------------------c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 109 -------------------------------------CMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred -------------------------------------hHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 0001 4679999999999 7788888888 6999999999976
Q ss_pred Cc--ccceecccCcccc-ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 266 NQ--SFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 266 ~~--~~~~~~~~~~~~~-~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
.. ....-.+....+. ++...|++++.++++ ..|++|+..+.+++||.++.+.+.+ +.||+
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimk----------------LrGHT 213 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMK----------------LRGHT 213 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceee----------------eeccc
Confidence 32 1111111112333 789999999999999 8999999999999999999875432 67899
Q ss_pred cceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+..++||..+++++ ||+|++||+.. .+++.++..|... |+++..+|+=..+++|+.||
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDG 277 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCC
Confidence 9999999999999999975 59999999995 8999999999865 67899999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|..=|+.+.... ..+-....|+..+...-...-+-+++.|+.|+-
T Consensus 278 ~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 278 NIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred cEEecccCCchhh-eEeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999999875222 222233445555555433333345555666654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-26 Score=234.52 Aligned_cols=259 Identities=14% Similarity=0.227 Sum_probs=191.0
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+...|.+++|+| ++.+||+++.||.|+|||+.+++ ....+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence 44567899999987 57899999999999999987665 335677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+| .++.+|++++.|++|++||+.++......
T Consensus 576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------------------------- 614 (793)
T PLN00181 576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------------------------- 614 (793)
T ss_pred --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence 8899999965 24569999999999999999876432211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.. ...|.++.|+ +++..|++| .|+.|++||++..+..
T Consensus 615 ----------------------------------------~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~ 653 (793)
T PLN00181 615 ----------------------------------------KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653 (793)
T ss_pred ----------------------------------------ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 11 2457788884 578999998 8999999999865432
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.. .+.+|...|.++.|. ++ ..|++++.|+.|++||++....... ......+.+|...+.++
T Consensus 654 ~~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~----------~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 654 LC-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN----------ETPLHSFMGHTNVKNFV 714 (793)
T ss_pred ce-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC----------CcceEEEcCCCCCeeEE
Confidence 21 456799999999997 45 6899999999999999975421000 01122356778889999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc-ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.|+|++.+|++|+. +.|++|+... ..++..+..... ..... .....-..|.+++|+|++.+|++|+.||.|+||
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~---~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGL---EVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCccccc---ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999875 9999999875 444433321110 00000 001111236699999999999999999999999
Q ss_pred ec
Q 010206 427 GC 428 (515)
Q Consensus 427 ~~ 428 (515)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-26 Score=215.91 Aligned_cols=258 Identities=18% Similarity=0.250 Sum_probs=180.0
Q ss_pred ecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEee
Q 010206 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (515)
Q Consensus 53 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~ 132 (515)
|+.++.|++|+..... ....+.+|. ..|.+++|+|.. +.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~~-~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPCF-SEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCCC-CCEEEEE
Confidence 5567788888865432 345678888 889999997642 4699999
Q ss_pred eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeee
Q 010206 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (515)
Q Consensus 133 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~ 212 (515)
+.|++|++||+.++..... .
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~----------------------------------------------------------- 113 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-E----------------------------------------------------------- 113 (568)
T ss_pred eCCCeEEEEECCCCCcccc-c-----------------------------------------------------------
Confidence 9999999999976421000 0
Q ss_pred eecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEE
Q 010206 213 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE 290 (515)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 290 (515)
+ ..+... +.+|...|.+++|+|++..+ +++ .|++|++||+++++... .+. |...|.+++
T Consensus 114 -i--------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--------~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 -I--------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--------QIN-MPKKLSSLK 174 (568)
T ss_pred -c--------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--------EEe-cCCcEEEEE
Confidence 0 000001 36788999999999998765 566 79999999999776443 222 457799999
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce-----eEEEEccCCCEEEEEc-C--
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-----SDIKFARNGRHILSRD-Y-- 362 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~~~~l~s~~-~-- 362 (515)
|+|+| .+|++++.|+.|++||+++++... . +.+|.+.+ ....|++++.+|++++ +
T Consensus 175 wspdG-~lLat~s~D~~IrIwD~Rsg~~i~----t------------l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 175 WNIKG-NLLSGTCVGKHMHIIDPRKQEIAS----S------------FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred ECCCC-CEEEEEecCCEEEEEECCCCcEEE----E------------EecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 99999 899999999999999999886532 2 33444433 3334568888888743 3
Q ss_pred --CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 363 --MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 363 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
+.|+|||++...+++..+..+..... ++.....++|.++++|+.|+.|++|++..+......--.
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~ 304 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK 304 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc
Confidence 37999999965667766644432210 112233456889999999999999999866322222223
Q ss_pred CCCceeeEEECCCCC
Q 010206 441 SKNPMRRQVQTPSRP 455 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~ 455 (515)
+..+...+++.|...
T Consensus 305 s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 305 SCSPFRSFGFLPKQI 319 (568)
T ss_pred cCCCccceEEccccc
Confidence 567888999998754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=217.90 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=196.0
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc--cCCCCCCccCCCCcCCCceeec---CCCc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE--KAAGNGPIFGSHVSAIPKSYMA---NGGC 185 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~---~g~~ 185 (515)
|.+.|.++.| +++|+|||+|+.|+.|+||.+...+............ ...+.+.+. .+..++ .++.
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSEEKISSRT 336 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------ccccccccccccc
Confidence 4499999999 6789999999999999999998754422211111000 000000000 000000 0000
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS 265 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 265 (515)
. ..-.+.....+.+.+ .-.....++... +.+|.+.|.++.|+.++-+|-++-|.+|+||++...
T Consensus 337 s----------~~~~~~~s~~~~~p~-----~~f~f~ekP~~e-f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~ 400 (712)
T KOG0283|consen 337 S----------SSRKGSQSPCVLLPL-----KAFVFSEKPFCE-FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK 400 (712)
T ss_pred c----------ccccccCCccccCCC-----ccccccccchhh-hhccchhheecccccCCeeEeccccccEEeecCCCc
Confidence 0 000111111111111 111122234444 389999999999998874444448999999999976
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+.+ ..-.|.+.|+||+|+|.+.++|++|+-|+.+|||++...+... |. ....-|
T Consensus 401 ~CL---------~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-----W~------------Dl~~lI 454 (712)
T KOG0283|consen 401 ECL---------KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-----WN------------DLRDLI 454 (712)
T ss_pred cee---------eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-----eh------------hhhhhh
Confidence 655 3345999999999999777999999999999999998766432 11 122579
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i 423 (515)
++++|.|||++.+.|+. |.+++|+... .+....+..+....... .-..|+.+.|.|.. ..|+..++|..|
T Consensus 455 TAvcy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrI 526 (712)
T KOG0283|consen 455 TAVCYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRI 526 (712)
T ss_pred eeEEeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCce
Confidence 99999999999999997 9999999984 55555444333211100 00136788888643 346677899999
Q ss_pred EEEecCCCCcceeeeccCCCc--eeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|||.++. .++..+++..+. -....|+.+|++++++++|..|++
T Consensus 527 RI~d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 527 RIYDGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred EEEeccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 99999765 566788876543 235577889999999999999999
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=202.69 Aligned_cols=270 Identities=16% Similarity=0.260 Sum_probs=194.8
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.|.+.|+.+.+-|.. ..+|+++..+.|.|||.......... ..+++....+.+|+
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------------~~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------------SGECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------------cccCCCceEEEeec---------
Confidence 36799999999999954 57777888999999998765432100 00223334577787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..-.+++|++...+ .|++++.|++|++||+...... ++.
T Consensus 178 ---~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~~---- 216 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKE---------------------------------DKV---- 216 (422)
T ss_pred ---ccccccccccccce-eEeeccCCCcEEEEeccccccC---------------------------------Ccc----
Confidence 44677999876665 8999999999999999764311 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...+....+|...|..++|++... +|+++ +|+.+.|||+++...
T Consensus 217 ----------------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 217 ----------------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred ----------------------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 001122479999999999999654 45555 899999999996311
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.. .....+|.+.|.|++|+|-+..+||+|+.|++|++||+|+.... ...+.+|...|.+
T Consensus 263 ~~------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---------------lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 263 KP------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---------------LHTFEGHEDEVFQ 321 (422)
T ss_pred CC------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---------------ceeccCCCcceEE
Confidence 11 12567899999999999987789999999999999999987542 2336778899999
Q ss_pred EEEccCCC-EEEE-EcCCeEEEEEeeCCCC----------CeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-E
Q 010206 348 IKFARNGR-HILS-RDYMTLKLWDINMDSG----------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 414 (515)
Q Consensus 348 ~~~s~~~~-~l~s-~~~~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 414 (515)
|.|||... .|++ |.|+.+.|||+..-++ +...+..|.+... .|..+.|+|...+ |
T Consensus 322 V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 322 VEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTI 389 (422)
T ss_pred EEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEE
Confidence 99999654 5555 4569999999975222 2223333443322 2458899998776 6
Q ss_pred EEecCCCcEEEEecCC
Q 010206 415 ATGSYSNLFRVFGCSE 430 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~ 430 (515)
++.++|+.+.||++..
T Consensus 390 ~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 390 ASVAEDNILQIWQMAE 405 (422)
T ss_pred EEecCCceEEEeeccc
Confidence 7889999999999873
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=209.85 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=214.9
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
..-+.|+ ..+.||+|. +..|++|+..+++.. .+..+. + ..|++
T Consensus 180 ~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~~--~------------~~vtS 222 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSFG--E------------ELVTS 222 (484)
T ss_pred hhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------EeEecC--C------------CceEE
Confidence 3456777 445788875 447999998877632 112222 3 77999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.| +++|.+|++|..+|.|.|||..+.+....
T Consensus 223 v~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~---------------------------------------------- 254 (484)
T KOG0305|consen 223 VKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRT---------------------------------------------- 254 (484)
T ss_pred EEE--CCCCCEEEEeecCCeEEEEehhhcccccc----------------------------------------------
Confidence 999 56788999999999999999887542111
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+.+ |...|-+++|+ +..+.+| .|+.|..+|++..+....
T Consensus 255 --------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----- 295 (484)
T KOG0305|consen 255 --------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----- 295 (484)
T ss_pred --------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-----
Confidence 223 88999999998 6677788 899999999998776543
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NG 354 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~ 354 (515)
.+.+|...|..++|++|+ .++|+|+.|+.+.|||...... +..+.+|.+.|.+++|+| ..
T Consensus 296 --~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----------------~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 296 --TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----------------KFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred --hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----------------cEEEeccceeeeEeeeCCCcc
Confidence 368899999999999999 9999999999999999944332 233677889999999999 66
Q ss_pred CEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe--cCCCcEEEEecC
Q 010206 355 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCS 429 (515)
Q Consensus 355 ~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--s~dg~i~iw~~~ 429 (515)
.+||+|+ |+.|++||..+ +..+..+..... |.++.|++..+-|+++ -.++.|.||+..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred CceEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 6888853 49999999996 666665543322 4589999998776654 367799999999
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+. .+...+.+|...|-.++++|+|..+++|+.|.++++
T Consensus 420 s~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 420 SM-KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cc-ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 85 566899999999999999999999999999999999
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=198.29 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=223.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.-+.|..| ++|+++|++++.||.|.+|+..+|++.+-.++.... .
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-------------------------~-------- 258 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-------------------------N-------- 258 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhhhc-------------------------c--------
Confidence 55888999 567889999999999999999999876654443110 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+--+...|.|++|+.|...|++| .||.|++|.++++....+
T Consensus 259 -------------------------------------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr- 300 (508)
T KOG0275|consen 259 -------------------------------------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR- 300 (508)
T ss_pred -------------------------------------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH-
Confidence 12355889999999999999999 899999999999876642
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
--..|...|+|+.|+.|+ ..+++++.|.++++.-+..|+...+ +.+|++.|+...|.
T Consensus 301 ------FdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKE----------------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 301 ------FDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKE----------------FRGHSSYVNEATFT 357 (508)
T ss_pred ------hhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHH----------------hcCccccccceEEc
Confidence 124799999999999998 8999999999999999999987543 78899999999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~ 429 (515)
+||..+++++ ||+|++|+..+ ..++.+++...... .|.++-.-| +...++.+...++|+|-++.
T Consensus 358 ~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred CCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 9999999986 59999999997 88888887544221 133554444 45678889999999999987
Q ss_pred CCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 430 EGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 430 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
++.+.++.. .....-+.+.+|.|.++.+.++|+.++- ...+++. ....-|...+..++-+|..+.||+
T Consensus 424 --GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----~tl~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 424 --GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----RTLPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred --ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----eeeecccccccccccCcccchhhh
Confidence 345555532 2344557788999999999999999886 2222222 122237888999999999999999
Q ss_pred EcCCc-EEEE
Q 010206 505 AASNS-LYMY 513 (515)
Q Consensus 505 ~~~~~-~~i~ 513 (515)
-+.|| +.+|
T Consensus 497 YsEDgllKLW 506 (508)
T KOG0275|consen 497 YSEDGLLKLW 506 (508)
T ss_pred hcccchhhhc
Confidence 98887 5566
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=220.49 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=189.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC--Cccc---------ceecccCccccccCCceEEEEEecCCCc
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSF---------NIVDVKPANMEDLTEVITSAEFHPTHCN 297 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~---------~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 297 (515)
...|.+.|+|+.|+|||++||+| +|+.|.+|+.... ...+ +-+.. ...+.+|...|..++|+|++ .
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp~~-~ 142 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSPDD-S 142 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCCCc-c
Confidence 46899999999999999999999 8999999998731 0000 00000 02578899999999999998 9
Q ss_pred EEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCC
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 376 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~ 376 (515)
+|++++.|++|.+||.++.+.. .++.+|.+.|..+.|.|-|+||++-+ |++|+||++.. -..
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~----------------~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i 205 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELL----------------KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGI 205 (942)
T ss_pred EEEEecccceEEEEccccceee----------------eeeecccccccceEECCccCeeeeecCCceEEEEEccc-cee
Confidence 9999999999999999887542 23677889999999999999999965 59999999764 455
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec----CCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.+.+..+-...... .-...+.|||||++|++.. .-.++.|.+..+. .....|-+|..++..+.|.|
T Consensus 206 ~k~It~pf~~~~~~---------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 206 EKSITKPFEESPLT---------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred eEeeccchhhCCCc---------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeCh
Confidence 55555443221100 0134799999999999764 2347888887655 33478899999999999986
Q ss_pred C-----CC------------eeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 453 S-----RP------------SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 453 ~-----~~------------~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
. .+ .+|+||.|+++.++....+. .+.+..--+...|.+++|+|||-.|.+++-|| +.++
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 1 11 57999999999995554443 23333333578999999999998888777555 5544
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-25 Score=200.29 Aligned_cols=372 Identities=14% Similarity=0.146 Sum_probs=245.4
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+|.|+||+.+.+.||.+-.+|.|.||++...- -....+.+++ ...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------------~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------------FLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------------eeeEEEecCC-----------CCc
Confidence 4689999999999999999999999999986532 2344566655 378
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|.+++|+ ++..|++.+.+|.|..||+.+.+.+...... .+.++ +++..|.+..+
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l-------- 125 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL-------- 125 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence 9999996 3568999999999999999999877665544 35555 67777777766
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+.|+.+|.+...+ ...... +..+. +....++|.+++|+|++..+++| .||.|++||..++...+ +..
T Consensus 126 ----~IgcddGvl~~~s--~~p~~I----~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~ 193 (691)
T KOG2048|consen 126 ----AIGCDDGVLYDFS--IGPDKI----TYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IIT 193 (691)
T ss_pred ----EeecCCceEEEEe--cCCceE----EEEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eee
Confidence 9999999665554 221111 11111 24446899999999999999999 89999999999877654 222
Q ss_pred ccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 274 VKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 274 ~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.....+.. ...-|+++.|-.++ .|++|...|.|.+||...+.+... +..|.+.|.+++..+
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiqS----------------~~~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQS----------------HSCHDADVLALAVAD 255 (691)
T ss_pred ecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhhh----------------hhhhhcceeEEEEcC
Confidence 21112222 34457888888775 899999999999999999887543 455678899999999
Q ss_pred CCCEEEEEc-CCeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 353 NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 353 ~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++..+++++ |+.|..|........ ......|... |.+++..++ .|++|+.|..+.+-..
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd---------------vrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD---------------VRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCccc---------------ceeeeeecc--eEEecceeeEEEEccc
Confidence 988888765 688888887753331 1112222222 447887766 8999999999988765
Q ss_pred CCCCcceeeeccCCCceee-EEECCCCCeeEeecCCCeEEE-ecCCCCCccc----cCCc-cccccCCeeEEEEcCCCCE
Q 010206 429 SEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR-VKGADNSALD----ANGN-AFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~----~~~~-~~~~~~~i~~~~~s~~~~~ 501 (515)
...+..-.. .....+-.. +...|..++++. -.+..+.+ ..|.-..+.+ ...+ .+.-...|.+.+.||||++
T Consensus 319 ~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~~~-w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~ 396 (691)
T KOG2048|consen 319 REFKNMDHR-QKNLFPASDRVSVAPENRLLVL-WKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNL 396 (691)
T ss_pred cccCchhhh-ccccccccceeecCccceEEEE-eccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCE
Confidence 542111111 111111111 222233222222 11222222 1111100000 0111 1123467999999999999
Q ss_pred EEEEcCCcEEEEe
Q 010206 502 IACAASNSLYMYY 514 (515)
Q Consensus 502 la~~~~~~~~i~~ 514 (515)
||.++-..+.||.
T Consensus 397 Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 397 IAISTVSRTKIYR 409 (691)
T ss_pred EEEeeccceEEEE
Confidence 9999866666663
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=215.76 Aligned_cols=269 Identities=14% Similarity=0.237 Sum_probs=219.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|...+.|..|. ..++++++.+.+|++|+..++.. ....+.+|.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------ 249 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------ 249 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------
Confidence 367789999998 45899999999999999887663 334489998
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.++++.. .+..|++|+.|.++++||..++++...
T Consensus 250 g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~C~~~----------------------------------------- 286 (537)
T KOG0274|consen 250 GGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGECTHS----------------------------------------- 286 (537)
T ss_pred CCceeEEEec--CCCEEEEEecCCcEEeEecCCCcEEEE-----------------------------------------
Confidence 9999999942 456999999999999999988875544
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.++... ...+++| .|.+|++|++.++....
T Consensus 287 -------------------------------------l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~-- 325 (537)
T KOG0274|consen 287 -------------------------------------LQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN-- 325 (537)
T ss_pred -------------------------------------ecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE--
Confidence 34677888887653 3456666 79999999999766542
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|.++|+++..+ + .++++|+.|++|++||+++++++.. +.+|...|.++.+.
T Consensus 326 ------l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~s----------------l~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 326 ------LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKS----------------LSGHTGRVYSLIVD 380 (537)
T ss_pred ------EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeee----------------ecCCcceEEEEEec
Confidence 456699999999998 4 6999999999999999998876432 67788999999887
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+. ..+++|+ |++|++||+.+ . +++.++.+|...+ -.....+++|++++.|++|++||.+
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v-----------------~~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLV-----------------SSLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCc-hhhhhhhhcCCcccc-----------------cccccccceeEeccccccEEEeecc
Confidence 65 7888887 49999999997 6 8999999988763 2233467899999999999999999
Q ss_pred CCCcceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++++ .++++ |...+..++.. ...+++++.|+.+++
T Consensus 442 ~~~~~-~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 442 EGECL-RTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred cCcee-eeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 98544 77877 67778777776 578899999999999
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=195.77 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=214.5
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeE-EEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
|.-+|.++++ ++++.+.++++.|++|.-|++.+++.. .+.... .
T Consensus 141 H~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------e----- 185 (479)
T KOG0299|consen 141 HQLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------E----- 185 (479)
T ss_pred ccCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccc----------------------------h-----
Confidence 3478999999 566789999999999999999998743 111110 0
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+........ +..+ .+|...+.+++.++|+++|++| .|..|.||+.++.+..
T Consensus 186 ------------------------v~k~~~~~~-k~~r---~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv 237 (479)
T KOG0299|consen 186 ------------------------VLKSHGNPL-KESR---KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV 237 (479)
T ss_pred ------------------------hhhhccCCC-Cccc---ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchh
Confidence 000000000 0000 3788999999999999999999 7999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|.+.|.+++|-... ..+++++.|+.+++|++.....+. ++.+|.+.|.++
T Consensus 238 ~--------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~ve----------------tlyGHqd~v~~I 292 (479)
T KOG0299|consen 238 K--------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVE----------------TLYGHQDGVLGI 292 (479)
T ss_pred h--------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHH----------------HHhCCccceeee
Confidence 3 568999999999998765 889999999999999998765432 267888999999
Q ss_pred EEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.....++.+-+| .|+++++|++. ......+.++.... -+++|- +...+++||.+|.|.+|+
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~--eesqlifrg~~~si---------------dcv~~I-n~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP--EESQLIFRGGEGSI---------------DCVAFI-NDEHFVSGSDNGSIALWS 354 (479)
T ss_pred chhcccceEEeccccceeEEEecc--ccceeeeeCCCCCe---------------eeEEEe-cccceeeccCCceEEEee
Confidence 988888887777 46999999995 34444555565432 278887 556789999999999999
Q ss_pred cCCCCcceeeeccCC-----------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEc
Q 010206 428 CSEGSAESTTLEASK-----------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+...+.+...-.+|. ..+++++..|....+|+|+.+|.|||+........-.....+...+.|++++|+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~ 434 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFS 434 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEc
Confidence 987755543323331 267899999999999999999999993222211101111223467899999999
Q ss_pred CCCCEEEEEc
Q 010206 497 PSENSIACAA 506 (515)
Q Consensus 497 ~~~~~la~~~ 506 (515)
++|++|++|.
T Consensus 435 ~sgk~ivagi 444 (479)
T KOG0299|consen 435 NSGKRIVAGI 444 (479)
T ss_pred cCCCEEEEec
Confidence 9999888774
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=183.99 Aligned_cols=247 Identities=16% Similarity=0.188 Sum_probs=190.4
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCC
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKG 306 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg 306 (515)
...|...|.++..+-.|+.|+++ +|++|+|+.++...+...+ ..+.+|.++|..++|.. .| .+||+++.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg 80 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFG-TILASCSYDG 80 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence 46899999999999999999998 8999999999877653333 27899999999999954 45 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEc-CCeEEEEEeeCCCC--CeeeEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSG--PVATFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~-~~~i~iwd~~~~~~--~~~~~~ 381 (515)
.|.||.-.+++-.. ......|...|++++|.|. |-.|+.++ ||.|.|.+.+..+. ..+...
T Consensus 81 kVIiWke~~g~w~k--------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~ 146 (299)
T KOG1332|consen 81 KVIIWKEENGRWTK--------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF 146 (299)
T ss_pred eEEEEecCCCchhh--------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence 99999988774211 1225678899999999994 55667664 69999999986422 122334
Q ss_pred eeccccccccccccCCCccceeeEEEcCC---C-----------CEEEEecCCCcEEEEecCCCCcce-eeeccCCCcee
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMR 446 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~~~~v~ 446 (515)
.|... |.+++|.|- | +.|++|+.|+.|+||+..++.... .+|++|.+-|+
T Consensus 147 aH~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 147 AHEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred ccccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 44433 558888885 4 569999999999999999875444 66999999999
Q ss_pred eEEECCCC----CeeEeecCCCeEEEecCCC---CCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 447 RQVQTPSR----PSRPLGSLSGVVRRVKGAD---NSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 447 ~~~~~~~~----~~l~s~~~d~~v~l~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+++.|.- .++|++|.||++.|....+ .++.++ +..+...+..++||+.|+.|++++ +|.+.+|-
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl---l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL---LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc---cccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 99999864 5899999999999932221 221111 124678899999999999999665 66788873
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=182.49 Aligned_cols=278 Identities=13% Similarity=0.146 Sum_probs=209.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.+.|+++.|+|.++.|+++++||.+++|++...... . .+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-----------------------~-------------~~~~~~ 55 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-----------------------L-------------KFKHGA 55 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-----------------------h-------------heecCC
Confidence 4688999999999999999999999999998765421 1 112227
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
++.+.+|.+ ....++|+.||.|+.+|+.++....
T Consensus 56 plL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~------------------------------------------- 89 (323)
T KOG1036|consen 56 PLLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQ------------------------------------------- 89 (323)
T ss_pred ceeeeeccC---CceEEEeccCceEEEEEecCCccee-------------------------------------------
Confidence 799999943 4689999999999999998875211
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+..|...|+|+..++....+++| .|++|++||.+......
T Consensus 90 ------------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--- 130 (323)
T KOG1036|consen 90 ------------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--- 130 (323)
T ss_pred ------------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---
Confidence 35688999999999988888887 89999999998533221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+. ....|.++... + +.|+.|+.+..+.+||+++.....+. .+ ....-.++++++-|
T Consensus 131 -----~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q~------re--------S~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -----TFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQR------RE--------SSLKYQTRCVALVP 187 (323)
T ss_pred -----ccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhhh------cc--------ccceeEEEEEEEec
Confidence 112 23478887765 3 67889999999999999987543210 00 11124689999999
Q ss_pred CCCEEEEEc-CCeEEEEEeeCC---CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 353 NGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 353 ~~~~l~s~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++.-.+.++ +|+|.+=.++.. ......|+.|..... ..+-+++|.+++|+|-.+.++||+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 777666665 598887666541 144567778875432 2234557889999999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.+. +.+..+......|..++|+.+|..||.++.
T Consensus 262 ~~r-Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNR-KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cch-hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 987 444677777788999999999999998863
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=209.24 Aligned_cols=235 Identities=14% Similarity=0.170 Sum_probs=171.3
Q ss_pred eccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+|.+.|.+++|+| ++++|++| .|++|++||+.+........ .....+.+|...|.+++|+|++.++|++|+.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~-~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS-DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC-cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 468999999999999 88899998 89999999997653211000 0012567899999999999986479999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++||+++++... .+.+|...|.+++|+|+|.+|++++. +.|++||+++ ++.+..+.+|...
T Consensus 150 VrIWDl~tg~~~~----------------~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKAVE----------------VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEEECCCCeEEE----------------EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 9999998875421 24567788999999999999999875 9999999997 7777788777643
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEec----CCCcEEEEecCCCCcceeeeccCC-CceeeEEECCCCCeeEeec
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s----~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~ 461 (515)
. ...+.|.+++..|++++ .|+.|++||+++..........+. ..+....+++++.+|++++
T Consensus 213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 12577888888877654 579999999987654444444333 3455567899999998887
Q ss_pred -CCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 462 -LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 462 -~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.|+.|++++-.+.. ........+...+..++|.|.
T Consensus 279 kgDg~Iriwdl~~~~--~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 279 KGEGNIRCFELMNER--LTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eCCCeEEEEEeeCCc--eEEEeeccCCCCCcceEeccc
Confidence 59999993222111 000011123445677777775
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=193.89 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=193.7
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.||...|+.+.++++...++++ .|..|++|......... ....|.++|+.+..+|+| .+|++++.|++.
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w 327 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------SSRPHEEPVTGLSLHPTG-EYLLSASNDGTW 327 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--------ccccccccceeeeeccCC-cEEEEecCCceE
Confidence 46899999999999999999998 89999999987655332 456799999999999999 999999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+.|++++..+...... ...-.+++.+|+|||..+.+|.. +.|+|||+.. +..+..|.+|.+.
T Consensus 328 ~Fsd~~~g~~lt~vs~~--------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~- 391 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDE--------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGP- 391 (506)
T ss_pred EEEEccCCcEEEEEeec--------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCc-
Confidence 99999998754321100 01135899999999999999875 9999999997 6788899998877
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCCeE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVV 466 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v 466 (515)
|..++|+.+|-||+++++|+.|++||++..+.. .++. ....++.++.|.+.|++|+.++.|=.|
T Consensus 392 --------------vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 392 --------------VKAISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred --------------eeEEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 459999999999999999999999999966433 3433 334589999999999999999988888
Q ss_pred EEec-CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEE
Q 010206 467 RRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 512 (515)
Q Consensus 467 ~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i 512 (515)
.+.+ ..+.| ........|.+..+.+.|....+++++++.+.++-
T Consensus 457 y~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 457 YICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred EEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhheE
Confidence 8833 22233 22233445777889999999999999998776543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=202.04 Aligned_cols=325 Identities=16% Similarity=0.220 Sum_probs=231.2
Q ss_pred hhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
+.|..+....+.+|++.|.||+..|.|.+||+|+.||+|+||.+.++..+ ..+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~~---- 438 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RTV---- 438 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EEE----
Confidence 34666667778899999999999999999999999999999999988754 211
Q ss_pred CcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
...+.|.+|+|+|.++-..|+++-. ..+.+-+..-|........
T Consensus 439 ---------~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t-------------------------- 482 (733)
T KOG0650|consen 439 ---------QFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPT-------------------------- 482 (733)
T ss_pred ---------eecceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcch--------------------------
Confidence 1125699999999887655555544 4466665443321111000
Q ss_pred cCCCccccccccCCCCCCCCC----CCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C-
Q 010206 181 ANGGCGERNFGCASNDSSFPP----GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D- 253 (515)
Q Consensus 181 ~~g~~l~~~~~~~~~~~~~~~----~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~- 253 (515)
.+.++++ ..+..+-.|. -...+......+. .-.|...|..+.|+..|.+|++. +
T Consensus 483 --------------~ell~~~~~~~~p~~~~~~W~--~~~~~e~~~~v~~---~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 483 --------------KELLASAPNESEPDAAVVTWS--RASLDELEKGVCI---VIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred --------------hhhhhcCCCccCCcccceeec--hhhhhhhccceEE---EEecCCccceeeeecCCceEEEeccCC
Confidence 0000111 1223444454 1111111111111 24688999999999999999985 2
Q ss_pred -CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 254 -DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 254 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
...|.|+++....... .+....+.|.++.|+|.. .+|+.++. ..|++||+..+.++.+
T Consensus 544 ~~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~kqelvKk----------- 602 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSKQELVKK----------- 602 (733)
T ss_pred CcceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhHHHHHHH-----------
Confidence 5678899987554332 344457889999999998 56665554 6899999988665432
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
+......|..++.+|.|..|+.|+. +.+..+|+....++.+++..|... +.+++|++.-
T Consensus 603 -----L~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---------------vr~Va~H~ry 662 (733)
T KOG0650|consen 603 -----LLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---------------VRSVAFHKRY 662 (733)
T ss_pred -----HhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---------------hhhhhhcccc
Confidence 1112246999999999999999886 999999999878899999999876 4499999999
Q ss_pred CEEEEecCCCcEEEEecCCC-----Ccc---eeeeccCCCc----eeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEG-----SAE---STTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~-----~~~---~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++++|+.||++.||--.-. ..+ +..|.+|... |-...|+|...||.+++.||+|++
T Consensus 663 PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99999999999998843221 122 2567788765 777789999999999999999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=182.86 Aligned_cols=315 Identities=15% Similarity=0.234 Sum_probs=217.9
Q ss_pred ccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...|.+.|+++.+.+ .|+|+++|+.||.|.|||+++...... ..+-.+... ..-...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c------~v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKC------IVAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheee------eccccCCccce---------
Confidence 457999999999998 789999999999999999976542100 000000000 00001123444
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
-.|..+.|-|...| .+.+++.|.++++||..+.+....+.++
T Consensus 102 ---y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------------------------------- 143 (397)
T KOG4283|consen 102 ---YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------------------------------- 143 (397)
T ss_pred ---eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence 78999999987665 8899999999999999887644443332
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.|.+-+++| ...++++| .|-.|++-|+.++
T Consensus 144 ---------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 144 ---------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ---------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 2333444444 23456677 8999999999988
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc--ccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT--RSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 343 (515)
.... .+.+|.+.|.++.|+|.....|++|+.||.|++||++.-.-+ ...++.++...+ ...-..|.+
T Consensus 179 s~sH--------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~g 247 (397)
T KOG4283|consen 179 SFSH--------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYG 247 (397)
T ss_pred ccee--------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccc
Confidence 7553 779999999999999988678999999999999999876433 334444432111 113467889
Q ss_pred ceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 344 SISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.+..++|+.+++++++. .+..+++|+..++...+..+..-. +++.+....-+. +.+...++---.++.
T Consensus 248 kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~----------~n~~~~~~~~~~-~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 248 KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII----------HNQTTSFAVHIQ-SMDSDVFVLFPNDGS 316 (397)
T ss_pred eeeeeeecccchhhhhccCccceEEeecccCccccccccccc----------ccccccceEEEe-ecccceEEEEecCCe
Confidence 99999999999999985 569999999986333333221100 001110000122 333344443445688
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++++-++ ..+..+..|...+.+.++.|+=+.+.+|+.|+.+..
T Consensus 317 lall~~~sg-s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 317 LALLNLLEG-SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred EEEEEccCc-eEEEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 999999887 455788899888999999999999999999998887
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=196.56 Aligned_cols=284 Identities=12% Similarity=0.181 Sum_probs=210.0
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
++..+.+|. +.|.+++=+|..- ..+++|+.||.|++||+.+..+...
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~~~-------------------- 104 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECIRT-------------------- 104 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhhhe--------------------
Confidence 445567777 8899999876442 4789999999999999987542221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|.+.|..+++.. +..|.+
T Consensus 105 ----------------------------------------------------------f~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 105 ----------------------------------------------------------FKAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred ----------------------------------------------------------eecccCceeeEEecc-cceEEe
Confidence 367888999999877 444545
Q ss_pred eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 252 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
|+|.+|+.|.++.. ... ++. ....+..+.-+..+ ..+++++. .|.|||.+....+. .
T Consensus 126 gdDKtvK~wk~~~~--p~~-------til-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~----s------ 182 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP--PLH-------TIL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVS----S------ 182 (433)
T ss_pred cCCcceeeeeccCC--cce-------eee-cccccccccccccc-ccccccCc--eeeecccccCCccc----e------
Confidence 59999999998742 211 221 34556777777766 78888887 48899986554322 1
Q ss_pred CCccccccccccceeEEEEccCCC-EEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGR-HILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
+......|.++.|+|-.. .|+++ +|+.|.+||++. ..+++.+...... ..++|+|
T Consensus 183 ------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRT----------------N~IswnP 239 (433)
T KOG0268|consen 183 ------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRT----------------NTICWNP 239 (433)
T ss_pred ------eecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeeccc----------------cceecCc
Confidence 222235799999999654 45554 679999999997 7777766544322 2799999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 489 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~ 489 (515)
++-.+++|++|..++.||++.-...+....+|.+.|..+.|+|.|+-+++||.|.+|||+...+.-..+.- ...--..
T Consensus 240 eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~ 317 (433)
T KOG0268|consen 240 EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQH 317 (433)
T ss_pred cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhhe
Confidence 88889999999999999999877777888999999999999999999999999999999332221110000 0011246
Q ss_pred eeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 490 LLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
|.++.||-|.+++.+|++++ +.+|-|
T Consensus 318 V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eeEEEEeccccEEEecCCCcceeeeec
Confidence 89999999999999999765 999965
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=186.00 Aligned_cols=310 Identities=14% Similarity=0.223 Sum_probs=223.9
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
.-...+.|||||.-|++-+.|..+.+|++....-..+. ........++++++. ..+.|
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~r~~-----------------eg~tv 107 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSYRYQ-----------------EGETV 107 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeEEec-----------------cCCEE
Confidence 34567899999999999999999999998543211000 000001111111111 11557
Q ss_pred EEEEEee-----cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 116 NKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 116 ~~l~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..-+|-+ .++..++++.+.|.-|++||.-+++++.....
T Consensus 108 ydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~------------------------------------ 151 (406)
T KOG2919|consen 108 YDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA------------------------------------ 151 (406)
T ss_pred EEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhh------------------------------------
Confidence 7777753 44566888899999999999998875443221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
|| . ...-....+++|+|||..|++|....|+++|+........
T Consensus 152 -------------------yd-----h-------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 152 -------------------YD-----H-------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred -------------------hh-----h-------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 11 0 0011234689999999999999999999999954443332
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
........-.+..+-|.+++|+|.....++.|+....+-||.-..+..+ .++.+|.+.|+.++|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------QLLGGHGGGVTHLQW 258 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------eeecccCCCeeeEEe
Confidence 2211111123446778999999988679999999999999887665442 236688899999999
Q ss_pred ccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 351 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 351 s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.++|+.|++|.. ..|-.||++....++..+..|....+ +.| -....|++++|++|+.||.|++||+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEec
Confidence 999999999864 79999999987888888887765322 212 4667889999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..+.....+..+..-++.+.+.|.-+.+|+++.......
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKY 366 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCceeecC
Confidence 9855666788899999999999999999999987665555
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=185.87 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=196.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCccc--CccccCcc-cccccccCCccceeeeec--ccCC----
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDN--GGQRRDLE-MMDYSMSRHPEFRYKTEF--QSHE---- 100 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~h~---- 100 (515)
...+|.+.|++++|+.||++||+.+.|+.|+||++.+-... .-+|..++ ++...+.|.|+-+-.... .+..
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 35689999999999999999999999999999998764322 12233333 234456666654322210 0000
Q ss_pred -------C----ccccccc--c--cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCC
Q 010206 101 -------P----EFDYLKS--L--EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (515)
Q Consensus 101 -------~----~~~~~~~--~--~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (515)
. -+..... + .++-.|..+-. -.++.++++++.|..|.+|+++ |+.......+....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n------ 231 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN------ 231 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc------
Confidence 0 0000000 0 12233444444 5567899999999999999999 54444333322110
Q ss_pred CccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC
Q 010206 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 245 (515)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (515)
...+.||+|+.+ ++++....+++|.+ +...++......+...+.+|+..|..++|+++
T Consensus 232 ---------~~aavSP~GRFi------------a~~gFTpDVkVwE~-~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 232 ---------YDAAVSPDGRFI------------AVSGFTPDVKVWEP-IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred ---------cceeeCCCCcEE------------EEecCCCCceEEEE-EeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 156899999999 99999999999996 55555444333333346899999999999999
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcc---cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
...+++. .||++++||.+-.... ..++..-+..+..-.+....++.+|++ ..|+. +....+++|..++++....
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYPE 367 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccchh
Confidence 9999998 8999999998643211 111111111222334445689999999 66664 5556899999988764322
Q ss_pred ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEE
Q 010206 322 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 369 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd 369 (515)
+-..|...|.+++|+++|+++++++|..++++.
T Consensus 368 ---------------~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 368 ---------------LEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ---------------HHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 124577899999999999999999998888876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=203.19 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=220.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|...|..+++.+.. .++++++||++++|+-..++.. -...+.+|.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~--------- 57 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK--------- 57 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc---------
Confidence 356899999999987654 7899999999999997655532 223456665
Q ss_pred cccceeEE-EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~-l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.|.. ++|.+ .++..+++|+.|.+|.+|.+.+.....
T Consensus 58 ---g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~-------------------------------------- 95 (745)
T KOG0301|consen 58 ---GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY-------------------------------------- 95 (745)
T ss_pred ---ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh--------------------------------------
Confidence 66766 88876 455579999999999999877643111
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++.+|...|.+++...++. +++| .|.++++|-.....
T Consensus 96 ----------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~- 133 (745)
T KOG0301|consen 96 ----------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV- 133 (745)
T ss_pred ----------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhhh-
Confidence 1579999999999888887 7887 79999999875332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. .+++|+..|+++++-|.+ .+++|+.|.+|++|.-. +. ..++.+|...|+.
T Consensus 134 -~--------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~~----------------l~tf~gHtD~VRg 184 (745)
T KOG0301|consen 134 -Y--------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--TL----------------LKTFSGHTDCVRG 184 (745)
T ss_pred -c--------ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--ch----------------hhhhccchhheee
Confidence 1 568999999999999986 89999999999999853 22 1237889999999
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+++-+++.++-++.||.|++|++. +..+.++.+|... ++++....++..++++++|++++||+
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred eEEecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEee
Confidence 999988777777778999999995 8899999999877 45888888889999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ...+.+......++++.+-++|. +++|+.||.||+
T Consensus 248 ~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 248 KD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred cC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 87 34466666677888888887775 567888999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=185.11 Aligned_cols=302 Identities=14% Similarity=0.169 Sum_probs=207.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..+.+.+| ++||.++++|+.|-.|+|.|++.--.+.... . .
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks~~~-e-----------------------m------------- 153 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKSKPK-E-----------------------M------------- 153 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhcchh-h-----------------------h-------------
Confidence 88999999 6789999999999999999987421111000 0 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+. ... ..+....+..|...|+++.|+|....|++| .|++|+++|+.........
T Consensus 154 ------~~~~----------------~qa-~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~ 210 (430)
T KOG0640|consen 154 ------ISGD----------------TQA-RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF 210 (430)
T ss_pred ------ccCC----------------ccc-CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH
Confidence 0000 000 111112257899999999999999999999 8999999999754322111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
+.-....+|.++.|+|.| .+|+.|..-..+++||+.+-++... . ..-.+|++.|+++.++
T Consensus 211 ------K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------a------nPd~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 211 ------KVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------A------NPDDQHTGAITQVRYS 270 (430)
T ss_pred ------HHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------c------CcccccccceeEEEec
Confidence 122246789999999999 8999999999999999998765321 0 0136688999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.|++.++|+. |.|++||--. .+++.++.. |.+. .|.+..|..+|+||.+.+.|..+++|.+.
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gs--------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGS--------------EVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred CCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCc--------------eeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 99999999986 9999999876 788877753 3332 15589999999999999999999999999
Q ss_pred CCCcceeeeccC-----CCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 430 EGSAESTTLEAS-----KNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 430 ~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
++..+. ...+. ..--+...|.....+++.-.+ .+.+.-++...- .......++|.+.++.+.-||.+..+.
T Consensus 336 t~R~l~-~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta--dr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 336 TGRMLK-EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA--DRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred CCceEE-EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch--hhhhhcccCCCCCceEEEeCCCCCcee
Confidence 985553 33221 111122223333333322221 112221111111 122234567999999999999999888
Q ss_pred EEcCC-cEEEEe
Q 010206 504 CAASN-SLYMYY 514 (515)
Q Consensus 504 ~~~~~-~~~i~~ 514 (515)
++++| ...+|+
T Consensus 413 TcsdD~raRFWy 424 (430)
T KOG0640|consen 413 TCSDDFRARFWY 424 (430)
T ss_pred eecccceeeeee
Confidence 77765 467775
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=181.49 Aligned_cols=261 Identities=16% Similarity=0.227 Sum_probs=199.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.+|.+.|..+...--|+.|||++.|++|+|+.+.+... .+.+.++.+|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4568999999999999999999999999999999876542 23678899999
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
++|..++|....-|.+|++++.||.|.||.-.+++..+...
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e------------------------------------ 97 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE------------------------------------ 97 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh------------------------------------
Confidence 99999999765668899999999999999988774222111
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
...|...|++++|.|. |-.|+++ +||.|.+.+.+...
T Consensus 98 ----------------------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 98 ----------------------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred ----------------------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 2478899999999885 5567777 89999999988662
Q ss_pred cccceecccCccccccCCceEEEEEecC---C----------CcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
.-.. +.....|.-.|++++|.|- | .+.|++|+.|..|+||+..++.-..
T Consensus 138 ~w~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~------------- 199 (299)
T KOG1332|consen 138 GWTT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL------------- 199 (299)
T ss_pred Cccc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh-------------
Confidence 2110 1134679999999999985 2 1469999999999999998864221
Q ss_pred ccccccccccceeEEEEccC----CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 334 TRSFFTEIIASISDIKFARN----GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~----~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..++.+|...|+.++|.|. ..+|++++. |++.||..+.+..+-+.-..+... ..++.+.||
T Consensus 200 -e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-------------~~~w~vSWS 265 (299)
T KOG1332|consen 200 -ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-------------DVVWRVSWS 265 (299)
T ss_pred -hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-------------cceEEEEEe
Confidence 1237889999999999994 357888875 999999887432221111111111 115689999
Q ss_pred CCCCEEEEecCCCcEEEEecCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..|+.|+.++.|+.|.+|.-..
T Consensus 266 ~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 266 LSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999997654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=181.90 Aligned_cols=236 Identities=13% Similarity=0.190 Sum_probs=186.9
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|.+.|++.+++.+...-+++ .|-+-++||.-++..+.. -.|+.-|..++|+.|. +.|++|+.+..+
T Consensus 55 feghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekll 124 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLL 124 (334)
T ss_pred eeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHh
Confidence 36899999999998888777777 799999999998887643 2488999999999998 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+||++..+.. ...+.+|.+.|..+.|....+.+++..+ ++||+||.++ +..++++.....
T Consensus 125 rvfdln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~-- 186 (334)
T KOG0278|consen 125 RVFDLNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSP-- 186 (334)
T ss_pred hhhhccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCC--
Confidence 99999765432 2236889999999999987778887655 9999999998 888888875543
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
|+++.+++||++|.+ +..+.|.+||.++-+.+ +..+. ...|.+...+|+...+++|+.|..++
T Consensus 187 --------------VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~l-Ks~k~-P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 187 --------------VTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLL-KSYKM-PCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred --------------CcceeeccCCCEEEE-ecCceeEEeccccccce-eeccC-ccccccccccCCCceEEecCcceEEE
Confidence 358999999997765 45678999999876333 22222 23466778899999999999999998
Q ss_pred Ee--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 468 RV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 468 l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+ ...+.. ..-.-+|-++|.++.|+|||..-|+|+.|| +.||+
T Consensus 250 kfDy~TgeEi----~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 250 KFDYNTGEEI----GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EEeccCCcee----eecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 82 222111 111346889999999999999999999877 88997
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=198.50 Aligned_cols=274 Identities=20% Similarity=0.295 Sum_probs=207.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|..+.|.+. ...|++++.|..|++|++..++......
T Consensus 176 gev~~v~~l~~--sdtlatgg~Dr~Ik~W~v~~~k~~~~~t--------------------------------------- 214 (459)
T KOG0288|consen 176 GEVHDVEFLRN--SDTLATGGSDRIIKLWNVLGEKSELIST--------------------------------------- 214 (459)
T ss_pred cccceeEEccC--cchhhhcchhhhhhhhhcccchhhhhhh---------------------------------------
Confidence 88999999654 4589999999999999987765111100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+..+.|+++.|.++++.++++ .|+.+++|++...+...
T Consensus 215 -------------------------------------LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~-- 255 (459)
T KOG0288|consen 215 -------------------------------------LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH-- 255 (459)
T ss_pred -------------------------------------hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--
Confidence 24555789999999999988887 89999999998665442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+|++.|+++.|.... ..+++|+.|.+|++||+....+..+. +.. +.+..|..+
T Consensus 256 ------TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~--------------S~cnDI~~~ 311 (459)
T KOG0288|consen 256 ------TLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTV---LPG--------------SQCNDIVCS 311 (459)
T ss_pred ------hhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccc---ccc--------------ccccceEec
Confidence 778999999999999876 55999999999999999886543221 111 345556655
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
...+++|. |++|++||.+. ..+......+.. |+++..+++|..|.+.+.|..+.+.|+++
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred --ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeeccc
Confidence 45677775 48999999996 777777766652 56999999999999999999999999997
Q ss_pred CCcceeeeccC----CCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc--cccCCeeEEEEcCCCCEEEE
Q 010206 431 GSAESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 431 ~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~ 504 (515)
. ...+.+.+. ....+.+.|+|++.|+++||.||.|++ |+.....+..... .....|++++|+|.|..|++
T Consensus 373 ~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 373 K-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLS 448 (459)
T ss_pred c-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhc
Confidence 6 444555432 234889999999999999999999999 3332222222221 12236999999999999998
Q ss_pred EcCCc-EEEE
Q 010206 505 AASNS-LYMY 513 (515)
Q Consensus 505 ~~~~~-~~i~ 513 (515)
++.+. +.+|
T Consensus 449 adk~~~v~lW 458 (459)
T KOG0288|consen 449 ADKQKAVTLW 458 (459)
T ss_pred ccCCcceEec
Confidence 87554 6676
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-24 Score=166.90 Aligned_cols=252 Identities=15% Similarity=0.159 Sum_probs=184.2
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec-C
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-K 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~-d 305 (515)
+.|.+.|.|.+|+|+|++|++| .|.+|++.-.+.......-. ...+..|.+.|+.++|-.+ +..+|++++. |
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~---dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH---DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCc---ceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 6789999999999999999999 89999998776443221100 0145668999999999643 3357777665 6
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
..|.+-|...++.. ..+.+|++-|.++- +=+|-.+++|+. .+|++||++- ..++.++...-
T Consensus 163 c~iy~tdc~~g~~~----------------~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~ 224 (350)
T KOG0641|consen 163 CKIYITDCGRGQGF----------------HALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDF 224 (350)
T ss_pred ceEEEeecCCCCcc----------------eeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeec-cceeeeccCcc
Confidence 77777787776542 22677888888763 335888999986 9999999996 55555553211
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
.... + .-..|.+++..|.|++|++|-.|....+||++.+ ..++.+..|...|+++.|+|...|+++++.|.
T Consensus 225 ~~~g-l-------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 225 HDGG-L-------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred cCCC-c-------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 1000 0 0013668999999999999999999999999966 66789999999999999999999999999999
Q ss_pred eEEE--ecCCCCCccccC-CccccccCCeeEEEEcCCCCEEE-EEcCCcEEEEe
Q 010206 465 VVRR--VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l--~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~la-~~~~~~~~i~~ 514 (515)
.|++ +.|.-.. ++. ...-+|+..+..+.|+|+.--+. ++.+...-+|.
T Consensus 296 ~ikltdlqgdla~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 296 KIKLTDLQGDLAH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eEEEeecccchhh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 9999 3222111 111 11236889999999999865544 55566677774
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=180.70 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=195.9
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
..+.+|. ..|++++| +.||++|++++.|++|++|+++.-..+...-+.
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R------------------ 127 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIR------------------ 127 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhh------------------
Confidence 3467787 88999999 678999999999999999999873211110000
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
.+. .. +..+.+.|.||-+-++..
T Consensus 128 -----------------------------------------~nv------------e~---dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 128 -----------------------------------------QNV------------EY---DHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred -----------------------------------------ccc------------cC---CCceEEEECCCcceEEEEE
Confidence 000 01 244678899988777765
Q ss_pred -CCCcEEEEeCCCCCc---ccceecccCc-cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 253 -DDLRINLWNLEISNQ---SFNIVDVKPA-NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~---~~~~~~~~~~-~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
...++++|.+...+. ....+..... --+.|+-.+..+-...++ .+|++++.|..|.+|+++ |+.+.. .+
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~----id 225 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQS----ID 225 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeee----ec
Confidence 678899997653321 1111100000 112356667777777776 899999999999999998 544321 11
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-------CCCeeeEeeeccccccccccccCCCc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.. ...-+..+.||+|++++++.- -.|++|.+--. -..+..+.+|...
T Consensus 226 tn------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa------------- 280 (420)
T KOG2096|consen 226 TN------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA------------- 280 (420)
T ss_pred cc------------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh-------------
Confidence 11 123466789999999999876 78999997421 1234556677655
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce---eee-------ccCCCceeeEEECCCCCeeEeecCCCeEEE-
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES---TTL-------EASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 468 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~---~~~-------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l- 468 (515)
|+.++|+++...++|.|.||++++||..-..... ..| .........+..+|+++.||.+.. ..+++
T Consensus 281 --V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~ 357 (420)
T KOG2096|consen 281 --VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVF 357 (420)
T ss_pred --eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEE
Confidence 5699999999999999999999999986431110 112 222333448999999999877643 33444
Q ss_pred --ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 469 --VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 469 --~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
.+|.... ++. --|...|.+++|+++|+++|+.++.-+.++
T Consensus 358 ~se~g~~~~--~~e---~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 358 ASEDGKDYP--ELE---DIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred EcccCccch--hHH---HhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 2222221 111 127889999999999999999988776665
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=179.90 Aligned_cols=271 Identities=12% Similarity=0.158 Sum_probs=198.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+|+|+|..+ .++++++.|++||+|+++.. .... +
T Consensus 28 DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------k------- 66 (347)
T KOG0647|consen 28 DSISALAFSPQAD-NLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------K------- 66 (347)
T ss_pred cchheeEeccccC-ceEEecccCCceEEEEEecCCcccc---------------------------------h-------
Confidence 7899999988444 46778999999999999863 2100 0
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
....|.++|.+++|+.||..+++| .|+.+++||+.+++..
T Consensus 67 -------------------------------------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-- 107 (347)
T KOG0647|consen 67 -------------------------------------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-- 107 (347)
T ss_pred -------------------------------------hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence 025688999999999999999998 8999999999987433
Q ss_pred eecccCccccccCCceEEEEEecCC-CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+..|.++|.++.|-+.. ...|++|+.|.+|+.||+|....+ .+++.+ ..++++.
T Consensus 108 -------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv----~t~~LP-------------eRvYa~D 163 (347)
T KOG0647|consen 108 -------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV----ATLQLP-------------ERVYAAD 163 (347)
T ss_pred -------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCee----eeeecc-------------ceeeehh
Confidence 567799999999998754 138999999999999999976543 223322 3455555
Q ss_pred EccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
.- ..+++.+. +..|.+|+++++....+........ .+.+++.-+|.+..+.|+-+|++-|..+
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~--------------Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW--------------QTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc--------------eeeEEEEEecCCceEeeeecceEEEEec
Confidence 43 34555554 4899999998644444433322211 1347888888888899999999999999
Q ss_pred CCCCcce-eeeccCC---------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 429 SEGSAES-TTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 429 ~~~~~~~-~~~~~~~---------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
..+.+.. -+++.|. .+|+.++|+|.-..|++.+.||++.+++..... -......|..+|++.+|+.+
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEecCC
Confidence 8753321 4566665 257889999999999999999999993322211 11122346789999999999
Q ss_pred CCEEEEEc
Q 010206 499 ENSIACAA 506 (515)
Q Consensus 499 ~~~la~~~ 506 (515)
|.++|-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99999554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=181.09 Aligned_cols=253 Identities=18% Similarity=0.312 Sum_probs=190.2
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
+...|.+.+.|. +-.|..+|+|+|.+ |.++|+|+.|-+|+|||.......
T Consensus 27 ~s~~~~l~~lF~------~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql---------------------- 76 (362)
T KOG0294|consen 27 DSVKPTLKPLFA------FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL---------------------- 76 (362)
T ss_pred cccceeeecccc------ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh----------------------
Confidence 344566666544 45799999999986 889999999999999999876643
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..+-.|. +.|+++.|.+......|++|+.||.|.+|+...-.....
T Consensus 77 -g~ll~Ha------------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--------------------- 122 (362)
T KOG0294|consen 77 -GILLSHA------------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--------------------- 122 (362)
T ss_pred -cceeccc------------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------
Confidence 3455666 889999996544344899999999999999876432211
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+++|.+.|+.++.+|.+++-++.
T Consensus 123 ---------------------------------------------------------lK~H~~~Vt~lsiHPS~KLALsV 145 (362)
T KOG0294|consen 123 ---------------------------------------------------------LKAHKGQVTDLSIHPSGKLALSV 145 (362)
T ss_pred ---------------------------------------------------------ecccccccceeEecCCCceEEEE
Confidence 46888889999999999987775
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|+.++.||+-+++..+.. . .....+.+.|+|.| .+|+.+..+ .|-+|.+.+..+..+ .+.+
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~------~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~----i~~~-- 208 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVL------N---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFRE----IENP-- 208 (362)
T ss_pred cCCceeeeehhhcCccceee------c---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhh----hhcc--
Confidence 8999999999887754321 1 12334559999999 777776665 688999887654322 1110
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE--Ec
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LS 408 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s 408 (515)
..+.++.|. ++..|++|. ++.|.+||... ..+...+.+|...+. ++. -.
T Consensus 209 -----------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~ 260 (362)
T KOG0294|consen 209 -----------KRILCATFL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTN 260 (362)
T ss_pred -----------ccceeeeec-CCceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEec
Confidence 236677776 455666665 49999999986 889999999986533 333 35
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|++.+|+|+|.||.|++||+...
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCceEEEEeccCceEEEEEcccc
Confidence 67899999999999999999865
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=208.83 Aligned_cols=252 Identities=15% Similarity=0.232 Sum_probs=201.4
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeee
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (515)
.|+..+.+- ......+|.+.|.+++|..-+.+|++|+.|.+++|||..+++ +...
T Consensus 232 ~~~~~~~~~--i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----------------------C~~~ 286 (537)
T KOG0274|consen 232 LWDLNNGYL--ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----------------------CTHS 286 (537)
T ss_pred EeecccceE--EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----------------------EEEE
Confidence 566665433 233367999999999998878899999999999999998887 5578
Q ss_pred cccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCC
Q 010206 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (515)
Q Consensus 96 ~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (515)
+.+|. +.|.++... ..++++|+.|.+|++|++.++....+
T Consensus 287 l~gh~------------stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l------------------------ 326 (537)
T KOG0274|consen 287 LQGHT------------SSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL------------------------ 326 (537)
T ss_pred ecCCC------------ceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE------------------------
Confidence 89998 889999873 23788889999999999997664332
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 254 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d 254 (515)
+.+|...|+++..+ +.++++| .|
T Consensus 327 ------------------------------------------------------~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 327 ------------------------------------------------------LRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ------------------------------------------------------eccccccEEEEEec--CCEEEEEecC
Confidence 24588999999987 7788888 89
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc-cccccccceeeeccCCC
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~ 333 (515)
++|++||+.+.+... .+.+|..+|+++.+.+. ..+++|+.|++|++||+++. ++.
T Consensus 351 ~~v~VW~~~~~~cl~--------sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~-------------- 406 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLK--------SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCI-------------- 406 (537)
T ss_pred ceEEEEEhhhceeee--------eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhh--------------
Confidence 999999999776553 67889999999988874 58999999999999999998 432
Q ss_pred ccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeee-ccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.++.+|.+-+..+.+ .+++|++++ |++|++||... +++++++.++ ... |+.+++. .
T Consensus 407 --~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~ 464 (537)
T KOG0274|consen 407 --HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--K 464 (537)
T ss_pred --hhhcCCccccccccc--ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--c
Confidence 235667677766665 477899876 49999999996 8889888874 222 3355544 4
Q ss_pred CEEEEecCCCcEEEEecCCCCcc
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+++++.||.+++||++++...
T Consensus 465 ~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 465 EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceEEEEecCCeeEEEecccCchh
Confidence 67888999999999999998444
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=199.26 Aligned_cols=354 Identities=16% Similarity=0.190 Sum_probs=244.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...++.+.|+++.=+|-=+.+|.|..+|+|.|+++..++.+ .+|+...
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil-----------------------~sFk~d~--------- 244 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL-----------------------MSFKQDW--------- 244 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE-----------------------EEEEccc---------
Confidence 34567799999999998889999999999999999887743 4444433
Q ss_pred cccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
+.|+++.| ..||. .+++++..|.+.+||++..++........ .+.+. ...|.|....+
T Consensus 245 ---g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah-------~~sv~-------~~~fl~~epVl-- 303 (910)
T KOG1539|consen 245 ---GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH-------YGSVT-------GATFLPGEPVL-- 303 (910)
T ss_pred ---cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc-------cCCcc-------cceecCCCceE--
Confidence 78999999 44554 45556777999999999988766544211 12232 55666666666
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++.+.|+.+++|- ....++. ....+. -.||..+..|+.|. .++..+.++ .|++.+.+++....
T Consensus 304 ----------~ta~~DnSlk~~v--fD~~dg~--pR~LR~-R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~ 368 (910)
T KOG1539|consen 304 ----------VTAGADNSLKVWV--FDSGDGV--PRLLRS-RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISES 368 (910)
T ss_pred ----------eeccCCCceeEEE--eeCCCCc--chheee-ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHH
Confidence 9999999999997 4434432 112222 36899999999987 577777776 78877777653211
Q ss_pred cccc-----------------------------------------------------eec----------ccCccccccC
Q 010206 267 QSFN-----------------------------------------------------IVD----------VKPANMEDLT 283 (515)
Q Consensus 267 ~~~~-----------------------------------------------------~~~----------~~~~~~~~~~ 283 (515)
+..+ .++ ++|..+....
T Consensus 369 ~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~ 448 (910)
T KOG1539|consen 369 QSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDD 448 (910)
T ss_pred HhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccC
Confidence 0000 000 0111122234
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
..+++++.++-| ++.+.|...|.|-+|++..|-...+ |.. -..|.++|++++...-++.+++++.
T Consensus 449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s----f~~---------~~ah~~~V~gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS----FGD---------SPAHKGEVTGLAVDGTNRLLVSAGAD 514 (910)
T ss_pred cceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc----ccc---------CccccCceeEEEecCCCceEEEccCc
Confidence 668899999998 8999999999999999998864322 110 2467899999999988888998765
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccc-------cc----c-----ccccC----------CCccceeeEEEcCCCCEEEE
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRP-------KL----C-----DLYEN----------DSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~----~-----~~~~~----------~~~~~v~~~~~s~~~~~l~s 416 (515)
|.+++||+.. ..++..+........ .+ + .++.. +.-..+++++|||||++|++
T Consensus 515 Gilkfw~f~~-k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis 593 (910)
T KOG1539|consen 515 GILKFWDFKK-KVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS 593 (910)
T ss_pred ceEEEEecCC-cceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE
Confidence 9999999985 443333322111000 00 0 00000 01124679999999999999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC-CeEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l 468 (515)
++.|++|++||+.++. ++..+ .-..+...+.++|+|.+||+...| ..|++
T Consensus 594 asmD~tIr~wDlpt~~-lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 594 ASMDSTIRTWDLPTGT-LIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eecCCcEEEEeccCcc-eeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEE
Confidence 9999999999999983 43222 235678899999999999999998 56777
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=177.77 Aligned_cols=267 Identities=15% Similarity=0.220 Sum_probs=196.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.|+|+ +..|++++.||++++||+....++.
T Consensus 14 d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 14 DGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred hceeeEEEcCc--CCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 77999999744 4589999999999999987653211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|..++.+++|.++.+ +++| -||.|+.+|+.++...
T Consensus 50 -------------------------------------~~~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~--- 88 (323)
T KOG1036|consen 50 -------------------------------------KFKHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNED--- 88 (323)
T ss_pred -------------------------------------heecCCceeeeeccCCce-EEEeccCceEEEEEecCCcce---
Confidence 125668899999988654 5555 8999999999987654
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|..+|.|+.+++-. ..+++|+.|++|++||.++.... ..++.. ..|.++..+
T Consensus 89 ------~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~-------------kkVy~~~v~ 144 (323)
T KOG1036|consen 89 ------QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVV----GTFDQG-------------KKVYCMDVS 144 (323)
T ss_pred ------eeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccc----cccccC-------------ceEEEEecc
Confidence 556799999999999876 79999999999999999973321 122211 358888776
Q ss_pred cCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|..|+. +.+..+.+||+++-..+.+... .... +.+.++++-|++.-.+.+|-||+|.+=.++.
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~lk------------yqtR~v~~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SSLK------------YQTRCVALVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhcc--ccce------------eEEEEEEEecCCCceEEEeecceEEEEccCC
Confidence 556666 4569999999997433332211 1111 1134889999888899999999998855554
Q ss_pred CC---cceeeeccCC---------CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 431 GS---AESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 431 ~~---~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.. .....++.|. .||++++|+|-.++++||+.||.|.+ |++...+...+...+...|.+++|+.|
T Consensus 209 s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~d 285 (323)
T KOG1036|consen 209 SEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMD 285 (323)
T ss_pred chHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccC
Confidence 31 2224566664 47999999999999999999999999 433322233344456678999999999
Q ss_pred CCEEEEEcC
Q 010206 499 ENSIACAAS 507 (515)
Q Consensus 499 ~~~la~~~~ 507 (515)
|..||+|++
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999873
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=192.00 Aligned_cols=260 Identities=12% Similarity=0.122 Sum_probs=198.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccccee-cccC-ccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV-DVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
..|.+.|+.+...|+...++++ ..+.|.|||..+........ ..+| ..+.+|...-++++|++...-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4788999999999987777764 79999999987554332211 1222 367888887889999998767999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEeeC-CCCCeeeEeee
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINM-DSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~-~~~~~~~~~~~ 383 (515)
.|++||+...... .....++..+.+|...|..++|++- ..++++.++ +.+.|||+++ ..++.....+|
T Consensus 201 ~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 9999999765431 1112234557889999999999994 445556554 9999999995 35666677777
Q ss_pred ccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeec
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGS 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~ 461 (515)
... +++++|+| ++..|||||.|++|.+||+++-...+.++++|...|..+.|+|.. ..|||++
T Consensus 272 ~~~---------------vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 272 SAE---------------VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CCc---------------eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 765 56999999 455788999999999999999877889999999999999999976 4689999
Q ss_pred CCCeEEEecCCCCC-----------ccccCCccccccCCeeEEEEcCCCCEEE-EEc-CCcEEEEe
Q 010206 462 LSGVVRRVKGADNS-----------ALDANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNSLYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~-~~~~~i~~ 514 (515)
.|+.+.+++-.+.- +.++....-+|...|..++|+|...+++ +++ ++-+.||.
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 99999992221111 1122333458999999999999999876 334 45588885
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=190.91 Aligned_cols=242 Identities=15% Similarity=0.254 Sum_probs=192.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.+.|.++.|-.||++||+|+..|.|+|||..+.. .+..+.+|+ .
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----------------------iLR~~~ah~------------a 111 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----------------------ILRQLYAHQ------------A 111 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEeccccHH-----------------------HHHHHhhcc------------C
Confidence 46789999999999999999999999999955422 345688888 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
+|..+.|+|. ++..|++|+.|+.+++||+.+... .
T Consensus 112 pv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~------------------------------------------ 146 (487)
T KOG0310|consen 112 PVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--Q------------------------------------------ 146 (487)
T ss_pred ceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--E------------------------------------------
Confidence 9999999875 457888999999999999987642 1
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
..+.+|...|+|.+|+|. +..+++| .||.|++||++......
T Consensus 147 ----------------------------------~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-- 190 (487)
T KOG0310|consen 147 ----------------------------------AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-- 190 (487)
T ss_pred ----------------------------------EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee--
Confidence 014689999999999996 4477778 79999999999774221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.--.|..+|-++.+-|.| .+|++++. ..+++||+-+|..... .+..|...|+|+.+.
T Consensus 191 ------~elnhg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll~---------------~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 191 ------VELNHGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLLT---------------SMFNHNKTVTCLRLA 247 (487)
T ss_pred ------EEecCCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceehh---------------hhhcccceEEEEEee
Confidence 113489999999999998 78887765 4899999986643211 123377889999999
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
.++..|++|+ |+.+++||+.+ .+.+..+..... |.+++.+||++.++.|..||.+.+=+...
T Consensus 248 s~~~rLlS~sLD~~VKVfd~t~-~Kvv~s~~~~~p----------------vLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRHVKVFDTTN-YKVVHSWKYPGP----------------VLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cCCceEeecccccceEEEEccc-eEEEEeeecccc----------------eeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999999987 69999999775 777777665442 45999999999999999999988775544
Q ss_pred C
Q 010206 431 G 431 (515)
Q Consensus 431 ~ 431 (515)
+
T Consensus 311 k 311 (487)
T KOG0310|consen 311 K 311 (487)
T ss_pred c
Confidence 3
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=203.60 Aligned_cols=237 Identities=20% Similarity=0.254 Sum_probs=190.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC-cccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~ 276 (515)
++|+.||.|++|+ ............... +..|...|+.+....+++.|+++ .|-+|++|+..... ...
T Consensus 41 fTgGRDg~i~~W~--~~~d~~~~s~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~------- 110 (735)
T KOG0308|consen 41 FTGGRDGIIRLWS--VTQDSNEPSTPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM------- 110 (735)
T ss_pred EecCCCceEEEec--cccccCCcccchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-------
Confidence 9999999999999 333322211112222 47899999999999999999998 89999999998664 122
Q ss_pred ccccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 277 ANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
..+..|.+.|.|+++ .++. .++|+|+.|+.|.+||+.++.. +....++.... .....++..+|++++.++.|.
T Consensus 111 stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t~---~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA--TLVASFNNVTV---NSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred hhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch--hhhhhcccccc---ccCCCCCccceeeeecCCcce
Confidence 267889999999999 7776 8999999999999999998742 01112221110 111237788999999999998
Q ss_pred EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.+++|+- +.|++||.++ .+.+-.+.+|... |..+..++||..++++|.||+|++||+....++
T Consensus 185 ~ivsGgtek~lr~wDprt-~~kimkLrGHTdN---------------Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDN---------------VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred EEEecCcccceEEecccc-ccceeeeeccccc---------------eEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence 8888775 9999999998 7777788899866 348899999999999999999999999976444
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++..|.+.++++..+|+-..+.+|+.||.|..
T Consensus 249 -~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 249 -ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred -eeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 789999999999999999999999999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=188.31 Aligned_cols=294 Identities=14% Similarity=0.167 Sum_probs=211.9
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.++|+++.|+|....|++++.||+++||.++..... .+.++.--. .
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------f 258 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------F 258 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------C
Confidence 3578999999999999999999999999999866531 112222222 5
Q ss_pred eeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+|.+.+|.| +|. .+++++....+..||+.+.+..++......+. ..+. ....+++++.+
T Consensus 259 Pi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~-----~~~e-------~FeVShd~~fi------ 318 (514)
T KOG2055|consen 259 PIQKAEFAP--NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE-----KSME-------RFEVSHDSNFI------ 318 (514)
T ss_pred ccceeeecC--CCceEEEecccceEEEEeeccccccccccCCCCccc-----chhh-------eeEecCCCCeE------
Confidence 699999965 565 88999999999999999988766654433221 1111 56778888888
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+..+..|.|.+.. ..+.+. ... -.-.+.|..++|+.+++.|+++ .+|.|.+||++......+.
T Consensus 319 ------a~~G~~G~I~lLh--akT~el--i~s------~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 319 ------AIAGNNGHIHLLH--AKTKEL--ITS------FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ------EEcccCceEEeeh--hhhhhh--hhe------eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 8999999999755 222221 111 1234778999999999988886 8999999999987555433
Q ss_pred ecccCccccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~--i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. ..+. -++++.++++ .+||+|+..|.|.|||..+... ...|.+...+......|++++
T Consensus 383 ~---------D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~----------s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 383 V---------DDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA----------STNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred e---------ecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc----------cCCCCchhhhhhhheeeeeee
Confidence 2 1222 3577888998 8999999999999999765321 112222333445567899999
Q ss_pred EccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 350 FARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
|+||.+.|+.++. ..+++-.+.+ ......+... +..+..|++++|||.|.+||.|..+|++.+|
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPS-CTVFSNFPTS------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccc-eeeeccCCCC------------CCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 9999999998763 7888877764 2222222222 2334457799999999999999999999999
Q ss_pred ecC
Q 010206 427 GCS 429 (515)
Q Consensus 427 ~~~ 429 (515)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 875
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=180.57 Aligned_cols=297 Identities=16% Similarity=0.276 Sum_probs=221.5
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
+++..++.+|. ..|..++-- .....+.+++.|.+-+||.++++++....
T Consensus 138 ~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~Y----------------- 186 (481)
T KOG0300|consen 138 FRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLATY----------------- 186 (481)
T ss_pred Eeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceeee-----------------
Confidence 34455666776 778888773 33447778888888999988887643332
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
.+|.+.|+++.|++.+.++
T Consensus 187 -------------------------------------------------------------~GH~GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 187 -------------------------------------------------------------TGHTGSVNSIKFHNSGLLL 205 (481)
T ss_pred -------------------------------------------------------------cccccceeeEEeccccceE
Confidence 4677777777777777777
Q ss_pred EEe-CCCcEEEEeCC----CCC--c--------c------------------cceecccCccccccCCceEEEEEecCCC
Q 010206 250 ISA-DDLRINLWNLE----ISN--Q--------S------------------FNIVDVKPANMEDLTEVITSAEFHPTHC 296 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~----~~~--~--------~------------------~~~~~~~~~~~~~~~~~i~~i~~~p~~~ 296 (515)
+++ .|++..||... .++ . . -..+..+.-.+.+|.+.|.+..|...+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg- 284 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG- 284 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-
Confidence 776 67777777521 000 0 0 000001112567899999999999888
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..+++++.|++..+||++++..+. .+.||....+.++-+|..+++++.+. .+.++||++..-.
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~----------------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVN----------------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred ceeeeeeccccceeeeeccCceec----------------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcc
Confidence 899999999999999999998642 37888899999999999999999875 9999999996556
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.+..|.+|... |+++.|..|. .+++|++|.+|++||+++-...+.++. ..++++.++++..++
T Consensus 349 sV~VFQGHtdt---------------VTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 349 SVAVFQGHTDT---------------VTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP 411 (481)
T ss_pred eeeeecccccc---------------eeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence 77889999876 5689998665 488999999999999997655544443 457889999999999
Q ss_pred eeEeecCCCeEEE--ecCCCCCccccCC-ccccccCCeeEEEEcCC---CCEEEEEcCCcEEEEe
Q 010206 456 SRPLGSLSGVVRR--VKGADNSALDANG-NAFDFSMKLLHLAWHPS---ENSIACAASNSLYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l--~~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~---~~~la~~~~~~~~i~~ 514 (515)
.++.--.+..||| +.|..+.+ +.. ...+|...|.+++|..+ .+++.+|-+..++=|+
T Consensus 412 iIAiPhDNRqvRlfDlnG~RlaR--lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLNGNRLAR--LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eEEeccCCceEEEEecCCCcccc--CCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 9999999999999 55555542 222 23468889999999865 4566677777777775
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=203.01 Aligned_cols=292 Identities=16% Similarity=0.209 Sum_probs=216.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-.....+|+.+++-..++.+++. .++||.+........+ . ..+.... ...-
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~-----------------~--~~~k~kq---------n~~~ 88 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKC-----------------N--HRFKTKQ---------NKFY 88 (839)
T ss_pred cccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcce-----------------e--eeccccc---------ceee
Confidence 34677889999998889888766 6889987654422111 0 1111100 1114
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+..+.|. +-+.++|++++..|.|.+||+......+ .+
T Consensus 89 S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~rnk----------------------------------~l------- 126 (839)
T KOG0269|consen 89 SAADVKWG-QLYSNLIATCSTNGVISVWDLNKSIRNK----------------------------------LL------- 126 (839)
T ss_pred ehhhcccc-cchhhhheeecCCCcEEEEecCccccch----------------------------------hh-------
Confidence 57778887 5566799999999999999987521000 00
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. .+..|...++++.|++. ..+|++| .||+|++||++..+...
T Consensus 127 --------------~--------------------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-- 170 (839)
T KOG0269|consen 127 --------------T--------------------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-- 170 (839)
T ss_pred --------------h--------------------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--
Confidence 0 03678899999999985 5567777 89999999999766442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
++.+..+.|+.++|+|..+..|+++...|.+++||+|....+.. .+..|.++|.++.|+
T Consensus 171 ------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---------------k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 171 ------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---------------KLTAHNGPVLCLNWH 229 (839)
T ss_pred ------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH---------------HhhcccCceEEEeec
Confidence 55667889999999998778999999999999999998664421 267899999999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEec--CCCcEEEEe
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFG 427 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s--~dg~i~iw~ 427 (515)
|++.+||+|+. +.|+|||+.. .+.......+. +..+..+.|-|+..+ |++++ .|-.|+|||
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~-~~~~~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTD-SRAKPKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCCceeeecCCCccEEEEeccC-CCccceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999875 9999999984 33222222222 223558999998775 66665 688999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
++..--...++..|.+.++.++|.. +...+.+++.|++|..
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 9976555589999999999999954 5668999999999886
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=174.21 Aligned_cols=270 Identities=13% Similarity=0.213 Sum_probs=204.0
Q ss_pred eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcE
Q 010206 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (515)
Q Consensus 49 ~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 128 (515)
.|++|+....|.=+++.-.. ..+.-...|.+...-.+++|. ++|++++. + +.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-----------~~~~~s~~~~l~~lF~~~aH~------------~sitavAV--s--~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-----------KGCTDSVKPTLKPLFAFSAHA------------GSITALAV--S--GPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-----------cccccccceeeeccccccccc------------cceeEEEe--c--cee
Confidence 36778888777777764322 111122334444555678888 99999998 3 569
Q ss_pred EEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
+++|+.|-+|+|||++..+....
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987542111
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+........ .+.+|.+.
T Consensus 79 ---------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~--------slK~H~~~ 129 (362)
T KOG0294|consen 79 ---------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK--------SLKAHKGQ 129 (362)
T ss_pred ---------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee--------eecccccc
Confidence 246789999999988764 67777 99999999998664332 67889999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeE
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 365 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i 365 (515)
|+.++.+|.+ ++-++-+.|+.+++||+-+|+.- ..+... ..-+.+.|+|.|.+++.+....|
T Consensus 130 Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i 191 (362)
T KOG0294|consen 130 VTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKI 191 (362)
T ss_pred cceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEE
Confidence 9999999999 89999999999999999887632 111111 22345999999999988877899
Q ss_pred EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCce
Q 010206 366 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM 445 (515)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v 445 (515)
-+|.+.+ ......+..... +.++.|. ++..|++|.+|+.|.+||..+. .....+.+|...|
T Consensus 192 ~i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 192 DIYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRV 252 (362)
T ss_pred EEEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhhe
Confidence 9999985 444444432211 2255554 6778999999999999999875 4558899999999
Q ss_pred eeEEE--CCCCCeeEeecCCCeEEE
Q 010206 446 RRQVQ--TPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 446 ~~~~~--~~~~~~l~s~~~d~~v~l 468 (515)
..+.+ .|++.+|+++|.||.|++
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeeEEEecCCceEEEEeccCceEEE
Confidence 99984 578899999999999999
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=183.87 Aligned_cols=414 Identities=13% Similarity=0.150 Sum_probs=270.6
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
.-.+|++...... . ..-...+.|.+++.+|.+..++.|+.||.+..++...++.. +
T Consensus 91 ~i~EwDl~~lk~~--~-~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~---------------------~ 146 (691)
T KOG2048|consen 91 SITEWDLHTLKQK--Y-NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT---------------------Y 146 (691)
T ss_pred eEEEEecccCcee--E-EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE---------------------E
Confidence 4456777653211 1 12235679999999999999999999997777776655532 4
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...|.-.+ ++|.++.| ++++..+++|+.||.|++||+..+....+...............++
T Consensus 147 ~r~l~rq~------------sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW---- 208 (691)
T KOG2048|consen 147 KRSLMRQK------------SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW---- 208 (691)
T ss_pred Eeeccccc------------ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE----
Confidence 44444444 88999999 5667789999999999999999988766554443322221222333
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
++.+..++.. ++|...|++++|| ... +...+. ...|...|.+++..+++..++++
T Consensus 209 ---Sv~~Lrd~tI-------------~sgDS~G~V~FWd--~~~------gTLiqS-~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 209 ---SVLFLRDSTI-------------ASGDSAGTVTFWD--SIF------GTLIQS-HSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ---EEEEeecCcE-------------EEecCCceEEEEc--ccC------cchhhh-hhhhhcceeEEEEcCCCCeEEEc
Confidence 5555555554 8999999999999 222 122222 36788999999999998888887
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--------- 322 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------- 322 (515)
.|+.|..+...+.+..... . .....|...+.+++..++ .+++|+.|..+.+--.+..+.....
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~--~--~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~ 336 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVI--N--SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASD 336 (691)
T ss_pred cCCCceEEEEecCCccceee--e--ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhccccccccc
Confidence 7999999988766542211 1 234568888999999874 7889999988877655432111000
Q ss_pred ----------cceeeecc---------------CCC-ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 323 ----------SKLFEEQE---------------APG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 323 ----------~~~~~~~~---------------~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
...+..+. .+. .......-...|.+.+.||+|++++.+.-..++||.+.... .
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~ 415 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-N 415 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-c
Confidence 00000000 000 00011112356899999999999999887789999998533 3
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcce-eee--ccCCCceeeEEECC
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTP 452 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~-~~~--~~~~~~v~~~~~~~ 452 (515)
++......... ...++..+.|+-|++.++.++ .+..+.++++.+..... ..+ ++...+++.+..++
T Consensus 416 vk~~~v~~~~~----------~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss 485 (691)
T KOG2048|consen 416 VKVINVDDVPL----------ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS 485 (691)
T ss_pred eeEEEeccchh----------hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC
Confidence 33332222111 111234688898998888777 77888888887653221 111 24567899999999
Q ss_pred CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEc-CCcEEEEe
Q 010206 453 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY 514 (515)
Q Consensus 453 ~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~-~~~~~i~~ 514 (515)
+|.|+|..+.+|.|.+++......-.+. ......|++++|+| +-+.|+++. +++++-|+
T Consensus 486 dG~yiaa~~t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 486 DGNYIAAISTRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CCCEEEEEeccceEEEEEcccceeecch---hccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 9999999999999998332222110111 12357899999995 456677665 56677765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=192.15 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=212.8
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeE-EEeeccCCcccCCCC-CCccCCCCcCCCceeecCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGN-GPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~g 183 (515)
++.+.|.+-|.++.+ +...+++++|+. |.|+|||+....-+ .+..+. .+.. ..+. +..+.|||
T Consensus 413 ~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd-----cl~rdnyiR-------SckL~pdg 477 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD-----CLNRDNYIR-------SCKLLPDG 477 (705)
T ss_pred hhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCCCCCcccccc-----ccCccccee-------eeEecCCC
Confidence 455677788999999 455678888775 88999999864211 111111 1111 1222 67889999
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeC
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~ 262 (515)
+.| ++|+...++.||| +........ ..+........+++.+||.+..+++ .||.|.|||+
T Consensus 478 rtL------------ivGGeastlsiWD--LAapTprik-----aeltssapaCyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 478 RTL------------IVGGEASTLSIWD--LAAPTPRIK-----AELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred ceE------------Eeccccceeeeee--ccCCCcchh-----hhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence 999 9999999999999 333222111 1122233456778999999998888 9999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
...... +.+++|.+.+.||.++++| ..|-+|+-|.++|.||++.+....++. -.
T Consensus 539 hnq~~V--------rqfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqhd-----------------F~ 592 (705)
T KOG0639|consen 539 HNQTLV--------RQFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-----------------FS 592 (705)
T ss_pred ccceee--------ecccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhhh-----------------hh
Confidence 865433 3789999999999999999 899999999999999999987644311 12
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+.|.++..+|.+.+|+.|-. +.+.|.... +.....+..|+.. |.++.|.+-|+++++.+.|+
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchh
Confidence 57999999999999999976 777777665 4444555556554 56999999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..|...-|..+.+. ...++|.+..++-+.+++++||.|+...+
T Consensus 656 lLnawrtPyGasiFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred hhhhccCccccceeec--cccCcceeeeeccCceEEEecCCCcceEE
Confidence 9999999877433221 33578899999999999999999976555
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=191.27 Aligned_cols=288 Identities=15% Similarity=0.243 Sum_probs=216.8
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+.|.+-|.++.+|...+++.||+. |.|+|||+...... .|... +.. +
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------~Pvsq----Ldc----------l 462 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------SPVSQ----LDC----------L 462 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----------------Ccccc----ccc----------c
Confidence 35678999999999999999999985 57999998754321 11111 111 1
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.-+.-|+++.. .+|++.|++|+.-.++.|||+......-..+.. +....|..++.+||.+..
T Consensus 463 ~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaelt-------------ssapaCyALa~spDakvc--- 524 (705)
T KOG0639|consen 463 NRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDAKVC--- 524 (705)
T ss_pred CcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcC-------------CcchhhhhhhcCCcccee---
Confidence 11255788888 567889999999999999999875433222211 122234478999999988
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.||.|.||| +.+. ...+. +.+|...+.||.+++||..|-+| -|.+|+.||++++++.
T Consensus 525 ---------FsccsdGnI~vwD--Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 525 ---------FSCCSDGNIAVWD--LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred ---------eeeccCCcEEEEE--cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh
Confidence 9999999999999 4442 22333 58999999999999999999998 6999999999988765
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.+ ......|.++-.+|++ .+++.|-.++.+.+-....... ..+..|.+.|.++
T Consensus 587 qq---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----------------yqlhlheScVLSl 639 (705)
T KOG0639|consen 587 QQ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----------------YQLHLHESCVLSL 639 (705)
T ss_pred hh---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----------------eeecccccEEEEE
Confidence 32 2246789999999999 8999999999988877654331 1245577899999
Q ss_pred EEccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.|.+.|+++++ |-|+.+..|.... +..+...+.. ..|.++.+|.|.+||+||+.|....+|.
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPy-GasiFqskE~----------------SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKES----------------SSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EecccCceeeecCchhhhhhccCcc-ccceeecccc----------------CcceeeeeccCceEEEecCCCcceEEEE
Confidence 99999999998 5568999999875 4433332211 1256999999999999999999888887
Q ss_pred c
Q 010206 428 C 428 (515)
Q Consensus 428 ~ 428 (515)
+
T Consensus 703 V 703 (705)
T KOG0639|consen 703 V 703 (705)
T ss_pred E
Confidence 5
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=194.85 Aligned_cols=274 Identities=15% Similarity=0.207 Sum_probs=206.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|....+.|+|.|+|++|.+++.||.|++|+....... |+.. .-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~ti-----~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PETI-----DISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cchh-----hccC-----------
Confidence 468899999999999999999999999999997554211 1111 1122
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++- . +.+|++++.+++|.+|.+.++....+
T Consensus 57 -~~v~~ia~--~--s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC--Y--SNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee--c--ccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66888776 3 44899999999999999877652111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+....-++++++++.+|++++.| +|-.|++-+........
T Consensus 92 --------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~- 132 (933)
T KOG1274|consen 92 --------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK- 132 (933)
T ss_pred --------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe-
Confidence 12233678899999999999998 89999999998776554
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+++|.++|.++.|+|++ .+||+.+-||.+++||+.++.+............. .....+..++|
T Consensus 133 -------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~--------~~s~i~~~~aW 196 (933)
T KOG1274|consen 133 -------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF--------ILSRICTRLAW 196 (933)
T ss_pred -------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCccccc--------cccceeeeeee
Confidence 678899999999999999 99999999999999999988754322211111110 01356888999
Q ss_pred ccC-CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~-~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+ |.+++.+.++.|++|+... ......+........ +..+.|+|.|+|||+++.||.|.|||.+
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 998 5555667889999999985 666666654332211 3479999999999999999999999998
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCee
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
+- .-......|.+++|.|+...+
T Consensus 263 t~-----~~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 263 TH-----ERHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred cc-----hhccccceeEEEecCCCCCee
Confidence 62 113345678899999887654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=191.33 Aligned_cols=280 Identities=12% Similarity=0.157 Sum_probs=217.8
Q ss_pred ccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
|.|++.+++.+|. ..|..++.. ++..+++++.||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 4677888899998 778888873 34579999999999999976654322111
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE-EEecC-C
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-D 245 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~ 245 (515)
..+|.+.|.+ +++-+ +
T Consensus 53 --------------------------------------------------------------~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 53 --------------------------------------------------------------FEGPKGFIANSICYAESD 70 (745)
T ss_pred --------------------------------------------------------------cccCcceeeccceecccc
Confidence 1234444444 66654 3
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+-.+++| .|.+|.+|.+....+.. .+.+|+..|.++....++ . +++|+.|.++++|-......
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~~------ 134 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELVY------ 134 (745)
T ss_pred CcceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchhhhc------
Confidence 4446676 89999999998776654 778999999999988887 4 99999999999998754321
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
.+.+|..+|.+++.-|++ .+++| .|.+|++|.- ++.++++.+|...++
T Consensus 135 ------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VR--------------- 183 (745)
T KOG0301|consen 135 ------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVR--------------- 183 (745)
T ss_pred ------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC---Cchhhhhccchhhee---------------
Confidence 267888999999999988 55565 4699999975 678899999987743
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcc
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 483 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~ 483 (515)
.+++-+++. ++++++||.|++|++. + ..+..+.+|.+-+.++...+++..++++++|+++++++..+.. +.
T Consensus 184 gL~vl~~~~-flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~------q~ 254 (745)
T KOG0301|consen 184 GLAVLDDSH-FLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV------QV 254 (745)
T ss_pred eeEEecCCC-eEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE------EE
Confidence 788886654 7789999999999994 4 4557899999999999999999999999999999995444222 33
Q ss_pred cccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 484 FDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 484 ~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+.+. ..|.++.+-+.|..++.++++-++||+
T Consensus 255 I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 255 ITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred EecCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 3343 478999999999888888888899986
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=179.35 Aligned_cols=281 Identities=16% Similarity=0.269 Sum_probs=205.7
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+.|+++.|+|... .|++++.|+++++|.+.......+..
T Consensus 213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS-------------------------------------- 252 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQS-------------------------------------- 252 (514)
T ss_pred cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhhee--------------------------------------
Confidence 37899999977655 99999999999999987653221111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.-...+|.+.+|.|+|+ .++++ ....++.||+.+.+...
T Consensus 253 --------------------------------------~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 253 --------------------------------------IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred --------------------------------------eeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 112236788999999999 67776 78899999998765331
Q ss_pred ceecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 270 NIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 270 ~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
++ .+.++ ...+.....+|++ ++|+..+..|.|.+....+++.+. .+... +.|..+
T Consensus 295 ----~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~----s~Kie-------------G~v~~~ 350 (514)
T KOG2055|consen 295 ----LK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELIT----SFKIE-------------GVVSDF 350 (514)
T ss_pred ----cc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhh----eeeec-------------cEEeeE
Confidence 11 22233 3456788899999 899999999999999988877642 23322 679999
Q ss_pred EEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+.|++.|++. ++|.|.+||++. ..++.++......- =+++|.|+++.|||+||..|.|.|||
T Consensus 351 ~fsSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 351 TFSSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred EEecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEec
Confidence 999999988775 559999999997 67788877555431 14789999999999999999999999
Q ss_pred cCCC-----CcceeeeccCCCceeeEEECCCCCeeEeecC--CCeEEE-----ecCCCCCccccCCccccccCCeeEEEE
Q 010206 428 CSEG-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR-----VKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 428 ~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~v~l-----~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.++. .+.+..+.--...|+.+.|+++.+.||.+|. +..+|| ......++ ..-..-+.|++|+|
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP-----~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP-----TSNTKVGHVTCMAF 490 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC-----CCCCcccceEEEEe
Confidence 7642 1222444455678899999999999988876 567777 11111111 00112357899999
Q ss_pred cCCCCEEEEEcCCc-EEEEe
Q 010206 496 HPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~~ 514 (515)
||.+.+||+|.+.| +.+|-
T Consensus 491 SP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 491 SPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred cCCCceEEeecCCCceeeEe
Confidence 99999999999765 66763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=199.26 Aligned_cols=237 Identities=16% Similarity=0.230 Sum_probs=183.2
Q ss_pred CeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+..+.|+. +.++|+++ ..|.|.+||+........+ ..+..|.-.++++.|++..+++|++|+.||.|++||+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-----~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-----TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-----hHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 455677875 57788888 7999999999863221111 1567799999999999999999999999999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+..+... ++.+....|+.|.|+| .+.+++++.| |.+.+||++.+.++...+..|.+.
T Consensus 164 R~~~S~~----------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp----- 222 (839)
T KOG0269|consen 164 RSKKSKS----------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP----- 222 (839)
T ss_pred ecccccc----------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----
Confidence 9865422 2334457899999999 6778888888 999999999888899999999987
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe-eEeecC--CCeEEE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSL--SGVVRR 468 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~--d~~v~l 468 (515)
|.++.|+|++.+||||+.|++|+|||+.+........-....|+..+.|-|+.++ ||+++. |-.|++
T Consensus 223 ----------V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~V 292 (839)
T KOG0269|consen 223 ----------VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHV 292 (839)
T ss_pred ----------eEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEE
Confidence 5599999999999999999999999998654333333345689999999999886 666655 678888
Q ss_pred ecCCCCCccccC-CccccccCCeeEEEEcC-CCCEEEEEcCCcEE
Q 010206 469 VKGADNSALDAN-GNAFDFSMKLLHLAWHP-SENSIACAASNSLY 511 (515)
Q Consensus 469 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~-~~~~la~~~~~~~~ 511 (515)
++-..+. +. .....|...++.++|.. |-..+.+++.|+++
T Consensus 293 WDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 293 WDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred Eeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 4433332 22 23457889999999976 34455566666643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=180.17 Aligned_cols=300 Identities=17% Similarity=0.252 Sum_probs=210.4
Q ss_pred ccccccceEEEEECCCC--CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g--~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
..-+.++|++++|+|.. +++|+|+..|.|-+||+.+.+. +..-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------------d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------------DKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------------ccCceEEeccCC--------
Confidence 44578999999999954 5899999999999999964432 222233466777
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|.+|.|+|... ..+++++.||+|++-|++......+...
T Consensus 235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~---------------------------------- 275 (498)
T KOG4328|consen 235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSL---------------------------------- 275 (498)
T ss_pred ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhc----------------------------------
Confidence 8899999998554 5899999999999999987642221111
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
......+.++.|+.+...++.+ .=|...+||+++.+.
T Consensus 276 ------------------------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 276 ------------------------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred ------------------------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 0112345567777777777776 556999999998887
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.+. .+.-|...|.+++++|..+.+|++++.|++.+|||+|....... +......|...|.+
T Consensus 314 ~~~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~s 374 (498)
T KOG4328|consen 314 EYE-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNS 374 (498)
T ss_pred cch-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeee
Confidence 554 44558889999999999889999999999999999987543221 01113457789999
Q ss_pred EEEccCCCEEEE-EcCCeEEEEEee---CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 348 IKFARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 348 ~~~s~~~~~l~s-~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
..|||.+-.|++ +-|..|+|||.. ....+..++. |...-. .....+...|.|+..++++|..-..|
T Consensus 375 AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~---------RwlT~fKA~W~P~~~li~vg~~~r~I 444 (498)
T KOG4328|consen 375 AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG---------RWLTPFKAAWDPDYNLIVVGRYPRPI 444 (498)
T ss_pred eEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc---------ccccchhheeCCCccEEEEeccCcce
Confidence 999996655666 556999999984 2133333333 332211 11123468999999999999999999
Q ss_pred EEEecCCCCcceeeeccC-CCceee-EEECCCCCeeEeec-CCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEAS-KNPMRR-QVQTPSRPSRPLGS-LSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~s~~-~d~~v~l 468 (515)
-|+|-+.+ +.+..+... ...|.+ ..++|-+..+++|+ ..|.|.+
T Consensus 445 Dv~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 445 DVFDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eEEcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 99998765 433443322 223433 47889888555554 4566666
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=168.40 Aligned_cols=285 Identities=21% Similarity=0.314 Sum_probs=191.6
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
-.|+.|++.|.+||+|+.||.|.|||+.+.. ....+.+|. .+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------RPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------cceeE
Confidence 7899999999999999999999999998655 235578887 88999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++| +++|..|++++.|..|.+||+..+.+.+...+.
T Consensus 71 l~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------------------------ 106 (405)
T KOG1273|consen 71 LCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------------------------ 106 (405)
T ss_pred EEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc------------------------------------------
Confidence 999 678999999999999999999988755544333
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE--EEEeCCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET--FISADDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
.+|+...|+|..+. +++--+..-.+-++..+... .+...
T Consensus 107 -------------------------------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d 147 (405)
T KOG1273|consen 107 -------------------------------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKD 147 (405)
T ss_pred -------------------------------------CccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCC
Confidence 44555555553222 22212222233333221111 10000
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
+ -........+..|.+.| +++++|...|.+.+||..+.+++.. +.... ...|..+.|+..|+
T Consensus 148 ~--d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~vas----~rits-----------~~~IK~I~~s~~g~ 209 (405)
T KOG1273|consen 148 D--DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECVAS----FRITS-----------VQAIKQIIVSRKGR 209 (405)
T ss_pred C--ccccccccccccccCCC-CEEEEecCcceEEEEecchheeeee----eeech-----------heeeeEEEEeccCc
Confidence 0 00011112233688888 9999999999999999998865432 11110 15689999999999
Q ss_pred EEEEE-cCCeEEEEEeeC---CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCC
Q 010206 356 HILSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE 430 (515)
Q Consensus 356 ~l~s~-~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~ 430 (515)
+|+.- +|..|+.|+++. .++-...-..|. ....+.+..+ .+++||.+|.|++.++ .-..++||.-..
T Consensus 210 ~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~W-------k~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 210 FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQW-------KKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhh-------hheeecCCccEEEeccccceeEEEEecCC
Confidence 99984 569999999862 000000000000 0000011111 2789999999998777 345799999988
Q ss_pred CCcceeeeccCC-CceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
| .+++.|.+.. ...-.+.|+|-.+.+++- ..|.+++
T Consensus 282 G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 282 G-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred c-ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 7 6778898887 667788899999999888 7788888
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-22 Score=180.53 Aligned_cols=293 Identities=11% Similarity=0.101 Sum_probs=189.6
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
++.+++++.|+.|++||..+++.. ..+..+ ..+.+++|+ +++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~-----------------------~~~~~~-------------~~~~~l~~~--~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVT-----------------------RTFPVG-------------QRPRGITLS--KDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceE-----------------------EEEECC-------------CCCCceEEC--CCC
Confidence 457889999999999998766532 333333 336778994 556
Q ss_pred cEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
..+ ++++.++.|++||..+++......... .+. .+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~-------~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGP---------DPE-------LFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCC---------Ccc-------EEEECCCCCEE-----------EEEcCCCC
Confidence 666 556788999999999887654332211 111 56888999866 13445678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-CcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.+|| +... .....+ .+...+.+++|+|++++++++ .+ ..+.+||.++.+....+ ...
T Consensus 96 ~l~~~d--~~~~------~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~ 156 (300)
T TIGR03866 96 LVTVID--IETR------KVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVD 156 (300)
T ss_pred eEEEEE--CCCC------eEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcC
Confidence 999999 4321 111221 122346789999999999987 44 45777898765432211 122
Q ss_pred CceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE--
Q 010206 284 EVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-- 360 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-- 360 (515)
..+.+++|+|++ ..| +++..++.|++||+++++..... .+..... .........++|+|++++++.+
T Consensus 157 ~~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~~~~--~~~~~~~-------~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 157 QRPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVIKKI--TFEIPGV-------HPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CCccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceeeeee--eeccccc-------ccccCCccceEECCCCCEEEEEcC
Confidence 345789999998 655 45556999999999987643221 0110000 0000123468899999986553
Q ss_pred cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeec
Q 010206 361 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 361 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
+++.+.+||+.+ ++....+. +... +++++|+|+|++|+++ +.+|.|.+||+.++ ..+..++
T Consensus 227 ~~~~i~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~~~ 288 (300)
T TIGR03866 227 PANRVAVVDAKT-YEVLDYLL-VGQR---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKSIK 288 (300)
T ss_pred CCCeEEEEECCC-CcEEEEEE-eCCC---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEEE
Confidence 347899999985 55544432 2211 3489999999999876 46899999999987 4445665
Q ss_pred cCCCceeeEEECC
Q 010206 440 ASKNPMRRQVQTP 452 (515)
Q Consensus 440 ~~~~~v~~~~~~~ 452 (515)
... ..+.++++|
T Consensus 289 ~~~-~~~~~~~~~ 300 (300)
T TIGR03866 289 VGR-LPWGVVVRP 300 (300)
T ss_pred ccc-ccceeEeCC
Confidence 543 346777654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-25 Score=200.91 Aligned_cols=235 Identities=21% Similarity=0.328 Sum_probs=197.9
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..|...+.++..-..++.+++| .|..+-+|.+....... .+.+|..+|.++.|++.. .+|+.|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5688888898887778889998 78999999987655443 578899999999999998 8999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+||+...+.+. .+.+|...+.++.|+|-+.+.++|+ |+.+++||.+. ..+.+.+.+|...
T Consensus 96 ~wDleeAk~vr----------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~v-- 156 (825)
T KOG0267|consen 96 VWDLEEAKIVR----------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRV-- 156 (825)
T ss_pred eeehhhhhhhh----------------hhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCcce--
Confidence 99999876532 3678889999999999999999886 49999999996 7888999887655
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|..+.|+|+|+++++|++|..++|||+..| .+...++.|...+..+.++|..-.+++|+.|+++++
T Consensus 157 -------------v~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 157 -------------VDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred -------------eEEEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence 348899999999999999999999999887 566899999999999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
|.+...++....-.....|.+.+|+|+++.+++|....+
T Consensus 223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 332222233322234678999999999999999876543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=168.29 Aligned_cols=293 Identities=14% Similarity=0.214 Sum_probs=198.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.+.+|.+-|+|+.|.+-|+.+|+++.|++|+|||..... ..+.+...++.|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------~~W~~Ts~Wrah~--------- 59 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------GTWSCTSSWRAHD--------- 59 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------CceEEeeeEEecC---------
Confidence 456899999999999999999999999999999974433 2556777889998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-------eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecC
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (515)
+.|..+.|.+.+=|+.+++++.|+++.||.-... +......+.. .++.+. .+.|.|.
T Consensus 60 ---~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D------srssV~-------DV~FaP~ 123 (361)
T KOG2445|consen 60 ---GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD------SRSSVT-------DVKFAPK 123 (361)
T ss_pred ---CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeec------CCccee-------EEEecch
Confidence 9999999998888999999999999999976421 1111111111 123333 6777775
Q ss_pred CCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeee------eeccCcCCeEEEEecCC---CCEEEEeC
Q 010206 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRI------YAHAHDYHINSISNNSD---GETFISAD 253 (515)
Q Consensus 183 g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~---~~~l~s~~ 253 (515)
-.-| .+++++.||.++||+. .+.-....-..... -...+.....|+.|+|. .++|+.|.
T Consensus 124 hlGL----------klA~~~aDG~lRIYEA--~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 124 HLGL----------KLAAASADGILRIYEA--PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred hcce----------EEEEeccCcEEEEEec--CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 4444 2289999999999982 22111111111111 11346677889999973 66788884
Q ss_pred C------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC---cEEEEEecCCeEEEEecCcccccccccc
Q 010206 254 D------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 254 d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
| +.++||........... ...+.+|..+|+.++|.|+-+ .+||+++.|| |+||.++..........
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 4 48999987665533221 136778999999999999732 4899999999 99999975321000000
Q ss_pred eeeec---cCC-CccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeC--CCCCeeeEeee
Q 010206 325 LFEEQ---EAP-GTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINM--DSGPVATFQVH 383 (515)
Q Consensus 325 ~~~~~---~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~--~~~~~~~~~~~ 383 (515)
..... ..+ .....+.+|.+.|..+.|+-.|..|++. +||.|++|.... ..++...+...
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 00000 000 1122367899999999999999999985 559999998653 13344444433
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-23 Score=173.86 Aligned_cols=222 Identities=17% Similarity=0.213 Sum_probs=160.5
Q ss_pred ccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
.+|...=..++|||-. ..|++| .-+.|++|...++.-.. .+..+.+|...|-.++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 6888888999999932 247778 57889999998765443 2336678999999999999987899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEeeecc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 385 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~~~~ 385 (515)
+|||+|.+.... ....+.|.+.|+-+.|+.+-.+|++|+| |+++|||++. .++++..|+.|..
T Consensus 283 rIWDiRs~~~~~--------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKA--------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccc--------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 999999874211 1123567789999999998889999987 9999999985 3678889998887
Q ss_pred ccccccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
. |+++.|+|. ...|++++.|..|.+||+....-... ........+.-.|.. +|.
T Consensus 349 p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee---~~~~a~~~L~dlPpQ-LLF------ 403 (440)
T KOG0302|consen 349 P---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEE---IDQEAAEGLQDLPPQ-LLF------ 403 (440)
T ss_pred C---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhh---hccccccchhcCCce-eEE------
Confidence 6 669999995 45678888999999999975421100 000000001111110 000
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCC-EEEEEcCCcEEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~~~~~~i~~ 514 (515)
+ . .-+..|..+.|++.-+ +|++.+.+|+.||.
T Consensus 404 ---V--------------H-qGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 404 ---V--------------H-QGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ---E--------------e-cchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 0 0 0145688999999865 55566789999985
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=183.01 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=208.3
Q ss_pred ccccceEE--EEECC---CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 33 QEVDIISA--IEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 33 ~h~~~v~~--v~~s~---~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.|.-++.- ..|++ ....||.+..||.|.++|...... .++-+.+..+..|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f-----------------r~ee~~lk~~~aH~------- 100 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF-----------------RLEERQLKKPLAHK------- 100 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc-----------------chhhhhhccccccc-------
Confidence 34445544 67766 345899999999999999765432 12223334567787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|..+.|.| ....|++++.|.++++||+.+.++.....
T Consensus 101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~---------------------------------- 139 (720)
T KOG0321|consen 101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRL---------------------------------- 139 (720)
T ss_pred -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeeccee----------------------------------
Confidence 8899999976 44589999999999999999876432210
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 265 (515)
..+|...|.+++|.|... .|++| .||.|.|||++..
T Consensus 140 ------------------------------------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 140 ------------------------------------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ------------------------------------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 258888899999988544 55667 7999999998754
Q ss_pred Ccc--cc----e---ec-----ccC-----ccccccCCceEE---EEEecCCCcEEEEEec-CCeEEEEecCcccccccc
Q 010206 266 NQS--FN----I---VD-----VKP-----ANMEDLTEVITS---AEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 266 ~~~--~~----~---~~-----~~~-----~~~~~~~~~i~~---i~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~ 322 (515)
... .+ + .. .+| +....+...|.+ +.+..|. ..||+++. |+.|++||++......+
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r- 255 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYR- 255 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccc-
Confidence 310 00 0 00 011 122334444554 5555666 78888888 99999999998754321
Q ss_pred cceeeeccCCCcccccccc---ccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCC-CCeeeEeeeccccccccccccCC
Q 010206 323 SKLFEEQEAPGTRSFFTEI---IASISDIKFARNGRHILS-RDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYEND 397 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
..... ...+..| .-.+.++.....|.+|++ +.|+.|++|++.... .++..+.++....
T Consensus 256 -----~ep~~--~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s---------- 318 (720)
T KOG0321|consen 256 -----QEPRG--SDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS---------- 318 (720)
T ss_pred -----cCCCc--ccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce----------
Confidence 11100 0011112 235777777777777765 778999999998532 2444444443221
Q ss_pred CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 398 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 398 ~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
++ ..-..+||+.+|++|+.|...++|.+.+.......+.+|.-.|+.++|.|..- -+++++.|-.+++
T Consensus 319 -f~--vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~ki 387 (720)
T KOG0321|consen 319 -FY--VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKI 387 (720)
T ss_pred -ee--eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEE
Confidence 11 13467899999999999999999999988766788899999999999987653 3666799999998
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=179.60 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=137.7
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~- 362 (515)
.|+.+.|.|-+...|+.++.||.|++|.+..+.+... ...+...+..|...|+++.|+| ....|+++++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 3567777776557899999999999999987654211 1122345788999999999999 4567777765
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.+|++||+++ .+....+.+|... |+.++|||||+.+|+.+.||+|++|+.+++...+..-++..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999997 8888889999865 56999999999999999999999999988765543333221
Q ss_pred -CceeeEEECCCCCeeEeecCCCeEE----EecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 443 -NPMRRQVQTPSRPSRPLGSLSGVVR----RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 443 -~~v~~~~~~~~~~~l~s~~~d~~v~----l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..-..+.|.-+|++++..+.|..-. +++...+....+....++-...+.--.+.+|.+.|...+
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 2234677888999998888886533 233332221122222222233344445667777766554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=177.28 Aligned_cols=233 Identities=17% Similarity=0.243 Sum_probs=176.2
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
--.++|+|++-+|+|.+|+.|+..|.|++|.+.+|... ..+.+|-
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----------------------~v~~aHY------------ 123 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----------------------NVLSAHY------------ 123 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----------------------HHHHhhc------------
Confidence 34688999999999999999989999999999998843 5577887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +.|+.+|++|+.||.|.+|.+..-
T Consensus 124 Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l---------------------------------------------- 155 (476)
T KOG0646|consen 124 QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL---------------------------------------------- 155 (476)
T ss_pred cceeEEEE--eCCCcEEEecCCCccEEEEEEEee----------------------------------------------
Confidence 88999999 788999999999999999997542
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+..++. .++... ...|.-+|+++...+- ...|+++ .|.++++||+..+....
T Consensus 156 ------v~a~~~~~----------------~~p~~~-f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 156 ------VSADNDHS----------------VKPLHI-FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred ------cccccCCC----------------ccceee-eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 11111110 112222 3589999999887653 4566776 89999999999876554
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc--ceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 347 (515)
.+. ....+.+++.+|-+ +.++.|+.+|.|.+.++.+.......+..-..+........+.+|.+ +|+|
T Consensus 213 ti~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 213 TIT---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EEe---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 332 46779999999998 89999999999999888654321111111111112223456788888 9999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
++++-||.+|++|+. |.++|||+.+ .++++++..
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~ 317 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQT 317 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhh
Confidence 999999999999986 9999999986 788877763
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=169.90 Aligned_cols=268 Identities=18% Similarity=0.286 Sum_probs=185.4
Q ss_pred cccccccceEEEEECCCCC--eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 30 EEVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~--~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..++|.+.++.+.-++-|+ +.|+=+..|.|.||++.... ..+........+ ...+.+.++.+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk------- 211 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHK------- 211 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccC-------
Confidence 3467899999999888654 55555688999999986432 122222211111 3344455677787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..=++|+|+|...| .|++|..-+.|++|...++....-
T Consensus 212 -----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd------------------------------------ 249 (440)
T KOG0302|consen 212 -----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVD------------------------------------ 249 (440)
T ss_pred -----ccceeeeccccccc-ccccCccccceEeeeeccCceeec------------------------------------
Confidence 66799999986665 689998889999999887642110
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 265 (515)
. +. +.+|...|-.++|+|... .|++| .||+|+|||++.+
T Consensus 250 -------------------------------~-------~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 250 -------------------------------Q-------RP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred -------------------------------C-------cc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 0 00 246999999999999644 56667 7999999999977
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.+...+ ....|.+.|+-|.|+... .+|++|+.||+++|||+|+.+.- .+...++-|..+|
T Consensus 291 ~~~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-------------~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 291 PKKAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-------------QPVATFKYHKAPI 350 (440)
T ss_pred Ccccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-------------CcceeEEeccCCe
Confidence 544332 346799999999999998 59999999999999999986532 1223467788999
Q ss_pred eEEEEccC--CCEEEEEcCCeEEEEEeeCCCC---------------CeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 346 SDIKFARN--GRHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 346 ~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
+++.|+|. +-+.++|.|.+|.|||+..... +.+.+..|.+.. .+-.+.|+
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH 417 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWH 417 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------Hhhhheec
Confidence 99999993 3344446679999999975221 222333343321 13367888
Q ss_pred CCC-CEEEEecCCCcEEEE
Q 010206 409 GDG-GRVATGSYSNLFRVF 426 (515)
Q Consensus 409 ~~~-~~l~s~s~dg~i~iw 426 (515)
++- .+|++.+.|| +.||
T Consensus 418 ~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cCCCCeEEEecccc-eeEE
Confidence 864 4677777777 3444
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-24 Score=196.68 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=167.3
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|..+|.++.|+++..+|++| .+|+|++||++..+... ++.+|...+.++.|+|-+ .++++|+.|..+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~ 136 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------TLTGHLLNITSVDFHPYG-EFFASGSTDTDL 136 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------hhhccccCcceeeeccce-EEeccccccccc
Confidence 36899999999999999999999 89999999999766543 778999999999999998 889999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
++||.+...+.. .+.+|...+..+.|+|+|+++++|++ ..++|||+.. ++.+..|..|...
T Consensus 137 ~iwD~Rk~Gc~~----------------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~- 198 (825)
T KOG0267|consen 137 KIWDIRKKGCSH----------------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGK- 198 (825)
T ss_pred eehhhhccCcee----------------eecCCcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccccccccc-
Confidence 999998544321 24567788999999999999999876 9999999986 8999999988876
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+..+.|+|..-++++|+.|+++++||+++- .++...+.....|.+..|.|+++.+++|.....
T Consensus 199 --------------v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 199 --------------VQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred --------------ccccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 347889999999999999999999999976 444555666788999999999999999876643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-22 Score=162.41 Aligned_cols=308 Identities=14% Similarity=0.189 Sum_probs=198.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+++..-+. .++++++|+.||.|.+||++.........+-
T Consensus 44 GsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li------------------------------------- 85 (397)
T KOG4283|consen 44 GSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLI------------------------------------- 85 (397)
T ss_pred Cccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccce-------------------------------------
Confidence 88999999654 4689999999999999999864311110000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
-..+.+ ..+....+|...|.++.|-|-.. .|.++ -|.++++||.++.+....
T Consensus 86 -----------~k~~c~---------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~ 139 (397)
T KOG4283|consen 86 -----------AKHKCI---------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD 139 (397)
T ss_pred -----------eheeee---------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE
Confidence 000000 00111358889999999999544 45555 699999999998765432
Q ss_pred eecccCccccccCCceEEEEEecCC--CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
+ ...+.|++-+++|-. ..++|+|..+-.|++.|+..|... ..+.+|.+.|.++
T Consensus 140 F---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----------------H~LsGHr~~vlaV 194 (397)
T KOG4283|consen 140 F---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----------------HTLSGHRDGVLAV 194 (397)
T ss_pred e---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----------------eeeccccCceEEE
Confidence 2 135668888888743 157889999999999999998753 2378899999999
Q ss_pred EEccCCCEEEE-Ec-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.|+|...++++ |+ ||.|++||++....+...+..|....+.+.+. .......|+.++|+.|+.++++.+.|.++++|
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~-n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT-NTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc-cccccceeeeeeecccchhhhhccCccceEEe
Confidence 99998777654 65 59999999997567888888887544443331 11111236689999999999999999999999
Q ss_pred ecCCCCcceeeec--cCCCceeeEEE---CCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 427 GCSEGSAESTTLE--ASKNPMRRQVQ---TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 427 ~~~~~~~~~~~~~--~~~~~v~~~~~---~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
+..+|...+..+. .|.... ..++ +.+...++---.++.+.++.-.+.. .....-.|...|.+.++-|+-+.
T Consensus 274 n~~~G~ntl~~~g~~~~n~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs---~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 274 NMESGRNTLREFGPIIHNQTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS---FVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred ecccCcccccccccccccccc-cceEEEeecccceEEEEecCCeEEEEEccCce---EEEeeecccceeeEEeecCchhh
Confidence 9998854432221 111110 0111 1111111111122333331111100 11111235678899999999888
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
..++..|+ ++.|.
T Consensus 350 ~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWS 363 (397)
T ss_pred hhccccCCcccccc
Confidence 88877554 66553
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=177.27 Aligned_cols=313 Identities=13% Similarity=0.180 Sum_probs=219.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|.+|... +.|.+|++|+.||+|++|.+.++.+.....+.. .|. +++|.|.+..-.
T Consensus 401 g~Vr~iSvd--p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---------~I~-------~vaw~P~~~~~v----- 457 (733)
T KOG0650|consen 401 GLVRSISVD--PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---------EIR-------SVAWNPLSDLCV----- 457 (733)
T ss_pred CeEEEEEec--CCcceeeecCCCCcEEEEEeecceEEEEEeecc---------eeE-------EEEecCCCCcee-----
Confidence 899999995 457799999999999999999999888877652 333 788888776431
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-----CCCcEEEEeCCCCCc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEISNQ 267 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~ 267 (515)
++++.... +.|-+ .. .+ ..+..-+....|+++ .++.+..|.-....+
T Consensus 458 -----LAvA~~~~-~~ivn----p~-------------~G-----~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 458 -----LAVAVGEC-VLIVN----PI-------------FG-----DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred -----EEEEecCc-eEEeC----cc-------------cc-----chhhhcchhhhhhcCCCccCCcccceeechhhhhh
Confidence 12222222 22211 00 00 001111223334433 367788887653332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
...-+ ...-.|...|.++.|+..| .+|++...+ ..|.|+++...... .. |.-..+.
T Consensus 510 ~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P------------F~kskG~ 568 (733)
T KOG0650|consen 510 LEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP------------FRKSKGL 568 (733)
T ss_pred hccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc------------hhhcCCc
Confidence 21100 0223478889999999999 899887664 46888888665431 11 2223367
Q ss_pred eeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 345 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
|.++.|+|...+|+.++...|+|||+.. ...++.+...... +.+++++|.|..|+.|+.|+.+.
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeeeeecCCCCeEEEecCCCeeE
Confidence 9999999999999999999999999985 5555555433333 34899999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc---cc--cCCc-cccccCC----eeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA---LD--ANGN-AFDFSMK----LLHLA 494 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~---~~--~~~~-~~~~~~~----i~~~~ 494 (515)
.||+.-..+..+++..|...++.+++++.-+++++|+.||++.+..+.-... .. +..+ +.+|... |.++.
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 9999988778899999999999999999999999999999999832221110 01 1111 2356555 99999
Q ss_pred EcCCCCEEEEEcCC-cEEEE
Q 010206 495 WHPSENSIACAASN-SLYMY 513 (515)
Q Consensus 495 ~s~~~~~la~~~~~-~~~i~ 513 (515)
|||...+|.+++.+ .+.+|
T Consensus 713 wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCCCceEEecCCCceEEee
Confidence 99999999988766 57776
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=163.94 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=205.4
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc------ccccceeeeeeccCcCCeEEEEec------
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET------NLVAGCRRIYAHAHDYHINSISNN------ 243 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~------ 243 (515)
...|+|||.++ ++.+.+..+++|++ ..... .........+-......|...+|-
T Consensus 54 gckWSPDGSci------------L~~sedn~l~~~nl--P~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 54 GCKWSPDGSCI------------LSLSEDNCLNCWNL--PFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred cceeCCCCceE------------EeecccCeeeEEec--ChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 67899999999 99999999999983 32111 111111111112233456676764
Q ss_pred -CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC---ceEEEEEecCCCcEEEEEecCCeEEEEec-Cccc
Q 010206 244 -SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSA 317 (515)
Q Consensus 244 -~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~l~~~~~dg~i~~wd~-~~~~ 317 (515)
|+..+++++ .+.-|++||.-+++..... ....|.+ ...+++|+||| ..|+ ++..+.|++||+ |.|.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGR 191 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCC
Confidence 567777777 7999999999888754321 1122333 34699999999 6666 466789999999 6666
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
.+........+ -.+..+.|.+++|+| +...++.|+. .++-||.-.. ..++..+.+|.+.
T Consensus 192 ~c~vy~t~~~~---------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG--------- 252 (406)
T KOG2919|consen 192 DCPVYTTVTKG---------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG--------- 252 (406)
T ss_pred CCcchhhhhcc---------cccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC---------
Confidence 54332222221 123347799999999 5568888988 8888888875 8899999888866
Q ss_pred CCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCC-ceeeEEE--CCCCCeeEeecCCCeEEEecC
Q 010206 396 NDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~s~~~d~~v~l~~~ 471 (515)
|+.++|.++|+.|++|+ .|-.|..||++.....+..|+.|.. .-..|.| .|.+++|++|+.||.|++++.
T Consensus 253 ------vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 253 ------VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ------eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEec
Confidence 67999999999999998 4779999999988777788888876 4445555 689999999999999999554
Q ss_pred CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 472 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
..+-. .......+...++.++++|--.++|+++...++
T Consensus 327 k~~gn--~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 327 KDLGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CCCCC--cccccccccccccceecCcccceeeeccCceee
Confidence 44331 112233467889999999998888888765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-22 Score=172.12 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=179.2
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+.|.+++-+|.|.+|+.| -.+.|++|.+.++.... .+.+|-..|+++.|+-|| .+|++|+.||.|.+|+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWL 151 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEE
Confidence 4779999999999999999 89999999999887653 557899999999999999 9999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+-..-.. .. ...+.+...+..|.-+|+++...+- ...|++++ |.++++||+.. +..+.++.....
T Consensus 152 l~~lv~a------~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~s---- 219 (476)
T KOG0646|consen 152 LTDLVSA------DN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSS---- 219 (476)
T ss_pred EEeeccc------cc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCc----
Confidence 8543211 11 1144556678889999999998863 34677765 59999999997 777777654432
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---------------cceeeeccCCC--ceeeEEECC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------AESTTLEASKN--PMRRQVQTP 452 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---------------~~~~~~~~~~~--~v~~~~~~~ 452 (515)
+.+++.+|-++.++.|+.+|.|.+.++.... .....+.+|.+ +|++++++-
T Consensus 220 ------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 220 ------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 3589999999999999999999998775432 12355678887 999999999
Q ss_pred CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 453 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 453 ~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
||..|++|+.||.|++ |++.............++|+.+.+.|-.+
T Consensus 288 DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred CccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeecccc
Confidence 9999999999999999 33322112222222467888888866433
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=172.32 Aligned_cols=263 Identities=14% Similarity=0.169 Sum_probs=192.4
Q ss_pred ceeEEEEEeecCCCcEEEe--eeCCCeEEEEEccCC--eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 113 EKINKIRWCQSANSALYLL--STNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~--~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..+.++.|.. .. .|++ .+.|..+++|.-... +...+...... .-+ +++......++
T Consensus 35 pg~~s~~w~~--~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--------~~~-------Cv~~~s~S~y~-- 94 (673)
T KOG4378|consen 35 PGDFSFNWQR--RN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--------NAF-------CVACASQSLYE-- 94 (673)
T ss_pred Ccceeeeccc--cc-eEEEeecCCceeEEEecccCCCCccceeeccccc--------hHH-------HHhhhhcceee--
Confidence 4599999953 22 3444 467889999965432 22222111110 000 22232333444
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++|+..+.++||| +.. +....++++|...|+++.++-...+|+++ ..|.|.|..+.++..
T Consensus 95 ----------~sgG~~~~Vkiwd--l~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 95 ----------ISGGQSGCVKIWD--LRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred ----------eccCcCceeeehh--hHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 9999999999999 331 23334468999999999999999999998 799999999987654
Q ss_pred ccceecccCcccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. .+... ...|+-+.|+|....+|.+++.+|.|.+||+...... ......|..+..
T Consensus 156 tt--------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---------------~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 156 TT--------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---------------FHASEAHSAPCR 212 (673)
T ss_pred cc--------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---------------cchhhhccCCcC
Confidence 42 22222 3456789999988678889999999999999765432 123567889999
Q ss_pred EEEEccCCC-EEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 347 DIKFARNGR-HILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 347 ~~~~s~~~~-~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.++|+|... +|++ |-|..|.+||.+. .+...++...... ..++|+++|.+|+.|+..|.|.
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred cceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEE
Confidence 999999555 4555 4569999999985 6666666544332 3899999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
.||++..+..+.++.+|...|++++|-|..
T Consensus 276 ~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 276 AYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEecccCCCCceEeeecccceeEEEeeecc
Confidence 999998888889999999999999997764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-21 Score=164.36 Aligned_cols=260 Identities=14% Similarity=0.157 Sum_probs=172.1
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc--------c-cceecccCccccccCCceEEEEEecCCCcEE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ--------S-FNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~--------~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
+..|...|+++.|+|+|++|++| ++|.|.+|....-.. . .+.+.. ...+.+|...|+.++|+|++ .++
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~-~~l 138 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS-NFL 138 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCC-cee
Confidence 57899999999999999999999 899999997661100 0 000000 02567799999999999999 999
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCee
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVA 378 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~ 378 (515)
++++.|..+++||+..|.+.. .+.+|...+..++|.|.++++++- .+...+.+.+.. .+.++
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~----------------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~ 201 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLA----------------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIK 201 (434)
T ss_pred eeeeccceEEEEEeccceeEe----------------eccccccccceeecchhhhhhhhhccCcccceeeeee-eeeee
Confidence 999999999999999998642 256677889999999999999984 455566666653 22222
Q ss_pred eEe-----e--eccccccccccccCCCccc-eeeEEEcCCCCEEEEecC----C-----CcEEEEecCCCCcceeeeccC
Q 010206 379 TFQ-----V--HEHLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSY----S-----NLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 379 ~~~-----~--~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~s~----d-----g~i~iw~~~~~~~~~~~~~~~ 441 (515)
... . ..........+++++.+.. ...++|+|||.+|++.+. + +..++|+.+..+.....+...
T Consensus 202 ~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~ 281 (434)
T KOG1009|consen 202 RHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP 281 (434)
T ss_pred eeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC
Confidence 211 0 0111223334555554321 136899999999987542 2 344667666544444566666
Q ss_pred CCceeeEEECC------------------CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 442 KNPMRRQVQTP------------------SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 442 ~~~v~~~~~~~------------------~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
..+.-++.++| .+-.+|.++. ..|.++++....+ +....--|-..|++++|++||..|+
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~ 358 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLL 358 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccc--eEEEeeeeeeeecceeecCCCcEEE
Confidence 66666665554 2223333333 3444444444331 1111123678999999999999999
Q ss_pred EEcCCcEE
Q 010206 504 CAASNSLY 511 (515)
Q Consensus 504 ~~~~~~~~ 511 (515)
+++.||.+
T Consensus 359 vSS~DGyC 366 (434)
T KOG1009|consen 359 VSSTDGFC 366 (434)
T ss_pred EeccCCce
Confidence 99998865
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-22 Score=192.69 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=160.8
Q ss_pred ccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..|.+.|..+.|++.+. +|++| +||.|.|||++..+..+.. .-....+.|.+++|+..-.++|++++.+|.+
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 57899999999999766 88888 8999999999976655432 1122467899999998766899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEE--EcC--CeEEEEEeeCCCCCeeeEeee
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS--RDY--MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s--~~~--~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.|||+|..+.+.. +.. .+....+..++|+|+.. .|++ .+| -.|.+||++....+++++.+|
T Consensus 187 ~iWDlr~~~pii~----ls~----------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIK----LSD----------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCcccc----ccc----------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 9999998754322 110 11113478999999653 3333 344 789999999878889999888
Q ss_pred ccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS 461 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~ 461 (515)
... |.++.|++.+ .+|++++.|++|.+|+.+++ +.+..+....+.+..+.|.|..+ .++.++
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 755 5699999966 88999999999999999997 55577888888899999999988 778889
Q ss_pred CCCeEEE
Q 010206 462 LSGVVRR 468 (515)
Q Consensus 462 ~d~~v~l 468 (515)
.||.|.|
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 9999999
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=166.29 Aligned_cols=268 Identities=12% Similarity=0.091 Sum_probs=178.5
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
..+++++.|+.|++||+.+++.......... +. .+.++|+|+.+ ++++..++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---------~~-------~l~~~~dg~~l-----------~~~~~~~~~ 54 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---------PR-------GITLSKDGKLL-----------YVCASDSDT 54 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---------CC-------ceEECCCCCEE-----------EEEECCCCe
Confidence 4688889999999999998876655543211 11 68899999865 134567889
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+|| ....+ ....+ ..+ ..+..++|+|+++.++++ .++.|++||+++.+... .+. +..
T Consensus 55 v~~~d--~~~~~------~~~~~-~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~--------~~~-~~~ 115 (300)
T TIGR03866 55 IQVID--LATGE------VIGTL-PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA--------EIP-VGV 115 (300)
T ss_pred EEEEE--CCCCc------EEEec-cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe--------Eee-CCC
Confidence 99999 33321 11221 222 235678999999977654 58999999998654322 111 233
Q ss_pred ceEEEEEecCCCcEEEEEecCC-eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-c-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D- 361 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~- 361 (515)
.+.+++|+|++ .+++++..++ .+.+||.++++.... ... ......++|+|++++|+.+ .
T Consensus 116 ~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~----~~~-------------~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 116 EPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN----VLV-------------DQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred CcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE----EEc-------------CCCccEEEECCCCCEEEEEcCC
Confidence 46789999999 7888887765 567789877653211 110 1235678999999988654 3
Q ss_pred CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE-ecCCCcEEEEecCCCCcceeeecc
Q 010206 362 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 362 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
++.|++||+.+ ++.+..+..+...... ... ....++|+|++++++. .+.++.+.+||+++++ ....+ .
T Consensus 178 ~~~v~i~d~~~-~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-~~~~~-~ 246 (300)
T TIGR03866 178 GGTVSVIDVAT-RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-VLDYL-L 246 (300)
T ss_pred CCEEEEEEcCc-ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCc-EEEEE-E
Confidence 49999999986 6665555432211000 000 0126889999998654 4556789999998763 33333 2
Q ss_pred CCCceeeEEECCCCCeeEee-cCCCeEEEe
Q 010206 441 SKNPMRRQVQTPSRPSRPLG-SLSGVVRRV 469 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~-~~d~~v~l~ 469 (515)
+...+..++|+|++++|+++ ..++.|+++
T Consensus 247 ~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 247 VGQRVWQLAFTPDEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred eCCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence 34578899999999999876 468999993
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=170.34 Aligned_cols=412 Identities=14% Similarity=0.159 Sum_probs=242.4
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 39 ~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
....||+|+++++... +..|.||...+++.+ ..+..|. .++..+
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~ 63 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECI-----------------------TSLEDHT------------APLTSV 63 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhh-----------------------hhccccc------------Ccccee
Confidence 3457899999888765 558999999998854 5677887 889999
Q ss_pred EEeecCCC-cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCC-----C-C-Ccc-CCCCcCC----CceeecCCCc
Q 010206 119 RWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-----N-G-PIF-GSHVSAI----PKSYMANGGC 185 (515)
Q Consensus 119 ~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~-~-~v~-~~~~~~~----~~~~~~~g~~ 185 (515)
.+.|++.. .++++++.||.|++||...+.+.+....+.+...... . . .++ +.....+ +...+-.++.
T Consensus 64 ~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~ 143 (792)
T KOG1963|consen 64 IVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSR 143 (792)
T ss_pred eecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceee
Confidence 99887664 5778899999999999999988877665544311000 0 0 000 0000000 0000011111
Q ss_pred ccccc-ccCCCC----------CCCCCC-------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 186 GERNF-GCASND----------SSFPPG-------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 186 l~~~~-~~~~~~----------~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
+.... .....| ++...+ .+..+.+|++ . ........+.....|...+++.+++|.++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v--~---~~~~~~~~~~~~~~Htf~~t~~~~spn~~ 218 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV--P---KHTKHTSSRDITVHHTFNITCVALSPNER 218 (792)
T ss_pred eEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe--c---ccceeeccchhhhhhcccceeEEeccccc
Confidence 10000 000000 111111 1223344441 1 11111222222246777789999999999
Q ss_pred EEEEe-CCCcEEEEeCCC-CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 248 TFISA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
+++++ .||.|.+|.--. ..... .+..+..|...|.+++|+++| .+|++|+..+.+.+|.+.+++.
T Consensus 219 ~~Aa~d~dGrI~vw~d~~~~~~~~-----t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k------- 285 (792)
T KOG1963|consen 219 YLAAGDSDGRILVWRDFGSSDDSE-----TCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK------- 285 (792)
T ss_pred eEEEeccCCcEEEEeccccccccc-----cceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-------
Confidence 99999 799999996432 11111 113567899999999999999 8999999999999999998762
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccc-----------------c
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHL-----------------R 387 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~-----------------~ 387 (515)
.++.-..++|..+.+|||+.+.+. ..|+.|.+..... .....++.+-... .
T Consensus 286 ----------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 286 ----------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred ----------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEc
Confidence 223444478999999999988776 4568888887632 1111111111100 0
Q ss_pred c--------------cccccccCCCcc------------------ceeeEEEcCCCCEEEEec--------CCC--cEEE
Q 010206 388 P--------------KLCDLYENDSIF------------------DKFECCLSGDGGRVATGS--------YSN--LFRV 425 (515)
Q Consensus 388 ~--------------~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~s~s--------~dg--~i~i 425 (515)
+ +.-+++....++ .++.++.+..|.+++|.- .|| .+++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 0 000111122221 123344444566666643 122 4566
Q ss_pred EecCCCCcc--e--eeeccCCCceeeEEEC-CCCC-eeEeecCCCeEEE--ecC-CCCCccccCC----ccccccCCeeE
Q 010206 426 FGCSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--VKG-ADNSALDANG----NAFDFSMKLLH 492 (515)
Q Consensus 426 w~~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~s~~~d~~v~l--~~~-~~~~~~~~~~----~~~~~~~~i~~ 492 (515)
|......+. + .....|...+.+.++. +... .+++++.||.+++ +.+ .+..+..-.. ....|..++.+
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a 514 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA 514 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence 765433211 1 2224676666555554 3333 7899999999999 211 1111111111 11136789999
Q ss_pred EEEcCCCCEEEEEcCCcEEEEeC
Q 010206 493 LAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
++|+.||..||++.++.+.+|..
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecC
Confidence 99999999999999999999973
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=173.84 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=189.7
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...-|...|..+.|.|....|++++.|.++++||+.+.+..+ ...+-+|.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G---------------------~~~~~GH~--------- 144 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG---------------------GRLNLGHT--------- 144 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec---------------------ceeecccc---------
Confidence 346799999999999977789999999999999999887542 12367787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|.|... ..|++|+.||.|.|||++.............
T Consensus 145 ---~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~-------------------------------- 188 (720)
T KOG0321|consen 145 ---GSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNR-------------------------------- 188 (720)
T ss_pred ---cccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhh--------------------------------
Confidence 8999999987544 5899999999999999986543222211100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE---EEecCCCCEEEEe--CCCcEEEEeCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS---ISNNSDGETFISA--DDLRINLWNLEI 264 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~--~d~~i~iwd~~~ 264 (515)
+.+...+. . .......+..+. -..+...|.+ +.+..|...|+++ .|+.|++||+++
T Consensus 189 ---------~~~~~n~~-p--------tpskp~~kr~~k-~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk 249 (720)
T KOG0321|consen 189 ---------IYGRHNTA-P--------TPSKPLKKRIRK-WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK 249 (720)
T ss_pred ---------hhccccCC-C--------CCCchhhccccc-cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence 00000000 0 000000000000 1344444544 5556788888886 499999999997
Q ss_pred CCcccceecccCcccccc---CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 265 SNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~---~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
....++.-......+..| .-.+.++.....| .+|++.+.|+.|.+|++....... ...+.+...
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~sP--~~~~sg~~~---------- 316 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSISP--VAEFSGKLN---------- 316 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcCc--hhhccCccc----------
Confidence 765543221111122233 3457788888888 555555669999999998754311 111111100
Q ss_pred ccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecC
Q 010206 342 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSY 419 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~ 419 (515)
..-...-..+||+.++++|+. ...++|.+.+...+...+.+|... |+.++|.|... -++++++
T Consensus 317 ~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e---------------Vt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 317 SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE---------------VTTVRWLPSATTPVATCSD 381 (720)
T ss_pred ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE---------------EEEEeeccccCCCceeecc
Confidence 011122346899999999975 999999999877777888888755 67899988433 3777799
Q ss_pred CCcEEEEecCCC
Q 010206 420 SNLFRVFGCSEG 431 (515)
Q Consensus 420 dg~i~iw~~~~~ 431 (515)
|.++++|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 999999999776
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=175.72 Aligned_cols=239 Identities=17% Similarity=0.227 Sum_probs=186.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..|....+.++|.|+|++|+++ .||.|++|+......... .+.-+...|.+++... ..|++|+.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------TIDISGELVSSIACYS---NHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------hhhccCceeEEEeecc---cceEEeeccceEE
Confidence 4788889999999999999998 899999999876532222 3333677788887654 5799999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+|.+..+..-. . +.--.-++++++|+-+|++++.|++ -.|++-++.. ......+.+|...
T Consensus 80 ~y~fps~~~~~-i---------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~ap-- 140 (933)
T KOG1274|consen 80 RYKFPSGEEDT-I---------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAP-- 140 (933)
T ss_pred EeeCCCCCccc-e---------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCc--
Confidence 99998875311 1 1112257999999999999999876 8999999985 7778889999877
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-------cC-CCceeeEEECCCCCeeEee
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-------AS-KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~~~l~s~ 460 (515)
|.++.|+|++++||+.+-||.|++|++.++. +..++. .- ...+..++|+|++..++..
T Consensus 141 -------------Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 141 -------------VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred -------------eeeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 5599999999999999999999999999873 333333 12 4567889999999999999
Q ss_pred cCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 461 SLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 461 ~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
+.|+.|++ .++|+... .+... .+...+..++|+|.|+|||+++ ++++.||+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f-~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQF-KLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccCCeEEEEccCCceehe-eeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 99999999 55665542 11111 2344599999999999999888 455999973
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=153.68 Aligned_cols=281 Identities=18% Similarity=0.236 Sum_probs=196.7
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
-+++.| +..|.+|++|+.||.|.+||+.+.....+
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~------------------------------------------- 60 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARM------------------------------------------- 60 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchhhh-------------------------------------------
Confidence 688899 45677999999999999999887541111
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+.+|..+|.+++|+++|+.|+++ .|..|.+||+..+....++.
T Consensus 61 -----------------------------------lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 61 -----------------------------------LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred -----------------------------------hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 46889999999999999999998 89999999999888665432
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
...+|..+.|+|...+.++..-.+..-.+-++..... ..+.. ..+... ...-.+..|.+.
T Consensus 105 --------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp~-d~d~dl------n~sas~~~fdr~ 164 (405)
T KOG1273|consen 105 --------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLPK-DDDGDL------NSSASHGVFDRR 164 (405)
T ss_pred --------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eeccC-CCcccc------ccccccccccCC
Confidence 5788999999997656666555555556666654321 11111 111101 012233468899
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC-
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG- 431 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~- 431 (515)
|+++++|.. |.+.++|..+ .+++..++.... ..|-++.++..|++|+..+.|..||.|+++.-
T Consensus 165 g~yIitGtsKGkllv~~a~t-~e~vas~rits~--------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAET-LECVASFRITSV--------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred CCEEEEecCcceEEEEecch-heeeeeeeechh--------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhc
Confidence 999999987 9999999997 677776664431 11347899999999999999999999998731
Q ss_pred -----Ccce--eeec--cCCCceeeEEECCCCCeeEeecCC-CeEEEecCCCCCccccCCcccccc-CCeeEEEEcCCCC
Q 010206 432 -----SAES--TTLE--ASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSEN 500 (515)
Q Consensus 432 -----~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 500 (515)
+.+. +.++ ....+...++|+.+|.|+..++.- -.+++++ ..-..+...+.+.+ ....++.|+|-..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE---~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE---KSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe---cCCcceeeeecCCchhheeeccccccee
Confidence 1111 1221 234456788999999999887743 3455522 11111221222333 4578999999999
Q ss_pred EEEEEcCCcEEEEe
Q 010206 501 SIACAASNSLYMYY 514 (515)
Q Consensus 501 ~la~~~~~~~~i~~ 514 (515)
.|++-..+.+++|+
T Consensus 307 ~i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 307 IIASIASGVVYIWA 320 (405)
T ss_pred eeeeccCCceEEEE
Confidence 99988888899996
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=159.13 Aligned_cols=318 Identities=17% Similarity=0.206 Sum_probs=207.9
Q ss_pred cccccceEEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 32 VQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
..|..+|..++|++ ....+|+.+.+ ++.+|........ +.+..+...
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~------- 86 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADE------- 86 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCC-------
Confidence 46889999999996 33467776644 7999997644311 111111111
Q ss_pred ccccccceeEEEEEeecCC--CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 107 KSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
++++....++|+-..+ +.++++++.-|.|++.|+.++++...
T Consensus 87 ---d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~--------------------------------- 130 (385)
T KOG1034|consen 87 ---DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN--------------------------------- 130 (385)
T ss_pred ---CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc---------------------------------
Confidence 1226778888865433 35777788889999999877653221
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 262 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 262 (515)
+.+|...|+.+.+.|+. ++++++ .|.+|++|++
T Consensus 131 ---------------------------------------------~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 131 ---------------------------------------------YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred ---------------------------------------------eeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 35888999999999975 556666 7999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc--cceeeecc----CCCccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH--SKLFEEQE----APGTRS 336 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~----~~~~~~ 336 (515)
++.....-+ ..+++|.+.|.++.|++++ ..|++++.|..+++|++...+..... ...+.... .+.+..
T Consensus 166 ~~~~Cv~Vf-----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~ 239 (385)
T KOG1034|consen 166 QTDVCVAVF-----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKT 239 (385)
T ss_pred cCCeEEEEe-----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccc
Confidence 977654332 2678999999999999999 89999999999999999854322111 11111111 111111
Q ss_pred ------cccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee--eEEE
Q 010206 337 ------FFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF--ECCL 407 (515)
Q Consensus 337 ------~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~ 407 (515)
.-.-|...|.|+.|- |.++++-+ ++.|..|....-.+.+......+.....+..+.-.. -+++ ..+|
T Consensus 240 ~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~ 315 (385)
T KOG1034|consen 240 HFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAF 315 (385)
T ss_pred ccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEee
Confidence 123477888888887 67888844 589999987321222111111111111011110001 1133 3566
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcce-eeec--cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|-+++||.|...|.|++||++...... .++. .....|+..+|+.++.+|+....|++|--
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 7778899999999999999999765533 2332 33467889999999999999999998764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=159.69 Aligned_cols=335 Identities=13% Similarity=0.177 Sum_probs=213.2
Q ss_pred cccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 34 EVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 34 h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
...+|..+.|.++.. .||||+.|..|+||.+...+..++ .+...+...+..|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------ 65 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------ 65 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------
Confidence 346899999999766 999999999999999876654311 02345667788888
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+++.| +++|+.|++|+.+|.|.+|....-... .. +. .
T Consensus 66 ~aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---------------------------d~-e------- 105 (434)
T KOG1009|consen 66 RAVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---------------------------DT-E------- 105 (434)
T ss_pred ceeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---------------------------cc-h-------
Confidence 88999999 556779999999999999987651110 00 00 0
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.+.....-..+..+.+|...|..++|+|++.+++++ -|..+++||+..+....
T Consensus 106 ------------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-- 159 (434)
T KOG1009|consen 106 ------------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-- 159 (434)
T ss_pred ------------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe--
Confidence 000000111222257899999999999999999999 79999999999876542
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--e--eeccCCCc-ccccc--ccccc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--F--EEQEAPGT-RSFFT--EIIAS 344 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~--~~~~~~~~-~~~~~--~~~~~ 344 (515)
.+..|...+..++|.|-+ +++++-+.|+..+.+.+...+........ . ...+.+.. ...+. ....-
T Consensus 160 ------~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksF 232 (434)
T KOG1009|consen 160 ------ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSF 232 (434)
T ss_pred ------eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhh
Confidence 567799999999999998 89999999987777777654432221100 0 00011100 00010 01123
Q ss_pred eeEEEEccCCCEEEEEc-----CCe-----EEEEEeeCCCCCeeeEeeeccccc--cccccccCCCccceeeEEEc-CCC
Q 010206 345 ISDIKFARNGRHILSRD-----YMT-----LKLWDINMDSGPVATFQVHEHLRP--KLCDLYENDSIFDKFECCLS-GDG 411 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-----~~~-----i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s-~~~ 411 (515)
...++|+|+|.+|++.+ .+. .++|+-..-.++...+........ +.+.+|-.=+.......-|+ |-+
T Consensus 233 FrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 233 FRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred hhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 56688999999999732 122 344443322333333333221110 00000000000000000111 222
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
-.+|.++ .+.|++||.++-.+....-.-|..+++.++|+++|.+|+..|.||...+
T Consensus 313 lvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 313 LVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 2344444 4689999999876666777889999999999999999999999998877
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=157.67 Aligned_cols=286 Identities=17% Similarity=0.252 Sum_probs=191.0
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCc
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 127 (515)
..+|++..+|.|++||..+++ .+..|.++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 578899999999999998866 346677887 779999997633445
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
.+.+++.||+|++||++...........
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 7899999999999999876533322211
Q ss_pred EeeeeeecccccccccceeeeeeccCc-CCeEEEEecCCCCEEEEe-----CCCcEEEEeCCCCCcccceecccCccccc
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMED 281 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 281 (515)
.+. .+..+++.+..++.+++| .+..|.+||++..++.... -.+.
T Consensus 114 ------------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eS 163 (376)
T KOG1188|consen 114 ------------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNES 163 (376)
T ss_pred ------------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhh
Confidence 111 344566666677777776 3788999999988764332 3467
Q ss_pred cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEE-
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILS- 359 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s- 359 (515)
|.+.|++++|+|..+++|++|+.||.|.+||+.....-..... ...|.+.|.++.|..++ +.|.+
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-------------viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-------------VINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-------------hhcccceeeeeeeecCCcceEEEE
Confidence 9999999999999999999999999999999976432111111 22344679999999876 23444
Q ss_pred EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecC-CCcEEEEecCC---C--C
Q 010206 360 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCSE---G--S 432 (515)
Q Consensus 360 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~-dg~i~iw~~~~---~--~ 432 (515)
....+..+|++.. +.+...+...........+.-..+. +.. +.+| +....+.++. -|+..++-+.. + .
T Consensus 231 TH~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~~~~dY---~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~ 305 (376)
T KOG1188|consen 231 THMETFAIYELED-GSEETWLENPDVSADDLRKEDNCDY---VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL 305 (376)
T ss_pred EccCceeEEEccC-CChhhcccCccchhhhHHhhhhhhh---eee-cccCCCcceEEEeccccCceeEEEeeeccccccc
Confidence 4448999999985 5544443322111110110000011 011 1223 3444444443 56666665542 2 1
Q ss_pred cceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 433 AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 433 ~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.....+++ |..-|+.+.|...+..+.+|++||.+.+
T Consensus 306 ~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 306 TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred CccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 22355666 6778889999888899999999999999
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=149.47 Aligned_cols=271 Identities=13% Similarity=0.220 Sum_probs=182.0
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~ 307 (515)
..+|..-|.++.|++.|+.+++| .|++|+|||.+......... ...+.|.+.|..+.|.+ .-++.+|+++.|++
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 36888999999999999999999 89999999986554433321 25678999999999954 32389999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc--CCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeec
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.||.=.....- .+.+.+ .....+....+.|+++.|.| -|-.|++++ ||.+|||+.-. ...+.......
T Consensus 85 v~iWEE~~~~~~-~~~~~W------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d-p~nLs~W~Lq~ 156 (361)
T KOG2445|consen 85 VSIWEEQEKSEE-AHGRRW------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD-PMNLSQWTLQH 156 (361)
T ss_pred eeeeeecccccc-ccccee------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC-ccccccchhhh
Confidence 999985322110 001111 11223444557899999999 577788865 59999999764 22222222211
Q ss_pred cccccccccccCCCccceeeEEEcCC---CCEEEEecCC-----CcEEEEecCCCCc---ceeeeccCCCceeeEEECCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~s~d-----g~i~iw~~~~~~~---~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....+... ...-..-.++.|+|. ..+||.|+.+ +.++||....... ...+|.+|.+||+.++|.|+
T Consensus 157 Ei~~~~~pp--~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 157 EIQNVIDPP--GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhccCCc--ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 111000000 011112348888874 4578888766 5899998876542 23678899999999999996
Q ss_pred C----CeeEeecCCCeEEEecCCC----------CC---ccccC----CccccccCCeeEEEEcCCCCEEEEEcCCc-EE
Q 010206 454 R----PSRPLGSLSGVVRRVKGAD----------NS---ALDAN----GNAFDFSMKLLHLAWHPSENSIACAASNS-LY 511 (515)
Q Consensus 454 ~----~~l~s~~~d~~v~l~~~~~----------~~---~~~~~----~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~ 511 (515)
- ..||+++.|| |+|++-.. .. ...+. ...-+|.+.|..+.|+-.|..|+++++|| +.
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 3 4689999999 88711110 00 00111 22337899999999999999999777665 88
Q ss_pred EEeC
Q 010206 512 MYYA 515 (515)
Q Consensus 512 i~~~ 515 (515)
+|.+
T Consensus 314 LWka 317 (361)
T KOG2445|consen 314 LWKA 317 (361)
T ss_pred ehhh
Confidence 8854
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=162.61 Aligned_cols=251 Identities=16% Similarity=0.199 Sum_probs=183.9
Q ss_pred ccCcCCeEEEEecCCCC--EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 231 HAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
..+..+|.+++|+|... ++++| ..|.|-+||+.+.++...-+ ..+..|..+|.++.|+|.+...+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 56779999999999654 56667 69999999996443322111 1456799999999999988889999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|++-|++....- .+...+ .....+.++.|+.+.+.++.++. |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~e--~v~s~~------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISE--EVLSLD------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhH--HHhhcC------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999876421 111111 11246788899888777877776 999999999977767777777653
Q ss_pred cccccccccCCCccceeeEEEcCCCC-EEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++++|... +|+|+|.|++++|||++.-... ....-.|..+|.+..|+|++-.|++.+.
T Consensus 325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 45899999654 6899999999999999864222 2455689999999999999999999999
Q ss_pred CCeEEEecCCCCCccccCCcccccc------CCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 463 SGVVRRVKGADNSALDANGNAFDFS------MKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 463 d~~v~l~~~~~~~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
|..||++++.....-......+.|. -.....+|.|+.+++++|. ...|-||+
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 9999996663211101111111222 2356789999999999986 33354543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=155.02 Aligned_cols=309 Identities=13% Similarity=0.103 Sum_probs=212.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.++.||.++++||+|+.|-.++||++...-.... | +. ..+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~---------------~--KP-I~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT---------------P--KP-IGVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC---------------C--CC-ceeccCc----------
Confidence 458999999999999999999999999999999864321100 0 00 1122221
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
|...|.+++| ......+++|..+++|.+-|+++.+...+...+
T Consensus 104 H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~----------------------------------- 146 (609)
T KOG4227|consen 104 HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANEN----------------------------------- 146 (609)
T ss_pred cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeeccc-----------------------------------
Confidence 1267999999 555679999999999999999987644332211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
...+.|..+..+|..+.|++. .++.|.+||.+......
T Consensus 147 -----------------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 147 -----------------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred -----------------------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 123578888899988888887 89999999998665443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+ -........+++.|+|..+.+|++.+..+-+.+||.+...... ....+... +......-+++.
T Consensus 186 ~~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~---~~~~~~~~------L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 186 SLV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV---YQRSMFKG------LPQENTEWMGSL 251 (609)
T ss_pred cee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH---Hhhhcccc------Ccccchhhhhee
Confidence 332 1222345678999999999999999999999999998754211 11111000 111112346789
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|.|..+.+--. ..-.+||+.. +.+..++...... -|-+ +-.+-+++|-.|-. +++|+.+=.|++|.+
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S--~R~~V~k~D~N~~-----GY~N--~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFIS--QRCFVLKSDHNPN-----GYCN--IKTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeec--ccceeEeccCCCC-----ccee--eeeeeeeeeeccee-eeccCcccceEEEec
Confidence 9999998887554 4556788874 2223333221110 0000 01133788876544 999999999999998
Q ss_pred CCC----C------------------cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 429 SEG----S------------------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 429 ~~~----~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
... + .....|++|.+-++.+.|+|-...|++.+....++|+
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecc
Confidence 642 1 1235688999999999999999999999999999993
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=168.88 Aligned_cols=147 Identities=10% Similarity=0.178 Sum_probs=110.1
Q ss_pred cceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCC------CCeeeEeeeccccccccccccCCCccceeeEEEcC-CCCE
Q 010206 343 ASISDIKFAR-NGRHILSRDY-MTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGR 413 (515)
Q Consensus 343 ~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 413 (515)
..|+.+.|.| |...|+.+.| |.|++|.+..++ .+...+..|... |+++.|+| -...
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadv 692 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADV 692 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhH
Confidence 4689999999 6677777655 999999997633 234555666544 55999999 4568
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEE
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 493 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~ 493 (515)
|++++.|-+|++||+.+. .+...|.+|.+.|-.++|+|+|+.+|+.+.||++++++-.+....-..+.. .-...-..+
T Consensus 693 La~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-pvgtRgARi 770 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-PVGTRGARI 770 (1012)
T ss_pred hhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-CccCcceeE
Confidence 999999999999999987 566899999999999999999999999999999999221111100011100 012344688
Q ss_pred EEcCCCCEEEEEc
Q 010206 494 AWHPSENSIACAA 506 (515)
Q Consensus 494 ~~s~~~~~la~~~ 506 (515)
.|.-||.++++.+
T Consensus 771 ~wacdgr~viv~G 783 (1012)
T KOG1445|consen 771 LWACDGRIVIVVG 783 (1012)
T ss_pred EEEecCcEEEEec
Confidence 9999999998775
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=165.72 Aligned_cols=270 Identities=16% Similarity=0.248 Sum_probs=201.5
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
.|..++|.|||..|+.+. +.++.|||..++.. +.++.+|. ..|+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~l-----------------------lqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTL-----------------------LQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccc-----------------------cccccccc------------ceEE
Confidence 899999999999888875 44799999987764 46789998 8999
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+++| +.||+.+++|+.|+.|.+|+.+-.-.
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG~------------------------------------------------ 87 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEGI------------------------------------------------ 87 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEecccccce------------------------------------------------
Confidence 9999 67899999999999999997542210
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccC
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
+ ...|...|.|+.|+|-.+.|++++=...-+|.........
T Consensus 88 ----------L----------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K------- 128 (1081)
T KOG1538|consen 88 ----------L----------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK------- 128 (1081)
T ss_pred ----------e----------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-------
Confidence 0 1368899999999999999999855556789876432111
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-- 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-- 354 (515)
......+.+++|..|| ++++.|-.+|+|.+-+- +++.. ...+. -.+..++|.+++|+|..
T Consensus 129 ---~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk-~gEek----~~I~R---------pgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 129 ---HKSSSRIICCSWTNDG-QYLALGMFNGTISIRNK-NGEEK----VKIER---------PGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred ---hhhheeEEEeeecCCC-cEEEEeccCceEEeecC-CCCcc----eEEeC---------CCCCCCCceEEEecCCCCC
Confidence 1235678899999999 99999999999998753 22211 11111 12334789999999842
Q ss_pred ---CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 355 ---RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 355 ---~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..+++.+. .++.++.+. ++.+..-+.-. ++-.++.+-++|.++..|+.|+.+++|-.+
T Consensus 191 G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~- 252 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD- 252 (1081)
T ss_pred CccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcEEEEccCCCceEEEeec-
Confidence 35556665 677777775 33322111000 111278888999999999999999999866
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.++......|+.++..|++++++.|+.||++--
T Consensus 253 -GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 253 -GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred -CeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 3566677777888999999999999999999999875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-19 Score=146.14 Aligned_cols=208 Identities=13% Similarity=0.237 Sum_probs=152.7
Q ss_pred cCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
.+..+++++.|+. +.+++.++ -|-+..|||++++..-. + + ..+-.|...|+.|+|...+..+|++.+.||.+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-v---k-TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvR 222 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-V---K-TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVR 222 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-e---e-eEEEecCcceeEEEeccCccceEEEecCCCcEE
Confidence 4567899999987 56666676 69999999999762210 0 0 155679999999999998778999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+||+|...-. .-.++.+.. ..+...++|++ |-+++|+ +-+ ..|.|.|++.+..++.++..|...
T Consensus 223 mFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~ 289 (364)
T KOG0290|consen 223 MFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS 289 (364)
T ss_pred EEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc
Confidence 9999986421 112232211 25788899997 5677887 445 899999999999999999999987
Q ss_pred cccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+ ..++|.|.. ..|+|+++|..+.+||+..-.. +.-.+|+ |+
T Consensus 290 V---------------NgIaWaPhS~~hictaGDD~qaliWDl~q~~~-----~~~~dPi-----------la------- 331 (364)
T KOG0290|consen 290 V---------------NGIAWAPHSSSHICTAGDDCQALIWDLQQMPR-----ENGEDPI-----------LA------- 331 (364)
T ss_pred c---------------cceEecCCCCceeeecCCcceEEEEecccccc-----cCCCCch-----------hh-------
Confidence 4 489999965 5799999999999999985411 0001111 10
Q ss_pred EEEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEcCCcEEEE
Q 010206 466 VRRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAASNSLYMY 513 (515)
Q Consensus 466 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~~~~~i~ 513 (515)
..-++.|+.+.|++ ...+|+++..+.+-+.
T Consensus 332 ------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 ------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred ------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 01257889999995 4678998888776553
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.3e-20 Score=158.94 Aligned_cols=269 Identities=16% Similarity=0.201 Sum_probs=178.5
Q ss_pred ceEEEEECC-------CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 37 IISAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 37 ~v~~v~~s~-------~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
.-.|++|-. -|+++|.|+.|..|.|||+.-...+-++. .|........ ....+....-.+|.
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~-~LGs~~sk~~-~k~~k~~~~~~gHT--------- 243 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCV-TLGSKASKKK-KKKGKRSNSASGHT--------- 243 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccce-eechhhhhhh-hhhcccccccccch---------
Confidence 336666643 36899999999999999986332210000 0000000000 00000001123455
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.|+. .....|++|+.|.+|++||+.+++....
T Consensus 244 ---davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s-------------------------------------- 281 (463)
T KOG0270|consen 244 ---DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS-------------------------------------- 281 (463)
T ss_pred ---HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee--------------------------------------
Confidence 7888999864 3346899999999999999999875433
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+..|...|.++.|+|. ...|++| .|++|.+.|.+....
T Consensus 282 ----------------------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 282 ----------------------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN 321 (463)
T ss_pred ----------------------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc
Confidence 2457789999999985 6677788 799999999996443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
....+ ...+.|-.++|.|..+..++++..||+++-+|+|+.... ...+..|.++|.+
T Consensus 322 s~~~w--------k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---------------vwt~~AHd~~ISg 378 (463)
T KOG0270|consen 322 SGKEW--------KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---------------VWTLKAHDDEISG 378 (463)
T ss_pred cCceE--------EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---------------eeEEEeccCCcce
Confidence 32211 136779999999988788999999999999999986421 1225778899999
Q ss_pred EEEccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCCcEE
Q 010206 348 IKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 424 (515)
Q Consensus 348 ~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i~ 424 (515)
+++++.-. ++++++ ++.+++|++.. ..+ .....|.-...++ .+.++.|+-. +|+.|+..+.++
T Consensus 379 l~~n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 379 LSVNIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred EEecCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEE
Confidence 99998544 455555 59999999974 222 2222232222111 2566666544 577888888999
Q ss_pred EEecCCCCcce
Q 010206 425 VFGCSEGSAES 435 (515)
Q Consensus 425 iw~~~~~~~~~ 435 (515)
|||+.+.....
T Consensus 445 vwd~~~~~~V~ 455 (463)
T KOG0270|consen 445 VWDIFTNSPVR 455 (463)
T ss_pred EeecccChhHH
Confidence 99998775443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=181.42 Aligned_cols=299 Identities=14% Similarity=0.112 Sum_probs=204.6
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE----EEE
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET----FIS 251 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~s 251 (515)
.++|+|++..+ +..+...+.+-.+-+.+.++.||. +.........+.... ..-..+.+.++|.+.+.. |+.
T Consensus 11 ~~awSp~~~~~-laagt~aq~~D~sfst~~slEife--ld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 11 TFAWSPASPPL-LAAGTAAQQFDASFSTSASLEIFE--LDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred eEEecCCCchh-hHHHhhhhccccccccccccceee--ecccCcccccccccc--ccccccceeeeecccCCCccceeec
Confidence 56889988522 222222223333335667777776 333322211111111 123466789999887665 666
Q ss_pred e-CCCcEEEEeCCCC--CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 252 A-DDLRINLWNLEIS--NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
| +||.|.+||.... .....++ .+...|.+.|..+.|++..+++||+|+.||.|.|||+.+.+.... +..
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~l----a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~----~~~ 157 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVL----ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT----PGS 157 (1049)
T ss_pred cccCCceEEecchhhccCcchHHH----hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC----CCC
Confidence 6 8999999998752 2222211 256779999999999999877999999999999999987543211 110
Q ss_pred ccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..-.+.|.+++|+. ....|++++. |++.|||++. .+++-.+..+.... .+..++
T Consensus 158 ----------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~-------------~~S~l~ 213 (1049)
T KOG0307|consen 158 ----------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRM-------------HCSVLA 213 (1049)
T ss_pred ----------CCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCcc-------------ceeeee
Confidence 11125799999997 4556777776 8999999997 67766666555421 133799
Q ss_pred EcCCCC-EEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEEEecCCCCCccccCC
Q 010206 407 LSGDGG-RVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANG 481 (515)
Q Consensus 407 ~s~~~~-~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~~ 481 (515)
|+|+.- .|++++.|. .|.+||++......+++++|...+.++.|.+.+ .+|+|++.|+.+.. |+....+...
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~---wN~~tgEvl~ 290 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIIC---WNPNTGEVLG 290 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeE---ecCCCceEee
Confidence 999864 466666543 789999998777778999999999999999877 88999999999998 4444334444
Q ss_pred ccccccCCeeEEEEcCCCC-EEEEEc-CCcEEEEe
Q 010206 482 NAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 514 (515)
Q Consensus 482 ~~~~~~~~i~~~~~s~~~~-~la~~~-~~~~~i~~ 514 (515)
+.-.....+..+.|.|... .+++++ ++.+-||+
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 4444467899999999987 666666 45566665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=145.09 Aligned_cols=300 Identities=10% Similarity=0.123 Sum_probs=194.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+|...|+|+.|..+++ |.+|..-|.|++|++.+.+.. ..++.+. .
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g-----------~ 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFG-----------R 56 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccc-----------------------hhhhhhc-----------c
Confidence 7999999999998875 889999999999999887643 2334222 1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc-ccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-ERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l-~~~~~ 191 (515)
..|+.+.-.| +..|.+-+.|..+.+|++..+....+...-.+.. .....++.+.++.. +.+..
T Consensus 57 ~~it~lq~~p---~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nsl-------------gFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQSIP---NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSL-------------GFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceeecC---CcchhhcCCCceEEEEEccCcceEEEeeeecccc-------------ccccceeccCCCcchhheec
Confidence 5678777754 2479999999999999999876555443222110 00122233333322 00000
Q ss_pred c-C-CCCC-CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCC--EEEEe-CCCcEEEEeCCC
Q 010206 192 C-A-SNDS-SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE--TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 192 ~-~-~~~~-~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~s~-~d~~i~iwd~~~ 264 (515)
. . +.+. .--++..-.+++-| . ...+..+.+.|..+.. ++. ++++| .+|.+.+||+.+
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d-----d-----------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD-----D-----------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred CCcccchhhhhccCccceeEccC-----c-----------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 0 0 0000 00011111222211 0 0123446677776533 233 34456 899999999998
Q ss_pred CCcccceecccC--ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 265 SNQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 265 ~~~~~~~~~~~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+.....+....+ .....|.++|.++.|.+.- ..=++|+.+..+..|.+............... ..
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l------------kn 251 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITL------------KN 251 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEe------------cC
Confidence 744332211111 2345689999999998764 56678888889999988654211111111111 11
Q ss_pred cceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+.+-||++.+|+++ |++|+||..++ .+++..++.|... |++++|+||...+|.++.|+
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsag---------------vn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAG---------------VNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcc---------------eeEEEeCCCCchhhhccCCc
Confidence 4688899999999999976 49999999997 9999999999866 55999999999999999999
Q ss_pred cEEEEec
Q 010206 422 LFRVFGC 428 (515)
Q Consensus 422 ~i~iw~~ 428 (515)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999987
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-20 Score=152.25 Aligned_cols=268 Identities=16% Similarity=0.220 Sum_probs=182.3
Q ss_pred ccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 33 ~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.|.+....++|+-| ..+||+|+.-|.|+|.|+..++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46777788888764 45899999999999999987764 35677887
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|+.|.++|... ++++++|.|..|++|++++..+..++..
T Consensus 136 ----~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 8899999998554 6999999999999999999876655321
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+|...|.++.|++++.+|+++ -|.+|++|++...+.
T Consensus 177 -----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 177 -----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred -----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 25899999999999999999998 799999999984321
Q ss_pred ccceec------------c------cC--ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-cccccccccee
Q 010206 268 SFNIVD------------V------KP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLF 326 (515)
Q Consensus 268 ~~~~~~------------~------~~--~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~ 326 (515)
...+-. + -| .+-.-|...|-|+.|-- .++++=+-++.|..|..-. .+... .++.-
T Consensus 216 ~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~-~vkp~ 291 (385)
T KOG1034|consen 216 KNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIH-NVKPP 291 (385)
T ss_pred hhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhh-ccCCC
Confidence 110000 0 00 02234667777777763 5788888888999998732 21110 00000
Q ss_pred eeccCCCccccccccccceeEE--EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 327 EEQEAPGTRSFFTEIIASISDI--KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
+.. ......+.--...|.-+ +|.|.++.||.|.. |.|.+||++....+..+-..|.... ..|.
T Consensus 292 es~--~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~------------~tVR 357 (385)
T KOG1034|consen 292 ESA--TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG------------STVR 357 (385)
T ss_pred ccc--eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc------------ceee
Confidence 000 00000011112344444 45577899999987 9999999996333222222222111 1245
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.+|+.||.+|+...+|++|.-||.-
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999999999999999999999864
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.5e-19 Score=149.77 Aligned_cols=298 Identities=17% Similarity=0.272 Sum_probs=194.1
Q ss_pred cchhhhhcccccccccccccceEEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 17 WKFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 17 w~~~~~~~~~~~~~~~~h~~~v~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
-+|..+||+....+..-..=.|+.++|.. +.++||. +|+...+... ....+...+. ..+
T Consensus 9 SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAv--------i~easgGgaf--~ViPl~k~Gr---~d~--- 72 (472)
T KOG0303|consen 9 SKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAV--------IIEASGGGAF--LVIPLVKTGR---MDA--- 72 (472)
T ss_pred hhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEE--------EEecCCCcce--eecccccccc---cCC---
Confidence 46778888877665555566777777754 3344443 4444433211 0011111110 000
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
.+-.+.+|. +.|..++|+|..| ..+++||.|.+|.+|++..+.+.....
T Consensus 73 ~~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt------------------ 121 (472)
T KOG0303|consen 73 SYPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT------------------ 121 (472)
T ss_pred CCCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc------------------
Confidence 112367888 9999999999765 689999999999999987654222111
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFI 250 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 250 (515)
.+. ..+.+|...|--++|+|. .+.|+
T Consensus 122 ----------------------------------------------------epv-v~L~gH~rrVg~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 122 ----------------------------------------------------EPV-VELYGHQRRVGLVQWHPTAPNVLL 148 (472)
T ss_pred ----------------------------------------------------cce-EEEeecceeEEEEeecccchhhHh
Confidence 111 125799999999999996 44556
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|.+|.+|++.+++..+. +. |.+.|+++.|+.+| .+|++.+.|..||+||.++++.+.+- ...++
T Consensus 149 sag~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-~~heG- 216 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG- 216 (472)
T ss_pred hccCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec-ccccC-
Confidence 65 899999999999887653 33 99999999999999 99999999999999999999875431 11111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEE----cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
..-..+.|-.+|..+.+| ++..+-+||..+-..++........ .+|.--
T Consensus 217 -------------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--------------nGvl~P 269 (472)
T KOG0303|consen 217 -------------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--------------NGVLLP 269 (472)
T ss_pred -------------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--------------CceEEe
Confidence 122345566788866565 3489999998764444322222111 113344
Q ss_pred EEcCCCCEEE-EecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECCC
Q 010206 406 CLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPS 453 (515)
Q Consensus 406 ~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 453 (515)
-|.+|.++|. .|-.|+.|+.|.+.+...-++.|.. ...|-+.+.+-|.
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 5778888776 4558999999999876544444432 2345556666554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=157.62 Aligned_cols=220 Identities=14% Similarity=0.223 Sum_probs=170.7
Q ss_pred EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 39 ~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
.|++......|+++|+..+.|+|||+.... +...+.+|. ..|+++
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------------~hr~lkdh~------------stvt~v 127 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------------IHRFLKDHQ------------STVTYV 127 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHH-----------------------HhhhccCCc------------ceeEEE
Confidence 444444445799999999999999997433 234567787 889999
Q ss_pred EEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
.+ ...+.+|++++..|.|.+..+.++.....+.
T Consensus 128 ~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~--------------------------------------------- 160 (673)
T KOG4378|consen 128 DY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFT--------------------------------------------- 160 (673)
T ss_pred Ee--cCCcceeEEeccCCcEEEEecccCcccccee---------------------------------------------
Confidence 99 4566799999999999999988764222111
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+....|+-+.++|..+.+++ + ++|.|.+||+....+.+.
T Consensus 161 --------------------------------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~------ 202 (673)
T KOG4378|consen 161 --------------------------------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH------ 202 (673)
T ss_pred --------------------------------cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc------
Confidence 112244567888888777765 4 899999999987665543
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
-.+.|..+...|+|+|..+.+|++-+.|..|.+||.+........ ....+...++|+++|.+
T Consensus 203 -~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-----------------~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 203 -ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-----------------TYSHPLSTVAFSECGTY 264 (673)
T ss_pred -hhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-----------------eecCCcceeeecCCceE
Confidence 446799999999999998889999999999999999876543221 11257899999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
|++|+. |.|..||++....++.++..|... |++++|-|..
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~s~ 305 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQPSP 305 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeeecc
Confidence 999987 999999999878899999999876 5578887654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=149.93 Aligned_cols=197 Identities=16% Similarity=0.271 Sum_probs=149.2
Q ss_pred ccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
.+|...|.+++|+.. .+.|++| .|.+|++||+.++++.. .+..|...|.+++|+|..+..|++|+.|+++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 589999999999876 5566777 79999999999887653 5667999999999999988999999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
.+.|.|..... ...|.. .+.|..++|.|... .++++.+ |+|+-+|++..++++.++..|...
T Consensus 312 ~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 99999952211 112221 15789999999554 4444555 999999999988999999999976
Q ss_pred cccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccCC---CceeeEEECCCCC-eeEeec
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLGS 461 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~s~~ 461 (515)
+ .++++++.- .+|+|++.|+.|++|++...... ....|. ....+.++.|+-. +++.|+
T Consensus 376 I---------------Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 376 I---------------SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred c---------------ceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecC
Confidence 3 378887754 46889999999999999754322 222222 2244556666655 567777
Q ss_pred CCCeEEE
Q 010206 462 LSGVVRR 468 (515)
Q Consensus 462 ~d~~v~l 468 (515)
..+.+++
T Consensus 439 ~k~~~~v 445 (463)
T KOG0270|consen 439 EKAVLRV 445 (463)
T ss_pred ccceEEE
Confidence 7777777
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-18 Score=164.97 Aligned_cols=311 Identities=15% Similarity=0.237 Sum_probs=204.8
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
+-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+ ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 5678899998889999987779999999877643 22222211 126699
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCC---eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+++....|..++++++.||.|+||+-... +...+.....-. +-...+.....-+.|-.....|
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls------~~~~~~r~~~~v~dWqQ~~G~L------- 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLS------DQLPGARGTGLVVDWQQQSGHL------- 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccc------ccCccCCCCCeeeehhhhCCeE-------
Confidence 999988888889999999999999975432 222221111100 0000000000023344333333
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
++++.-..|+|||+ .. |. .......+....|+++.-+. .|+.+++| .||.|++||.+.......+
T Consensus 1181 -----l~tGd~r~IRIWDa--~~-E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1181 -----LVTGDVRSIRIWDA--HK-EQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred -----EecCCeeEEEEEec--cc-ce-----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 56666889999992 21 11 11111234455677776543 47899999 9999999999866543222
Q ss_pred ecccCccccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~--i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. ..+.|+.. |..+.+.+.|-..|++|+.+|.|++||+|.... .. .+..... ....+..+++.
T Consensus 1248 ~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~---~~~iv~~-------~~yGs~lTal~ 1311 (1387)
T KOG1517|consen 1248 C-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET---FLTIVAH-------WEYGSALTALT 1311 (1387)
T ss_pred e-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc---cceeeec-------cccCccceeee
Confidence 1 34567766 999999998745699999999999999998521 11 1111000 00012589999
Q ss_pred EccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 350 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 350 ~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
.+++...+|+|+.+.|+||++. ++.+..++.+.... ...+..+.+++|+|-.-+||.|+.|..|.||...
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F~--------~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGFM--------GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eccCCCeeeecCcceEEEEecC--hhhhcccccCcccc--------cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999999999988999999997 66666665443322 2344456799999999999999999999999877
Q ss_pred CC
Q 010206 430 EG 431 (515)
Q Consensus 430 ~~ 431 (515)
..
T Consensus 1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred Cc
Confidence 54
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=156.40 Aligned_cols=205 Identities=17% Similarity=0.241 Sum_probs=159.3
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+++++.||.+.+.+-. ++.. .....|.+.+.+-.|+|+| .-|++.+.||.|++|.- +|-+...
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE--------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLRSt------ 140 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVE--------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLRST------ 140 (737)
T ss_pred EEEEcCCceEEEeccc-chhh--------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHHHH------
Confidence 3444488988887643 2211 2567899999999999999 89999999999999984 4433111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
+.....+|+|++|.|+...++.+..+.+.|=.+.. ...+-.++.|++. |.++.|
T Consensus 141 ----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~W 194 (737)
T KOG1524|consen 141 ----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLSW 194 (737)
T ss_pred ----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEeec
Confidence 11122579999999998888877767888888876 5566678889887 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
++.++++++|++|-+.++||-. +..+..-..|..++++++|.|+ +.++.+|. .+.|+ .++. .
T Consensus 195 ~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~-----------~ 256 (737)
T KOG1524|consen 195 STQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR-----------V 256 (737)
T ss_pred CccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------c
Confidence 9999999999999999999976 3455677789999999999999 66666653 34455 2222 5
Q ss_pred CCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 488 MKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
+.|..++||+||..+++|+.+|.+++
T Consensus 257 GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 257 GSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceEEEEEcCCCceeeccccCceEEE
Confidence 78999999999999999999987765
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-17 Score=133.02 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=176.7
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+-+++|.+++|++|..+|.|.+..+...... -+..|.-.....+++|+ ++|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 34666789999999999999999999998643221 01122222334468888 999
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
+.++|. +.+|++++ ||.|+-|..++.....-
T Consensus 66 y~~~f~----d~~Lls~g-dG~V~gw~W~E~~es~~-------------------------------------------- 96 (325)
T KOG0649|consen 66 YYLAFH----DDFLLSGG-DGLVYGWEWNEEEESLA-------------------------------------------- 96 (325)
T ss_pred eeeeee----hhheeecc-CceEEEeeehhhhhhcc--------------------------------------------
Confidence 999994 23666655 59999998775432100
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
.-++|. ... +.+. -.-.-..|+++...|..+-++.+ .|+.++.||+++++...
T Consensus 97 ----------~K~lwe-----~~~-----P~~~-~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r----- 150 (325)
T KOG0649|consen 97 ----------TKRLWE-----VKI-----PMQV-DAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR----- 150 (325)
T ss_pred ----------chhhhh-----hcC-----cccc-CcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-----
Confidence 001111 000 0000 01112568899999876666655 89999999999887553
Q ss_pred cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc-cceeEEEEccC
Q 010206 275 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARN 353 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~ 353 (515)
.+++|++.|.+++-.... ..+++|+.||++|+||.++++.+. .++..+. ...+..|. ..|.+++.+
T Consensus 151 ---~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~----~ie~yk~---~~~lRp~~g~wigala~~-- 217 (325)
T KOG0649|consen 151 ---EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVS----MIEPYKN---PNLLRPDWGKWIGALAVN-- 217 (325)
T ss_pred ---EEcCCcceeeeeeecccC-cceeecCCCccEEEEeccccceeE----EeccccC---hhhcCcccCceeEEEecc--
Confidence 779999999999985544 589999999999999999987542 2222111 11233332 357777765
Q ss_pred CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 354 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 354 ~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
..+|+.|....+.+|.++. ..+...+...... ..+.|- .+.+++++..+.|.-|.+.
T Consensus 218 edWlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 218 EDWLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CceEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec
Confidence 5599998888999999996 7777777644322 246664 3467788888899999886
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=141.16 Aligned_cols=257 Identities=13% Similarity=0.146 Sum_probs=176.7
Q ss_pred eccCcCCeEEEEecCC-CCEEEEe-C---C----CcEEEEeCCCCCcccceecccC-cccc-ccCCceEEEEEecCCCcE
Q 010206 230 AHAHDYHINSISNNSD-GETFISA-D---D----LRINLWNLEISNQSFNIVDVKP-ANME-DLTEVITSAEFHPTHCNM 298 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~-~~~l~s~-~---d----~~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~i~~i~~~p~~~~~ 298 (515)
+..|.+.|..++-+|. .+.|+++ . | -.+.||.+.......+...+.. ..+. .+-+.|.|+.|.|++ ..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Ce
Confidence 3567889999999995 4455555 2 2 2467999875543311100000 1122 345689999999998 67
Q ss_pred EEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc--CCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 299 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
+++-. |..|.+|++..+..+...+..-. -.+|....++-+|+| +|..+++.+++++..||+++..+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~----------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSE----------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccc----------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 77544 88999999988765322111111 122445688889998 899999999999999999973333
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR- 454 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 454 (515)
...-..|... |..+.|.|+.++ |+++++||.|+|||.+..+..++++.+|...+.++.|.|.-
T Consensus 207 ~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 207 NSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred cchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 3333444433 458999998775 78999999999999998888889999999999999999875
Q ss_pred CeeEeecCCCeEEE-----ec-------CCC--------------CCccccCCccccccCCeeEEEEcCCCCEEE-EEcC
Q 010206 455 PSRPLGSLSGVVRR-----VK-------GAD--------------NSALDANGNAFDFSMKLLHLAWHPSENSIA-CAAS 507 (515)
Q Consensus 455 ~~l~s~~~d~~v~l-----~~-------~~~--------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~ 507 (515)
+++++|+.|..|.| .. ..+ +.+.-.....-+|...|++++||.-..++. +-+-
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 67899999999988 11 000 000000111226889999999999888866 5565
Q ss_pred CcEEEE
Q 010206 508 NSLYMY 513 (515)
Q Consensus 508 ~~~~i~ 513 (515)
||-.|.
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 665443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-18 Score=139.70 Aligned_cols=203 Identities=18% Similarity=0.258 Sum_probs=156.8
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~ 309 (515)
.+-+.|.|+.|.|++..+++-.|..|.+|++.........+..+ ....+....++-+|+| ++ +.++ ...|+++.
T Consensus 121 eavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss--~s~e~~~~ftsg~WspHHdg-nqv~-tt~d~tl~ 196 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSS--ESAEMRHSFTSGAWSPHHDG-NQVA-TTSDSTLQ 196 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccc--ccccccceecccccCCCCcc-ceEE-EeCCCcEE
Confidence 55678999999999999998889999999998776532222111 1223567788999999 44 5555 46789999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE-EEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.||+|+.+.... +-..|...+..+.|+|+.++ |++++| |.|+|||.++...+++.+.+|..+
T Consensus 197 ~~D~RT~~~~~s---------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW- 260 (370)
T KOG1007|consen 197 FWDLRTMKKNNS---------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW- 260 (370)
T ss_pred EEEccchhhhcc---------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE-
Confidence 999998654321 12456678999999997665 556665 999999999988899999999988
Q ss_pred ccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCC------------------------c----ceeee
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGS------------------------A----ESTTL 438 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~------------------------~----~~~~~ 438 (515)
|+++.|+|.- ++|.+|+.|..|.+|...+-. . ++.++
T Consensus 261 --------------vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 261 --------------VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred --------------EEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 7899999964 567799999999999764321 0 12356
Q ss_pred ccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 439 EASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
..|.+.|.+++|+...++ +|+-|.||.+.+
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 689999999999998887 577899999988
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.4e-18 Score=149.65 Aligned_cols=208 Identities=13% Similarity=0.180 Sum_probs=152.3
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
..|+.++.||.+.+.+-... .......+ .+.+. +-.|+|||..| ++.++||.
T Consensus 76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH--------~~A~~-------~gRW~~dGtgL------------lt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-VERSISAH--------AAAIS-------SGRWSPDGAGL------------LTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEecccch-hhhhhhhh--------hhhhh-------hcccCCCCcee------------eeecCCce
Confidence 47888999999988864432 11111111 23333 67899999999 99999999
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
|++|. ..++.... +......|.|++|.|+.+.++.+..+.+.+=-+....... ....|.+-|
T Consensus 128 iKiWS-----rsGMLRSt-----l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGii 189 (737)
T KOG1524|consen 128 IKIWS-----RSGMLRST-----VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLV 189 (737)
T ss_pred EEEEe-----ccchHHHH-----HhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEE
Confidence 99998 33322211 2345578999999999999998877777776665443332 668899999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
.++.|+|.. +++++|+.|-..++||-....+.. -..|.-+|++++|.|+ +.++.++.++++
T Consensus 190 L~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf~-----------------S~~~ey~ITSva~npd-~~~~v~S~nt~R 250 (737)
T KOG1524|consen 190 LSLSWSTQS-NIIASGGEDFRFKIWDAQGANLFT-----------------SAAEEYAITSVAFNPE-KDYLLWSYNTAR 250 (737)
T ss_pred EEeecCccc-cceeecCCceeEEeecccCccccc-----------------CChhccceeeeeeccc-cceeeeeeeeee
Confidence 999999998 999999999999999975543321 2446678999999999 777777776666
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+=..+. ..|+.++||+||..++.|...|.+.+=
T Consensus 251 ~~~p~~---------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 251 FSSPRV---------------------------GSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ecCCCc---------------------------cceEEEEEcCCCceeeccccCceEEEe
Confidence 211111 115689999999999999988887653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-15 Score=147.10 Aligned_cols=368 Identities=21% Similarity=0.333 Sum_probs=244.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|...+.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 458999999999999999999999999999999876541 1123333220
Q ss_pred ccceeEEEEEeecCCCc-EEEeeeC-CCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~-~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..+..+.+. ..++. .++..+. |+.+.+|+... .........+. ..+. .+.++|+++.+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS--------ESVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc--------ccEE-------EEEECCCCCEE-
Confidence 246777775 45555 4555444 99999999997 44444433331 2222 67899999876
Q ss_pred cccccCCCCCCCCCCC-cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCC
Q 010206 188 RNFGCASNDSSFPPGG-VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~ 264 (515)
+.++. ++.+++|+ ... ...... +.+|...|.+++|+|++. .++++ .|+.|++||...
T Consensus 171 -----------~~~~~~~~~~~~~~--~~~------~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~ 230 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD--LRT------GKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230 (466)
T ss_pred -----------EecCCCCCceEEEE--cCC------CceEEe-eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence 77765 99999999 332 112222 356899999999999998 55554 799999998774
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
...... .+..|.... -..|+|++ ..+++++.|+.+++|+++..... ... +.+|...
T Consensus 231 ~~~~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~------------~~~~~~~ 286 (466)
T COG2319 231 GKLLRS-------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRT------------LSGHSSS 286 (466)
T ss_pred CcEEee-------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEE------------EecCCcc
Confidence 332211 245566664 33899998 88899999999999999876530 011 1344578
Q ss_pred eeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEe--eeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCC
Q 010206 345 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYS 420 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~d 420 (515)
+.++.|+|++..+++++ ++.+.+||... ........ .|... +..+.|.+++..++.+ ..|
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d 350 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDD 350 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCC
Confidence 99999999888888865 47899998875 44444433 33321 3467774343555555 688
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.+.+|++.... ........ ..+..+.+.+ ...... +..++.+.+.+..... .......+...+....+++++
T Consensus 351 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 351 GTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS---LLRNLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred CcEEeeecCCCc-eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCe---eeeeccCCCCcEEEEEECCCC
Confidence 999999998764 22222222 2278888888 533444 6788888882222111 111111111689999999999
Q ss_pred CEEEEEc-CCcEEEEe
Q 010206 500 NSIACAA-SNSLYMYY 514 (515)
Q Consensus 500 ~~la~~~-~~~~~i~~ 514 (515)
..++.++ .+.+.+|.
T Consensus 425 ~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 425 KSLASGSSDNTIRLWD 440 (466)
T ss_pred cEEEEecCCCcEEEEe
Confidence 9999754 45577664
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=158.55 Aligned_cols=287 Identities=14% Similarity=0.197 Sum_probs=187.4
Q ss_pred cccccchhhhhcccccccccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
....|.+..- ..+.....-...|+|++|+| +..++|.|..+|.|.+||+..+... |...
T Consensus 223 ~~~vW~~~~p---~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP---NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC---CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 4567887753 22323345578999999999 6778889999999999999876542 0000
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEE-EeeccCCcccCCCCCCccCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~ 170 (515)
.-.....|. .+|..+.|..++.+.-+++++.||.|..|+++.-.... ......... .+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence 111233455 88999999887766679999999999999877543211 111000000 0000111
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc--ccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
....+.+.|.+.... .++.|+..|.|.--. ..+..... ..+.... ...|.+.|.++.++|-+..
T Consensus 347 ~~~~t~~~F~~~~p~-----------~FiVGTe~G~v~~~~--r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPN-----------HFIVGTEEGKVYKGC--RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccceeeEeeccCCCc-----------eEEEEcCCcEEEEEe--ccCCccccccccccccc-ccccCcceEeeecCCCccc
Confidence 122225556554332 248888889887533 12222111 1111222 3578899999999997776
Q ss_pred EEEe-CCCcEEEEeCC-CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccccee
Q 010206 249 FISA-DDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
++.+ .|-+++||.-. .....+ .+..+...+++++|||..+.+|+++..||.|.+||+........ ..
T Consensus 413 ~fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv--~s- 481 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV--LS- 481 (555)
T ss_pred eeeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc--cc-
Confidence 6654 89999999876 333222 34556777999999999989999999999999999976543111 00
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEee
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 371 (515)
..-+....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 482 -----------~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 482 -----------QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -----------ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1111356778888999999999998 999999996
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-18 Score=143.57 Aligned_cols=299 Identities=15% Similarity=0.125 Sum_probs=201.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++|.| +.++++|++|+.|..+++|++...-..++
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------- 93 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------- 93 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence 99999999 56688999999999999999875321111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.++....-..|...|.|++|+....++.+| .+++|.+.|+++.+.+...
T Consensus 94 ------------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 94 ------------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred ------------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 011111124577899999999999999998 8999999999987654321
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.-....+.|+.+..+|.. +.|++.+.++.|.+||.+..... ...+... ........+.|+
T Consensus 144 ------~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~---~~~~~~A----------N~~~~F~t~~F~ 203 (609)
T KOG4227|consen 144 ------NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNP---ISLVLPA----------NSGKNFYTAEFH 203 (609)
T ss_pred ------cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCC---Cceeeec----------CCCccceeeeec
Confidence 112234589999999997 89999999999999999876421 1111111 122457888999
Q ss_pred cC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 RN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
|. ..+|++.+. +-+.+||.+++..++....+....... -..-+++.|+|.|+.+++--....-.+||+.
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~---------~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE---------NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCccc---------chhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 95 456666766 889999999866666554433322110 0012378999999999887766667788887
Q ss_pred CCCcceeeeccC------CCceeeEEECCCCCeeEeecCCCeEEEec-------------CCCCC--ccc--cCC---cc
Q 010206 430 EGSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVK-------------GADNS--ALD--ANG---NA 483 (515)
Q Consensus 430 ~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-------------~~~~~--~~~--~~~---~~ 483 (515)
+..+.+...... ...+.+++|..+. .+++|+.+-.+.+++ |+... +.+ +.. .+
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VL 353 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVL 353 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEE
Confidence 643333222211 1235566776554 499999998888711 11000 000 011 12
Q ss_pred ccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 484 FDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 484 ~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
.+|...++.+.|+|-.++|++++ .+.+.||+
T Consensus 354 rGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 354 RGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecccccccceeecCCcceEeccchhhheeccc
Confidence 36788899999999998888554 77788986
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=154.89 Aligned_cols=273 Identities=15% Similarity=0.165 Sum_probs=186.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|+.++|.|....|++++.||.|++|++...... -..+...+.+|++|+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4578999999999999999999999999999999432110 011344566799998
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
++|.|++. ..++.++++|+.||+|+.|++.... ... ..
T Consensus 345 --gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~-------------------------------ds------ 382 (577)
T KOG0642|consen 345 --GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-DPD-------------------------------DS------ 382 (577)
T ss_pred --CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-Ccc-------------------------------cc------
Confidence 99999999 5678899999999999999976221 000 00
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+| .......+.||...|+.+++++....|+++ .||++++|+......+
T Consensus 383 -------------------~d-----------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~- 431 (577)
T KOG0642|consen 383 -------------------YD-----------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC- 431 (577)
T ss_pred -------------------cC-----------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc-
Confidence 00 000011147999999999999999899998 8999999998755441
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
++ ......+...++.+-...+.+.++...-+.-.++++..... ...++....+.+. -...+..+.
T Consensus 432 -~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~-----~~~~in~vV 496 (577)
T KOG0642|consen 432 -TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPR-----RYPQINKVV 496 (577)
T ss_pred -cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCccc-----ccCccceEE
Confidence 11 11112233456666443322333333333333444433321 2333322222111 113477788
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++|.+.+.+++.+ +.|+++|..+ ++++.....|... ++++++.|+|-+|++++.|+.+++|.+
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~s---------------vtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDS---------------VTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ecCCCCeeEecccCCceecccccc-cccchheeeccce---------------ecceeecCCCceEEeecCCceeehhhc
Confidence 8998888888765 9999999997 8888888888765 559999999999999999999999999
Q ss_pred CCCC
Q 010206 429 SEGS 432 (515)
Q Consensus 429 ~~~~ 432 (515)
....
T Consensus 561 d~k~ 564 (577)
T KOG0642|consen 561 DVKT 564 (577)
T ss_pred cchh
Confidence 7653
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=153.45 Aligned_cols=258 Identities=19% Similarity=0.219 Sum_probs=175.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+.++|.|+.. .|++++.|++|++|+++... ...
T Consensus 295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~s~---------------------------------------- 330 (577)
T KOG0642|consen 295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--KSA---------------------------------------- 330 (577)
T ss_pred hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--Ccc----------------------------------------
Confidence 8899999987755 89999999999999994311 000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
......+|. +.+|.++|.|+++.++++.+.+| -||+|+.|++....-....
T Consensus 331 ----------~~~~epi~t------------------fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 331 ----------EKDVEPILT------------------FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred ----------ccceeeeEE------------------EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence 000112222 47999999999999999999998 7999999976533222211
Q ss_pred ecc--cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 272 VDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~--~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+. -...+.+|.+.++.+++++.. ..|++++.||++++|+......+ +|..+... +.-.++.
T Consensus 383 ~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~-----~f~~~~e~----------g~Plsvd 446 (577)
T KOG0642|consen 383 YDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPC-----TFGEPKEH----------GYPLSVD 446 (577)
T ss_pred cCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCcc-----ccCCcccc----------CCcceEe
Confidence 110 013678999999999999987 88999999999999998765431 12221110 2233444
Q ss_pred EccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+-.....+...+. +.--++++.. ...+..+........ .....+..+.++|.+.+.+++..|+.|+++|
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~--------~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGP--------RRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred eccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcc--------cccCccceEEecCCCCeeEecccCCceeccc
Confidence 4322211222221 3333444443 222222222111100 0011234788999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++ .++.....|...++++++.|+|.+|++++.|+.+++
T Consensus 518 n~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 518 NKTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred cccc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 9988 566888999999999999999999999999999999
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-19 Score=163.63 Aligned_cols=277 Identities=15% Similarity=0.218 Sum_probs=206.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|...|.|+.|...|.++++|+.|..|+||...++. +++...||+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs--------- 232 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS--------- 232 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc---------
Confidence 356899999999999999999999999999999988776 457889998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|+.++. +.+..+++++++|..|++|.+..+....+
T Consensus 233 ---~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvsv-------------------------------------- 269 (1113)
T KOG0644|consen 233 ---GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVSV-------------------------------------- 269 (1113)
T ss_pred ---cccchhcc--chhhhhhhhcccCceEEEEecCCCchHHH--------------------------------------
Confidence 88999998 45566889999999999999887652211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSF 269 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 269 (515)
+.+|.+.|++++|+|-. .+++||++++||.+-.-
T Consensus 270 ----------------------------------------LrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~--- 303 (1113)
T KOG0644|consen 270 ----------------------------------------LRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP--- 303 (1113)
T ss_pred ----------------------------------------HhccccceeeeccCccc---cCCCCCceEeccccccc---
Confidence 46899999999999976 34589999999988111
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+...+|..+. ...-+.++.|..++ .-+++|+.|+.-+.|.+..... +...+.-+.
T Consensus 304 ~~y~prp~~~~-~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~----------------------~~~~lif~t 359 (1113)
T KOG0644|consen 304 RIYVPRPLKFT-EKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW----------------------RSNLLIFVT 359 (1113)
T ss_pred cccCCCCCCcc-cccceeeeeccccc-cccccccCCcccccchhhHhhh----------------------hccceEEEe
Confidence 11111222222 23556778888887 7899999999999888754321 111122222
Q ss_pred EccCC-CEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE-EEEecCCCcEEEE
Q 010206 350 FARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~~~-~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~s~dg~i~iw 426 (515)
++.+- .+.+++ .+-.+++|++.. +.....+.+|... ++.+.++|-... ..+++.||...||
T Consensus 360 ~ssd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~---------------~yvLd~Hpfn~ri~msag~dgst~iw 423 (1113)
T KOG0644|consen 360 RSSDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDE---------------VYVLDVHPFNPRIAMSAGYDGSTIIW 423 (1113)
T ss_pred ccccccccceeeeeeeEeeeeeccc-chhhhhhcccccc---------------eeeeeecCCCcHhhhhccCCCceEee
Confidence 22222 233333 457899999986 8888888888766 347889995554 5589999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+-.+.+......+|. .+..-.|+++|..++....-|.+.+
T Consensus 424 di~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 424 DIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEE
Confidence 9998876665556654 4446789999999988888888888
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-17 Score=135.13 Aligned_cols=354 Identities=15% Similarity=0.163 Sum_probs=213.6
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
-++|||+|+++|+.+.- ++.|-|..+-+.. ..|.. -..|.-|.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~c-------------ldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFLC-------------LDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHHH-------------HHHhhhee
Confidence 47899999999999765 7888887655432 11111 15688889
Q ss_pred EeecCCCcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 120 WCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 120 ~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
|. .+..+++.+ ..|+.|.+|++...+........ ...+. +..|||||+.+ +
T Consensus 56 W~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg--------~agls-------~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 WK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG--------QAGLS-------SISWSPDGRHI-----------L 107 (447)
T ss_pred ee--ccceeeeeeeeccceEEEEEeecceeEEEeccC--------CCcce-------eeeECCCcceE-----------e
Confidence 94 555555554 67889999999887654443322 12222 78999999765 2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+...+-.|.+|. +.+..... +.-....+..++|+|||++.+.+ .|.. ....+..-+ ...++
T Consensus 108 ~tseF~lriTVWS--L~t~~~~~--------~~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~~c~-~W~ll---- 171 (447)
T KOG4497|consen 108 LTSEFDLRITVWS--LNTQKGYL--------LPHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQISSCK-AWILL---- 171 (447)
T ss_pred eeecceeEEEEEE--eccceeEE--------ecccccCceeEEECCCCceeeeeecccHH-HHHHHHhhH-HHHHH----
Confidence 5566777999998 44433311 22233456889999999998876 2321 011111000 00000
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
..+.-.+-..+.+.|+||| +.|++=.. +-.|..|.-. -.+..++|+|.+
T Consensus 172 ~~f~~dT~DltgieWsPdg-~~laVwd~~Leykv~aYe~~----------------------------lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDG-NWLAVWDNVLEYKVYAYERG----------------------------LGLKFVEWSPCN 222 (447)
T ss_pred HhcCCCcccccCceECCCC-cEEEEecchhhheeeeeeec----------------------------cceeEEEecccc
Confidence 0222234456788999998 66664322 2222222211 247889999999
Q ss_pred CEEEEEcC-CeEEEEEeeCCCCCeee------------------------------------Eeeecccccccccccc--
Q 010206 355 RHILSRDY-MTLKLWDINMDSGPVAT------------------------------------FQVHEHLRPKLCDLYE-- 395 (515)
Q Consensus 355 ~~l~s~~~-~~i~iwd~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~-- 395 (515)
++|+.|+. +.+++.+--+ -++... +..|... .....|+
T Consensus 223 qflavGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~--~se~~YE~~ 299 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE--ESETIYEQQ 299 (447)
T ss_pred ceEEeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc--cchhhhhhh
Confidence 99999975 8888765321 000000 0000000 0000010
Q ss_pred ---------------CCCccceeeEEEcCCCCEEEEecC--CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 396 ---------------NDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 396 ---------------~~~~~~v~~~~~s~~~~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
.++..++--++|++|..|++|-.+ -+.+.+||++.. .+...-....+|++..|.|..+.|+
T Consensus 300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~ 377 (447)
T KOG4497|consen 300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLV 377 (447)
T ss_pred hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEE
Confidence 011123456899999999998653 468999999854 3344555678999999999999988
Q ss_pred eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEE
Q 010206 459 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 512 (515)
Q Consensus 459 s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i 512 (515)
.+.....+.+ |.+.+. +.+......-.|..+.|+.+|..|+..+.|...+
T Consensus 378 vctg~srLY~---W~psg~-~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 378 VCTGKSRLYF---WAPSGP-RVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred EEcCCceEEE---EcCCCc-eEEecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 8876666666 333321 1111122246799999999999999888776543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=149.78 Aligned_cols=230 Identities=12% Similarity=0.142 Sum_probs=167.9
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+++|...|.|++|+.||+.+++| .|..|.+|...-.... -..|.+.|.|+.|+|-. +.|++++-. ..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----------kYSH~D~IQCMsFNP~~-h~LasCsLs-dF 116 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----------KYSHNDAIQCMSFNPIT-HQLASCSLS-DF 116 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEeccccccee----------eeccCCeeeEeecCchH-HHhhhcchh-hc
Confidence 57899999999999999999999 8999999987643322 14599999999999987 788887765 46
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
-+|......... ......+.+++|..||++++.|-. |+|.+=+-. +++...+..+.+..
T Consensus 117 glWS~~qK~V~K------------------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK------------------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN 176 (1081)
T ss_pred cccChhhhhHHh------------------hhhheeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCC
Confidence 788876543211 011246889999999999999965 999987654 44444444333221
Q ss_pred ccccccccCCCccceeeEEEcCCC-----CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
..|++++|+|.. ..++......++.+|.+.. +.+..-+.-.-...++.+.++|.+++.|+.
T Consensus 177 ------------spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 177 ------------SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred ------------CCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeecccccCCCCchhheeccCCcEEEEccC
Confidence 126799999964 4688888888999998873 232222222334458889999999999999
Q ss_pred CCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 463 SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 463 d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
|+.+.+ .+|-.+ ++.-.+...|..++..|+++++++|+.||.+
T Consensus 243 dk~L~~fTR~GvrL------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRL------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CCceEEEeecCeEE------eeccccceeEEEEEEccCCceEEEEEccCee
Confidence 999998 222211 2223357789999999999999999988743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=141.01 Aligned_cols=280 Identities=15% Similarity=0.132 Sum_probs=168.9
Q ss_pred EEeeeCCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCC-CCccc
Q 010206 129 YLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP-GGVSS 206 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~-~~~~~ 206 (515)
+++...++.|.+|++.+ +++......... +. +..++++|+++.| +.+ ..++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-------~~-------~~~l~~spd~~~l------------yv~~~~~~~ 58 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVP-------GQ-------VQPMVISPDKRHL------------YVGVRPEFR 58 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecC-------CC-------CccEEECCCCCEE------------EEEECCCCc
Confidence 34447789999999964 443322222110 11 1178899999987 443 45688
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
|.+|+ +.. .+.. ..... .........++++|++++|+++ .++.|.+|++++......... .+. +..
T Consensus 59 i~~~~--~~~-~g~l--~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~ 126 (330)
T PRK11028 59 VLSYR--IAD-DGAL--TFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLE 126 (330)
T ss_pred EEEEE--ECC-CCce--EEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCC
Confidence 88898 431 1111 11111 1122356789999999998887 599999999974332211110 111 234
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 285 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
...+++++|++ +++ ++...++.|.+||+.+...+... ....... . ......+.|+|+|+++++.+.
T Consensus 127 ~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~---------~--g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 127 GCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV---------E--GAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCcccccCCCceecC---------C--CCCCceEEECCCCCEEEEEec
Confidence 46788999998 555 55556799999999763322110 0000100 0 123567899999999988753
Q ss_pred --CeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCccee
Q 010206 363 --MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAEST 436 (515)
Q Consensus 363 --~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~ 436 (515)
+.|.+|++...... +..+....... ... .....+.++|++++|+++. .++.|.+|++...+...
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~-------~~~--~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~- 264 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADF-------SDT--RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL- 264 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcC-------CCC--ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-
Confidence 99999999742122 22221111000 000 0012588999999998875 47899999996543221
Q ss_pred eeccC---CCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 437 TLEAS---KNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 437 ~~~~~---~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
++..+ ......+.++|++++|++++. +++|.+
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEE
Confidence 22222 124568899999999987765 888888
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-16 Score=146.78 Aligned_cols=304 Identities=17% Similarity=0.261 Sum_probs=205.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|+-.++|.++||+++++|+|..||+|.+|.--.... +---.+.++.|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 467888899999999999999999999999998543110 001224577887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|+++.| +.+|.+|++|+.++.+-+|.+.+++...
T Consensus 252 --~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------- 287 (792)
T KOG1963|consen 252 --DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------- 287 (792)
T ss_pred --cccceeEE--ecCCceEeecccceEEEEEeecCCCccc----------------------------------------
Confidence 77999999 5678899999999999999999876222
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+..-...|..+.++||+.+.+.. .|..|.+....+.....
T Consensus 288 ---------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 288 ---------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ---------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 12223678899999999999887 89999999876555444
Q ss_pred ceecccCc---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~~~~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.+..+.+. .-....+-.+.++++|.- +.++..+..|.|.+||+.+...+.+ ....+.+..... ..+.-.++
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~----~n~~v~it 402 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGD----VNIQVGIT 402 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCCc----ceeEEeee
Confidence 33333221 111234556788899954 6888899999999999988765422 222222222111 13445788
Q ss_pred EEEEccCCCEEEEEc---------C--CeEEEEEeeCCCCCeeeEe-----eeccccccccccccCCCccceeeEEEcCC
Q 010206 347 DIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~---------~--~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
+++.+..|.++++.. + -.+++|-... ...-..+. .|+.. . +..+..++.
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~------------~--vat~~~~~~ 467 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP-NSKTFILNTKINNPHGNA------------F--VATIFLNPT 467 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC-CcceeEEEEEEecCCCce------------e--EEEEEecCc
Confidence 888888899999842 1 3578888764 22211211 12111 0 112233333
Q ss_pred CC-EEEEecCCCcEEEEecCCCCcce---------eeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 411 GG-RVATGSYSNLFRVFGCSEGSAES---------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 411 ~~-~l~s~s~dg~i~iw~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ..++++.||.++||-+...+... ..-..|..++++.+|+.||..| +.+.|++|.+
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Iti 534 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITI 534 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEE
Confidence 33 78999999999999984432211 1112478999999999999555 5567888888
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=146.93 Aligned_cols=304 Identities=14% Similarity=0.191 Sum_probs=216.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.-.|.+.|..|.|+..|..|++|+.|..|.+||+..+... +.-..+|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 4579999999999999999999999999999999877642 11234666
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..-.|.|..+...+++++.||.+++=.+....
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------------------------- 220 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------------------------- 220 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeecccc-------------------------------------------
Confidence 66888889998888899999999999876544321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...++.+ +..|.+.|.-++.-|+.. .|.++ .|+.+.-+|++.....
T Consensus 221 -----------~~e~t~r---------------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa 268 (559)
T KOG1334|consen 221 -----------YVENTKR---------------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA 268 (559)
T ss_pred -----------ceeccee---------------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCcc
Confidence 1111111 357888899999888644 45555 8999999999876544
Q ss_pred cceecccCccccccCC---ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc--cccceeeeccCCCcccccccccc
Q 010206 269 FNIVDVKPANMEDLTE---VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--THSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~---~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
..+. .-+.+.. ..+.++..|...+.+++|+.|-.+++||.+.-..-. ..+..+..+. ....-.-
T Consensus 269 ~~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h------l~~d~~v 337 (559)
T KOG1334|consen 269 EKFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH------LVEDDPV 337 (559)
T ss_pred ceee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc------ccccCcc
Confidence 3322 1112222 567899999887799999999999999988643211 0111121111 1112224
Q ss_pred ceeEEEEccC-CCEEEEEcCCeEEEEEeeCC-C----------CCee-eEeeeccccccccccccCCCccceeeE-EEcC
Q 010206 344 SISDIKFARN-GRHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSG 409 (515)
Q Consensus 344 ~i~~~~~s~~-~~~l~s~~~~~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~ 409 (515)
.|++++|+.+ +.+|++-.|-.|+++.-... + ..++ .+++|..... + -.+ -|.|
T Consensus 338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T----------V---KgVNFfGP 404 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT----------V---KGVNFFGP 404 (559)
T ss_pred cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc----------c---ceeeeccC
Confidence 6999999965 45666666778888854431 1 1122 2566654321 1 133 3678
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
...|+++||.=|.|.||+-+++ +++..+++...-|+++.-+|--+.||+++-|.-|+|
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred ccceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence 8999999999999999999877 676888888889999999999999999999999999
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-16 Score=145.59 Aligned_cols=260 Identities=13% Similarity=0.170 Sum_probs=177.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.|+|... .+++.|+.+|+|.+||++.+........
T Consensus 243 s~v~~~~f~p~~p-~ll~gG~y~GqV~lWD~~~~~~~~~s~l-------------------------------------- 283 (555)
T KOG1587|consen 243 SEVTCLKFCPFDP-NLLAGGCYNGQVVLWDLRKGSDTPPSGL-------------------------------------- 283 (555)
T ss_pred CceeEEEeccCCc-ceEEeeccCceEEEEEccCCCCCCCccc--------------------------------------
Confidence 6799999998654 5888899999999999987652210000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
......|..++..+.|..+. .-|+++ .||.|..|+++.-....
T Consensus 284 ----------------------------------s~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 284 ----------------------------------SALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred ----------------------------------ccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 00024677888888886543 337776 89999999887554433
Q ss_pred ceecccCcc----ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 270 NIVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 270 ~~~~~~~~~----~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
......+.. -......+++++|.+..++.|+.|+.+|.|.--+....+... ...++. ...+..|.++|
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~------~~~~~~h~g~v 401 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKG------HSTFITHIGPV 401 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccc------cccccccCcce
Confidence 222111100 012245689999999988999999999998763332221111 011121 22356788999
Q ss_pred eEEEEccCCC-EEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCCcE
Q 010206 346 SDIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i 423 (515)
+++.++|-+. .+.+++|-+++||.......++..+..+... +++++|||... .++++..||.|
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCce
Confidence 9999999554 4445567899999987335666665544432 56999999875 56678889999
Q ss_pred EEEecCCCCcc-eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+||+...... ..+.+.+....+.+.+++.|+.|+.|+..|.+.+
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 99999754322 2444455666778888999999999999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-17 Score=138.82 Aligned_cols=227 Identities=13% Similarity=0.214 Sum_probs=162.4
Q ss_pred cccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.-.+|+++|..++|+| +...||+|+.|.+|.||++..+... .+-......+.+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~-------- 131 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ-------- 131 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc--------
Confidence 3468999999999999 6678999999999999999776543 11223456788898
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|..++|+|... +.|++++.|.+|.+|++.+++......+ .+-++ ++.|+.||..+
T Consensus 132 ----rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~h---------pd~i~-------S~sfn~dGs~l-- 188 (472)
T KOG0303|consen 132 ----RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLDH---------PDMVY-------SMSFNRDGSLL-- 188 (472)
T ss_pred ----eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecCC---------CCeEE-------EEEeccCCcee--
Confidence 8999999999766 5899999999999999999986555442 23344 89999999999
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-CeEEEEecCCCCEEEEe----CCCcEEEEeCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA----DDLRINLWNLE 263 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~----~d~~i~iwd~~ 263 (515)
++++.|..|++|| ....+. ...- .+|.+ .-.-+.|-.++..+.+| ++..+.+||..
T Consensus 189 ----------~TtckDKkvRv~d--pr~~~~------v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 189 ----------CTTCKDKKVRVID--PRRGTV------VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred ----------eeecccceeEEEc--CCCCcE------eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 9999999999999 333222 1111 24433 23345577888877777 38999999988
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
..+....+. .+.. ...|.---|.|+..-+.++|-.|+.||.|.+.+......++.+|..
T Consensus 250 nl~eP~~~~-----elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 250 NLEEPIALQ-----ELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred cccCcceeE-----Eecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 766554332 2222 3345545567877334445556999999999877644444444443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-15 Score=126.30 Aligned_cols=158 Identities=11% Similarity=0.180 Sum_probs=119.1
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~w 311 (515)
..|.++.++. +.|+++ .+. |+|||+++.+....+. ....+...+.++.+++.+ .+++.-+ ..|.|.+|
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEE
Confidence 5677777754 456776 433 9999999887665443 222345556677777666 5777543 36899999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|..+.+.. ..+..|.+++.+++|+++|.+||++++ | .|||+.+.. ++.+..|+.......
T Consensus 159 d~~nl~~v----------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~- 220 (391)
T KOG2110|consen 159 DTINLQPV----------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS- 220 (391)
T ss_pred Ecccceee----------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE-
Confidence 99876542 236778899999999999999999998 5 579999986 888888764433221
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|.+++|+||+++|++.|+.++|++|.++..
T Consensus 221 ------------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 ------------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ------------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 559999999999999999999999999854
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=144.72 Aligned_cols=241 Identities=19% Similarity=0.235 Sum_probs=158.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+..+|++.|+|++|+.||.+|++|+.|-++.|||....+. ....-.+|.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 4579999999999999999999999999999999764432 112235677
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.++.|.|..++..+++|+.|..|+++|+...+-......
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~----------------------------------- 135 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG----------------------------------- 135 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------------------------------
Confidence 889999999999999999999999999999986431111000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..-++++ ...|...|..++..|++ +.+-++ .||+|+.+|++....
T Consensus 136 -------------~~~~~~~--------------------~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 136 -------------MEETTRC--------------------WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred -------------ccchhhh--------------------hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 0001111 14677888889999987 666676 899999999987543
Q ss_pred ccceecc--cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--eeeccCCC-ccccccccc
Q 010206 268 SFNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FEEQEAPG-TRSFFTEII 342 (515)
Q Consensus 268 ~~~~~~~--~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 342 (515)
+..-.+. ....+...--...++.++|..+.+|+.|+.|-..++||.+..........+ ...+..-. ...+..+|.
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL 262 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence 3210000 000111122346799999999899999999999999996432111000000 00000000 000111111
Q ss_pred -----------cceeEEEEccCCCEEEEE-cCCeEEEEEeeC
Q 010206 343 -----------ASISDIKFARNGRHILSR-DYMTLKLWDINM 372 (515)
Q Consensus 343 -----------~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~ 372 (515)
..++-+.|+|+|..|+.. +.-.|+++|+..
T Consensus 263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 236778899999877663 335899999975
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-16 Score=134.78 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=135.2
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
..++|+.+| ..+++|+.||++|+|+..+..... ....|...|.++.|+|||++|++-+....+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l----------------~e~~~~~eV~DL~FS~dgk~lasig~d~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL----------------EEIAHHAEVKDLDFSPDGKFLASIGADSAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhh----------------hhHhhcCccccceeCCCCcEEEEecCCceE
Confidence 789999998 899999999999999965544321 135577899999999999999984433899
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC---C--EEEEecCCCcEEEEecCCCCc----ceee
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G--RVATGSYSNLFRVFGCSEGSA----ESTT 437 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~--~l~s~s~dg~i~iw~~~~~~~----~~~~ 437 (515)
||+..+ +..+......+.. . . .-.+.|+.|+ . ..+.-..-+.|+.|++..... +...
T Consensus 211 VW~~~~-g~~~a~~t~~~k~-~----------~--~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~ 276 (398)
T KOG0771|consen 211 VWSVNT-GAALARKTPFSKD-E----------M--FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK 276 (398)
T ss_pred EEEecc-CchhhhcCCcccc-h----------h--hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh
Confidence 999997 6555544321111 0 0 1267888777 2 333444566777777654332 1122
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE-EcCCcEEE
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC-AASNSLYM 512 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~-~~~~~~~i 512 (515)
.-.....+++++++++|++++.|+.||.|-+++..+... .......|...|+.+.|+||.++++. ++++...+
T Consensus 277 ~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 277 KIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred hhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 233456799999999999999999999999955554442 11112347889999999999999984 44554444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=130.05 Aligned_cols=291 Identities=11% Similarity=0.064 Sum_probs=177.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+++.| ..+ .+|+++..-|.|++|++++.+.......... ..+. .+...|++.
T Consensus 15 ~~v~s~~f--qa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-------~~it-------~lq~~p~d~-------- 69 (323)
T KOG0322|consen 15 SSVTSVLF--QAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGR-------LFIT-------NLQSIPNDS-------- 69 (323)
T ss_pred chheehhh--ccc-hhhhcccccceEEEEEeecCccchhhhhhcc-------ceee-------ceeecCCcc--------
Confidence 88999999 555 4799999999999999998775554442210 1111 333444433
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-----C----CEEEEeCC--CcEEEEe
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----G----ETFISADD--LRINLWN 261 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~d--~~i~iwd 261 (515)
+.+-+.|..+.+|++ ... .+...|.-.++++.|.+. + +.++.-.. ..+.+-|
T Consensus 70 -----l~tqgRd~~L~lw~i--a~s----------~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 70 -----LDTQGRDPLLILWTI--AYS----------AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred -----hhhcCCCceEEEEEc--cCc----------ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 278899999999993 211 112334444455555431 1 12222111 1112222
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecC-C-CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-H-CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.- . ..++. +.+....+..+.+.+..+.-+ + .-+++.|..+|.+.+||+.++.........+. -..-..
T Consensus 133 ~g--~-~tqv~-i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k------v~~~~a 202 (323)
T KOG0322|consen 133 GG--D-TTQVQ-IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK------VESPNA 202 (323)
T ss_pred cC--c-cceeE-ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccc------cccchh
Confidence 11 1 11111 111122234566777664322 2 13567788899999999998743222111111 112245
Q ss_pred ccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 340 EIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
.|..+|.++.+.+.-..=++|+ +..+..|.+......++.-..+.-.. . +|..+.+-||++.+||++
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn---------p---Gv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN---------P---GVSGVRIRPDGKILATAG 270 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC---------C---CccceEEccCCcEEeecc
Confidence 6889999999987443444444 36888898874211111111010000 0 133788999999999999
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.|++||||+.++. ..+..|+.|...+++++|+|+...+|.+|.|+.|.+
T Consensus 271 WD~RiRVyswrtl-~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 271 WDHRIRVYSWRTL-NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cCCcEEEEEeccC-CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 9999999999988 455899999999999999999999999999999998
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-15 Score=139.69 Aligned_cols=274 Identities=9% Similarity=0.055 Sum_probs=164.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++...++.|.+|+ +... +. ....+.. .+......++++|++++|+++ .++.|.+|++...... ....
T Consensus 6 ~~~~~~~~I~~~~--~~~~-g~--l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~--- 74 (330)
T PRK11028 6 IASPESQQIHVWN--LNHE-GA--LTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA--- 74 (330)
T ss_pred EEcCCCCCEEEEE--ECCC-Cc--eeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee---
Confidence 4556789999999 5321 11 1122221 233567789999999998775 5899999999732221 1110
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.. ........++|+|++ +++++++ .++.|.+|++.......+....+. +......++++|+++
T Consensus 75 -~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------------~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 75 -ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------------GLEGCHSANIDPDNR 138 (330)
T ss_pred -ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------------CCCcccEeEeCCCCC
Confidence 11 122346789999999 6666655 489999999964322111111111 112356788999999
Q ss_pred EEEEEc-C-CeEEEEEeeCCCCCee----eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcEEEEec
Q 010206 356 HILSRD-Y-MTLKLWDINMDSGPVA----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGC 428 (515)
Q Consensus 356 ~l~s~~-~-~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i~iw~~ 428 (515)
++++++ . +.|.+||+...+.... ......+. . ...++|+|+|++++++.. +++|.+|++
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-----------~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-----------G---PRHMVFHPNQQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC-----------C---CceEEECCCCCEEEEEecCCCEEEEEEE
Confidence 997754 3 9999999975232211 01111110 0 126899999999987775 899999999
Q ss_pred CCC-Ccc--eeeeccC------CCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCc-cccCCccccccCCeeEEEEcC
Q 010206 429 SEG-SAE--STTLEAS------KNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSA-LDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 429 ~~~-~~~--~~~~~~~------~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+.. +.. ...+... ......+.++|++++++++.. ++.|.+++-..... .++.. ..........++|+|
T Consensus 205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDH 283 (330)
T ss_pred eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECC
Confidence 742 111 2233221 112235889999999888855 67888732111000 00111 111122456899999
Q ss_pred CCCEEEEEc--CCcEEEEe
Q 010206 498 SENSIACAA--SNSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~--~~~~~i~~ 514 (515)
||++|+++. ++.+.+|.
T Consensus 284 dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 284 SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCEEEEEEccCCcEEEEE
Confidence 999999876 55688874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-16 Score=150.12 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=179.9
Q ss_pred cCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
.|+|.+..++.++.|. ..|..++-++ +.+.+|++|+.||+|++|+.+.-.....
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~------------- 1086 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGG------------- 1086 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeecC-CCCceEEEecCCceEEEeeehhhhcCcc-------------
Confidence 3677777778788887 7788888863 4557999999999999999875321100
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc-ccccceeeeeeccCcCCe-EEEEe
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET-NLVAGCRRIYAHAHDYHI-NSISN 242 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v-~~~~~ 242 (515)
...+.+.+++.+........+...+.++.++.||.|++.+ +...+. .....+.+..-....+.+ ..-++
T Consensus 1087 -------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~--id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1087 -------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR--IDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred -------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE--ccccccccceeeeeecccccCCCceEEeecc
Confidence 0001345555555555555555566668889999999988 333111 111111111111122233 33344
Q ss_pred cC-CCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccc
Q 010206 243 NS-DGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 243 ~~-~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
.. .+. .++.+ .-+.|..||+++......+ ......+.|++++.+|.+ ++++.|+..|.+.+||+|-+..+
T Consensus 1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred cccccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCcee
Confidence 33 233 56666 7899999999876544322 223346789999999998 89999999999999999987654
Q ss_pred ccccceeeeccCCCccccccccccceeEEEEcc---CCCEEEE-Ec-C-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 320 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s-~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.. |+ .++..+|+.+..+| .....++ +. . +.|.+|++.+ +....++...... ..+...
T Consensus 1231 ~s----w~-----------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~ 1293 (1431)
T KOG1240|consen 1231 LS----WE-----------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYA 1293 (1431)
T ss_pred ec----cc-----------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhh
Confidence 22 22 22336777777776 3345555 44 3 8999999997 5655555544221 111111
Q ss_pred c-cC----CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 394 Y-EN----DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 394 ~-~~----~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
. .+ ........+++..-+.++.+|+.|..|+.||....
T Consensus 1294 ~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1294 LPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1 11 11111224455556678999999999999998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-13 Score=134.28 Aligned_cols=321 Identities=21% Similarity=0.325 Sum_probs=209.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCcee-ecCCC-ccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGG-CGERN 189 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~-~l~~~ 189 (515)
..+..+.+ ...+..++.++.|+.+.+|+...+. .......... ..+. .+.+ .+++. .+
T Consensus 66 ~~i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~--- 126 (466)
T COG2319 66 DSITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVS-------KLALSSPDGNSIL--- 126 (466)
T ss_pred ceEEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------Ccee-------eEEEECCCcceEE---
Confidence 78999999 4556688888899999999999885 2222222110 0111 2233 55555 22
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C-CCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~ 267 (515)
......++.+.+|+ ... ..........|...|..++|+|++..++++ . |+.+++|++.....
T Consensus 127 --------~~~~~~d~~~~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (466)
T COG2319 127 --------LASSSLDGTVKLWD--LST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190 (466)
T ss_pred --------eccCCCCccEEEEE--ecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence 13345588999999 332 011222247899999999999999988887 5 99999999986433
Q ss_pred ccceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. .+.+|...+.+++|+|++ . .+++++.|+.|++||...+..... .+.+|....
T Consensus 191 ~~--------~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~~i~~wd~~~~~~~~~---------------~~~~~~~~~- 245 (466)
T COG2319 191 LS--------TLAGHTDPVSSLAFSPDG-GLLIASGSSDGTIRLWDLSTGKLLRS---------------TLSGHSDSV- 245 (466)
T ss_pred EE--------eeccCCCceEEEEEcCCc-ceEEEEecCCCcEEEEECCCCcEEee---------------ecCCCCcce-
Confidence 32 445689999999999998 5 555559999999998875543211 133444443
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
...|+|++.++++++. +.+++|++......+..+..|... +.++.|+|++..+++++.|+.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~d~~~~~ 310 (466)
T COG2319 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---------------VLSVAFSPDGKLLASGSSDGTVRL 310 (466)
T ss_pred eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---------------EEEEEECCCCCEEEEeeCCCcEEE
Confidence 3389999988887654 999999998633323333333222 458899999999888998999999
Q ss_pred EecCCCCcceeee--ccCCCceeeEEECCCCCeeEee-cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEE
Q 010206 426 FGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 502 (515)
Q Consensus 426 w~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 502 (515)
|+..+.... ... ..|...+..+.+.+++..++.+ ..|+.+.+....... ..........+..+.+++ ...+
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~ 384 (466)
T COG2319 311 WDLETGKLL-SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK----PLKTLEGHSNVLSVSFSP-DGRV 384 (466)
T ss_pred EEcCCCceE-EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc----eeEEecCCceEEEEEECC-CCCE
Confidence 988876433 333 3777788888884332455555 677777762111111 111111122288999999 5333
Q ss_pred EE--EcCCcEEEEe
Q 010206 503 AC--AASNSLYMYY 514 (515)
Q Consensus 503 a~--~~~~~~~i~~ 514 (515)
.. ..+..+.+|.
T Consensus 385 ~~~~~~~~~~~~~~ 398 (466)
T COG2319 385 VSSGSTDGTVRLWD 398 (466)
T ss_pred EEEecCCCceEEEe
Confidence 33 3455577764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=137.58 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=144.8
Q ss_pred EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 238 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
..++|+.+|..|+++ .||++|+|+........ ....|...|.++.|+||+ .+|++-+.| ..++|+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999998 89999999966554432 445688999999999999 899999999 9999999998
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCC---CEEEE--EcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILS--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~s--~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
..+.+.. .++. ...+..+.|+.|+ .+.+. ... +.|+.||+.....- ..+......
T Consensus 218 ~~~a~~t-~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALARKT-PFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhhcC-Cccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 5433211 0111 1346677888766 33322 334 78888887642221 111111100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.....|.+++.++||++++.|+.||.|-|++..+-+.....-+.|...|+.+.|+|+.+++++.+.|....+
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 001124599999999999999999999999999876666777899999999999999999999888887777
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=128.37 Aligned_cols=243 Identities=14% Similarity=0.157 Sum_probs=152.4
Q ss_pred cCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccC-CceEEEEEecCCCcEEEEEec---
Q 010206 232 AHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSS--- 304 (515)
Q Consensus 232 ~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~--- 304 (515)
++...++.+.|.. ....+.++ .||+|++||++...+...+ ....+. .+..+++.+..+ +++++|..
T Consensus 68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~------~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~ 140 (376)
T KOG1188|consen 68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI------SWTQQSGTPFICLDLNCKK-NIIACGTELTR 140 (376)
T ss_pred CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe------eccCCCCCcceEeeccCcC-CeEEecccccc
Confidence 3444455555544 45567777 8999999999987665432 334444 456777777666 78888764
Q ss_pred -CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCC---Cee
Q 010206 305 -KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSG---PVA 378 (515)
Q Consensus 305 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~---~~~ 378 (515)
+-.+.+||+|..+... ......|...|+++.|+| +.++|++|+ ||.|.+||+..+.. ++.
T Consensus 141 s~A~v~lwDvR~~qq~l--------------~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLL--------------RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CceEEEEEEeccccchh--------------hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 6679999999876421 122456788999999999 667888887 59999999975311 111
Q ss_pred eEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecCCCCcceeeeccC------------CCce
Q 010206 379 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPM 445 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------------~~~v 445 (515)
++ .+. ..|..+.|..++ +.|.+-+...+..+|+++.+.+.. .++.. .+.+
T Consensus 207 vi-N~~---------------sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 207 VI-NHG---------------SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred hh-ccc---------------ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchhhhHHhhhhhhhe
Confidence 11 111 124588998877 358888899999999999886432 22211 0011
Q ss_pred eeEEECCCCCeeEeecC-CCeEEE---e--cCCCCCccccCCccc-cccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 446 RRQVQTPSRPSRPLGSL-SGVVRR---V--KGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 446 ~~~~~~~~~~~l~s~~~-d~~v~l---~--~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
-......++.+.+.++. .++.++ . ...... .....+. +|...|+++.|...+..+.+|+++| +.+|-
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~--~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL--TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeeccccccc--CccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11111223334444444 555555 1 111111 1111222 4677889999999999999999887 66664
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.6e-16 Score=145.95 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=111.1
Q ss_pred EEEecCCCCEEEEe--CCCcEEEE--eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCCeEEEEec
Q 010206 239 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDM 313 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~ 313 (515)
.++|+|||+.|+.+ .++.+.|| |+.++.. . .+..+...+....|+||| +.|+ ++..++...+|++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~--------~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S--------QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E--------eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEE
Confidence 57899999988875 47766655 5544331 1 334456667899999999 5555 4456788889987
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
....... ..+ ++.. ....|+|||++|+..+...+.+||+.+ ++.. .+.... .
T Consensus 322 ~~~~~~~---~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~-~lt~~~-~------- 373 (429)
T PRK01742 322 SASGGGA---SLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTE-VLSSTF-L------- 373 (429)
T ss_pred ECCCCCe---EEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeE-EecCCC-C-------
Confidence 5432110 000 1112 356899999999886654567799875 4332 221111 0
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC-CCcceeeeccCCCceeeEEECCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE-GSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
...+.|+|||++|+.++.++...+|++.+ .+.....+..|...+...+|+|-
T Consensus 374 --------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 --------DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 12678999999999999999888887632 12455677788887888888875
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=145.58 Aligned_cols=295 Identities=14% Similarity=0.166 Sum_probs=183.4
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
-..+.|+|..+ .++++...-.|++||.+.++...-+.....+ ...|. .+.+. ....
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~t~Vs-------~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----DTRVS-------DLELI----------NEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCC-----CCccc-------eeeee----------cccc
Confidence 45567777655 7888887789999999988764443322111 01111 22222 1122
Q ss_pred CCCCCCCCCcccEEeeeeeeccccccccc----ceeeeeeccCcCCeEEEEecCC-CCEEEEeCCCcEEEEeCCCCCccc
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSF 269 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~~~~~~ 269 (515)
..++++++.||.|+||+= +.+....... ......+.+..+.=.-+.|... |.++++|+-..|+|||........
T Consensus 1123 ~aLlLtas~dGvIRIwk~-y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKD-YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hhheeeeccCceEEEecc-cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 235599999999999981 1111111100 0000001111111133567665 445555688999999998665443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc--eeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~ 347 (515)
.+. .+....|+++.-+-.++++++.|..||.+++||.|....- . .....+.|... |..
T Consensus 1202 diP-------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s------------~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1202 DIP-------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-S------------LVCVYREHNDVEPIVH 1261 (1387)
T ss_pred ecc-------cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-c------------cceeecccCCccccee
Confidence 221 2234557777655444489999999999999999875421 1 12224445555 999
Q ss_pred EEEccCCCE-EEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 348 IKFARNGRH-ILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 348 ~~~s~~~~~-l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
+.+.+.|-- |++|+. |.|++||++++ .....+...|-.... ..+++..+++...+|+|+. +.|+
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs------------~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS------------ALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc------------cceeeeeccCCCeeeecCc-ceEE
Confidence 999886654 888875 99999999973 222222222221100 1458999999999999998 9999
Q ss_pred EEecCCCCcceeeec-------cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 425 VFGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 425 iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
||++.. ..+..++ .....+.+++|+|-.-.+|.|+.|.+|.++
T Consensus 1329 Iy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1329 IYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred EEecCh--hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 999973 3333333 223567899999999999999999999994
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=123.54 Aligned_cols=211 Identities=9% Similarity=0.183 Sum_probs=154.2
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.++..++++..|+. |-+++.+.+-|-+..|||++++.. +...+.+-+|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------------~~vkTQLIAHD---------- 196 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------------GTVKTQLIAHD---------- 196 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------------cceeeEEEecC----------
Confidence 45778999999998 778999999999999999988732 22446678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|..|+|.. ...+.|++++.||.+|+||++..+-..+..
T Consensus 197 --KEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIY------------------------------------- 236 (364)
T KOG0290|consen 197 --KEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIY------------------------------------- 236 (364)
T ss_pred --cceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEe-------------------------------------
Confidence 7799999974 334589999999999999998764222211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEE-e-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFIS-A-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s-~-~d~~i~iwd~~~~~~ 267 (515)
. + .....+...++|++ |.+++++ + +...|.+.|++.+..
T Consensus 237 --------------------E----~--------------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t 278 (364)
T KOG0290|consen 237 --------------------E----D--------------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT 278 (364)
T ss_pred --------------------c----C--------------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence 0 0 01134566788887 4556666 4 688999999997765
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... .+++|.+.|+.++|.|..+..|.+++.|..+.+||+.+... .....+...+. -.+.|..
T Consensus 279 pva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~----------~~~~dPilay~-a~~EVNq 340 (364)
T KOG0290|consen 279 PVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR----------ENGEDPILAYT-AGGEVNQ 340 (364)
T ss_pred cee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc----------cCCCCchhhhh-ccceeee
Confidence 542 78899999999999999889999999999999999976432 00001111111 3367999
Q ss_pred EEEcc-CCCEEEEEcCCeEEEE
Q 010206 348 IKFAR-NGRHILSRDYMTLKLW 368 (515)
Q Consensus 348 ~~~s~-~~~~l~s~~~~~i~iw 368 (515)
+.|++ .+..++.+..+++.+.
T Consensus 341 i~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred eeecccCCCEEEEEecCeeeEE
Confidence 99996 6778887766555543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=121.35 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=166.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
-.+.-++|++.-..+|++..|-.|++|+-..... ..++... +..|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcce
Confidence 4578899999777889999999999999665221 1122111 1559
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
++++|-|-.. +.|++|+.. -|.+|.....-. ...
T Consensus 144 tclawRPlsa-selavgCr~-gIciW~~s~tln~~r~------------------------------------------- 178 (445)
T KOG2139|consen 144 TCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANRN------------------------------------------- 178 (445)
T ss_pred eEEEeccCCc-ceeeeeecc-eeEEEEcCcccccccc-------------------------------------------
Confidence 9999977443 467777764 599998764211 000
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~ 272 (515)
..+...+...+.. -.+| ..|+++.|++||..++++ .|..|+|||+.++....-
T Consensus 179 ----~~~~s~~~~qvl~------------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-- 233 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ------------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-- 233 (445)
T ss_pred ----cccccccchhhee------------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--
Confidence 0111111111111 1355 789999999999999997 799999999998765421
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
+ ....+.+.-+.|+||+ ..|+.+.-|+..++|+....-...+ ..-..+.|...+|+|
T Consensus 234 --~----~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----------------w~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 234 --I----PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----------------WILGSGRVQTACWSP 290 (445)
T ss_pred --c----ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----------------eeccCCceeeeeecC
Confidence 1 1235668899999999 8999999999999996544321111 011125799999999
Q ss_pred CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccc--ccccccc-----C--CCccceeeEEEcCCCCEEEEecCCC--
Q 010206 353 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP--KLCDLYE-----N--DSIFDKFECCLSGDGGRVATGSYSN-- 421 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~--~~~~~v~~~~~s~~~~~l~s~s~dg-- 421 (515)
+|++|.....+.-++|.+...++..... ....... .+.++.+ . -+-.+..+++|+|.|.+||+.-..+
T Consensus 291 cGsfLLf~~sgsp~lysl~f~~~~~~~~-~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 291 CGSFLLFACSGSPRLYSLTFDGEDSVFL-RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred CCCEEEEEEcCCceEEEEeecCCCcccc-CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCch
Confidence 9999887766677788776533332211 1111000 0111111 0 0111345899999999999764432
Q ss_pred ------cEEEEecCC
Q 010206 422 ------LFRVFGCSE 430 (515)
Q Consensus 422 ------~i~iw~~~~ 430 (515)
.|.+||...
T Consensus 370 v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 370 VLLCKLHISRFDTRK 384 (445)
T ss_pred hhhhhhhhhhhcccc
Confidence 355566653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=143.45 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=147.9
Q ss_pred cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccc
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
+..|.+|| ..... .+. +..|...+.+..|+|||+.|+.. . +..|++||+.+++... +. .+
T Consensus 183 ~~~i~i~d--~dg~~-------~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~ 246 (429)
T PRK01742 183 PYEVRVAD--YDGFN-------QFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SF 246 (429)
T ss_pred eEEEEEEC--CCCCC-------ceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cC
Confidence 46788777 22211 111 35677789999999999999875 2 3479999998654321 11 22
Q ss_pred cccCCceEEEEEecCCCcEEEEE-ecCCeEEEE--ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
.++ ...++|+||| +.|+.+ +.+|.+.|| |+.++.. .. +..+...+....|+|||+.
T Consensus 247 ~g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~ 305 (429)
T PRK01742 247 RGH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP-----SQ------------LTSGAGNNTEPSWSPDGQS 305 (429)
T ss_pred CCc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe-----Ee------------eccCCCCcCCEEECCCCCE
Confidence 223 3468999999 666665 468876665 5544432 11 2223356788999999998
Q ss_pred EEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 357 ILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 357 l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
|+..+ . +...||++...+.....+ .+.. ....|+|||++|+..+.++ +.+||+.++...
T Consensus 306 i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 306 ILFTSDRSGSPQVYRMSASGGGASLV-GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEe-cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence 87654 3 788999887533333322 1211 1567999999998887765 566999887433
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe-----cCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----KGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
.. .... ....+.|+|+++.+++++.++...++ ++.... ....+.+.+..++|||-.
T Consensus 367 ~l-t~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~------~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 367 VL-SSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA------RLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred Ee-cCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE------EccCCCCCCCCcccCCCC
Confidence 21 1221 23567899999999999988877651 222211 222456778999999853
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-15 Score=144.70 Aligned_cols=240 Identities=12% Similarity=0.181 Sum_probs=142.8
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
.+..|++... ...+...|...|..++.++.. .+|++|+.||+|++|+...-...+ ..++
T Consensus 1030 p~~gW~p~G~----lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----------------~s~r 1089 (1431)
T KOG1240|consen 1030 PPPGWNPRGI----LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----------------GSAR 1089 (1431)
T ss_pred CCCCCCccce----EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----------------ceee
Confidence 3445777643 334567899999999988855 999999999999999976433210 0111
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
...++..- ..++.++..++. +..+++++.||.|++.++.....................|.+..
T Consensus 1090 S~ltys~~------------~sr~~~vt~~~~--~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~-- 1153 (1431)
T KOG1240|consen 1090 SELTYSPE------------GSRVEKVTMCGN--GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVS-- 1153 (1431)
T ss_pred eeEEEecc------------CCceEEEEeccC--CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEE--
Confidence 11112211 266888888654 55899999999999999876321111100000000000111110
Q ss_pred CcCCCceeecCCCccccccccCCCC-CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASND-SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
.-++.. .... .++.+..-+.+..||+ ......-..+ .....+.|++++.+|.+.+++
T Consensus 1154 ----m~a~~~-----------~~~S~~lvy~T~~~~iv~~D~--r~~~~~w~lk-----~~~~hG~vTSi~idp~~~Wlv 1211 (1431)
T KOG1240|consen 1154 ----MHAFTA-----------IVQSHVLVYATDLSRIVSWDT--RMRHDAWRLK-----NQLRHGLVTSIVIDPWCNWLV 1211 (1431)
T ss_pred ----eecccc-----------cccceeEEEEEeccceEEecc--hhhhhHHhhh-----cCccccceeEEEecCCceEEE
Confidence 001111 1111 3366667778888883 2221110000 123447899999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC--cEEEEEe--cCCeEEEEecCccc
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSA 317 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~--~dg~i~~wd~~~~~ 317 (515)
.| ..|.+.+||++-....... . ..+..+|+.+..+|..+ ...++++ ..+.+.+|++.+|.
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw------~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSW------E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred EecCCceEEEEEeecCceeecc------c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 99 8999999999855443221 2 22447788777776543 3444444 47889999999884
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.9e-15 Score=123.12 Aligned_cols=263 Identities=14% Similarity=0.204 Sum_probs=179.2
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+|+|.+|++|+..+|++..+..|.||.....+. +....++..|. ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------WEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------ceeceehhhhC------------cc
Confidence 47899999999999999999999999999876551 33556788888 88
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEc-cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
|+.|+|.|. .+.|++++.|+.-++|.. ..++.+....
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999665 448999999999999987 3333222211
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+..+...++++.|+|.++.|++| ....|.+|-++..+.-.-
T Consensus 96 ------------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV-- 137 (361)
T KOG1523|consen 96 ------------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV-- 137 (361)
T ss_pred ------------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh--
Confidence 24566889999999999999999 688888988775432100
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
....-..+...|.++.|+|++ -+++.|+.|+..|+|..-- +..+.+..+ +|
T Consensus 138 --sKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayI--------K~Vdekpap------------------~p 188 (361)
T KOG1523|consen 138 --SKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYI--------KGVDEKPAP------------------TP 188 (361)
T ss_pred --hhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEee--------eccccCCCC------------------CC
Confidence 000112357789999999998 8999999999999987522 111111100 11
Q ss_pred CCCEEEEEcCCeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDYMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|+-+++ +..+..+....+. +..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 189 ---------------Wgsk~PFG~lm~E~~~~ggw---------------vh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 189 ---------------WGSKMPFGQLMSEASSSGGW---------------VHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ---------------CccCCcHHHHHHhhccCCCc---------------eeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 111111 2222233222222 458999999999999999999999998765
Q ss_pred CcceeeeccCCCceeeEEECCC----------CCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~~~d~~v~l 468 (515)
.+....+....-|..++.|-.+ ++.+.+.+++|....
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~ 285 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSF 285 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceee
Confidence 4444454444456666655322 456666666654433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-15 Score=123.23 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=196.3
Q ss_pred ccceEEEEECCCCCeEEe-ecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLAT-GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~las-g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-+.|.-+.|+.|..+++. ...++.|.+|++...+ +. ..+.... .
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------------------w~--ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------------------WY--CKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce---------------------eE--EEeccCC------------C
Confidence 366788999988776554 5688899999986543 22 2222222 6
Q ss_pred eeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.+.+++|+ ++|+ .|.++..|-.|.+|.+.+.+...+.... ..+. ..+|.|||+....+...
T Consensus 93 gls~~~WS--PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK---------~~~k-------g~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISWS--PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK---------TNVK-------GYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeEC--CCcceEeeeecceeEEEEEEeccceeEEecccc---------cCce-------eEEECCCCceeeeeecc
Confidence 79999995 5564 5555677999999999987755443221 1111 77999999987433222
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeC---CCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD---DLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---d~~i~iwd~~~~~~~~ 269 (515)
...|++-..+. +-|. ..+. ..-.....+.+.|+|||..|++=+ +-.|..|.
T Consensus 155 DCkdyv~i~~c----~~W~-------------ll~~-f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-------- 208 (447)
T KOG4497|consen 155 DCKDYVQISSC----KAWI-------------LLKE-FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-------- 208 (447)
T ss_pred cHHHHHHHHhh----HHHH-------------HHHh-cCCCcccccCceECCCCcEEEEecchhhheeeeee--------
Confidence 22221110000 0011 0111 122345567899999998877531 22222221
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc--------------------------
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-------------------------- 323 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------------- 323 (515)
-.-.+..++|+|-+ ++|+.|+.|+.+|+.+--+-+...+..
T Consensus 209 ------------~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~ 275 (447)
T KOG4497|consen 209 ------------RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHH 275 (447)
T ss_pred ------------eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccc
Confidence 13457889999988 899999999999886533221110000
Q ss_pred ------------------ceeeeccCCCcccc------ccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCC
Q 010206 324 ------------------KLFEEQEAPGTRSF------FTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGP 376 (515)
Q Consensus 324 ------------------~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~ 376 (515)
..++....+....+ +..-...+.-++|++|..++++..| +.+.+||+++ .+.
T Consensus 276 cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l 354 (447)
T KOG4497|consen 276 CLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKL 354 (447)
T ss_pred ccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhh
Confidence 00000000000000 1112346778999999999999765 8999999985 443
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
...+. .... |....|+|....|+.+....++++|.... +...-.....-.|..+.|..+|..
T Consensus 355 ~avLi-Qk~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 355 HAVLI-QKHP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred hhhhh-hccc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcE
Confidence 33332 2222 34889999998888887778899999873 343333444478889999999999
Q ss_pred eEeecCCCe
Q 010206 457 RPLGSLSGV 465 (515)
Q Consensus 457 l~s~~~d~~ 465 (515)
++..+.|..
T Consensus 417 i~l~~kDaf 425 (447)
T KOG4497|consen 417 IVLCGKDAF 425 (447)
T ss_pred EEEEcCCce
Confidence 888887753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-13 Score=116.46 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=93.4
Q ss_pred CcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe-E
Q 010206 233 HDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-I 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i 308 (515)
+...+.++++++.+.+++. + ..|.|.+||..+-+... .+..|.+.+.+++|+++| .+||+++..|+ |
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------~I~aH~~~lAalafs~~G-~llATASeKGTVI 198 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN--------TINAHKGPLAALAFSPDG-TLLATASEKGTVI 198 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee--------EEEecCCceeEEEECCCC-CEEEEeccCceEE
Confidence 4456777778888888887 3 58999999998665443 557899999999999999 99999999987 7
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~ 372 (515)
|+|.+.+|+...+ |.-.. ....|.+++|+|++++|++.++ ++|+||.+..
T Consensus 199 RVf~v~~G~kl~e----FRRG~----------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 199 RVFSVPEGQKLYE----FRRGT----------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEcCCccEeee----eeCCc----------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 8999999876433 22111 1256999999999999999877 9999999874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-14 Score=119.40 Aligned_cols=238 Identities=12% Similarity=0.097 Sum_probs=166.9
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+|+|.+|++|+..++.+ ....|.||.....+.-.. ..++..|...|+.|+|+|.. +.|++++.|+.-++|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence 3789999999999999999 888999999875542211 13678899999999999998 8999999999999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEe-eeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQ-VHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~-~~~~~~~ 388 (515)
...+..-. +..++..|....+++.|+|.++.+++|+. ..|.||=+..+..- .+.++ .+..
T Consensus 84 ~~~~~~Wk-------------ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS--- 147 (361)
T KOG1523|consen 84 QPSGGTWK-------------PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS--- 147 (361)
T ss_pred cCCCCeec-------------cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc---
Confidence 85443211 11224445678999999999999999987 88888887642111 00010 0011
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC-----------------CcceeeeccCCCceeeEEEC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~-----------------~~~~~~~~~~~~~v~~~~~~ 451 (515)
.|+++.|+|++-+|++|+.|+..++|..--. +++..++......+..+.|+
T Consensus 148 ------------tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 148 ------------TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred ------------ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 1569999999999999999999999865211 01112222345678899999
Q ss_pred CCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 452 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
|+|..|+-.+.|.++.+.+...+.+. ....... .-+.+++.|-.+...++.|-+
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~-v~~~~~~-~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSER-VQSVATA-QLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchh-ccchhhc-cCCceeeEeecCCceeecCCC
Confidence 99999999999999999443333210 1111111 256678888766555544433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-14 Score=113.13 Aligned_cols=246 Identities=12% Similarity=0.133 Sum_probs=158.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccc---ccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQET---NLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
.-+++|.++++ +.|+.+|.|-+.. +..... ...++.......+|.++|..++|. ..+|++|
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~s--l~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLS--LKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEE--ehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec
Confidence 55788888888 9999999999988 443322 222222222237999999999998 5578888
Q ss_pred CCCcEEEEeCCCCCc---ccceecccCcccc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 253 DDLRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.||.|+=|..+...+ ...++.+++..-. ..-..|+++-..|.. +-++.++.|+.+.-||+++|+..
T Consensus 79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~-------- 149 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ-------- 149 (325)
T ss_pred cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE--------
Confidence 889999998765433 1222222221101 112457888899987 56666779999999999999863
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..+++|+..|.++.--.....+++|+ ||++++||.++ ++.++.+........ +.. +.. .+-.+
T Consensus 150 --------r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-lRp--~~g----~wiga 213 (325)
T KOG0649|consen 150 --------REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-LRP--DWG----KWIGA 213 (325)
T ss_pred --------EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhh-cCc--ccC----ceeEE
Confidence 34788999999999855445566665 59999999997 888777754433210 000 000 11244
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
..-+..+|+.|+. ..+.+|.+++.++. +++. -..++..+.|-. ..+++++....|.
T Consensus 214 la~~edWlvCGgG-p~lslwhLrsse~t-~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~ 269 (325)
T KOG0649|consen 214 LAVNEDWLVCGGG-PKLSLWHLRSSEST-CVFP-IPARVHLVDFVD--DCVLIGGEGNHVQ 269 (325)
T ss_pred EeccCceEEecCC-CceeEEeccCCCce-EEEe-cccceeEeeeec--ceEEEecccccee
Confidence 4556678887664 57899999976433 3332 123444555543 3556666544444
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=144.98 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=175.2
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+.+|...|.|+.|...|.++++| +|..++||..++.... ....+|.+.|+.++.+.+. .++++++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------As~rGhs~ditdlavs~~n-~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------ASCRGHSGDITDLAVSSNN-TMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------ccCCCCccccchhccchhh-hhhhhcccCceE
Confidence 47899999999999999999999 8999999998876654 3778999999999999987 899999999999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC-------------CC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD-------------SG 375 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~-------------~~ 375 (515)
++|.+..+..+ .++.+|++.|++++|+|-. .++.+|++++||.+-. +.
T Consensus 257 rvWrl~~~~pv----------------svLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 257 RVWRLPDGAPV----------------SVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred EEEecCCCchH----------------HHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccccc
Confidence 99999988653 3578999999999999965 4455699999998720 00
Q ss_pred CeeeEeeeccccccccccc--cCCCccceeeEEEcCCC-----------CEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 376 PVATFQVHEHLRPKLCDLY--ENDSIFDKFECCLSGDG-----------GRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-----------~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.+..+....... ...... ........-.++|...+ .+.+++-.+-.+.+|++.++ .+.+.+.+|.
T Consensus 318 ~~~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghs 395 (1113)
T KOG0644|consen 318 LVDSILFENNGD-RFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHS 395 (1113)
T ss_pred ceeeeecccccc-ccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccc
Confidence 011111000000 000000 00000111122222222 23445556677889999988 6668999999
Q ss_pred CceeeEEECCCCCe-eEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEE
Q 010206 443 NPMRRQVQTPSRPS-RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMY 513 (515)
Q Consensus 443 ~~v~~~~~~~~~~~-l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~ 513 (515)
.++..+.++|-... ..+++.||...+++-++-.+ +.....+ ...+...+||+||..+++..+ +.++|+
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCc--ceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 99999999997765 57788999999944443321 2222233 466788999999999997765 446554
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-14 Score=120.54 Aligned_cols=244 Identities=11% Similarity=0.141 Sum_probs=153.0
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+..++|++.-..|+++ .|-.|++||-.. +....+. ...+..|++++|.|.+...|+.|+..| |.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-------s~sQrnvtclawRPlsaselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-------SVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-------chhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence 457789999976667777 799999999775 2222110 113566999999999878888888765 789986
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeE-eeeccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATF-QVHEHLRPKL 390 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 390 (515)
.......+..+... ..........+| .+|++++|.+||..+++++. ..|.|||..+ +..+... .+..+
T Consensus 170 s~tln~~r~~~~~s--~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMS--THHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Cccccccccccccc--ccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 54322221111000 000001112334 68999999999999999763 8999999987 3332222 22211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE-
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR- 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l- 468 (515)
+.-+.|||||.+|+.++-|+..++|+.... .......-....+..-+|+|.|++|+.. +..-.+.-
T Consensus 241 -----------~slLkwSPdgd~lfaAt~davfrlw~e~q~-wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 241 -----------FSLLKWSPDGDVLFAATCDAVFRLWQENQS-WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred -----------eeeEEEcCCCCEEEEecccceeeeehhccc-ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 336899999999999999999999965533 1212222333488899999999976544 33333332
Q ss_pred -ecCCCCC--------ccccCCccc---------cccCCeeEEEEcCCCCEEEEEcCC
Q 010206 469 -VKGADNS--------ALDANGNAF---------DFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 469 -~~~~~~~--------~~~~~~~~~---------~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
..+.... ...+..++. -..+.+.+++|.|.|++||+.-..
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111110 000111110 124678999999999999987543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=133.50 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=165.1
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..|.++.|-.+.++||++....+++||-. +.... -+. ....|..+.|-|.. .+|++++..|.++.-|+.
T Consensus 171 Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElH--------Clk-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELH--------CLK-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVS 239 (545)
T ss_pred hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEe--------ehh-hcCchhhhcccchh-heeeecccCCceEEEeec
Confidence 45677888888889999988999999965 33221 112 24568899999998 899999999999999999
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+|+++.. +....+.+..++-+|-.-.+-.|.. |+|.+|...+ ..++..+..|.+.+.
T Consensus 240 ~GklVa~----------------~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~----- 297 (545)
T KOG1272|consen 240 TGKLVAS----------------IRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS----- 297 (545)
T ss_pred hhhhhHH----------------HHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcc-----
Confidence 9987643 2222356777888887778888866 9999999987 888888888887744
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
++++.++|+|++|.+.|..++|||++....+ .++.. ..+...+.+|..| ++..+....|.++.+..
T Consensus 298 ----------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 298 ----------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDAL 363 (545)
T ss_pred ----------eEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcccccccccc--ceeeecCCeeeeehhhh
Confidence 9999999999999999999999999977433 33333 3455666666543 44455556666622111
Q ss_pred CC--ccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 474 NS--ALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 474 ~~--~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.. ............+.|..+.|.|-...|-+|...|+
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 10 00111111223568999999999999988876663
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=129.77 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=128.7
Q ss_pred eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC-CcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~-~~~l~~~~~dg~ 307 (515)
+.+|.+-|+|+.|+.+|.+|++| +|-.+.|||.-..+.... --.+|...|.++.|-|.. .+++++|..|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 58999999999999999999999 899999999985554433 236799999999999842 368999999999
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEc-CCeEEEEEeeCCCCCeeeEeeecc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
|++||+...+.-. ..+........+..|...|..++-.|++ ..+.+++ ||+|+-+|++.+..+......+..
T Consensus 119 i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGG------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccccc------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999997643211 0111112233456688899999999988 5566666 499999999853333322222221
Q ss_pred ccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~ 429 (515)
.+. |. .......++.++|.. .+|+.|+.|-..++||.+
T Consensus 193 l~n-----y~-~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVN-----YN-PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHH-----hc-hhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111 11 111123478999965 578999999999999964
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=130.83 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=135.6
Q ss_pred cCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCC
Q 010206 232 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg 306 (515)
.+...+.+.+|+|||+.|+.. .+..|.+||+.+++.. .+....+.+..++|+||| +.|+. .+.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------~l~~~~~~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------EccCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence 455678999999999998863 2457999999865432 111122334568999999 65554 34455
Q ss_pred --eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEee
Q 010206 307 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+||+.+++... +..+...+....|+|||+.|+..++ +...||.+...+.....+..
T Consensus 266 ~~~I~~~d~~tg~~~~-----------------lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 266 SLNLYVMDLASGQIRQ-----------------VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CcEEEEEECCCCCEEE-----------------ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 58889998765311 1111235678899999998877543 55556654432333334432
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.... .....|+|||++|+..+.+ ..|++||+.++... .+... .......|+|||+.|+.
T Consensus 329 ~~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 329 EGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEE
Confidence 2211 1268899999998876543 35888999877433 23221 12346789999999999
Q ss_pred ecCCCeE---EE--ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 460 GSLSGVV---RR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 460 ~~~d~~v---~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
.+.++.. .+ .+|.... ....+.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~~------~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEECCCCCeE------ECccCCCCcCCcccCCC
Confidence 9887653 33 2233222 12235678889999983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=117.74 Aligned_cols=224 Identities=16% Similarity=0.194 Sum_probs=159.3
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeEEEEecCcccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTH 322 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~ 322 (515)
...|++| ++|.+.+|..+.+...-. ++..+.. ...+..+.-++..+.++++|+.. ..+.+||+.+.+.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---- 185 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---- 185 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc----cceeeec-CCceeeeccCCCCCceEecCchhcccceeeeeccccee----
Confidence 3366777 899999999874431100 0012222 34566777777777788889998 8899999988743
Q ss_pred cceeeeccCCCccccccccccceeEEEEccC--CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.|...+.+...--+ .-.-.++++.|-+. ...|++++. +.+++||.+.+.+|+..+......
T Consensus 186 --iw~aKNvpnD~L~L-rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~------------- 249 (412)
T KOG3881|consen 186 --IWSAKNVPNDRLGL-RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP------------- 249 (412)
T ss_pred --eeeccCCCCccccc-eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-------------
Confidence 33333222111000 01135788899886 788999987 999999999888888888766554
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
++++...|++++|++|..-|.+..||++.+......+++-...++.+..+|.++++|+++-|+.+|+.+.... .+
T Consensus 250 --is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr---kl 324 (412)
T KOG3881|consen 250 --ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR---KL 324 (412)
T ss_pred --ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc---hh
Confidence 4589999999999999999999999999885555668999999999999999999999999999999332220 11
Q ss_pred CCccccccCCeeEEEEcCCCC
Q 010206 480 NGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~ 500 (515)
..+ ...+..++.+-+.++-+
T Consensus 325 l~k-vYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 325 LHK-VYVKSRLTFILLRDDVN 344 (412)
T ss_pred hhh-hhhhccccEEEecCCcc
Confidence 111 11255667777766543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-13 Score=125.05 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=106.4
Q ss_pred EEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeEEEE--
Q 010206 239 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI-- 311 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~w-- 311 (515)
.+.|+|||+.|+.. .++ .|++||+++++.. .+..+...+....|+|+| +.|+..+. ++...+|
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEE
Confidence 46899999988764 344 5888999765432 222334557789999999 66665554 4444555
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+.++.. ..+. ..........|+|||++|+... + ..|.+||+.+ +. ...+.... .
T Consensus 317 d~~~g~~-----~~lt------------~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~- 375 (429)
T PRK03629 317 NINGGAP-----QRIT------------WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L- 375 (429)
T ss_pred ECCCCCe-----EEee------------cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C-
Confidence 5554432 1111 1112356788999999988743 2 4688888875 33 33332111 0
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCc---EEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~---i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....|+|||++|+..+.++. +.++++.. .....+..|...+...+|+|-
T Consensus 376 --------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 --------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --------------CCCceECCCCCEEEEEEcCCCceEEEEEECCC--CCeEECccCCCCcCCcccCCC
Confidence 115789999999998887764 67777753 333567777777778888763
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-12 Score=104.88 Aligned_cols=163 Identities=10% Similarity=0.201 Sum_probs=112.7
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEE
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLI 311 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~w 311 (515)
...+|.++.+.++ .|++.-.+.|++|.....-+....++. ........+++-..+. .+||. |-.-|.|++-
T Consensus 93 f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et-----~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIET-----RSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIV 164 (346)
T ss_pred eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeec-----ccCCCceEeecCCCCc-eEEEcCCCccceEEEE
Confidence 3467888888765 566677788999998743322222111 1112223333333232 34444 3346899999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|+...+.- +..++.+|.+.|.|++++.+|..+|+++. | -|||||..+ +.+++.++......
T Consensus 165 dL~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A-- 227 (346)
T KOG2111|consen 165 DLASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA-- 227 (346)
T ss_pred EhhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh--
Confidence 98765421 23457889999999999999999999986 4 579999997 88887776433221
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.+.+++|||++.+|+.+|+.|+|+||.++..
T Consensus 228 -----------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 -----------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -----------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2569999999999999999999999999864
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.2e-14 Score=124.28 Aligned_cols=298 Identities=10% Similarity=0.128 Sum_probs=198.4
Q ss_pred CCCccccccccccchhhhhcccccccccc----c------ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccc
Q 010206 5 GGSSEAAAQPLEWKFSQVFGERTAGEEVQ----E------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74 (515)
Q Consensus 5 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----h------~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~ 74 (515)
.|.-++...+.+|++.|- +-....++. | .-.-..+.++.+|++|+.|+..|.|-.+|+.+....
T Consensus 91 ~G~le~e~~EkT~~v~Q~--~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---- 164 (545)
T KOG1272|consen 91 AGYLEAEGLEKTYKVRQD--DIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---- 164 (545)
T ss_pred CCcccccCCcceeeeEHh--hhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee----
Confidence 466667778889988773 111111111 1 223456889999999999999999999999887753
Q ss_pred cCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
.++.-. +.|.++.|... . .+++....+.+.+||-..-++.++...
T Consensus 165 -------------------~Ei~v~-------------Etv~Dv~~LHn--e-q~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 165 -------------------FEINVM-------------ETVRDVTFLHN--E-QFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred -------------------eeeehh-------------hhhhhhhhhcc--h-HHHHhhhhceEEEecCCCcEEeehhhc
Confidence 222222 67999999643 3 355556678899999887776655443
Q ss_pred cCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc
Q 010206 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD 234 (515)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
. .+. .+.|.|.--.| ++++..|.++--|| ...+. ... +....
T Consensus 210 ~----------~v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~DV--S~Gkl------Va~-~~t~~ 251 (545)
T KOG1272|consen 210 I----------RVA-------RLEFLPYHFLL------------VAASEAGFLKYQDV--STGKL------VAS-IRTGA 251 (545)
T ss_pred C----------chh-------hhcccchhhee------------eecccCCceEEEee--chhhh------hHH-HHccC
Confidence 2 222 56777776666 88899999997773 22221 111 13344
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.+..++-+|-.-.+-+| ..|+|.+|.....+.+. .+..|.++|.+|++.++| +++++.+.|+.++|||+
T Consensus 252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDL 322 (545)
T ss_pred CccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEeee
Confidence 677788889999899999 89999999998777664 456799999999999999 99999999999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCC--CCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS--GPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~ 391 (515)
++..... ++.. .-+...+++|..| +||.+-...+.||.-...+ .....+..|...
T Consensus 323 R~~~ql~----t~~t-------------p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~----- 379 (545)
T KOG1272|consen 323 RNFYQLH----TYRT-------------PHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG----- 379 (545)
T ss_pred ccccccc----eeec-------------CCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccC-----
Confidence 9865322 1111 1356778888655 4444433589999643211 111222222211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..|..+.|.|-...|-.|-..|
T Consensus 380 --------~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 380 --------GPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred --------cccccceeccHHHeeeccccCC
Confidence 1245777877666555554444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=120.27 Aligned_cols=320 Identities=10% Similarity=0.083 Sum_probs=178.2
Q ss_pred CeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 48 ~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
+++ ++-..+|.|.|.|..+.+.. ..+.... ..-..+.| ++|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~-----------------------~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV-----------------------ARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE-----------------------EEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeEE-----------------------EEEcCCC------------CceeEEEe--cCCC
Confidence 444 34556889999998876632 3333221 22334566 6778
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC-Ccc
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVS 205 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~ 205 (515)
+++++++.|+.|.++|+.+.+..........+. .+++++||+++ ++++ ..+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~----------------~i~~s~DG~~~------------~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNPR----------------GIAVSPDGKYV------------YVANYEPG 100 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE----------------EEEE--TTTEE------------EEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCcc----------------eEEEcCCCCEE------------EEEecCCC
Confidence 899999999999999999998776665543322 78999999998 5554 678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.++| ..+.+.................++..+..+|....++.. +.+.|.+.|....+.... ......
T Consensus 101 ~v~v~D--~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g 171 (369)
T PF02239_consen 101 TVSVID--AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVG 171 (369)
T ss_dssp EEEEEE--TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--
T ss_pred ceeEec--cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeeccc
Confidence 999888 333322111000000001134577888888988866665 568888888776543321 112234
Q ss_pred CceEEEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE-------EEc--cC
Q 010206 284 EVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI-------KFA--RN 353 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------~~s--~~ 353 (515)
.......|+|++ ++++ ....+..|-++|..+++... .++.... .|..++..+ .|. ..
T Consensus 172 ~~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v~----~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~ 238 (369)
T PF02239_consen 172 RFPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLVA----LIDTGKK--------PHPGPGANFPHPGFGPVWATSGL 238 (369)
T ss_dssp TTEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEEE----EEE-SSS--------BEETTEEEEEETTTEEEEEEEBS
T ss_pred ccccccccCccc-ceeeecccccceeEEEeeccceEEE----Eeecccc--------ccccccccccCCCcceEEeeccc
Confidence 456788999999 5554 45567899999998876532 1221111 111222221 121 12
Q ss_pred CCEEEE-EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe----cCCCcEEEEec
Q 010206 354 GRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGC 428 (515)
Q Consensus 354 ~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----s~dg~i~iw~~ 428 (515)
+...++ -+...+.+||... .+.++++...... ..+..+|++++|... ...+.|.++|.
T Consensus 239 ~~~~~~~ig~~~v~v~d~~~-wkvv~~I~~~G~g----------------lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 239 GYFAIPLIGTDPVSVHDDYA-WKVVKTIPTQGGG----------------LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp SSSEEEEEE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred cceecccccCCccccchhhc-CeEEEEEECCCCc----------------ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 333322 1223445677665 6777777765433 168889999999987 45689999999
Q ss_pred CCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCC--eEEEecCC
Q 010206 429 SEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSG--VVRRVKGA 472 (515)
Q Consensus 429 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~--~v~l~~~~ 472 (515)
++. ....++. .....+..+.|+++|+.+..+.+++ .|.+++..
T Consensus 302 ~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 302 KTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp CGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred cCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 976 3334443 2233578999999999765555543 57775444
|
... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=113.54 Aligned_cols=148 Identities=19% Similarity=0.340 Sum_probs=102.3
Q ss_pred EEEEecCCCCEEEEe-C---C-------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE--Eec
Q 010206 238 NSISNNSDGETFISA-D---D-------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSS 304 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~ 304 (515)
..+.|+++|..|+.- . | +...+|.++........+ .+. ..++|.+++|+|++ +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 367899999988763 2 1 345666664444333322 111 24569999999999 55543 446
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCeeeE
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~~~~ 380 (515)
++.|.+||++... +..+. ...+..+.|+|+|++|+.++ - |.|.+||.+. .+.+...
T Consensus 82 ~~~v~lyd~~~~~-----i~~~~--------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 82 PAKVTLYDVKGKK-----IFSFG--------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred CcccEEEcCcccE-----eEeec--------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 7899999996322 12221 24678899999999999864 2 7899999985 5555554
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecC------CCcEEEEecC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
.... ++.++|+|||++|++++. |+.++||+..
T Consensus 142 ~~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3222 348999999999998764 7899999986
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-12 Score=117.76 Aligned_cols=164 Identities=17% Similarity=0.259 Sum_probs=122.8
Q ss_pred CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC-----ceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg 306 (515)
....++++..++-..+|++| .+|.|..||.++...... ++... ....|.+ .|+++.|+.+| -.+++|+.+|
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G 250 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT-LDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTG 250 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhhee-eeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCC
Confidence 44789999999999999999 799999999987654432 22111 2233333 49999999998 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CCEEEEEcCCeEEEEEeeCCCCCeeeEeeec
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.+.|||+++.+.....- .+..-+|..+.|.+. +..+++.+...++|||-.+ +++...+....
T Consensus 251 ~v~iyDLRa~~pl~~kd---------------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~ 314 (703)
T KOG2321|consen 251 SVLIYDLRASKPLLVKD---------------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTS 314 (703)
T ss_pred cEEEEEcccCCceeecc---------------cCCccceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccC
Confidence 99999999876532111 112257889999774 5677777779999999987 77766654332
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
. +..+|+-|++.+++++-.++.+..|=+..-
T Consensus 315 ~----------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 315 D----------------LNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred C----------------cCceeeecCCceEEEecCCCcceeEEcccc
Confidence 2 337899999999999999998888776654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-13 Score=127.07 Aligned_cols=217 Identities=14% Similarity=0.134 Sum_probs=134.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
..+...+.+.+|+||++.|+.. . ...|.+||+.+++.. .+....+.+...+|+||| +.|+ +.+.+
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG-~~la~~~~~~ 261 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR---------VVANFKGSNSAPAWSPDG-RTLAVALSRD 261 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCC-CEEEEEEccC
Confidence 3566778899999999998875 2 346999999876532 122233455688999999 5554 56778
Q ss_pred CeEEEEecC--cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEe
Q 010206 306 GSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 306 g~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~ 381 (515)
+...+|.+. .+.. .. +..+........|+|||+.|+..++ +...||.+...+.....+.
T Consensus 262 g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 262 GNSQIYTVNADGSGL-----RR------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCceEEEEECCCCCc-----EE------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 876776553 3321 11 1222234566789999998886543 6777777654333333332
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... ....+|+|||++|+..+.++ .|.+||+.++... .+... .......|+|+++.|+
T Consensus 325 ~~g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 325 FTGSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYIL 386 (427)
T ss_pred cCCCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEE
Confidence 22111 12578999999998776554 6999999877433 22222 2345789999999988
Q ss_pred eecCCCe-EEE----ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 459 LGSLSGV-VRR----VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 459 s~~~d~~-v~l----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
..+.++. -.+ .++.... ....+.+.+...+|+|-
T Consensus 387 ~~~~~~g~~~l~~~~~~g~~~~------~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 387 YATQQGGRSVLAAVSSDGRIKQ------RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEecCCCEEEEEEECCCCceE------EeecCCCCCCCCccCCC
Confidence 8776542 222 2222111 11123566788888874
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=122.99 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=129.6
Q ss_pred cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc-
Q 010206 243 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD- 320 (515)
Q Consensus 243 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~- 320 (515)
.+.+--++.| .-|.|.+.|.... ...++++. ...-.+..++++.|-|.+..+|+.+..+|.+.+||........
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3566677788 8899999988752 22121111 1111357899999999877889999999999999874321000
Q ss_pred ---cc---ccee-----eeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 321 ---TH---SKLF-----EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 321 ---~~---~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.. ...| ..+....+...+.--.+.|...+|+|||++||+-+ ||.++|||+.+ .+++..++.--+
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFG--- 333 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFG--- 333 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhcc---
Confidence 00 0011 11111111111222345899999999999999966 59999999986 444443322111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
...+++|||||+||++|++|-.|.||.+..+ .++..-++|.+.|..++|.|
T Consensus 334 ------------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 ------------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------------ceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 1349999999999999999999999999976 56678899999999999987
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=125.60 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=131.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
..+...+.+.+|+||++.|+.. . +..|.+||+.+++.. .+....+...+++|+|+|..++++.+.+|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~---------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE---------LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 4556778899999999998875 2 346999999765432 12223344457899999943444555555
Q ss_pred --eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--Ce--EEEEEeeCCCCCeeeE
Q 010206 307 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATF 380 (515)
Q Consensus 307 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~--i~iwd~~~~~~~~~~~ 380 (515)
.|.+||+.+++... +..+.......+|+|||+.|+..++ +. |.++|+.. + ....+
T Consensus 271 ~~~Iy~~d~~~g~~~~-----------------lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g-~~~~l 331 (433)
T PRK04922 271 NPEIYVMDLGSRQLTR-----------------LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-G-SAERL 331 (433)
T ss_pred CceEEEEECCCCCeEE-----------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-C-CeEEe
Confidence 58999998765311 1122233467899999999887653 44 55555543 2 23333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCee
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
..+... ....+|+|||++|+..+.++ .|.+||+.++... .+. +........|+|+|+++
T Consensus 332 t~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 332 TFQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ecCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEE
Confidence 222111 12689999999988665432 6899999876433 232 22234567899999988
Q ss_pred EeecCC-Ce--EEEe--cCCCCCccccCCccccccCCeeEEEEcC
Q 010206 458 PLGSLS-GV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 458 ~s~~~d-~~--v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+..+.+ +. +.++ ++.... ....+.+.+..++|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~~~------~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRVRQ------RLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCceE------EcccCCCCCCCCccCC
Confidence 776654 33 3332 222111 1112345677788887
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=122.07 Aligned_cols=296 Identities=12% Similarity=0.106 Sum_probs=193.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|+.+.|+ ..|..|++++.|..|.+||...++.+..
T Consensus 143 GcVntV~FN--~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------------------------------- 179 (559)
T KOG1334|consen 143 GCVNTVHFN--QRGDVLASGSDDLQVVVWDWVSGSPKLS----------------------------------------- 179 (559)
T ss_pred Cccceeeec--ccCceeeccCccceEEeehhhccCcccc-----------------------------------------
Confidence 999999994 5677999999999999999987653221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
|..+|...|....|-| +.+.++++ .||.+++=.+...+...
T Consensus 180 ------------------------------------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e 223 (559)
T KOG1334|consen 180 ------------------------------------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVE 223 (559)
T ss_pred ------------------------------------cccccccchhhhhccCCCCCcCceeccccCceeeeeecccccee
Confidence 1235555555555555 34456665 89999988775444332
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.. ..+..|.++|+.++.-|+.+..|.+++.|+.+.-+|++.+....... ..+...+. .-....++
T Consensus 224 ~t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~~~~~~------~v~L~~Ia 288 (559)
T KOG1334|consen 224 NT-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CREADEKE------RVGLYTIA 288 (559)
T ss_pred cc-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eeccCCcc------ceeeeeEe
Confidence 22 25567999999999999998999999999999999998875422211 11100000 02467888
Q ss_pred EccCCC-EEEEE-cCCeEEEEEeeCCCCC-----eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 350 FARNGR-HILSR-DYMTLKLWDINMDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 350 ~s~~~~-~l~s~-~~~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|... ++++| .+..+++||.+.-.+. +..+..|.- ..+....|++++|+.++.-|.+.=.|-.
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl---------~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL---------VEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc---------cccCcccceeEEecCCccceeeeecccc
Confidence 888555 55665 4589999998752111 222221111 0133344789999977665555556778
Q ss_pred EEEEecCCCC------------cceeeeccCCCc--eeeEE-ECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 423 FRVFGCSEGS------------AESTTLEASKNP--MRRQV-QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 423 i~iw~~~~~~------------~~~~~~~~~~~~--v~~~~-~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
|+++.-.-+. ...+.+++|.+. |..+- |-|...|++|||..|.|.+ |+....++....-+-.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi---W~K~t~eii~~MegDr 436 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI---WDKKTGEIIRFMEGDR 436 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE---EecchhHHHHHhhccc
Confidence 8998543221 112347788654 44454 4688899999999999999 3222212211111123
Q ss_pred CCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 488 MKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
..|+++.=+|--..||+++ +..+.||.
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeec
Confidence 3789999999999999776 55699996
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-12 Score=121.71 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=121.2
Q ss_pred cCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 232 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
.|...+.+.+|+|||+.|+.. .+..|.+||+.++... .+..+.+.+...+|+|||..++++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 455678899999999988875 2578999999866532 233355667788999999434456666655
Q ss_pred --EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEe
Q 010206 308 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 308 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~ 381 (515)
|.+||+.++... . +..+........|+|||+.|+..++ + .|+++|+. +.....+.
T Consensus 270 ~~Iy~~d~~~~~~~-----~------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~--g~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTTT-----R------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD--GSNPRRIS 330 (435)
T ss_pred ceEEEEECCCCceE-----E------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC--CCCeEEee
Confidence 677788766431 1 1222244567899999998887553 3 67777765 33344443
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... +....|+|||++|+..+.+ ..|.+||+..+... .+.. ...+....|+|+|+.|+
T Consensus 331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence 22211 1267899999999876543 36888888654322 2221 22466789999999887
Q ss_pred eecC
Q 010206 459 LGSL 462 (515)
Q Consensus 459 s~~~ 462 (515)
..+.
T Consensus 393 ~~~~ 396 (435)
T PRK05137 393 FFRQ 396 (435)
T ss_pred EEEc
Confidence 6554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-11 Score=107.68 Aligned_cols=312 Identities=11% Similarity=0.127 Sum_probs=179.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+.+..++|++|+++|.+. +..++|++....... . .... ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---l-------------------t~~~---------------~~ 75 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---L-------------------CVEL---------------KK 75 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---E-------------------Eecc---------------ce
Confidence 45578899999999999875 558999998776421 1 1011 12
Q ss_pred eEEEEEeecCCCcEEEee-----e-----CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 115 INKIRWCQSANSALYLLS-----T-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~-----~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
+.++.|+| -+.+|.+- . ..-.+++|+++++.......... +.+ + .+.|++|..
T Consensus 76 ~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~------Q~~--W-------~~qfs~dEs 138 (566)
T KOG2315|consen 76 TYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM------QNG--W-------VPQFSIDES 138 (566)
T ss_pred eeeeeecc--cccccccccccccccCCCCCCCceeeeeeccceehhheehhh------hcC--c-------ccccccchh
Confidence 55555533 23344331 1 13457799998854332222111 011 1 456666665
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe---C---CCc
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA---D---DLR 256 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~---~---d~~ 256 (515)
. +.--..+.+.+|+ ..+..+ ....-|...|..+.++|. ...+++= . -..
T Consensus 139 l-------------~arlv~nev~f~~--~~~f~~--------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 139 L-------------AARLVSNEVQFYD--LGSFKT--------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred h-------------hhhhhcceEEEEe--cCCccc--------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 4 3334556788887 333111 111346688999999886 3345441 2 357
Q ss_pred EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--C---------CeEEEEecCcccccccccce
Q 010206 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K---------GSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~ 325 (515)
|+||........ ..+.. .++ ....=..+.|++-|..+|+..+. | .++++.++..... .
T Consensus 196 vri~~~~~~~~~-~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~ 264 (566)
T KOG2315|consen 196 VRIYKYPEEGQH-QPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------S 264 (566)
T ss_pred EEEecccccccc-chhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------E
Confidence 999987632211 11100 011 12223467788776445554443 2 2466666652211 1
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEEE-c-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
+... ..++|.++.|+|+++.+++. + - ..+.|||++ +.++..+... ..+
T Consensus 265 V~L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~eg--pRN-------------- 315 (566)
T KOG2315|consen 265 VPLL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPEG--PRN-------------- 315 (566)
T ss_pred EecC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCCC--Ccc--------------
Confidence 1111 13799999999999888874 3 3 899999998 6776666432 222
Q ss_pred eeEEEcCCCCEEEEecC---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 403 FECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+-|+|.|++|+.++- -|.+-|||+.+. +++..++.... +-..|+|||++++++...=.+|+
T Consensus 316 -~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 316 -TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred -ceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence 7899999999987764 478999999985 34334433222 34566666666666654444444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=114.45 Aligned_cols=325 Identities=11% Similarity=0.056 Sum_probs=177.5
Q ss_pred cEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+++++ -..++.|.+.|..+.+........... ...+.++|||+++ ++.+.+|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------------h~~~~~s~Dgr~~------------yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------------HAGLKFSPDGRYL------------YVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------------EEEEE-TT-SSEE------------EEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------------eeEEEecCCCCEE------------EEEcCCC
Confidence 35544 467899999999998877665543211 0156789999998 7778899
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.+.++| +...+. .... .-.....++++++||++++++ ..+.+.++|.++.+....+- ..........
T Consensus 59 ~vsviD--~~~~~~------v~~i--~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~-~~~~~~~~~~ 127 (369)
T PF02239_consen 59 TVSVID--LATGKV------VATI--KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP-TGGMPVDGPE 127 (369)
T ss_dssp EEEEEE--TTSSSE------EEEE--E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---EE-TTTS-
T ss_pred eEEEEE--CCcccE------EEEE--ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc-cccccccccC
Confidence 999999 444332 2221 122456789999999999987 69999999998876554331 1000111134
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~ 362 (515)
..+..+..+|..+.+++.--..+.|.+-|....+... ...++. ........|+|++++++.+. .
T Consensus 128 ~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~-------------g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 128 SRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKV-------------GRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp --EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSSEEEEEEGG
T ss_pred CCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeecc-------------cccccccccCcccceeeecccc
Confidence 5678888888873344444445888888876643211 111111 13466789999999988753 3
Q ss_pred -CeEEEEEeeCCCCCeeeEeeecc-ccccccccccCCCccceeeEEE--cCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
+.|-++|..+ ++.+..+..... .......+.+... ...| ...+...++.-....+.+||..+. +....+
T Consensus 193 sn~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~-----g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I 265 (369)
T PF02239_consen 193 SNKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGF-----GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTI 265 (369)
T ss_dssp GTEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTT-----EEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEE
T ss_pred cceeEEEeecc-ceEEEEeeccccccccccccccCCCc-----ceEEeeccccceecccccCCccccchhhcC-eEEEEE
Confidence 8999999885 544444322111 0111111111110 1122 223333333323345667888876 455677
Q ss_pred ccCCCceeeEEECCCCCeeEee----cCCCeEEEecCCCCCccccCCcc-ccccCCeeEEEEcCCCCEEEEEc--CC-cE
Q 010206 439 EASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACAA--SN-SL 510 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~----~~d~~v~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~la~~~--~~-~~ 510 (515)
+....+ --+..+|+++++... ...++|.+++...+. ..... ......+.++.|++||+.+.++. .+ .+
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 776666 677889999999887 445788886555442 11111 11223599999999999877654 44 68
Q ss_pred EEEeC
Q 010206 511 YMYYA 515 (515)
Q Consensus 511 ~i~~~ 515 (515)
.+|++
T Consensus 342 ~v~D~ 346 (369)
T PF02239_consen 342 VVYDA 346 (369)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88864
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=116.75 Aligned_cols=237 Identities=16% Similarity=0.150 Sum_probs=147.0
Q ss_pred eEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE-----ecCCCcEEEEEecCCeEEEE
Q 010206 237 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----~p~~~~~l~~~~~dg~i~~w 311 (515)
+.....+-.|..|+..-...+++|+.+.......-++. ..+.+ ....|=+| .|.+ --++.|-.-|.+.+.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hcccC--CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 44555556778888776667889988743322211111 01111 11222233 3455 556778888999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--CEEEEEcCCeEEEEEeeCCC----------CCeee
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDS----------GPVAT 379 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~~~~i~iwd~~~~~----------~~~~~ 379 (515)
|....+. .+.|...... ....++++.|-|.+ .+|++-..|.+++||..... +.-..
T Consensus 201 dp~~~~~----sklfne~r~i--------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEV----SKLFNEERLI--------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHH----HHhhhhcccc--------cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 8876322 1222221110 12579999999844 34444345899999864210 00011
Q ss_pred Eeeec-----cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 380 FQVHE-----HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 380 ~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
+..+. ...+..+...... .|...+|+|||++||+.+.||.+||||..+. .++..++.......+++|+|||
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence 11111 1011111111122 3458999999999999999999999999875 5556777778888999999999
Q ss_pred CeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 455 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 455 ~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+++++|++|.-|.+ |......+...-.+|+..|..++|.|
T Consensus 345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999 33333234445567999999999995
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-10 Score=96.95 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=138.5
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCc----------eEEEEEecCCCcEEEEEec-
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV----------ITSAEFHPTHCNMLAYSSS- 304 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------i~~i~~~p~~~~~l~~~~~- 304 (515)
..+++++++++++++ ..|.|.++-++....+...+ .+..|.+. +....+.|++ ++|++.+-
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-----~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG 165 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVV-----QVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLG 165 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccce-----eeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecC
Confidence 778999999999998 68999999997654443332 12223333 7899999999 77776654
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEee
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~ 382 (515)
-..|.+|++..+.+.......+. . ...-+-|.|+|++++.....+ ++|.+|........+..++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~--~-----------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVK--P-----------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CceEEEEEcccCccccccccccC--C-----------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 45799999998776443222221 1 145678999999999998765 99999999864455555554
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCccee---eeccCCCceeeEEECCCCCeeE
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAEST---TLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
+...... +..+. ..-.+.+++||++|.++. ....|-+|.+...+..+. ....+....+...+.+++++|+
T Consensus 233 i~tlP~d----F~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 233 IDTLPED----FTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred eccCccc----cCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 4332211 11111 123788999999998765 344788888865533322 2223444467889999999998
Q ss_pred eecCCC-eEEE
Q 010206 459 LGSLSG-VVRR 468 (515)
Q Consensus 459 s~~~d~-~v~l 468 (515)
.+..++ .+.+
T Consensus 307 aa~q~sd~i~v 317 (346)
T COG2706 307 AANQKSDNITV 317 (346)
T ss_pred EEccCCCcEEE
Confidence 887764 4554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-12 Score=120.12 Aligned_cols=168 Identities=13% Similarity=0.171 Sum_probs=100.5
Q ss_pred EEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCe--EEE
Q 010206 238 NSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRL 310 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~--i~~ 310 (515)
.+..|+|||+.|+.. .+ ..|++||+.+++.. .+..+.......+|+||+ +.|+..+ .+|. |.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 356889999877643 33 36999999865422 233344455678999999 6666555 4454 555
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+|+.+++.. .+. + +.......+|+|||++|+..+ + ..|.+||+.. ++.. .+. +...
T Consensus 321 ~dl~~g~~~-----~lt----------~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt-~~~~ 380 (433)
T PRK04922 321 VAASGGSAE-----RLT----------F--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLT-PGSL 380 (433)
T ss_pred EECCCCCeE-----Eee----------c--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECC-CCCC
Confidence 566554321 110 0 012244689999999998743 2 3689999874 4332 332 1111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+.+ +.|+++++..+ ....+..+...+...+|+|
T Consensus 381 ---------------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 ---------------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 1257899999988766543 35777777533 3344444444555555654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=117.73 Aligned_cols=172 Identities=12% Similarity=0.179 Sum_probs=98.4
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEec
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~ 313 (515)
+.+..|+|||+.|+. . .++...+|.++....... .+..+........|+||| +.|+..+ .++...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence 346789999988875 3 577666665432211111 233344455678899999 6665444 4566677765
Q ss_pred C--cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC----CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 314 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 314 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
. ++.. ..+. +.+ .......|||||++|+..+. ..|.+||+.. ++. ..+.... .
T Consensus 314 ~~~~g~~-----~~lt----------~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~- 372 (427)
T PRK02889 314 PASGGAA-----QRVT----------FTG--SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-R- 372 (427)
T ss_pred ECCCCce-----EEEe----------cCC--CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-C-
Confidence 3 3221 0000 000 12345789999999987542 2699999875 432 2332111 1
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.....|+|||++|+..+.++ .+++.++. + .....+..+...+...+|+|-
T Consensus 373 --------------~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 373 --------------DESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --------------ccCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence 12679999999988776443 34455553 2 333445445555555666653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.4e-11 Score=113.99 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=92.8
Q ss_pred CeEEEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CC--eE
Q 010206 236 HINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i 308 (515)
.+...+|+|||+.|+.. .++ .|.+||+.++... .+..+........|+||+ +.|+..+. +| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 44567899999887643 344 4777788765422 333455556778999999 66665553 33 57
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeec
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.++|+..+... .+ ..+...+....|+|+|+.|+... + ..|.+||+.. .....+.. .
T Consensus 317 y~~d~~g~~~~-----~l------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~-~ 376 (435)
T PRK05137 317 YVMNADGSNPR-----RI------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTS-G 376 (435)
T ss_pred EEEECCCCCeE-----Ee------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccC-C
Confidence 77787654321 11 11113456688999999998743 2 3677788753 22333321 1
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCC------CcEEEEecCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEG 431 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d------g~i~iw~~~~~ 431 (515)
.. +....|+|||++|+..+.+ ..++++|+..+
T Consensus 377 ~~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 377 FL---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CC---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 11 2268999999998765432 25778888654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-12 Score=104.96 Aligned_cols=98 Identities=13% Similarity=0.243 Sum_probs=68.4
Q ss_pred cceeEEEEccCCCEEEE--EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 343 ASISDIKFARNGRHILS--RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s--~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
++|.+++|+|+|+.++. |.. ..|.+||++ .+.+..+.... +..+.|+|+|++|++++.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGF 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEc
Confidence 57999999999998775 333 899999996 56665554222 237999999999998874
Q ss_pred ---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 420 ---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 420 ---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.|.|.+||+++. ..+...+ | ..+..++|+|+|++++++..
T Consensus 121 ~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 467999999955 2222222 2 23456667777776666643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-10 Score=102.64 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=167.2
Q ss_pred EEeeeCC----CeEEEEEc--cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC
Q 010206 129 YLLSTND----KTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (515)
Q Consensus 129 l~~~~~d----~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 202 (515)
+++|+.. +.|..|++ .++++......... ..++.++++|+++.| ++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~--------------~~Ps~l~~~~~~~~L------------Y~~~ 55 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG--------------ENPSWLAVSPDGRRL------------YVVN 55 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES--------------SSECCEEE-TTSSEE------------EEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC--------------CCCceEEEEeCCCEE------------EEEE
Confidence 4555554 68999988 45555444332111 122278899999988 3333
Q ss_pred ----CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc--
Q 010206 203 ----GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV-- 274 (515)
Q Consensus 203 ----~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-- 274 (515)
..+.|..|+ +....+... ..... .........++++|++++|+++ .+|.|.++++............
T Consensus 56 e~~~~~g~v~~~~--i~~~~g~L~--~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 56 EGSGDSGGVSSYR--IDPDTGTLT--LLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp TTSSTTTEEEEEE--EETTTTEEE--EEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred ccccCCCCEEEEE--ECCCcceeE--Eeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence 467888887 333212111 11111 1133456789999999999998 6999999999875433322110
Q ss_pred ----cCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 275 ----KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 275 ----~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.|..........+++.|+|++ +++++.. ....|.+|++............+..+. ...-+.+.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-----------G~GPRh~~ 198 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-----------GSGPRHLA 198 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-----------TSSEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-----------CCCCcEEE
Confidence 011111234557899999999 6555544 456899999976542111111111111 14578899
Q ss_pred EccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEE
Q 010206 350 FARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVF 426 (515)
Q Consensus 350 ~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw 426 (515)
|+|++++++.... +.|.++++......+.....-.... .-+... .....++++|||++|+++. .++.|.+|
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~----~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP----EGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE----TTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc----cccccc--CCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 9999999988654 9999999983222222222111100 000000 0133799999999987654 67789999
Q ss_pred ecCC-CCcce--eeeccCCCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 427 GCSE-GSAES--TTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 427 ~~~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
++.. .+.+. ..+.......+.++++|+|++|+.++. ++.|.+
T Consensus 273 ~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp EECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 9942 22232 333333455789999999999987764 456655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.2e-12 Score=107.81 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=169.6
Q ss_pred ccccccceEEEEECCCCC--eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~--~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
.....+.|+.++|.-|++ .|...+.+-.+..+.+...... +...-........
T Consensus 51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-----------------s~~~~~~~~~l~~-------- 105 (412)
T KOG3881|consen 51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-----------------SSLDDAKTVSLGT-------- 105 (412)
T ss_pred ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccc-----------------ccccccccccccc--------
Confidence 345567888888887664 3443335556666666554432 1100011112222
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+|..++. .+ ..|++|-.+|.+.+|....+..... .+.....|..+..
T Consensus 106 ----~~I~gl~~---~d-g~Litc~~sG~l~~~~~k~~d~hss------------------------~l~~la~g~g~~~ 153 (412)
T KOG3881|consen 106 ----KSIKGLKL---AD-GTLITCVSSGNLQVRHDKSGDLHSS------------------------KLIKLATGPGLYD 153 (412)
T ss_pred ----ccccchhh---cC-CEEEEEecCCcEEEEeccCCccccc------------------------cceeeecCCceee
Confidence 56777766 23 3788889999999999885432100 0001111111111
Q ss_pred -ccccCCCCCCCCCCCc--ccEEeeeeeecccccccccceeeeeec--cCcCCeEEEEecCC--CCEEEEe-CCCcEEEE
Q 010206 189 -NFGCASNDSSFPPGGV--SSLRLPVVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSD--GETFISA-DDLRINLW 260 (515)
Q Consensus 189 -~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iw 260 (515)
-.......++++|+.. ..+++|| +.........++.+.-.. .-.-.++++.|-+. ...|+++ .-+.+++|
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwd--le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWD--LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred eccCCCCCceEecCchhcccceeeee--cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEe
Confidence 1122233455778888 8999999 444333222222111000 11234567888877 8889998 89999999
Q ss_pred eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
|.+.++.+.. .+.-...+++++...|.+ +++++|...+.+..||++.+++.. +.+.+
T Consensus 232 Dt~~qRRPV~-------~fd~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl~g---------------~~~kg 288 (412)
T KOG3881|consen 232 DTRHQRRPVA-------QFDFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKLLG---------------CGLKG 288 (412)
T ss_pred cCcccCccee-------EeccccCcceeeeecCCC-cEEEEecccchhheecccCceeec---------------cccCC
Confidence 9997776654 333357789999999999 999999999999999999987642 22556
Q ss_pred cccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCee
Q 010206 341 IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVA 378 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~ 378 (515)
..+.|+++..+|.++++++++ |..++|+|+.+ .+++.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt-rkll~ 326 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT-RKLLH 326 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc-chhhh
Confidence 668999999999999999977 59999999997 55443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=117.96 Aligned_cols=185 Identities=16% Similarity=0.153 Sum_probs=118.1
Q ss_pred CcCCeEEEEecCCCCEEEEe-C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCC-
Q 010206 233 HDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG- 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg- 306 (515)
+...+.+..|+|+++.|+.. . ...|++||+.+++.. .+..+...+.+++|+|++ +.|+ +.+.++
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~---------~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~ 257 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE---------KVASFPGMNGAPAFSPDG-SKLAVSLSKDGN 257 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------EeecCCCCccceEECCCC-CEEEEEECCCCC
Confidence 33457778899999999876 2 357999999866432 122344556778999999 5554 555444
Q ss_pred -eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEe
Q 010206 307 -SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 307 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~ 381 (515)
.|.+||+.++.... +..+........|+|||+.|+..++ + .|.++|+.. ++ ...+.
T Consensus 258 ~~i~~~d~~~~~~~~-----------------l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQLTR-----------------LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLT 318 (417)
T ss_pred ccEEEEECCCCCEEE-----------------CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEee
Confidence 58888887664211 1111123456789999998876543 3 567777653 32 33333
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
.+... .....|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|+++.|+
T Consensus 319 ~~~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 319 FRGGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred cCCCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECCCCCEEE
Confidence 22211 23689999999999887765 7889998875322 22222 1234568999999888
Q ss_pred eecCCC
Q 010206 459 LGSLSG 464 (515)
Q Consensus 459 s~~~d~ 464 (515)
..+.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-11 Score=99.69 Aligned_cols=235 Identities=13% Similarity=0.152 Sum_probs=150.4
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC------CeEE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIR 309 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~ 309 (515)
...+++|+.|...+++|.|.-.++|+.+--++..+ +......-.+..+-|..+ .+.+.|+.+ ..+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~------r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESAS------RQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhh------hccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEE
Confidence 44569999999999999666689999875332211 011111122333334332 233344443 4799
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
|||=..... +..+. -..+|.++.++++ .|++.-.+.|+||.+..+.+.+..+.....+..
T Consensus 79 IWDD~k~~~----i~el~-------------f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG- 138 (346)
T KOG2111|consen 79 IWDDLKERC----IIELS-------------FNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG- 138 (346)
T ss_pred EEecccCcE----EEEEE-------------eccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCc-
Confidence 999332222 11222 1267999999865 677777789999999865666666655443322
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCc-ceeeeccCCCceeeEEECCCCCeeEeecCCCeE-
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV- 466 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v- 466 (515)
++ +++-+.+..+||.-+ .-|.|+|-|+..... ....+++|.+.|.+++...+|..+|++|..|++
T Consensus 139 lC------------~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 139 LC------------SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred eE------------eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 11 222222344566444 569999999986643 236789999999999999999999999999975
Q ss_pred EEec---CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 467 RRVK---GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 467 ~l~~---~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|+++ |..+. ++.. -.-.+.|.+++|||+..+||++++.| +-||+
T Consensus 207 RIFdt~~g~~l~--E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 207 RIFDTEDGTLLQ--ELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEcCCCcEee--eeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 5532 22222 1110 01246899999999999999999877 66664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-09 Score=93.06 Aligned_cols=288 Identities=13% Similarity=0.191 Sum_probs=174.2
Q ss_pred ccchhhhhcccccccccccccceEEEEECCCCCeEEeecC---CCeEEEEEccc--CcccCccccCcccccccccCCccc
Q 010206 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 16 ~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~---dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
+|++-.--|+........+.+.++-++|+|+++.|.++.. +|.|..|.++. ++..
T Consensus 20 v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-------------------- 79 (346)
T COG2706 20 VFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-------------------- 79 (346)
T ss_pred EEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--------------------
Confidence 4555432344445556778889999999999999998854 47788888764 3321
Q ss_pred eeee--ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccC-CeeEEEeeccCCcccCCCCCC
Q 010206 91 RYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGP 166 (515)
Q Consensus 91 ~~~~--~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~ 166 (515)
++. ...++ +-..++. ++++++++++.. -|.|.++-++. |.+........+
T Consensus 80 -~ln~~~~~g~--------------~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h--------- 133 (346)
T COG2706 80 -FLNRQTLPGS--------------PPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH--------- 133 (346)
T ss_pred -EeeccccCCC--------------CCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec---------
Confidence 111 11222 2366777 677888888854 47888888765 332222111100
Q ss_pred ccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
.+.. ...+ .....+.+..+.|++
T Consensus 134 --------------------------------------------------~g~~--p~~r-----Q~~~h~H~a~~tP~~ 156 (346)
T COG2706 134 --------------------------------------------------TGSG--PHER-----QESPHVHSANFTPDG 156 (346)
T ss_pred --------------------------------------------------CCCC--CCcc-----ccCCccceeeeCCCC
Confidence 0000 0000 112336678899999
Q ss_pred CEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCccccccccc
Q 010206 247 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 247 ~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~ 323 (515)
++|++. .--.|.+|++..++.... .+..+ .-....+-|.|+|++ ++...-+ -+++|.+|.........+.+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999987 456799999985543221 11122 234557899999999 5555544 49999999987741111111
Q ss_pred ceeee-ccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 324 KLFEE-QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
..... ++. +. ......+|.+++||++|.++.. ..|.+|.+...+..+..+...... .. ..
T Consensus 231 Q~i~tlP~d------F~-g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~--------~P- 293 (346)
T COG2706 231 QTIDTLPED------FT-GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQ--------FP- 293 (346)
T ss_pred eeeccCccc------cC-CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-Cc--------CC-
Confidence 11111 000 11 1245788999999999999865 789999988644444433322211 00 00
Q ss_pred ceeeEEEcCCCCEEEEecC-CCcEEEEecCCC
Q 010206 401 DKFECCLSGDGGRVATGSY-SNLFRVFGCSEG 431 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~-dg~i~iw~~~~~ 431 (515)
....|+++|++|+.+.. +..|.+|.+...
T Consensus 294 --R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 294 --RDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred --ccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 16889999999988875 457888877643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-11 Score=108.92 Aligned_cols=290 Identities=12% Similarity=0.150 Sum_probs=176.8
Q ss_pred cccccccceeEEEEEeecCCCcEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
+..++++..-+.|.. ++||+|+++ |...-.|++||+.+-.++......... |. -..++.|-.
T Consensus 45 iQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~--------V~-------feiLsDD~S 107 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV--------VD-------FEILSDDYS 107 (703)
T ss_pred HHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccc--------ee-------EEEeccchh
Confidence 445566688888888 667888766 567789999999987655444333211 10 001111111
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec-CCCCEEEEeCCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISADDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~d~~i~iwd~~ 263 (515)
.+ +.-..|.+|.+-. .-+. .+...-...-.+++++ |...+++.|....|+-++++
T Consensus 108 K~------------v~L~~DR~IefHa-----k~G~-------hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE 163 (703)
T KOG2321|consen 108 KS------------VFLQNDRTIEFHA-----KYGR-------HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE 163 (703)
T ss_pred hh------------eEeecCceeeehh-----hcCe-------eeeeecCcCCccccccCCCccEEEeecCcceEEEEcc
Confidence 11 1122233333211 0000 0000001122345554 34556666677888889998
Q ss_pred CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
.+..+. .+....+.++++..++-. .+|++|+.+|.+..||.+....+.. ++...... .........
T Consensus 164 qGrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~~v~-s~pg~~~~~ 229 (703)
T KOG2321|consen 164 QGRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT----LDAASSVN-SHPGGDAAP 229 (703)
T ss_pred cccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee----eecccccC-CCccccccC
Confidence 776442 344456889999999987 7999999999999999998765432 22211100 000111123
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC--CCEEEEecCC
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~s~d 420 (515)
.|+++.|+.+|-.+++|+. |.+.|||++. .+++.. ..|....+ |..+.|.+. ++.|+|. +.
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk 293 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DK 293 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-ch
Confidence 5999999999999999976 9999999996 555543 33443321 446778664 4455554 45
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++|||-.+|+.. ..++. ...++.+++-|++..++++..+..+..
T Consensus 294 ~~~kiWd~~~Gk~~-asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 294 RILKIWDECTGKPM-ASIEP-TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred HHhhhcccccCCce-eeccc-cCCcCceeeecCCceEEEecCCCccee
Confidence 68999999988443 34433 344889999999999988887765543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-09 Score=99.92 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=156.2
Q ss_pred cccceEEEEECCCCCeEEeecC----CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
-....+.++++|++++|.+... +|.|..|++..... ....+.......
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 3455677899999999988865 57899999876410 001111111111
Q ss_pred cccceeEEEEEeecCCCcEEEeee-CCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..-..+++ ++++++|+++. .+|.|.++++.. +.+............. .........++-.+.++|+|+.+.
T Consensus 87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECCCCCEEE
Confidence 33456777 66777888886 489999999987 5544432211110000 000001112222789999999871
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 265 (515)
++.-....|.+|+ +......... ............+.+.|+|+++++... .+++|.++++...
T Consensus 160 -----------v~dlG~D~v~~~~--~~~~~~~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 160 -----------VPDLGADRVYVYD--IDDDTGKLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp -----------EEETTTTEEEEEE--E-TTS-TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred -----------EEecCCCEEEEEE--EeCCCceEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 2223345788887 4333322211 112123445678899999999988775 5999999998833
Q ss_pred Cccccee---cccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEEecCc--ccccccccceeeeccCCCcccccc
Q 010206 266 NQSFNIV---DVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 266 ~~~~~~~---~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
......+ ...+.... .......|+++||+ ++|++ .-..+.|.+|++.. +.+. .+..+...
T Consensus 225 ~g~~~~~~~~~~~~~~~~-~~~~~~~i~ispdg-~~lyvsnr~~~sI~vf~~d~~~g~l~--~~~~~~~~---------- 290 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFT-GENAPAEIAISPDG-RFLYVSNRGSNSISVFDLDPATGTLT--LVQTVPTG---------- 290 (345)
T ss_dssp TTEEEEEEEEESCETTSC-SSSSEEEEEE-TTS-SEEEEEECTTTEEEEEEECTTTTTEE--EEEEEEES----------
T ss_pred CCceeEEEEeeecccccc-ccCCceeEEEecCC-CEEEEEeccCCEEEEEEEecCCCceE--EEEEEeCC----------
Confidence 2222111 11111111 12367899999999 55554 44578899999943 3321 11122111
Q ss_pred ccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeC
Q 010206 340 EIIASISDIKFARNGRHILSRD-Y-MTLKLWDINM 372 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~ 372 (515)
....+.+.++|+|++|+++. + +.|.+|++..
T Consensus 291 --G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 291 --GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp --SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 12368899999999999875 3 8999999874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-10 Score=102.76 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=97.0
Q ss_pred ccCCceEEEEEecCCCcEEEE--EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 281 DLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...++|...+|.|.+ +.|++ |-.+-.+.++|++..-. +..++ +.=..+.|+|.+++++
T Consensus 272 ~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl~-------~~~Pe------------~~rNT~~fsp~~r~il 331 (561)
T COG5354 272 DLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNLR-------FYFPE------------QKRNTIFFSPHERYIL 331 (561)
T ss_pred cccccceeeeecccC-CceeEEecccccceeecccccceE-------EecCC------------cccccccccCcccEEE
Confidence 457899999999987 55443 45688899999987521 11111 3345678999999998
Q ss_pred EEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec------CCCcEEEEec
Q 010206 359 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS------YSNLFRVFGC 428 (515)
Q Consensus 359 s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s------~dg~i~iw~~ 428 (515)
.++ . |.+.+||..........+.+.... -+.|+||++++.+.. .|+.+.|||+
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s-----------------~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS-----------------YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCCce-----------------EeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 843 2 999999987422333344443322 578999999987654 4789999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
... .. ...+.+.|.|.+++..+.|.+..-.+
T Consensus 395 ~g~-~~--------fel~~~~W~p~~~~~ttsSs~~~h~~ 425 (561)
T COG5354 395 YGA-KV--------FELTNITWDPSGQYVTTSSSCPKHKV 425 (561)
T ss_pred cCc-hh--------hhhhhccccCCcccceeeccCCCCcc
Confidence 743 12 14557788888888877777764443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=103.23 Aligned_cols=222 Identities=16% Similarity=0.179 Sum_probs=133.1
Q ss_pred CCeEEEEecCCCC---EEEEeCCCcEEEEeCCCCCcccc-----------------e---------ecccCcc--ccccC
Q 010206 235 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSFN-----------------I---------VDVKPAN--MEDLT 283 (515)
Q Consensus 235 ~~v~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~~-----------------~---------~~~~~~~--~~~~~ 283 (515)
..|+.+.|.++++ +|+++.|.+|++|.+........ + +...|+. -.+|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4566777776543 34445888888888764332210 0 0011111 13577
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEE-EEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHIL-SRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-s~~ 361 (515)
--|.+|.++.|. ..+++ ..|=.|.+|++.-.... ....+... .-+...+.-|++..|+|.. ..++ +.+
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 778999999997 56554 56778999998643221 11122111 1133344678999999943 3444 445
Q ss_pred CCeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 362 YMTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 362 ~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
.|+|++.|++...-+. +.+....... ..-.-..-|..|..+.|+++|+|+++-+. -+|++||++.....+.+.
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~ 310 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY 310 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE
Confidence 5999999998421111 1111111111 00111122335668999999999998655 589999996655555565
Q ss_pred ccCCC---------------ceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 439 EASKN---------------PMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 439 ~~~~~---------------~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+.|.. .--.++|+.++.++++|+....++++.
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 55532 123568889999999999999999943
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-11 Score=106.38 Aligned_cols=314 Identities=11% Similarity=0.092 Sum_probs=185.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
=+-+.|||-|.||+|--.-| |.+|--.+-. ....|. | ..|.-
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-----------------------r~~RF~-H-------------p~Vq~ 254 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD-----------------------RIQRFY-H-------------PGVQF 254 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH-----------------------HHHhcc-C-------------CCcee
Confidence 36789999999999988777 8899733221 112222 2 34888
Q ss_pred EEEeecCCCcEEEeeeC-----------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 118 IRWCQSANSALYLLSTN-----------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
+.|+| +.++|++-+. ...++|||+.+|.++..+... ..+...+.-..||.|++++
T Consensus 255 idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~------------~~~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 255 IDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI------------KSPYLKWPIFRWSHDDKYF 320 (698)
T ss_pred eecCC--ccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc------------CCCccccceEEeccCCcee
Confidence 88854 4558888542 257999999999877655432 1222344467899999987
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C----CCcEEEE
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D----DLRINLW 260 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~----d~~i~iw 260 (515)
.+ - ...+|.||+ ...... ...+ .-....|..+.|+|.+++||.= . -..+.+.
T Consensus 321 Ar------------m-~~~sisIyE--tpsf~l-ld~K------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 321 AR------------M-TGNSISIYE--TPSFML-LDKK------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred EE------------e-ccceEEEEe--cCceee-eccc------ccCCccccCcccCCCcceEEEEcccccCCcceEEEE
Confidence 33 1 225677776 211110 0011 1123678889999999888852 1 2344555
Q ss_pred eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEE----------ecCCeEEEEecCcccccccccceeeecc
Q 010206 261 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----------SSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 261 d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.+.+.+.... ..-+.-.-..+-|..+| .+|..- +.-..+.|+.++...... ...+
T Consensus 379 evPs~~~iRt--------~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv---e~ve--- 443 (698)
T KOG2314|consen 379 EVPSKREIRT--------KNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV---EVVE--- 443 (698)
T ss_pred ecCccceeee--------ccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCc---eeee---
Confidence 5544332211 11122222344455555 444421 111234455554433211 1111
Q ss_pred CCCccccccccccceeEEEEccCCCEEEE--EcC--CeEEEEEeeCCCC---CeeeEeeeccccccccccccCCCcccee
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILS--RDY--MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s--~~~--~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
....|...+|-|.|..+++ |.. .++.+|.+.+... .+..+.... .+
T Consensus 444 ----------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-----------------~N 496 (698)
T KOG2314|consen 444 ----------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-----------------AN 496 (698)
T ss_pred ----------cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-----------------cc
Confidence 2357899999999988776 444 7899998873221 222222211 23
Q ss_pred eEEEcCCCCEEEEe---cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 404 ECCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 404 ~~~~s~~~~~l~s~---s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+.|+|.|++++.+ |..|.+.++|+............| ...+.+.|.|.|+|+.+++.....++
T Consensus 497 ~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 497 TVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred eEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 79999999998865 457899999987532222222223 34568899999999999988776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=107.41 Aligned_cols=303 Identities=11% Similarity=0.144 Sum_probs=196.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
++......|++|+....++|.|+.||.++|-.+.+.....+.. .++--.....-.++.||.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--------glaa~snLsmNQtLeGH~----------- 71 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--------GLAAASNLSMNQTLEGHN----------- 71 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc--------ccccccccchhhhhccCc-----------
Confidence 4566778999999999999999999999999987665321111 111222334446788998
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+.|..+.| ..+.+.|-++..+|.|.+|-+..+....
T Consensus 72 -~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~E----------------------------------------- 107 (1189)
T KOG2041|consen 72 -ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWCE----------------------------------------- 107 (1189)
T ss_pred -ceEEEEEe--ccccccccccCCCceEEEEeeecccHHH-----------------------------------------
Confidence 89999999 5666788888999999999987764211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+.. -....+-|.+++|+.||..++.. .||.|.+=.++..+ ...
T Consensus 108 --------------------------EMi---------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg 151 (1189)
T KOG2041|consen 108 --------------------------EMI---------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG 151 (1189)
T ss_pred --------------------------HHh---------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc
Confidence 000 01233668899999999999998 89999887776332 211
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc-ceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS-KLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..++ ......+.|++|. ..++.+-.+|.+.+||....-...-.. ........ +......|..+.
T Consensus 152 ------KeLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~------~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 152 ------KELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI------FSNFPTKIAEIE 216 (1189)
T ss_pred ------hhcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee------ecCCCcccccee
Confidence 0111 1223478899998 788888889999999976432211000 00111000 000011244444
Q ss_pred Ec--------cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 350 FA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 350 ~s--------~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
|. ||...|+.+-+ |.+.|..-.+...++-.-.+. .+....|+++|..|+.++.+
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm-----------------~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM-----------------KIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc-----------------EeecceecCCCcEEEEccCc
Confidence 42 47778888765 887776655433333222211 14478999999999988764
Q ss_pred ---------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 421 ---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 421 ---------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.|.+|..- +....+++.....|+.+.|-..|-.+|.+ .|+.+.+
T Consensus 280 ~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 367777654 45667888888899999997666555444 4666655
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.5e-11 Score=116.00 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=120.7
Q ss_pred ecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc
Q 010206 242 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 242 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
++++.-++++| .-+.|.+|+....+.. ..+.+|.+.|.++.++.|| +++++.+.|+++|+|++.+.+...
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~ 211 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG 211 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC
Confidence 46677778888 7899999999833322 2578999999999999999 999999999999999999876432
Q ss_pred cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCc
Q 010206 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 399 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.+.-+|+..+..+.|.|. .+++++ |.+.++|+.. +..+..+..|...
T Consensus 212 ---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~------------- 259 (967)
T KOG0974|consen 212 ---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK------------- 259 (967)
T ss_pred ---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-------------
Confidence 235678999999999988 777765 5999999776 6666677777643
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.++.++..++.-.++|++.|+.+++|++...
T Consensus 260 -~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 260 -GIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred -ceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2568999999999999999999999998754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-10 Score=105.78 Aligned_cols=167 Identities=14% Similarity=0.223 Sum_probs=94.4
Q ss_pred EEEecCCCCEEEEe--CCCc--EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010206 239 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 311 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~~w 311 (515)
...|+||++.|+.. .++. |+++|+.+++.. .+..+.......+|+||+ +.|+..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 46789999988753 4554 777788755422 223344456778999999 5555444 344 45556
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-C--eEEEEEeeCCCCCeeeEeeecccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~--~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
|+.+++... + ++.. .......|+|||++|+..+ . + .|.++|+.. ++ ...+.... .
T Consensus 336 dl~~g~~~~--L-t~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~- 394 (448)
T PRK04792 336 NLASGKVSR--L-TFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-L- 394 (448)
T ss_pred ECCCCCEEE--E-ecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-C-
Confidence 766554210 0 0111 1223468999999988743 2 4 455566653 32 23332111 1
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+. ++ .+++++.. + .....+..+...+...+|+|
T Consensus 395 --------------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G-~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 395 --------------DESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G-RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --------------CCCceECCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCCCcCCCccCC
Confidence 014589999998876553 33 36677764 3 33344544444555666665
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=110.09 Aligned_cols=214 Identities=13% Similarity=0.159 Sum_probs=123.3
Q ss_pred cCcCCeEEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecCC
Q 010206 232 AHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg 306 (515)
.+...+.+..|+|||+.|+.. .+ ..|.+||+.+++.. . +....+.....+|+||| +.|+ +.+.++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~--------lt~~~g~~~~~~wSPDG-~~La~~~~~~g 284 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-K--------VTSFPGINGAPRFSPDG-KKLALVLSKDG 284 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-E--------ecCCCCCcCCeeECCCC-CEEEEEEeCCC
Confidence 445678889999999998875 33 35888898765432 1 11112233467999999 5554 556666
Q ss_pred e--EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeE
Q 010206 307 S--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATF 380 (515)
Q Consensus 307 ~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~ 380 (515)
. |.++|+.+++.. . +..+........|+|||+.|+..++ + .|.++|+.. ++ ...+
T Consensus 285 ~~~Iy~~dl~tg~~~-----~------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~L 345 (448)
T PRK04792 285 QPEIYVVDIATKALT-----R------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRL 345 (448)
T ss_pred CeEEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEE
Confidence 5 777787765431 1 1112234567899999998876442 4 455556553 32 3333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCee
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
...... ....+|+|||++|+..+. ++ .|.++|+.++... .+.... ......|+|+++.|
T Consensus 346 t~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I 407 (448)
T PRK04792 346 TFEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMV 407 (448)
T ss_pred ecCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEE
Confidence 211111 125789999999876554 34 4555777766322 222221 12245799999987
Q ss_pred EeecCC-Ce--EEE--ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 458 PLGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 458 ~s~~~d-~~--v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
+..+.+ +. +.+ .++.... ......+.+...+|+|-
T Consensus 408 ~~~~~~~g~~~l~~~~~~G~~~~------~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 408 IYSTTYQGKQVLAAVSIDGRFKA------RLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEecCCceEEEEEECCCCceE------ECcCCCCCcCCCccCCC
Confidence 766543 33 333 2222211 11123456778888873
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-10 Score=107.97 Aligned_cols=215 Identities=15% Similarity=0.140 Sum_probs=128.0
Q ss_pred ccCcCCeEEEEecCCCCEEEEe--CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
..+...+....|+|||+.|+.. .+ ..|.+||+.+++.. .+....+.+...+|+||| +.|+ +...+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------~l~~~~g~~~~~~~SpDG-~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------QITNFEGLNGAPAWSPDG-SKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---------EccCCCCCcCCeEECCCC-CEEEEEEccC
Confidence 3455678899999999998764 33 46889999866432 112223345578999999 5555 55555
Q ss_pred C--eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeee
Q 010206 306 G--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 379 (515)
Q Consensus 306 g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~ 379 (515)
+ .|.+||+.++... . +..+........|+|||+.|+..++ + .|+++|+.. ++ ...
T Consensus 265 g~~~Iy~~d~~~~~~~-----~------------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-----R------------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred CCceEEEEECCCCCeE-----E------------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5 5888898876531 1 1112234556789999998876543 3 566667653 33 333
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
+...... .....|+|||++|+..+. ++ .|.+||+.++.... +.. ........|+|+|+.
T Consensus 326 lt~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 326 VTFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred eecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccC-CCCCCCceECCCCCE
Confidence 3211110 115789999999886654 33 58889998764332 221 112235689999999
Q ss_pred eEeecCC-CeEEE----ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 457 RPLGSLS-GVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 457 l~s~~~d-~~v~l----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
++..+.+ +.-++ .++.... .+ ....+.+...+|+|-
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~--~l----~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRL--PL----PTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceE--EC----cCCCCCcCCCccCCC
Confidence 8776654 33333 2222111 11 113456777888874
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-08 Score=98.26 Aligned_cols=354 Identities=12% Similarity=0.139 Sum_probs=191.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEE----EcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLF----ERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+.|.++.|-++...++.+..+|.|.+. +..+.... ....
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------~VG~-------------- 118 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------------------IVGS-------------- 118 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------------------EEEE--------------
Confidence 44789999999999999999999999998 33322210 1111
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccC-------------CeeEE--------EeeccCCcccC-------
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE-------------KKVKK--------VFDWNVHPEKA------- 161 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~-------------~~~~~--------~~~~~~~~~~~------- 161 (515)
++..|.+++|+ ||++.|+.++.++++.+..-.= +..+. ..+++....+.
T Consensus 119 -vd~GI~a~~WS--PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 119 -VDSGILAASWS--PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred -EcCcEEEEEEC--CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 12679999994 5677999999899888764221 00000 01111111110
Q ss_pred -----CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCC
Q 010206 162 -----AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYH 236 (515)
Q Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
...+.+. .......+.|..||+++.+..... ..+....+++|+ .++...... ..-.+-
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~------~~~~~R~iRVy~-----ReG~L~stS-----E~v~gL 258 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP------ETGSRRVIRVYS-----REGELQSTS-----EPVDGL 258 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc------CCCceeEEEEEC-----CCceEEecc-----ccCCCc
Confidence 0011111 122333778899999874332210 011346788887 443221111 111222
Q ss_pred eEEEEecCCCCEEEEe-C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 237 INSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
-.+++|.|.|++||+. . ...|.+|.-+ + ....-+.+ .+......|..+.|++++ .+||.-..|. |.+|-
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-G-LrhgeF~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERN-G-LRHGEFTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWT 331 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecC-C-cEeeeEec---CCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEE
Confidence 3478999999999987 2 4566666654 2 22211111 112346678999999998 8888877655 99999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEee----CCC-------CCeee
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDIN----MDS-------GPVAT 379 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~----~~~-------~~~~~ 379 (515)
..+-.-..+..-.+... ..+..+.|+|. ...|..... +.+..+++. ... ..+..
T Consensus 332 ~~NYHWYLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaV 398 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAV 398 (928)
T ss_pred eeCCEEEEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEE
Confidence 87754332211111111 23444788873 334444433 555544432 100 01111
Q ss_pred Eeeec---------cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-------eeeec----
Q 010206 380 FQVHE---------HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTLE---- 439 (515)
Q Consensus 380 ~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-------~~~~~---- 439 (515)
+.+.. ...+.++ .+.-..-..|.+++|++++..+++-..||.|.+|........ ...+.
T Consensus 399 IDG~~lllTpf~~a~VPPPMs-~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 399 IDGNKLLLTPFRRAVVPPPMS-SYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred EeCCeEEEecccccCCCchHh-ceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 11111 0011110 111111224668999999988999999999999986543211 01111
Q ss_pred ------cCCCceeeEEECCCCCeeEeecCC
Q 010206 440 ------ASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 440 ------~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.....+..++|..+...++..+.+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 478 DISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cccccccccccEEEEEEeCCCEEEEEEecC
Confidence 123446777887777766555554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=103.56 Aligned_cols=168 Identities=12% Similarity=0.155 Sum_probs=96.2
Q ss_pred EEEEecCCCCEEEEe--CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC--eEEE
Q 010206 238 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRL 310 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg--~i~~ 310 (515)
....|+|||+.|+.. .++ .|++||+.++... .+..+........|+||+ +.|+..+ .++ .|.+
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEE
Confidence 357789999888753 343 6888898865422 223344455678899999 5555444 344 4666
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC----CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~----~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+|+.+++... + .+.. .......|+|+|+.|+.... ..|.+||+.+ ++ ...+.. ...
T Consensus 316 ~d~~~g~~~~--l-t~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~-~~~ 375 (430)
T PRK00178 316 VNVNGGRAER--V-TFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTD-TSL 375 (430)
T ss_pred EECCCCCEEE--e-ecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccC-CCC
Confidence 7776654210 0 0110 12335689999999987532 3578888875 33 233321 111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCC-C--cEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
.....|+|||++|+..+.+ | .|+++++..+ ....+..+...+....|+|
T Consensus 376 ---------------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 ---------------DESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---------------CCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence 0156899999998866543 3 4666676532 2233443444445555554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-10 Score=106.27 Aligned_cols=203 Identities=13% Similarity=0.108 Sum_probs=125.2
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeecc
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
...|.++|...... . .+..+...+.+.+|+|++ +.|+....+ ..|.+||+.+++...
T Consensus 169 ~~~l~~~d~~g~~~-~--------~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~---------- 228 (417)
T TIGR02800 169 RYELQVADYDGANP-Q--------TITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK---------- 228 (417)
T ss_pred cceEEEEcCCCCCC-E--------EeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE----------
Confidence 34577777753322 1 333456678899999999 777776654 479999998764311
Q ss_pred CCCccccccccccceeEEEEccCCCEEEE-EcC---CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILS-RDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
+..+...+.++.|+|||+.|+. .+. ..|++||+.+ + ....+..+... .....
T Consensus 229 -------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~---------------~~~~~ 284 (417)
T TIGR02800 229 -------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-K-QLTRLTNGPGI---------------DTEPS 284 (417)
T ss_pred -------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC-C-CEEECCCCCCC---------------CCCEE
Confidence 1112234567899999997765 332 4688888874 3 33333322211 12578
Q ss_pred EcCCCCEEEEecC-CC--cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC---eEEEecCCCCCccccC
Q 010206 407 LSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG---VVRRVKGADNSALDAN 480 (515)
Q Consensus 407 ~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~v~l~~~~~~~~~~~~ 480 (515)
|+|||+.|+..+. ++ .|+++++.+++. ..+..+........++|++++++..+.++ .|.+++-.....
T Consensus 285 ~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---- 358 (417)
T TIGR02800 285 WSPDGKSIAFTSDRGGSPQIYMMDADGGEV--RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---- 358 (417)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----
Confidence 9999998876554 33 577888876532 34444455667889999999998887765 444432211110
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..+.........+|+||+++|+.++.
T Consensus 359 -~~l~~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 359 -RVLTDTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred -EEccCCCCCCCceECCCCCEEEEEEe
Confidence 11111223456789999999987654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-09 Score=91.14 Aligned_cols=210 Identities=16% Similarity=0.120 Sum_probs=131.0
Q ss_pred ceeEEEEEeecCCCc--EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..+..+.|+..+.+. .++-+-.+|.|.++..........+..-. .-.+.. ..+.++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------~~ki~~--~~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------SKKISV--VEALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc-------hhhhhh--eeeeEEEeeccCceE----
Confidence 557788887544332 35556778999999876544322221110 000000 011256677777776
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++...+|.+.+-+ . .+... +.. ...+.|..++....|+.. .+++.+| +|+.+..||++.++..
T Consensus 137 --------~vs~s~G~~~~v~--~--t~~~l--e~v-q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY--E--TEMVL--EKV-QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred --------EEEcCCCcEEEEe--c--ceeee--eec-ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 7777778777433 1 11110 111 124789999999999764 4566677 8999999999955432
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.- ...+-|...|.+|.-+|..+..+++|+.|-.|++||.|+-.... ++ ....+.|..+
T Consensus 202 i~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl-----~~-----------~~v~GGVWRi 259 (339)
T KOG0280|consen 202 IW------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL-----FK-----------AKVGGGVWRI 259 (339)
T ss_pred ee------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc-----cc-----------CccccceEEE
Confidence 11 12345888999999998767899999999999999999643211 11 1122689999
Q ss_pred EEccC--CCEEEEEcCCeEEEEEeeC
Q 010206 349 KFARN--GRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 349 ~~s~~--~~~l~s~~~~~i~iwd~~~ 372 (515)
..+|. +++|+++-.+-.+|-+...
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecc
Confidence 99983 4455555445567777664
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=101.46 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=122.2
Q ss_pred CcCCeEEEEecCCCCE--E-EEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-C
Q 010206 233 HDYHINSISNNSDGET--F-ISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~--l-~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-d 305 (515)
......+-.|+|||+. + .++ . ...|.+.++..++.. .+....+.....+|+||| +.|+..+. +
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---------~lt~~~g~~~~p~wSPDG-~~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---------KILALQGNQLMPTFSPRK-KLLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------EeecCCCCccceEECCCC-CEEEEEECCC
Confidence 3345567799999875 3 234 3 346777788765432 222234445568999999 66665442 2
Q ss_pred C----eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeC--CCCCe
Q 010206 306 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINM--DSGPV 377 (515)
Q Consensus 306 g----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~--~~~~~ 377 (515)
| .+.+|++..+... . ...+ ..+.........|+|||+.|+..++ +...+|.+.. .+...
T Consensus 253 g~~di~~~~~~~~~g~~g-~-~~~l-----------t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG-K-PRRL-----------LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCC-c-ceEe-----------ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 3 3444666543110 0 0000 1111123456799999998887543 5555555432 12223
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
..+...... +....|||||+.|+..+.+ ..|++||+.+++.. .+......+....|+|++
T Consensus 320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence 333222111 2368999999998866543 46899999877433 333223355678999999
Q ss_pred CeeEeec-CC--CeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 455 PSRPLGS-LS--GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 455 ~~l~s~~-~d--~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.|+... .. ..+.+ +++.+.. ......+.+...+|+|-.
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~------~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTR------KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE------EeecCCCcccCceecCCC
Confidence 9876443 33 33444 2222221 111123456788888754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-09 Score=98.26 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=131.8
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE------ec-------------CCCcEEEEEe
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HP-------------THCNMLAYSS 303 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p-------------~~~~~l~~~~ 303 (515)
|...++|.. .||.+++||....+....+... .. ..+.-++..| +| .+...++-|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--AS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc--hh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 456678887 8999999999877654433211 01 1222233333 22 1125788899
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
..|.|.+|++..+++..+ +. -..|.+.|.++.++.+-..|.+++. +.+..|+... .+.+..+..
T Consensus 78 ~~g~v~~ys~~~g~it~~----~s----------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~ 142 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAK----LS----------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE 142 (541)
T ss_pred CCccEEEEEecCCeEEEE----Ee----------cCCCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc
Confidence 999999999988875322 11 1347789999999998889999765 9999999985 777777766
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-----CCee
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-----RPSR 457 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l 457 (515)
....+ .+++.+|||..|++++ +.|++||++++ +.+.++.+|.++|+.+.|.-+ |.++
T Consensus 143 ~~~~~---------------~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 143 QKPLV---------------SSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred CCCcc---------------ceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcceEEEEEEEecccccccee
Confidence 55442 3899999999999887 58999999987 677899999999999999766 6666
Q ss_pred Eeec
Q 010206 458 PLGS 461 (515)
Q Consensus 458 ~s~~ 461 (515)
+++.
T Consensus 205 Lssa 208 (541)
T KOG4547|consen 205 LSSA 208 (541)
T ss_pred eecc
Confidence 5543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=98.25 Aligned_cols=207 Identities=12% Similarity=0.161 Sum_probs=145.0
Q ss_pred CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 125 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
...+++....||.+++|+...+++...+... +..+..
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-------------------------------------------~~~s~t 40 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-------------------------------------------ASLSGT 40 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc-------------------------------------------hhccCc
Confidence 3468999999999999999998765543322 333444
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe----cCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN----NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
++-..|.+ ..... .....++.+ +-+...++-| ..|.|.+|++..++....+ .-
T Consensus 41 ~~~~~w~L--~~~~s--------------~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~------st 98 (541)
T KOG4547|consen 41 CTYTKWGL--SADYS--------------PMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKL------ST 98 (541)
T ss_pred ceeEEEEE--Eeccc--------------hHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEE------ec
Confidence 44455552 11111 111112111 2244456667 7999999999877654432 33
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
..|.+.|.++.++.+- ..|.+++.|+.+..|+....... +.+.. -...+.+++.+|||..+++
T Consensus 99 ~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~----~~~~~------------~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVII----RIWKE------------QKPLVSSLCISPDGKILLT 161 (541)
T ss_pred CCCCCcceeeeccccc-CceEecCCceeEEEEecccceee----eeecc------------CCCccceEEEcCCCCEEEe
Confidence 5689999999999887 79999999999999999887653 22332 2256889999999999999
Q ss_pred EcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-----CCEEEE-ecCCCcEEEEecCC
Q 010206 360 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-----GGRVAT-GSYSNLFRVFGCSE 430 (515)
Q Consensus 360 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s-~s~dg~i~iw~~~~ 430 (515)
++. .|++||+.+ ++.+.+|.+|...++ ++.|..+ |.++.+ ...+..+.+|-+..
T Consensus 162 as~-~ik~~~~~~-kevv~~ftgh~s~v~---------------t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 ASR-QIKVLDIET-KEVVITFTGHGSPVR---------------TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccc-eEEEEEccC-ceEEEEecCCCcceE---------------EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 885 999999997 999999999998754 6666665 666654 44566677887654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-07 Score=92.96 Aligned_cols=387 Identities=11% Similarity=0.108 Sum_probs=195.9
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccC--cc-cccccccCCccceeeeecccCCCcc------cc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRD--LE-MMDYSMSRHPEFRYKTEFQSHEPEF------DY 105 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~h~~~~------~~ 105 (515)
...|.|++||||+..||..+.+|+|.+....=.......... +. ....++.|.. -.+.|+|..... ++
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk---KeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK---KETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc---ccCccCcchhhhhhhhccCC
Confidence 458999999999999999999998887653211100000000 00 0000111111 111222221110 00
Q ss_pred c------ccccccceeEEEEEeecCCCcEEEeeeC------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 106 L------KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 106 ~------~~~~~~~~v~~l~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
. ..+.....-..|+| ..||.++++.+. -+.+++|+-+ |.+....+.. .|-
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~gL------- 258 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------DGL------- 258 (928)
T ss_pred CCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------CCc-------
Confidence 0 00112345678999 889999999764 2689999876 5544433311 011
Q ss_pred CCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 174 ~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
...++|.|.|..+...... .....|.+|. ..+-.-++.... .......|..+.|++|+..|+..
T Consensus 259 e~~l~WrPsG~lIA~~q~~---------~~~~~VvFfE-----rNGLrhgeF~l~-~~~~~~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRL---------PDRHDVVFFE-----RNGLRHGEFTLR-FDPEEEKVIELAWNSDSEILAVWL 323 (928)
T ss_pred cCCccCCCCCCEEEEEEEc---------CCCcEEEEEe-----cCCcEeeeEecC-CCCCCceeeEEEECCCCCEEEEEe
Confidence 1178999999987322110 1123444444 222111111111 12345678999999999999997
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccc--------ccc-
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--------THS- 323 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--------~~~- 323 (515)
.|. |.+|-...-....+.. + .+. ....+..+.|+|..+..|...+.+|.+..+++.-..... ...
T Consensus 324 ~~~-vqLWt~~NYHWYLKqe-i---~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va 397 (928)
T PF04762_consen 324 EDR-VQLWTRSNYHWYLKQE-I---RFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA 397 (928)
T ss_pred cCC-ceEEEeeCCEEEEEEE-E---Ecc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence 444 9999876433221100 0 111 233345599999877788888887777665543211100 001
Q ss_pred ---------ceeeeccCCCcccc-ccccccceeEEEEccCCCEEEE-EcCCeEEEEEeeCCCCC-------eeeEeeecc
Q 010206 324 ---------KLFEEQEAPGTRSF-FTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQVHEH 385 (515)
Q Consensus 324 ---------~~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s-~~~~~i~iwd~~~~~~~-------~~~~~~~~~ 385 (515)
..|.....|.+... --....+|.+++|++++..+++ -++|.|.+|........ ...+.....
T Consensus 398 VIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSM 477 (928)
T ss_pred EEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccc
Confidence 11111111111111 0112468999999998876666 45699999986542111 011111000
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcc--eeeeccCCCceeeEEECCCCCeeEee
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAE--STTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
. .. ...........++|..+..+++....+ ..+.++++...... ......-...+..+...+....++.-
T Consensus 478 ~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 552 (928)
T PF04762_consen 478 D---IS--DSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQ 552 (928)
T ss_pred c---cc--ccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEE
Confidence 0 00 000011123478888777776655543 67888887433211 12222233444444445554434555
Q ss_pred cCCCeEEE
Q 010206 461 SLSGVVRR 468 (515)
Q Consensus 461 ~~d~~v~l 468 (515)
..+|.+..
T Consensus 553 ~~~G~v~~ 560 (928)
T PF04762_consen 553 TNDGKVFQ 560 (928)
T ss_pred ECCCEEEE
Confidence 55776665
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-09 Score=90.38 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=112.5
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
..++.|++.+..++++ ++|.+.+-+....... +-+..+.|..++....|+...++++.+|+.|+.+..||+|.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le------~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~ 197 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLE------KVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI 197 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeee------ecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC
Confidence 4577889999999999 8999885544322211 11256789999999999988889999999999999999993
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.+. ..|.. .+-|...|.++.-+| .+.++++|++ ..|++||.++-++++..-....
T Consensus 198 p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G--------- 254 (339)
T KOG0280|consen 198 PKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG--------- 254 (339)
T ss_pred Ccc-----eeeec---------ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc---------
Confidence 221 11111 244778899999886 6889999987 8999999996577765543332
Q ss_pred ccCCCccceeeEEEcCCC--CEEEEecCCCcEEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~--~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|+.+.++|.- +.|+++-.+| .+|-+.+.+
T Consensus 255 -------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 255 -------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred -------ceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 26788888853 3455555544 566666554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-09 Score=95.81 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=93.8
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE--EEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.++++.+++...... .+ ...++|+++.|+|++ +.|+ .|-.--.+.+||++-.-. ++-
T Consensus 251 q~Lyll~t~g~s~~V--------~L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df---- 309 (566)
T KOG2315|consen 251 QTLYLLATQGESVSV--------PL-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDF---- 309 (566)
T ss_pred ceEEEEEecCceEEE--------ec-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeC----
Confidence 467777776222221 11 137899999999998 5544 455578899999875422 121
Q ss_pred CccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..++-+++-|+|.|++|+.++ - |.+.|||+.+ .+++..+...... -+.|+
T Consensus 310 --------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW~ 363 (566)
T KOG2315|consen 310 --------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEWS 363 (566)
T ss_pred --------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEEc
Confidence 126778899999999988753 2 9999999997 8888877765533 68999
Q ss_pred CCCCEEEEecC------CCcEEEEecC
Q 010206 409 GDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 409 ~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
|||++++|++. |+.++||+..
T Consensus 364 PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCcEEEEEeccccEEecCCeEEEEec
Confidence 99999998874 7899999986
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-09 Score=91.71 Aligned_cols=206 Identities=12% Similarity=0.200 Sum_probs=138.7
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
-..+++++++.++-..|+.|-.+|++.-+.+...-. ...+...+..|. .
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~------------~ 115 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ------------A 115 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh------------c
Confidence 456889999999999999999999998887653211 111333455565 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|..+-|+ ...+.+++.+.|..+.---.+.+....-..+... ++.+.+.-.
T Consensus 116 ~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~~----------- 166 (404)
T KOG1409|consen 116 RVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDAL----------- 166 (404)
T ss_pred ceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceeeE-----------
Confidence 89999994 4556899999998775444444432211111100 001111111
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+.|...|.+.+..+ ..... .......+|.+.+.+++|.+....|.+| .|..+.+||+--.+...
T Consensus 167 ---~~fvGd~~gqvt~lr~--~~~~~-----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--- 233 (404)
T KOG1409|consen 167 ---YAFVGDHSGQITMLKL--EQNGC-----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--- 233 (404)
T ss_pred ---EEEecccccceEEEEE--eecCC-----ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee---
Confidence 2266777777766542 11111 1112247999999999999999999999 89999999996433221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
..+.+|...|..+...+.- +.+.+++.||.|.+||+....
T Consensus 234 ----~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 234 ----YELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ----eeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 1567889999999888776 899999999999999997643
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=105.96 Aligned_cols=184 Identities=14% Similarity=0.024 Sum_probs=133.5
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..++.++.+..+-+||...+....+....... .-....-+.++++.-++++|+- +.|.+|+... .+
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------------~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~-dn 166 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------------TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE-DN 166 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceE------------EEEeEEEEeccCcEEEEEeccccccEEEEeccc-cC
Confidence 57888888889999998776543321111000 0012333445667778888887 9999999984 33
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
....+.+|++. ++++.++.||+++++.|+|.++++|++.+.+....+.=+|...+.++.+.|+
T Consensus 167 ~p~~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 167 KPIRLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred CcceecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence 33368888876 5699999999999999999999999999987666677899999999999999
Q ss_pred eeEeecCCCeEEEecCCCCCccccCCccccc-cCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 456 SRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 456 ~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+++++.|.+.+++ .....++. ...+| ...|..++.+++...+++++.|+ +.+|+
T Consensus 230 ~i~t~gedctcrvW---~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 RIITVGEDCTCRVW---GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEeccceEEEEE---ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999999993 11111111 22223 45789999999888888777554 66653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-08 Score=96.86 Aligned_cols=204 Identities=11% Similarity=0.036 Sum_probs=112.4
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCc--EEEEEecCC--eEEEEecCcccccccccceeeeccC
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN--MLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~--~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|.+.|....+.. .+......+.+-+|+|||.. ++++...+| .|.+.++..++.. .+
T Consensus 166 ~l~~~d~dG~~~~---------~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--~l-------- 226 (428)
T PRK01029 166 ELWSVDYDGQNLR---------PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--KI-------- 226 (428)
T ss_pred eEEEEcCCCCCce---------EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--Ee--------
Confidence 5666666533321 23334555678899999833 222444444 5777787766421 01
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC--C--eE--EEEEeeCC--CCCeeeEeeeccccccccccccCCCcccee
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TL--KLWDINMD--SGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i--~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
....+......|||||+.|+...+ | .+ .+|++... +.+.......... ..
T Consensus 227 -------t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~---------------~~ 284 (428)
T PRK01029 227 -------LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT---------------QG 284 (428)
T ss_pred -------ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC---------------cC
Confidence 111133456799999998886432 2 33 33665531 1222211111111 12
Q ss_pred eEEEcCCCCEEEEec-CCCcEEEE--ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC-C--eEEE--ecCCCCC
Q 010206 404 ECCLSGDGGRVATGS-YSNLFRVF--GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-G--VVRR--VKGADNS 475 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s-~dg~i~iw--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~--~v~l--~~~~~~~ 475 (515)
..+|+|||+.|+..+ .+|...+| ++...+.....+..+...+....|+|+|+.|+..+.+ + .+.+ .++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 679999999887655 46655555 4432222223444444566788999999998876543 3 3444 2222221
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.+ ......+...+|+|||+.|+..+
T Consensus 365 --~L----t~~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 365 --QL----TTSPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred --Ec----cCCCCCccceEECCCCCEEEEEE
Confidence 11 11123567899999999988543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.8e-07 Score=81.68 Aligned_cols=223 Identities=12% Similarity=0.069 Sum_probs=140.1
Q ss_pred EecCCCCEEEEeCCCcEEEEeCCCCCcccceecccC---ccccccCCceEEEE-EecCCCcEEEEEecCCeEEEEecCcc
Q 010206 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP---ANMEDLTEVITSAE-FHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 241 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~i~~i~-~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
..+.||+.++-...|.|.+||..+.+...--+++.. ..+.....+..-+. |++-.+.+++..+. |...+.+.-.+
T Consensus 273 ~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 273 NANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred ccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 346799999998889999999986653321111110 00111111111111 33332266666554 55666655443
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
..+ --+|.+.|.-..+..+++-++.|. | ..+-|+|... ..++.+...-+.
T Consensus 352 ~~i------------------qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~~lg~-------- 403 (668)
T COG4946 352 YSI------------------QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEKDLGN-------- 403 (668)
T ss_pred eeE------------------EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeCCccc--------
Confidence 321 123446688888887777777775 4 4999999984 444444433322
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe----EEE--
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV----VRR-- 468 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~----v~l-- 468 (515)
|.++..+++|++++.+.....+.+.|+.++... ..-+....-+....|+|+++++|.+--+|. |++
T Consensus 404 -------I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 404 -------IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred -------eEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 559999999999999999999999999998433 333445567899999999999999887764 444
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..+.+.... ....+.=.+-||.||+++|..-+
T Consensus 476 m~~~Kiy~v------TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGKIYDV------TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeEEEe------cCCcccccCcccCCCCcEEEEEe
Confidence 334333311 01123336789999999987544
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-09 Score=90.02 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=142.3
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+++++.+.++...|+.| +.|++.-+.+...-.... .++....|...+..+-|+-.. ..+++.+.|..+.---.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEee
Confidence 567889999999999999 899999887653322211 113556799999999999876 79999999988776555
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC-CCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 391 (515)
+.+..+.. +.++. .-+++.+.-. +...|+. |.|.+-.+.. .-.++.++.+|...
T Consensus 144 e~~~~lg~--Y~~~~---------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----- 199 (404)
T KOG1409|consen 144 ESGNRLGG--YNFET---------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----- 199 (404)
T ss_pred ccCCcccc--eEeec---------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc-----
Confidence 55543321 11111 1112222111 4445654 7777766643 24456777777655
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+++|.+..+.|++|..|..+.+||+.-.......+.+|...|..+...+--+.+.+++.||.|.+
T Consensus 200 ----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 200 ----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 5599999999999999999999999998776667899999999999999888899999999999988
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=101.17 Aligned_cols=236 Identities=10% Similarity=0.125 Sum_probs=158.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc-------cCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV-------KPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
.....|++|+....++++| .||.+++..+.+...-.+...+ -.+++++|++.|.-+.|+.+. +.|.+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence 4567899999999999998 8999999988765432221110 014689999999999999987 889999999
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.|.+|-+-.+.-+.+.+.. . ..+.|.+++|..||..+... .||.|.+=.++-+.---+.+++..
T Consensus 93 GlIiVWmlykgsW~EEMiNn---R-----------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINN---R-----------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL 158 (1189)
T ss_pred ceEEEEeeecccHHHHHhhC---c-----------CccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe
Confidence 99999999888755331111 0 12568999999999988875 457777666652111112222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeec--c----CCCceeeEEE----
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE--A----SKNPMRRQVQ---- 450 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~--~----~~~~v~~~~~---- 450 (515)
- ..+.|++|.+.+..+-..|.+++||....-... .... + ....+..+.|
T Consensus 159 l-----------------~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 159 L-----------------AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred c-----------------cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 1 157899999988888889999999976421100 1010 0 0011223332
Q ss_pred ----CCCCCeeEeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 451 ----TPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 451 ----~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.|+.+.|+.+-..|.+.+.. -..+.+ ..++..-.|....|+++|..||+++
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-----vv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-----VVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCC-----eEEecccEeecceecCCCcEEEEcc
Confidence 46899999999999999822 222221 1223346789999999999999776
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=104.11 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=182.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+.-.+++.++.++|.|+-+|.++.-| +.+-|+...-. ..+++..+..
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-------------------ppr~l~h~tp------------- 67 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-------------------PPRWLHHITP------------- 67 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcC-eEEEeccCCCC-------------------CceeeeccCc-------------
Confidence 45567899999999999999999887 55667654321 1112222222
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
-.|-.+.|+|.+...+-++......-.+|++...
T Consensus 68 -w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s--------------------------------------------- 101 (1081)
T KOG0309|consen 68 -WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS--------------------------------------------- 101 (1081)
T ss_pred -chhcceecccCCCCceeEEecCcchhhhhhhhcC---------------------------------------------
Confidence 2377788888766556666555555567775432
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.+..|.+ ++.+|...|+.+.|+|+.. .++++ -|-.+..||+++....+
T Consensus 102 -----------s~~aIef-------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 102 -----------SSNAIEF-------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred -----------CccceEE-------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence 1222221 2478999999999998654 56667 69999999999887665
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
... ..-......++|+-..+..+| .+..+.|++||++.+... ...+++|...|..+.
T Consensus 152 ys~-------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 152 YST-------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---------------LCSLKGHVSSVNSID 208 (1081)
T ss_pred eee-------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---------------eEEecccceeeehHH
Confidence 432 222445678999887755555 566778999999987632 223566778899998
Q ss_pred Ecc--CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC--EEE---------E
Q 010206 350 FAR--NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVA---------T 416 (515)
Q Consensus 350 ~s~--~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------s 416 (515)
|.. .+..+-+..|++|+.||..+..+.-....... +.++.-++-|-|+ ++. -
T Consensus 209 fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~---------------~piw~~r~~Pfg~g~~~mp~~G~n~v~~ 273 (1081)
T KOG0309|consen 209 FNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN---------------FPIWRGRYLPFGEGYCIMPMVGGNMVPQ 273 (1081)
T ss_pred HhhhhhhhhcccCCCCceeeecccccccccceecccc---------------CcceeccccccCceeEeccccCCeeeee
Confidence 875 33344445679999999875322211111111 1123334444322 222 1
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC----------CCeeEeecCCCeEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~~~d~~v~l 468 (515)
---++....|+..++...+.++.+|.+.|....|-.. .-.|++=|.|.++|+
T Consensus 274 ~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 274 LRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred ccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 1122334456666666667899999998876665322 126889999999998
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-07 Score=81.14 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=103.4
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCC-cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
+|...|.-..+..+++-++.| .|| .+-++|.++++.. .+...-+.|.++..+|+| +.++.+.....|.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 455667777777777778888 666 8999999877533 334556889999999999 8899899999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE---cC--CeEEEEEeeCCCCCeeeEeeec
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~--~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|+.++... ..+.. -.+-|+.+.|||+++++|-+ +. ..|+++|+.. ++... .....
T Consensus 427 vididngnv~-----~idkS-----------~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~-vTT~t 488 (668)
T COG4946 427 VIDIDNGNVR-----LIDKS-----------EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYD-VTTPT 488 (668)
T ss_pred EEEecCCCee-----Eeccc-----------ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEE-ecCCc
Confidence 9999998742 22211 12579999999999999975 22 7899999984 44332 22221
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
... ++-+|.||+++|.--+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 110 2678999999877443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=91.63 Aligned_cols=223 Identities=16% Similarity=0.152 Sum_probs=127.0
Q ss_pred CCeEEEEecCC---CCEEEEeCCCcEEEEeCCCCCcc---------------------------------cceecccCcc
Q 010206 235 YHINSISNNSD---GETFISADDLRINLWNLEISNQS---------------------------------FNIVDVKPAN 278 (515)
Q Consensus 235 ~~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~~---------------------------------~~~~~~~~~~ 278 (515)
..|..+.|..+ ..+|+++.|.+|++|.+...... ..++..+|..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 45666776543 44677779999999998654100 0011112211
Q ss_pred --ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--C
Q 010206 279 --MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--G 354 (515)
Q Consensus 279 --~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~ 354 (515)
...|.--|.++.|+.|. ..++ ...|=.|.+|++.-.... ....+... .-+.....-|++..|+|. .
T Consensus 166 vyaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~s---FnIVDiKP-----~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGS---FNIVDIKP-----HNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch-heee-eccceeeeeccccccCCc---eEEEeccC-----ccHHHHHHHHhhcccCHhHcc
Confidence 13566778899999886 4555 456778999998653221 11111111 012334457899999994 3
Q ss_pred CEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 355 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 355 ~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
-++++.+.|.|++-|++...-+................-.-...+..|..+.|+++|+++++-+. .+|+|||++..+..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 34445566999999998421111111000000000000000111223458999999999998765 58999999987766
Q ss_pred eeeeccCCC------------ce---eeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKN------------PM---RRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~------------~v---~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+..-|.. .| -.+.++.+.+.+++|+.....-+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 666654321 11 25567777777777776544333
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-07 Score=81.63 Aligned_cols=249 Identities=9% Similarity=0.035 Sum_probs=132.6
Q ss_pred cCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 123 ~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+++++.++++. .+..|.+||..+.+..........+..... ..+..++++|||+.+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~--------~~~~~~~ls~dgk~l------ 119 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG--------TYPWMTSLTPDNKTL------ 119 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc--------CccceEEECCCCCEE------
Confidence 56677777764 478999999999988776665433211110 111167999999988
Q ss_pred CCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
+... .++.+.+.| +...+. .....- .....-.. .++...++-+.||......+.+.....
T Consensus 120 ------~V~n~~p~~~V~VvD--~~~~kv------v~ei~v--p~~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~g~~~- 181 (352)
T TIGR02658 120 ------LFYQFSPSPAVGVVD--LEGKAF------VRMMDV--PDCYHIFP-TANDTFFMHCRDGSLAKVGYGTKGNPK- 181 (352)
T ss_pred ------EEecCCCCCEEEEEE--CCCCcE------EEEEeC--CCCcEEEE-ecCCccEEEeecCceEEEEecCCCceE-
Confidence 5333 367888888 332211 111000 01111111 112222222333333333222222110
Q ss_pred eecccCccccc-----cCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 271 IVDVKPANMED-----LTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 271 ~~~~~~~~~~~-----~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.... ..+.. ...+ .|.+ ++ ..+..... |.|.+.|+........ ..+......... -.-..+.
T Consensus 182 ~~~~--~vf~~~~~~v~~rP----~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~--~~~~~~~~~~~~--~~wrP~g 249 (352)
T TIGR02658 182 IKPT--EVFHPEDEYLINHP----AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFL--PAIEAFTEAEKA--DGWRPGG 249 (352)
T ss_pred Eeee--eeecCCccccccCC----ceEcCCC-cEEEEecC-CeEEEEecCCCcceec--ceeeeccccccc--cccCCCc
Confidence 0000 00000 0111 4566 66 56655555 9999999765432211 111110000000 0001234
Q ss_pred eeEEEEccCCCEEEEEc---------C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-
Q 010206 345 ISDIKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG- 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~---------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 412 (515)
+.-++++|+++.++... + +.|.++|..+ .+.+..+..... ++.++++||++
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp 312 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKP 312 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCe
Confidence 45599999999888732 1 5899999987 777776653322 34899999999
Q ss_pred EEEEec-CCCcEEEEecCCCC
Q 010206 413 RVATGS-YSNLFRVFGCSEGS 432 (515)
Q Consensus 413 ~l~s~s-~dg~i~iw~~~~~~ 432 (515)
+|++.. .++.|.++|..+++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCe
Confidence 777665 67889999999874
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-10 Score=112.59 Aligned_cols=202 Identities=18% Similarity=0.307 Sum_probs=143.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
....+-..|.++.=+|...+-+||+.||.|++|....++.+ ..++.-.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g--------- 2250 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAG--------- 2250 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccC---------
Confidence 34556788999999999999999999999999999877643 1222111
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..+|+.+.|+ ..|..+..+..||.+.+|.+.... ...
T Consensus 2251 --~s~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~pk~---~~s------------------------------------ 2287 (2439)
T KOG1064|consen 2251 --NSRVTRSRFN--HQGNKFGIVDGDGDLSLWQASPKP---YTS------------------------------------ 2287 (2439)
T ss_pred --cchhhhhhhc--ccCCceeeeccCCceeecccCCcc---eec------------------------------------
Confidence 1568899995 556689999999999999876211 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe----CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~ 265 (515)
-+.|.....++.|-. ..++++ +++.+.+||....
T Consensus 2288 ----------------------------------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2288 ----------------------------------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ----------------------------------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 123445555555544 445553 4889999997543
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.... . .-..|.+.++++++.|.. ++|++|+.+|.|++||++..++... .
T Consensus 2326 ~~~s-~------v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrql~h~-----------------------~ 2374 (2439)
T KOG1064|consen 2326 PMNS-L------VHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQLRHT-----------------------F 2374 (2439)
T ss_pred cccc-e------eeeecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHHHHHH-----------------------h
Confidence 3221 1 116799999999999998 8999999999999999998876432 1
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.. +. ...++++|+. |.++||++.. ...+.++...
T Consensus 2375 ~~--~~-~~~~f~~~ss~g~ikIw~~s~-~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2375 QA--LD-TREYFVTGSSEGNIKIWRLSE-FGLLHTFPSE 2409 (2439)
T ss_pred hh--hh-hhheeeccCcccceEEEEccc-cchhhcCchh
Confidence 11 33 4568888876 9999999986 5666666543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=86.60 Aligned_cols=288 Identities=15% Similarity=0.196 Sum_probs=158.8
Q ss_pred cceEEEEECCCCCeEEeecC-----------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 36 DIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
-.|.-+.|||..+||+|=+. ...++|||+.+|.....+ ..+.+..
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF--------------------~~~~~~~---- 305 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF--------------------PVIKSPY---- 305 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce--------------------eccCCCc----
Confidence 35788999999999998652 247999999998754111 0011111
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..-.-..| +.|+++++--.. ..|.||+...-.+........ ..|. ...|+|.+.
T Consensus 306 --------~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr-------~FswsP~~~ 359 (698)
T KOG2314|consen 306 --------LKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIR-------DFSWSPTSN 359 (698)
T ss_pred --------cccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC--------cccc-------CcccCCCcc
Confidence 11223567 566777777665 568999876643322222221 1222 567777776
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C----C-----
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D----D----- 254 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~----d----- 254 (515)
.|.. +..+.-.....-+.+.+.. .+..+.. .-|.-.=..+.|-.+|.+|+.- + .
T Consensus 360 llAY----wtpe~~~~parvtL~evPs-----------~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 360 LLAY----WTPETNNIPARVTLMEVPS-----------KREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred eEEE----EcccccCCcceEEEEecCc-----------cceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 6521 0000000000001111100 0111110 0111111245677788888863 1 1
Q ss_pred -CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec---CCeEEEEecCcccccccccceeeecc
Q 010206 255 -LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
..+.|+.++........+ .....|...+|-|.| +.+++-+. ..++.+|.+++.....+.++.++.
T Consensus 424 f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-- 492 (698)
T KOG2314|consen 424 FSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-- 492 (698)
T ss_pred EeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--
Confidence 134566666444433322 246778999999999 55544332 457888988753322233333332
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEE---cC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
...+.+.|+|.|++++.+ +. |.+.++|+.. .....+- ..|.. .+.+
T Consensus 493 ------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~----------------at~v 543 (698)
T KOG2314|consen 493 ------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA----------------ATEV 543 (698)
T ss_pred ------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------------cccc
Confidence 246789999999999975 33 8999999874 1111111 11111 2378
Q ss_pred EEcCCCCEEEEecC------CCcEEEEecC
Q 010206 406 CLSGDGGRVATGSY------SNLFRVFGCS 429 (515)
Q Consensus 406 ~~s~~~~~l~s~s~------dg~i~iw~~~ 429 (515)
.|.|.|+|++|++. |..-++|+..
T Consensus 544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred eECCCCCEEEEeeehhhhccccceEEEEee
Confidence 99999999999875 4456677776
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.2e-08 Score=93.57 Aligned_cols=407 Identities=12% Similarity=0.053 Sum_probs=196.3
Q ss_pred ccccceEEEEECCC------C------CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 33 ~h~~~v~~v~~s~~------g------~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
.|+..|+.+.|+|- + -+||+++..|.|.+||...+..+ ..++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCCC
Confidence 57899999999982 1 26888999999999998766532 3355555
Q ss_pred CcccccccccccceeEEEEEeecCCCc--EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCce
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (515)
.++..++|.+..+.. .|++-....++.+|+..+|+............. .+.
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs---------------~f~ 162 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS---------------CFR 162 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee---------------eee
Confidence 779999998865543 455557778999999999986655443322111 111
Q ss_pred eec-CCCccccc--ccc-CCCCCCCCCCCcccEEeeeeeecccccccccceeeeee--ccCcC---------CeEEEEec
Q 010206 179 YMA-NGGCGERN--FGC-ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA--HAHDY---------HINSISNN 243 (515)
Q Consensus 179 ~~~-~g~~l~~~--~~~-~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~---------~v~~~~~~ 243 (515)
+.| |.+.+.++ .+. .+-+++...-.++..+.+. +........ ...+... ..+.. ....++|+
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q--I~sd~Sdl~-~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ--ITSDHSDLA-HLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE--EecCccchh-hhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 222 11111000 000 0000111111222222222 111100000 0000000 00000 01235667
Q ss_pred CCCCEEEE-eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-cEEEEEecCCeEEEEecCccccccc
Q 010206 244 SDGETFIS-ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 244 ~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
|.-+.++. .--..+.++|++-......+ .++ .+.+.-+.+-|+.. ..|++...||.+.+|-.+......+
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vv------pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVV------PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEE------Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCcccc
Confidence 76444433 46677999999855443321 122 33344455656542 5788899999999997654221110
Q ss_pred c-ccee--eeccCCCccccccccccceeEEEEccC-CCEEEE-EcCCeEEEEEeeCCCCCeeeEee-----------ec-
Q 010206 322 H-SKLF--EEQEAPGTRSFFTEIIASISDIKFARN-GRHILS-RDYMTLKLWDINMDSGPVATFQV-----------HE- 384 (515)
Q Consensus 322 ~-~~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s-~~~~~i~iwd~~~~~~~~~~~~~-----------~~- 384 (515)
. ...+ +...+....+.+.. ..+......|. ...++. -++|.+.+|.+.+ ++.-..... ..
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~--~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEE--FRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred ccchhhccccccceEEEeechh--cccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCc
Confidence 0 0000 00000000000000 01112222333 222222 2446777887764 221100000 00
Q ss_pred -cc--cccccccccCC-Ccccee-----------eEEEcCCC-------CEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 385 -HL--RPKLCDLYEND-SIFDKF-----------ECCLSGDG-------GRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 385 -~~--~~~~~~~~~~~-~~~~v~-----------~~~~s~~~-------~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
.. ...+..+...+ .-.+.+ -..-.|.+ .++|.|.+.|+|.++|+.++ .+...+..|.
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht 467 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHT 467 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccc
Confidence 00 00000000000 000000 11112222 26789999999999999987 5668889999
Q ss_pred CceeeEEECCCCCeeEeecC-----CCeEE----E---ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 443 NPMRRQVQTPSRPSRPLGSL-----SGVVR----R---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 443 ~~v~~~~~~~~~~~l~s~~~-----d~~v~----l---~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
..|..+.|....+++-.+.. .|.++ + ..|-... +.+..-.-..+|+.+..|..++||++.-.
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~---fR~l~~~despI~~irvS~~~~yLai~Fr 541 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR---FRGLQKPDESPIRAIRVSSSGRYLAILFR 541 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---cccCCCCCcCcceeeeecccCceEEEEec
Confidence 99999999776655422211 11111 1 1121111 11112223578999999999999997753
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-08 Score=81.83 Aligned_cols=254 Identities=12% Similarity=0.094 Sum_probs=153.7
Q ss_pred EEEEECC-----CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 39 SAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 39 ~~v~~s~-----~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
+-+.|-| .-.+||.|+.-|...+|...+.+.. ......|.. .++
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h----------------------~~~cd~snn------~v~--- 119 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGH----------------------LYQCDVSNN------DVT--- 119 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccc----------------------eeeeccccc------chh---
Confidence 3445655 2348999999999999998765532 111111210 000
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
-+...+- . ...+..++.|.++++.+++.+.......... ....++++++|++.+
T Consensus 120 ~~~r~cd--~--~~~~~i~sndht~k~~~~~~~s~~~~~h~~~---------------~~~ns~~~snd~~~~------- 173 (344)
T KOG4532|consen 120 LVKRYCD--L--KFPLNIASNDHTGKTMVVSGDSNKFAVHNQN---------------LTQNSLHYSNDPSWG------- 173 (344)
T ss_pred hhhhhcc--c--ccceeeccCCcceeEEEEecCcccceeeccc---------------cceeeeEEcCCCceE-------
Confidence 0111111 1 1247778999999999998765443332221 001178899999988
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
++.+....|-.|. +.+..... .+++.......=.+..|+.....+|++ .||++.|||++....+....
T Consensus 174 -----~~Vgds~~Vf~y~--id~~sey~----~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 174 -----SSVGDSRRVFRYA--IDDESEYI----ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred -----EEecCCCcceEEE--eCCcccee----eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 7777788888777 33322211 112233444555688899999999999 89999999999776554322
Q ss_pred cccCccccccCCceEEEEEecCCC-cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
. .+-..|.+.++.+.|++-|. .+|+..-.-+.+.+-|+|++.-+.. +...+.. .+...+..|..-.|+
T Consensus 243 s---strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~-I~i~~d~-------~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 243 S---STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV-IVIPDDV-------ERKHNTQHIFGTNFN 311 (344)
T ss_pred c---ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE-EecCccc-------ccccccccccccccc
Confidence 1 23355899999999998653 2455555567899999999864322 1111111 111122347777788
Q ss_pred cCCCEEEEEcCCeEEEEEee
Q 010206 352 RNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 352 ~~~~~l~s~~~~~i~iwd~~ 371 (515)
.++.-+.+.+.-.+.=|++.
T Consensus 312 ~~n~s~~v~~e~~~ae~ni~ 331 (344)
T KOG4532|consen 312 NENESNDVKNELQGAEYNIL 331 (344)
T ss_pred CCCcccccccchhhheeecc
Confidence 77766666554344455554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.3e-07 Score=81.46 Aligned_cols=255 Identities=10% Similarity=0.106 Sum_probs=138.0
Q ss_pred ECCCCCeEEeecC----------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 43 ~s~~g~~lasg~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+||||+.|+++.. +..|.+||..+.+....+... -.|++. .+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p---------~~p~~~-----~~-------------- 104 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP---------EGPRFL-----VG-------------- 104 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC---------CCchhh-----cc--------------
Confidence 9999998887765 679999999988754221110 000000 00
Q ss_pred ceeEEEEEeecCCCcEEEeee-C-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..-..+++ +++|++|++.. . +..|.+.|+.+++.......... ..++... -...+....||+.+.
T Consensus 105 ~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-------~~vy~t~-e~~~~~~~~Dg~~~~--- 171 (352)
T TIGR02658 105 TYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-------YHIFPTA-NDTFFMHCRDGSLAK--- 171 (352)
T ss_pred CccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-------cEEEEec-CCccEEEeecCceEE---
Confidence 12335566 67788888764 3 79999999999987775554210 0000000 000112233333321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE-EEecC-CCCEEEEeCCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DGETFISADDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~ 268 (515)
++-..+|... ......+ ......+.. -.|.+ +++++..+..|+|.+.|+......
T Consensus 172 --------v~~d~~g~~~--------------~~~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 172 --------VGYGTKGNPK--------------IKPTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred --------EEecCCCceE--------------Eeeeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 1111111111 0011110 110000000 03345 888888875599999997543321
Q ss_pred c----ceecccCccccccCCceEEEEEecCCCcEEEE-Ee---------cCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 269 F----NIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 269 ~----~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
. .++......-....+.+.-++++|++ +.++. .. ..+.|.++|..+++...+ +...
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~----i~vG----- 298 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK----IELG----- 298 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEE----EeCC-----
Confidence 1 11111000001133445559999998 55554 32 125799999988875432 1111
Q ss_pred cccccccccceeEEEEccCCC-EEEEEc--CCeEEEEEeeCCCCCeeeE
Q 010206 335 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~ 380 (515)
..+..++++||++ +|++.+ .+.|.++|..+ .+.++++
T Consensus 299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3688999999999 777655 38899999986 7777766
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-07 Score=95.13 Aligned_cols=188 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred eEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCcccceec-ccCcccc------ccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 237 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD-VKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 237 v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~------~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
...++++|+ +.++++. .++.|++||..++.... +.. -...... ..-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 457899994 5555554 68899999987543210 000 0000000 112345789999998346667777899
Q ss_pred EEEEecCccccccc---------ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 308 IRLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 308 i~~wd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
|++||+.++..... ....+........ ...-.....++++++|+.+++-.. ++|++||..+ + .+
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g-~v 837 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-K-RV 837 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-C-eE
Confidence 99999987642100 0000000000000 001123468899999987777555 9999999874 3 33
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
.++.+....... ..............++++++|+++++-+.++.|++||+.++.
T Consensus 838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 333332210000 000000111123479999999999998999999999998864
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-07 Score=85.98 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=175.1
Q ss_pred cceEEEEECCCCCeEEeecCCC---------------eEEEEEcccCcccCccccCccc-ccc-cccCCccceeeeeccc
Q 010206 36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQRRDLEM-MDY-SMSRHPEFRYKTEFQS 98 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg---------------~v~vw~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 98 (515)
..|..+.|||.++||.+=+..+ .+.|||..++..+......... ..- -+.|+-+-.+...+-+
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 4678899999999999865433 4999999988765322211111 000 0111111111111111
Q ss_pred -----CC--Ccc--cccccccccceeEEEEEeecCCCcEEEe-----eeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 99 -----HE--PEF--DYLKSLEIEEKINKIRWCQSANSALYLL-----STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 99 -----h~--~~~--~~~~~~~~~~~v~~l~~~~~~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
|+ +.+ -+.+.+. ...|....|+|..+...|+. ...+.++++|.+..++......+-.-.
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr-~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~------ 224 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLR-PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS------ 224 (561)
T ss_pred CeEEEEecCCccccCchhhcc-ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec------
Confidence 11 000 0111111 26688888988766555555 356889999999866544332222100
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 244 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (515)
-..+.|.+.|+++.++..... ..-=+--....+.+++ +.... +. . ...-.++|..++|.|
T Consensus 225 ---------~~qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~--~~e~~------i~-V-~~~~~~pVhdf~W~p 284 (561)
T COG5354 225 ---------GVQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLR--ITERS------IP-V-EKDLKDPVHDFTWEP 284 (561)
T ss_pred ---------ccEEEEecCCceEEEEEEEee-ecccceeccceEEEEe--ecccc------cc-e-eccccccceeeeecc
Confidence 016788888888755422111 0000111234566666 22111 11 1 124468999999999
Q ss_pred CCCEEEE--e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---CeEEEEecCcccc
Q 010206 245 DGETFIS--A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSAL 318 (515)
Q Consensus 245 ~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~ 318 (515)
.++.+++ | ....+.++|++.. ..+ ......=..+.|+|.+ ++++.++.| |.|.+||......
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~N-l~~----------~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGN-LRF----------YFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred cCCceeEEecccccceeecccccc-eEE----------ecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE
Confidence 9888876 4 5899999999854 221 1123334567899998 788776664 7899999876654
Q ss_pred cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-------CCeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 319 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-------YMTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+. ..+.+ ....-+.|+||++++.+.. |..|+|||+. +..+..
T Consensus 353 ~~---~~~~~--------------~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~--g~~~fe------------ 401 (561)
T COG5354 353 VA---GAFNG--------------LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY--GAKVFE------------ 401 (561)
T ss_pred EE---EEeec--------------CCceEeeccCCceEEEecCCCcccccCcceEEEEec--Cchhhh------------
Confidence 32 12222 2356678999999998742 3789999997 333321
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
.+.+.|.|.|++.-+.+.+.
T Consensus 402 ----------l~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 402 ----------LTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----------hhhccccCCcccceeeccCC
Confidence 12566777777666555443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-06 Score=91.73 Aligned_cols=227 Identities=10% Similarity=0.091 Sum_probs=131.4
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc--cCccccc-------cCCceEEEEEecCCCcEEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--KPANMED-------LTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~-------~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
.....++++++++.|..+ ..+.|+.+|+.++.. ..+... ......+ .-.....++++|++..++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 446788999988876665 467899999865431 111000 0000000 0123468999995437778888
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCcc---ccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~ 378 (515)
.++.|++||..++... .+.+....... ......-.....++++|+++.|+.++ + +.|++||+.+ +.. .
T Consensus 703 ~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~-~ 775 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGS-R 775 (1057)
T ss_pred CCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcE-E
Confidence 8999999999776431 12111000000 00000113457799999998666553 3 8999999975 322 1
Q ss_pred eEeeecc-ccccccccccC------CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCccee------------eec
Q 010206 379 TFQVHEH-LRPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST------------TLE 439 (515)
Q Consensus 379 ~~~~~~~-~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~------------~~~ 439 (515)
.+.+... .......+-.. .....-..++++++|+++++-+.+++|++||..++..... ...
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 1111000 00000000000 0011123789999999988889999999999986522110 011
Q ss_pred cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 440 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 440 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
+.......++++++|+.+++-+.++.|+++
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 223456789999999999999999999983
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=94.04 Aligned_cols=243 Identities=16% Similarity=0.138 Sum_probs=136.5
Q ss_pred ccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 231 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
..|..+|.++.|-.+-+.++++ |+.|.+||.-.+....++.+. .-.+..+.|.++.- -+.+-+++.++...++++
T Consensus 781 ~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 781 QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLEN-VDRHILIAGCSAESTVKL 855 (1034)
T ss_pred hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEeccc-Ccchheeeeccchhhhee
Confidence 6899999999999988887765 567999998766554333221 11122333444422 123133444477899999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+|.+...... .+...+. .+-.+.+++++..+.|+.++++- .|.|.+.|.++ ++.+..+...+...
T Consensus 856 ~DaRsce~~~----E~kVcna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpmecdl-- 921 (1034)
T KOG4190|consen 856 FDARSCEWTC----ELKVCNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPMECDL-- 921 (1034)
T ss_pred eeccccccee----eEEeccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcccchh--
Confidence 9999876432 2222211 11225689999999999999984 59999999997 77665554332111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE-EecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i-w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++ .|..+.|+....|.++.+ |..-.+... ...+....|.. -...-|+.|++......+.+
T Consensus 922 -------------lqla-apsdq~L~~saldHslaVnWhaldgimh-~q~kpppepah--flqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 922 -------------LQLA-APSDQALAQSALDHSLAVNWHALDGIMH-LQDKPPPEPAH--FLQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred -------------hhhc-CchhHHHHhhcccceeEeeehhcCCeee-eccCCCCcchh--hhhccCceeEEeccCcEEEE
Confidence 1222 345567777777888888 876655222 22221111111 11123455555555555555
Q ss_pred e-cCCCCCccccC--CccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 469 V-KGADNSALDAN--GNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 469 ~-~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
+ +..+....... ...-.+.+..++++--|=..-+..|...|
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 1 11111100000 01113456677888777666555555443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-07 Score=88.84 Aligned_cols=180 Identities=11% Similarity=0.042 Sum_probs=108.5
Q ss_pred CeEEEEecCCCCE-EEE-e-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeE
Q 010206 236 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~-l~s-~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i 308 (515)
......|+|||+. ++. . . +..|.++|+.+++.. .+....+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------EEecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678999999984 553 3 3 467899999766533 2222345556778999994444454444 457
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeeeEeeec
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.++|+.++... .+ ..+........|+|||+.|+..++ + .|.+.|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~~-----~L------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTLT-----QI------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcEE-----Ec------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 77787666421 11 111112234579999998886543 3 667777763 332 2222111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCC---------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
.. ...|||||++|+..+.. ..|.+.|+.++... .+... .......|+|||+
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence 11 24899999998765533 36788888877433 23222 1233578999999
Q ss_pred eeEeecCC
Q 010206 456 SRPLGSLS 463 (515)
Q Consensus 456 ~l~s~~~d 463 (515)
.++..+.+
T Consensus 381 ~I~f~~~~ 388 (419)
T PRK04043 381 SIMFIKYL 388 (419)
T ss_pred EEEEEEcc
Confidence 87666543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-07 Score=74.98 Aligned_cols=186 Identities=16% Similarity=0.199 Sum_probs=112.3
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcc-c-cccCCceEEEEEecCC-----CcEEEEEe
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSS 303 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~i~~~p~~-----~~~l~~~~ 303 (515)
.....-+-++|+||+.+||.+ +.|+|+++|+.. ...+. ++|.. . ......|..+.|.+.. ...|++-.
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~---I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV---IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE---cCcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 334456789999999999999 899999999974 33332 22211 1 1124567777775432 13667777
Q ss_pred cCCeEEEEecCccccc-ccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C--C---------eEEEEEe
Q 010206 304 SKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y--M---------TLKLWDI 370 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--~---------~i~iwd~ 370 (515)
.+|.++-|-+..+... .+....|. +...+...|.++.++|..++|+.|+ . . -+..|.+
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFS---------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEE---------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence 8888887776432110 00011111 1122346899999999988888753 1 1 3677887
Q ss_pred eCCCCCeeeEeee--cccc--c---c---ccc--cc--cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 371 NMDSGPVATFQVH--EHLR--P---K---LCD--LY--ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 371 ~~~~~~~~~~~~~--~~~~--~---~---~~~--~~--~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
-. +.+....... +... . . +.. ++ .....-.|+.|..||||+.||+...+|.|.+|++.+-
T Consensus 188 L~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 188 LS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 64 4333221111 1100 0 0 010 11 1122334679999999999999999999999999875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-07 Score=84.37 Aligned_cols=301 Identities=11% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCC
Q 010206 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (515)
Q Consensus 46 ~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~ 125 (515)
.+..+++++.+|.|..+|..+++.. ....+.. .+.. .|..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~---------------~~~~---~p~v~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDE---------------RLSG---GVGAD 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCC---------------Cccc---ceEEc
Confidence 3567888888999999998887743 0011111 1110 11123
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.+..+|..+++.......... +.. .... .++ .+ +.+..++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~v-~~~-~v------------~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPLV-ANG-LV------------VVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCEE-ECC-EE------------EEECCCC
Confidence 45788888999999999999987765443211 100 1111 122 22 5556678
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCe-----EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI-----NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
.+..+| ..+.+. +..+ ......+ .+.... + ..++.+ .++.+..+|+++++...+.....+..
T Consensus 156 ~l~a~d--~~tG~~------~W~~-~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g- 223 (377)
T TIGR03300 156 RLTALD--AATGER------LWTY-SRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG- 223 (377)
T ss_pred eEEEEE--cCCCce------eeEE-ccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-
Confidence 888887 333221 1110 0000000 011111 2 355566 78899999998776543210000000
Q ss_pred cccCCc---e-EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 280 EDLTEV---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 280 ~~~~~~---i-~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
...... + .+..+. + ..++.++.+|.+..||..+++...+. .. ........ .+.
T Consensus 224 ~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~~W~~------~~------------~~~~~p~~--~~~ 280 (377)
T TIGR03300 224 RTELERLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRVLWKR------DA------------SSYQGPAV--DDN 280 (377)
T ss_pred CCchhhhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcEEEee------cc------------CCccCceE--eCC
Confidence 000000 0 111122 3 46777888999999999988754321 10 01111222 345
Q ss_pred EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.++ +|.+..+|..+ ++.+-......... ..+... .+..|++++.+|.|+++|..++ ++
T Consensus 281 ~vyv~~~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~ 342 (377)
T TIGR03300 281 RLYVTDADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDG-SF 342 (377)
T ss_pred EEEEECCCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCC-CE
Confidence 666655 59999999986 55443321111000 002222 4568889999999999999887 45
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..++.+..++..--...++ .|..++.||.+..
T Consensus 343 ~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 343 VARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYA 375 (377)
T ss_pred EEEEEcCCCccccCCEEECC-EEEEEeCCceEEE
Confidence 45666555433222122233 4667777877653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=94.31 Aligned_cols=184 Identities=17% Similarity=0.227 Sum_probs=129.3
Q ss_pred CeEEEEecCC---CCEEEEeCCCcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 236 HINSISNNSD---GETFISADDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.|-.+.|+|. ..++++-....-.+|++...... +.+ .+.+|...|+.+.|+|+.+..+++++.|-.+..|
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceee
Confidence 4566778764 33444446666778988654322 222 4578999999999999998999999999999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|++..... ++.+..- ...-..|+|+- ++..+|+...+.|++||++.+..++..+++|...+
T Consensus 143 d~rSp~~p---~ys~~~w------------~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~v--- 204 (1081)
T KOG0309|consen 143 DMRSPHRP---FYSTSSW------------RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSV--- 204 (1081)
T ss_pred eccCCCcc---eeeeecc------------cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceee---
Confidence 99875422 2222221 13457788986 66667766668999999999888999998865442
Q ss_pred cccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC
Q 010206 391 CDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
..+.|..- -..+.+.+.|++|++||................++..-.+.|-|.
T Consensus 205 ------------n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 205 ------------NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred ------------ehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 24555431 235778999999999998865444445555667787777877665
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=86.02 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=99.8
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---eEEEEe
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLID 312 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~~wd 312 (515)
+..+..++.+++++.+ .+....++++....+..++++. .......+++.|..+. .....+..-| .+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3445667888888888 6777767777654432222211 1112223444444443 3333333333 344444
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
...+. ...+-||.+.++.++|+||++++++++. ..|++-........-.-+.+|...+.
T Consensus 139 ~~~~~-----------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS--- 198 (390)
T KOG3914|consen 139 ADSGR-----------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS--- 198 (390)
T ss_pred ccccC-----------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee---
Confidence 33222 1225788899999999999999999986 99999877642222233456777644
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.- +++.|++||.|++|++||+.+++.+
T Consensus 199 ------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 ------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ------------eeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 56655 4566899999999999999999665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-08 Score=100.70 Aligned_cols=185 Identities=12% Similarity=0.160 Sum_probs=137.5
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..+-..|.++.-+|...+.++| .||.+++|....+.+.... . ......|+.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence 4455778888889999999998 8999999998766654322 1 1234788999999999 8999999999999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE---cC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~---~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
+|...... ... .+.|......+.|-. ..++++ ++ +.+.+||...+...-..-..|.+
T Consensus 2277 l~q~~pk~-----~~s------------~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTS------------WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ecccCCcc-----eec------------cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99986221 112 233556677777764 566663 35 99999997654333333356655
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
. ++.+++-|..+.|++|+.+|.|++||++.. +++++++. +. ...++++|+..|.
T Consensus 2338 g---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 G---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred C---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccc
Confidence 4 568999999999999999999999999865 45455544 33 5678999999999
Q ss_pred EEE
Q 010206 466 VRR 468 (515)
Q Consensus 466 v~l 468 (515)
+++
T Consensus 2392 ikI 2394 (2439)
T KOG1064|consen 2392 IKI 2394 (2439)
T ss_pred eEE
Confidence 999
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.6e-07 Score=74.15 Aligned_cols=232 Identities=9% Similarity=-0.022 Sum_probs=141.6
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
...+|+.| ..|...+|...+.+....+.+. |...|.-+.=..+...-+..++.|.++++.++..+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---- 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---- 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhcccccceeeccCCcceeEEEEecCccc----
Confidence 34467777 7899999999876654433322 22222111111111134566788889998888655321
Q ss_pred ceeeeccCCCcccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 324 KLFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
+..|.. .+.++++++|++++++-+| ..|..|.+...+.-+......... +.
T Consensus 152 --------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~-- 205 (344)
T KOG4532|consen 152 --------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DH-- 205 (344)
T ss_pred --------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CC--
Confidence 111212 2788999999999999766 999999998644333222111111 11
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeeccCCCceeeEEECCCCCe--eEeecCCCeEEEecCCCC
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVKGADN 474 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~v~l~~~~~~ 474 (515)
-++..|+.....+|++..||++.|||++....+. .+-..|...++.+.|++.|.. |...-.=+.+.+.+....
T Consensus 206 -gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 206 -GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred -ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 1378999999999999999999999998754332 223468899999999987653 332222344444333332
Q ss_pred CccccCCc----ccccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 475 SALDANGN----AFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 475 ~~~~~~~~----~~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
..-++... ...|. ..|..-.|+.++..+-++++..+.-|+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 22111111 11233 348888899988888888877776665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-06 Score=82.73 Aligned_cols=177 Identities=9% Similarity=0.024 Sum_probs=105.2
Q ss_pred ceEEEEEecCCCcEEEEEecC---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-
Q 010206 285 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 360 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~- 360 (515)
......|+|++...++..+.+ ..|.++|+.+++.. .+. ...+......|+|||+.|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~lt------------~~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KIA------------SSQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EEe------------cCCCcEEeeEECCCCCEEEEEE
Confidence 677899999993345544443 46888898877531 111 111345567899999877753
Q ss_pred c-C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CC--cEEEEecCCCCcc
Q 010206 361 D-Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE 434 (515)
Q Consensus 361 ~-~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg--~i~iw~~~~~~~~ 434 (515)
+ . ..|.++|+.. + ....+..+... .....|+|||+.|+-.+. .+ .|++.|+.++...
T Consensus 252 ~~~g~~~Iy~~dl~~-g-~~~~LT~~~~~---------------d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 252 APKGQPDIYLYDTNT-K-TLTQITNYPGI---------------DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ccCCCcEEEEEECCC-C-cEEEcccCCCc---------------cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 2 2 5777888764 3 33444333211 015689999998775553 33 6777888876443
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCC---------eEEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSG---------VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---------~v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
..+..+.. ...++|+|+.++..+... .+.++ ++.... .+. ........+|+|||+.|+
T Consensus 315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT-----~~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLT-----ANGVNQFPRFSSDGGSIM 383 (419)
T ss_pred eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECC-----CCCCcCCeEECCCCCEEE
Confidence 33332221 248999999887766542 34442 233221 111 112334689999999998
Q ss_pred EEc
Q 010206 504 CAA 506 (515)
Q Consensus 504 ~~~ 506 (515)
..+
T Consensus 384 f~~ 386 (419)
T PRK04043 384 FIK 386 (419)
T ss_pred EEE
Confidence 665
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=91.04 Aligned_cols=294 Identities=14% Similarity=0.185 Sum_probs=170.3
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|+..|.+++--.+.+-+++++.|.+|++|.+...... . ....+.-+++.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-------~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-------GTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-------ccceeeeEhhhcc---------
Confidence 46789999999987778888999999999999998644321 0 0112445677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.+|+++.|.. +- -..++.|+.|++||.--++........ |
T Consensus 785 ---k~i~~igfL~--~l--r~i~ScD~giHlWDPFigr~Laq~~da-------------------------p-------- 824 (1034)
T KOG4190|consen 785 ---KPIHDIGFLA--DL--RSIASCDGGIHLWDPFIGRLLAQMEDA-------------------------P-------- 824 (1034)
T ss_pred ---Ccccceeeee--cc--ceeeeccCcceeecccccchhHhhhcC-------------------------c--------
Confidence 8899999953 32 234567899999997655432211100 0
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~ 267 (515)
..+..+.|.|+. +-+...++++ ...+|+++|.+..+.
T Consensus 825 ----------------------------------------k~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 825 ----------------------------------------KEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ----------------------------------------ccCCCceeEecc-cCcchheeeeccchhhheeeecccccc
Confidence 001112233331 1244455554 588999999987664
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
..++. --.-.+...-+++++..+.| +.++.+-.+|.|.+.|.++|+.+.. |...+ .....
T Consensus 864 ~~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vINs----wrpme------------cdllq 923 (1034)
T KOG4190|consen 864 TCELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVINS----WRPME------------CDLLQ 923 (1034)
T ss_pred eeeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCceecc----CCccc------------chhhh
Confidence 43321 01223445678999999999 9999999999999999999986422 22111 11222
Q ss_pred EEEccCCCEEEE-EcCCeEEE-EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 348 IKFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 348 ~~~s~~~~~l~s-~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
++ .|..+.|+. +.+.++.+ |-... +......+..... .--...-|.-|+++...+.+.+
T Consensus 924 la-apsdq~L~~saldHslaVnWhald-gimh~q~kpppep-----------------ahflqsvgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 924 LA-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEP-----------------AHFLQSVGPSLVTAQNGNILGV 984 (1034)
T ss_pred hc-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcc-----------------hhhhhccCceeEEeccCcEEEE
Confidence 22 234445554 44566666 65442 2221111111110 0001113445666666667777
Q ss_pred EecCCCCcc---eeee--ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAE---STTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~---~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|.-...... +..+ +.-....++++..|-..-++.|+..|.|.+
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 742211000 0111 122344567888887777788888887776
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-07 Score=82.66 Aligned_cols=327 Identities=14% Similarity=0.162 Sum_probs=196.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.-|.+.|+-+.-+. .+++.+++.||.++.|.-..-. ...+...+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL----------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL----------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH-----------
Confidence 35888888877654 5699999999999999854311 112556677787
Q ss_pred cceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCcee-ecCCCccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY-MANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~g~~l~~~ 189 (515)
..|.+++- +.++..+.+.+. |..++++|+.+-.+....+....+. ...| ...|..+
T Consensus 54 -~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~--- 111 (558)
T KOG0882|consen 54 -GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKI--- 111 (558)
T ss_pred -HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCee---
Confidence 67888877 556767778777 9999999999876655444443331 0011 1111100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc-
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ- 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~- 267 (515)
..+.++.-.++.+.++| .... ..+...+..-|..+|..+.+++.+..+++. ..|.|..|..+..-+
T Consensus 112 -----s~IAVs~~~sg~i~VvD-----~~~d--~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 112 -----SLIAVSLFKSGKIFVVD-----GFGD--FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred -----eeEEeecccCCCcEEEC-----CcCC--cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 01124455667788777 1111 111222235688999999999999999998 699999999873111
Q ss_pred ccc--eecccC----ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec-cCCCcc-----
Q 010206 268 SFN--IVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ-EAPGTR----- 335 (515)
Q Consensus 268 ~~~--~~~~~~----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~----- 335 (515)
+.. .+.++. ..+...+....++.|+|++ ..+.+-+.|..|++++++++++........... ..+...
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~ 258 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMH 258 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccce
Confidence 111 011111 0122335667899999999 899999999999999999998754322211110 000000
Q ss_pred ----------ccccccc-cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCC------
Q 010206 336 ----------SFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS------ 398 (515)
Q Consensus 336 ----------~~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 398 (515)
.-+..|. ..-+.+.|...|++|+.|+-=-|++.++.+ +...+.+...+..+.....+|....
T Consensus 259 VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~ 337 (558)
T KOG0882|consen 259 VELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAA 337 (558)
T ss_pred eehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchh
Confidence 0011121 234567888899999999875689999986 5555444332211111111110000
Q ss_pred c---c-ceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 399 I---F-DKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 399 ~---~-~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+ . .--.+.+.+|..+++++-..+++++|
T Consensus 338 ~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 338 LEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 0 00023467777788888888888888
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-05 Score=68.56 Aligned_cols=146 Identities=11% Similarity=0.130 Sum_probs=87.7
Q ss_pred CCeEEEEecCCCCEEEEe-CC--------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 235 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
...+.+++.++|++.++. .. +.|..++.. ++ .. .+...-...+.|+|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~--------~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VT--------VVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EE--------EEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EE--------EEecCcccccceEECCcchheeeccccc
Confidence 457789999999977774 22 456667766 22 21 1122345578999999993344566778
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|..|++..........+.+... ....+....+++..+|++.++.-. +.|.++|.. ++.+..+....
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDF---------PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE----------SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-SS
T ss_pred ceeEEEeccccccceeeeeeEEEc---------CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCCC
Confidence 899999986433211111112110 111134778999999988777544 899999976 77777776552
Q ss_pred cccccccccccCCCccceeeEEEc-CCCCEEEE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLS-GDGGRVAT 416 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 416 (515)
.. +++++|. ++.+.|+.
T Consensus 225 ~~---------------~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 225 PR---------------PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SS---------------EEEEEEESTTSSEEEE
T ss_pred CC---------------EEEEEEECCCCCEEEE
Confidence 22 4589994 56565543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-05 Score=76.58 Aligned_cols=267 Identities=10% Similarity=0.048 Sum_probs=137.5
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.|..+|..+++........... .. .+ ..++..+ +.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~---------~~------~p--~v~~~~v------------~v~~~~g 115 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERL---------SG------GV--GADGGLV------------FVGTEKG 115 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCc---------cc------ce--EEcCCEE------------EEEcCCC
Confidence 458888899999999999999877665544211 00 11 1123333 6667778
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
.+..+| ..+.+ ...... -...+.+.-.- .+..++.+ .++.+..||.++++...+.....+ .+. ...
T Consensus 116 ~l~ald--~~tG~------~~W~~~--~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~-~~~ 182 (377)
T TIGR03300 116 EVIALD--AEDGK------ELWRAK--LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALT-LRG 182 (377)
T ss_pred EEEEEE--CCCCc------Eeeeec--cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-cee-ecC
Confidence 888777 32221 111110 01112111111 23345555 799999999988775443210000 000 000
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce-eEEEEccCCCEEEEEc-C
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFARNGRHILSRD-Y 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~s~~-~ 362 (515)
. .+.... + ..++.+..++.+..+|.++++...+.. +...... .. .. ....+ ....+ .+..++.++ +
T Consensus 183 ~-~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~--~~~~~g~--~~-~~-~~~~~~~~p~~--~~~~vy~~~~~ 250 (377)
T TIGR03300 183 S-ASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQR--VALPKGR--TE-LE-RLVDVDGDPVV--DGGQVYAVSYQ 250 (377)
T ss_pred C-CCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeec--cccCCCC--Cc-hh-hhhccCCccEE--ECCEEEEEEcC
Confidence 0 111122 2 356778889999999999987543211 0000000 00 00 00000 01111 234555544 5
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-C
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-S 441 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~ 441 (515)
+.+..||..+ ++.+-...... . .... .++..|+.++.||.++.+|..+++.+ ..... .
T Consensus 251 g~l~a~d~~t-G~~~W~~~~~~-~----------------~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~ 309 (377)
T TIGR03300 251 GRVAALDLRS-GRVLWKRDASS-Y----------------QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELK 309 (377)
T ss_pred CEEEEEECCC-CcEEEeeccCC-c----------------cCce--EeCCEEEEECCCCeEEEEECCCCcEE-Ecccccc
Confidence 9999999986 55443332110 0 0222 24667888889999999999887433 22211 1
Q ss_pred CCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 442 KNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
......... .+..++.++.+|.+.++
T Consensus 310 ~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 310 YRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 111122222 35688888999999883
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-08 Score=83.37 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=110.4
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.+.+|-+..|-+-|++++-+. .+. .++.|.++.|...+ +++..|+.+|.|..+|+|.+..- ..+
T Consensus 227 hfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~~- 290 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NGW- 290 (425)
T ss_pred eecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CCc-
Confidence 344566778888899877543 233 46778889999877 89999999999999999876211 000
Q ss_pred eccCCCccccccccccceeEEEEcc-CCCEEEEEc-CCeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccce
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
....--|.+.|+++..-. ++++|.+.+ +|+|++||++. .++ +..+.+|...-..+
T Consensus 291 -------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l------------ 350 (425)
T KOG2695|consen 291 -------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL------------ 350 (425)
T ss_pred -------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc------------
Confidence 011233667888888766 677777765 49999999986 555 78888886542211
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
-+-..+....++++++|...+||.++.+ .+..+++
T Consensus 351 -~~~v~~eeg~I~s~GdDcytRiWsl~~g-hLl~tip 385 (425)
T KOG2695|consen 351 -PAHVKEEEGSIFSVGDDCYTRIWSLDSG-HLLCTIP 385 (425)
T ss_pred -ccccccccceEEEccCeeEEEEEecccC-ceeeccC
Confidence 2455677788999999999999999988 4545544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-05 Score=65.01 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=88.2
Q ss_pred EEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccc
Q 010206 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 240 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
++.+.+|++||.-.|..|.+-..+..-... ..+...-+.....-+.++|+||+ .+||.+...|+|++||+....+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si---~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI---IGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchhe---eEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence 567789999988888888877665432111 01111111123345789999998 99999999999999999754332
Q ss_pred ccccceeeeccCCCccccccccccceeEEEEccCC-------CEEEEEcCCeEEEEEeeC----CCCCeeeEeeeccccc
Q 010206 320 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-------RHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRP 388 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~s~~~~~i~iwd~~~----~~~~~~~~~~~~~~~~ 388 (515)
. .... ..........|..+.|-+-. .+|+..-.|.++=|-+.. ..+...++.....
T Consensus 79 ~-----I~p~-----~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~--- 145 (282)
T PF15492_consen 79 V-----IPPA-----MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH--- 145 (282)
T ss_pred E-----cCcc-----cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc---
Confidence 1 1110 00111223567777776421 233333346676666532 1222223322111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
...+|.++.++|..++|+.|+.
T Consensus 146 ---------yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 146 ---------YPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred ---------CCCceeEEEEcCCCCEEEEecc
Confidence 1123669999999998877663
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-07 Score=73.76 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=89.0
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeC------CCcEEEEeCCCCCccccee
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISAD------DLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------d~~i~iwd~~~~~~~~~~~ 272 (515)
+.+..||.+.+.+ ... .. ...+.....|.+ -.+.+....++.+.++. -+..+.|+++..+...
T Consensus 105 ~~~~~dg~~~v~s--~~~---~~--~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~--- 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFS--TDK---DL--ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI--- 173 (319)
T ss_pred EecCCCceEEEEe--chH---HH--hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccc---
Confidence 7788888888776 221 10 011110011111 12233334555665543 3445566665333221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
+.. . ....|.+++-+|..++++++|+.||.+-+||.++.... ...+..|+.+|..+.|+|
T Consensus 174 ---~~~-~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 174 ---PSK-K-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred ---ccc-c-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccC
Confidence 111 1 12338999999987688999999999999999987432 234677889999999999
Q ss_pred -CCCEEEEEcC-CeEEEEEee
Q 010206 353 -NGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 353 -~~~~l~s~~~-~~i~iwd~~ 371 (515)
++..|++++. |.+.-||..
T Consensus 234 k~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred CCchheeEecCCCcEEEEcCC
Confidence 6778888765 999999986
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.7e-05 Score=66.18 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=107.4
Q ss_pred eEEEEec-CCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecC--------C
Q 010206 237 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 306 (515)
Q Consensus 237 v~~~~~~-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~d--------g 306 (515)
...+++. +++.++++.. +.+.++|+.+++.. .+... .... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~-~~~~~---~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADS-GGIAVVDPDTGKVT-VLADL---PDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEET-TCEEEEETTTTEEE-EEEEE---ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEEc-CceEEEecCCCcEE-EEeec---cCCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5667777 5654444444 44556688766432 12111 0011 34567899999999 776665543 4
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCee---eEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~---~~~ 381 (515)
.+..++.. ++.. .... .-...+.++|+|+++.|+..+ . +.|..+++......+. .+.
T Consensus 116 ~v~~~~~~-~~~~----~~~~-------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVAD-------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEEE----EEEE-------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeEE----EEec-------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 56666665 3311 1111 113468999999999887654 3 8999999975343222 121
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE-CCCCCeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSRP 458 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~ 458 (515)
....... ..-.++++.+|++.++.-..+.|.+++.+ + .++..+......+++++| .++.+.|.
T Consensus 178 ~~~~~~g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 178 DFPGGPG------------YPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp E-SSSSC------------EEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred EcCCCCc------------CCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 1111100 01269999999988887788999999987 4 455555555557888888 45655443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-06 Score=79.26 Aligned_cols=258 Identities=14% Similarity=0.157 Sum_probs=158.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
|...-.++.|+|.| +||.|+.. .|.|-|..+-+ .+..+.-|. .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s 56 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------S 56 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------c
Confidence 33446789999988 78888754 68888876544 335556666 7
Q ss_pred eeEEEEEeecCC----------CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 114 KINKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 114 ~v~~l~~~~~~~----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
.|+.+.|.|-+- .-.++++...|.|.+||...+.....
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------- 104 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------- 104 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------------------------------
Confidence 799999976321 12345555667788887765432111
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCC-EEEEe-CCCcEE
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRIN 258 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~s~-~d~~i~ 258 (515)
+..|..++..++|-+ +.+ .|++- ...++.
T Consensus 105 ----------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 105 ----------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred ----------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEE
Confidence 244556667777754 443 34443 688999
Q ss_pred EEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc----
Q 010206 259 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---- 334 (515)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~---- 334 (515)
+|+..+++... +.........|+.+.|-+.+.+..-+..|.+.+-+.-.........+.+.....-..
T Consensus 139 LwntdtG~k~W--------k~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 139 LWNTDTGEKFW--------KYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred EEEccCCceee--------ccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 99999887654 223334556779999977677777788888877766443332222222222111000
Q ss_pred -cccccc--ccc---------ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 335 -RSFFTE--IIA---------SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 335 -~~~~~~--~~~---------~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
..+..+ ++. ....++|+|.-+.++-... ..+.++|++. ..++.+.....+...
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak------------- 276 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK------------- 276 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc-------------
Confidence 000000 000 1234567886554444443 6899999986 777777766554322
Q ss_pred eeeEEEcCCCC--EEEEecCCCcEEEEecCC
Q 010206 402 KFECCLSGDGG--RVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 402 v~~~~~s~~~~--~l~s~s~dg~i~iw~~~~ 430 (515)
-+.+-|+++ .|+..-.||.+.+|-.+.
T Consensus 277 --fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 --FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred --eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 466777655 688999999999998765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-07 Score=73.72 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..|.+++-+|..+.++. | +||.+.+||.+....+. ..+..|+.+|..+-|+|..+..|++++.||.+.-||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 34899999997665554 5 89999999998764333 256789999999999999889999999999999999
Q ss_pred cCc
Q 010206 313 MRQ 315 (515)
Q Consensus 313 ~~~ 315 (515)
-.+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 874
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-08 Score=93.23 Aligned_cols=218 Identities=14% Similarity=0.252 Sum_probs=137.2
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|....+|++|+-+.+.|++|+..|.|++|++.+|... ....+|.
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~----------- 1143 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ----------- 1143 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc-----------
Confidence 467789999999999999999999999999999988743 4567787
Q ss_pred cceeEEEEEeecCCCcEEEeeeCC-C-eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTND-K-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|+.+.- +.+|..+++.+.- . -..+|++.+--
T Consensus 1144 -SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~~------------------------------------------ 1178 (1516)
T KOG1832|consen 1144 -SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASSTG------------------------------------------ 1178 (1516)
T ss_pred -cccccccc--cCCcceeeeeccccCchHHHhcccccc------------------------------------------
Confidence 77888876 5667677665432 2 45677765410
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.++..| ..-.++.|+...+.-+.| ......+||+.+...+
T Consensus 1179 ----------------------------------~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1179 ----------------------------------GPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ----------------------------------Cccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 011111 122345565543333334 4456788999988766
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
...+.- ..+.+..-.+..|+|++ .+++ .|| .+||++..+.+ +.|+.-. .-..=
T Consensus 1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~aI----h~FD~ft-------------~~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEAI----HRFDQFT-------------DYGGG 1272 (1516)
T ss_pred HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHHH----hhhhhhe-------------ecccc
Confidence 442210 01112222678899998 6766 566 47999886543 2233211 11223
Q ss_pred EEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 349 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 349 ~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
.|+|.|..++.-+. |||+++ .+.+.....-.. ..+.|+..|..++.
T Consensus 1273 ~FHP~g~eVIINSE----IwD~RT-F~lLh~VP~Ldq-----------------c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINSE----IWDMRT-FKLLHSVPSLDQ-----------------CAVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeech----hhhhHH-HHHHhcCccccc-----------------eEEEeccCccchhh
Confidence 58999998888664 999997 555554433322 16788888876553
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-05 Score=65.77 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=43.2
Q ss_pred cccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 341 IIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
..+.+-+|++++++.++++.+ . +.+.+||..+ ++.+......+.. .++-.+++ +++|.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l~D~c-----------------Gva~~~~~-f~~ssG 275 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPLPDAC-----------------GVAPTDDG-FLVSSG 275 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccccCcee-----------------eeeecCCc-eEEeCC
Confidence 346799999999999888765 3 9999999986 7766665544422 56666666 666555
Q ss_pred C
Q 010206 419 Y 419 (515)
Q Consensus 419 ~ 419 (515)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 4
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=75.87 Aligned_cols=246 Identities=18% Similarity=0.187 Sum_probs=138.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-C-CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-cEEEEE-ecCC
Q 010206 231 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYS-SSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-~~l~~~-~~dg 306 (515)
..|-..|.+++.+.++-++.+. + |..++++|++.-... +.+ .+.-..+.+. ...+|... ..++.+ -.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmi-nmi-----KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMI-NMI-----KLVDLPGFAE-WVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchh-hhc-----ccccCCCceE-EecCCCCeeeeEEeecccCC
Confidence 4677888899999999999996 5 999999999865432 111 1111122222 22233211 134433 3478
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
.|.++|-....... ..+-.-|.++|.++.+.+-+..+++.+. |.|.-|.... +.+.......
T Consensus 123 ~i~VvD~~~d~~q~--------------~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~---~~qfPr~~l~ 185 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQD--------------GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG---PFQFPRTNLN 185 (558)
T ss_pred CcEEECCcCCcCcc--------------ceecccccCceEEEEeeccccceeeccccceeEeecCCC---cccCcccccc
Confidence 89999976543211 0112346789999999999999999876 9999998862 1111111000
Q ss_pred ccccc-cccccC-CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 386 LRPKL-CDLYEN-DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 386 ~~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
...+. ..+|.. ++-.-..++.|+|+|..+.+-+.|..|++++.+++ .+.+.+......-... |..++-+++
T Consensus 186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q---~ks~y~l~~--- 258 (558)
T KOG0882|consen 186 FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQ---PKSPYGLMH--- 258 (558)
T ss_pred ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhc---cccccccce---
Confidence 00000 001110 11111248999999999999999999999999988 4444444322211111 111111110
Q ss_pred CeEEEecCCCCCccccCCcccccc-CCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 464 GVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 464 ~~v~l~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+.+ +.+.. ...+.-.+. ..-+.+.|...+++|.-++-=|+.+++
T Consensus 259 --Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 259 --VEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred --eeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 111 01100 000111122 234678899999999999888887775
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-07 Score=55.21 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
..+|.++|++++|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 458999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00012 Score=64.03 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=112.3
Q ss_pred EecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec----------
Q 010206 241 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---------- 304 (515)
Q Consensus 241 ~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~---------- 304 (515)
.|++||++|.+. . .|.|-|||....-... ..+..|.-....+.+.||+ ..|+.+..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri-------~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRI-------GEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGR 128 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEE-------eEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCc
Confidence 589999999986 2 5889999998332221 2455566667888999998 55555421
Q ss_pred --------CCeEEEEecCcccccccccceeeeccCCCccccc--cccccceeEEEEccCCCEEEEEcC-C-------eEE
Q 010206 305 --------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF--TEIIASISDIKFARNGRHILSRDY-M-------TLK 366 (515)
Q Consensus 305 --------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~-~-------~i~ 366 (515)
+..+.+-|.++++++.+ . .+ .-|.-.|.-+++.++|..++..-+ | -|-
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q-------~-------~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQ-------V-------ELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred eecChhhcCCceEEEecCCCceeee-------e-------ecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence 12233344444443221 1 12 225567999999999988887532 2 223
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCce
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPM 445 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v 445 (515)
+++. +..+..+.........+ . .. +-++++++++.+++..+ ..|.+.+||..++..+ .. .....+
T Consensus 195 ~~~~---g~~~~~~~~p~~~~~~l-~----~Y---~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~-~~--~~l~D~ 260 (305)
T PF07433_consen 195 LHRR---GGALRLLPAPEEQWRRL-N----GY---IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL-GS--VPLPDA 260 (305)
T ss_pred EEcC---CCcceeccCChHHHHhh-C----Cc---eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe-ec--cccCce
Confidence 3332 23333333222111000 0 11 33899999999886555 7789999999988322 11 223345
Q ss_pred eeEEECCCCCeeEeecCCCeEEE
Q 010206 446 RRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 446 ~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..++..+++ +++|.+....+.+
T Consensus 261 cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 261 CGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred eeeeecCCc-eEEeCCCccEEEc
Confidence 667777776 6666665555554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=74.65 Aligned_cols=150 Identities=7% Similarity=0.033 Sum_probs=101.1
Q ss_pred eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC---CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE---Ee
Q 010206 345 ISDIKFARNGRHILSRDY-MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA---TG 417 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---s~ 417 (515)
...+..++.++++|.+.. ....++++....+ +.......... +.+.|-.+...+. ..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~----------------~ai~~~~~~~sv~v~dka 128 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP----------------TAISFIREDTSVLVADKA 128 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc----------------ceeeeeeccceEEEEeec
Confidence 445567788999998865 6767777764232 12222211111 1444544444433 34
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
++...+.+|....+ ....+-+|-+-+..++++||.++++++..|..||+ .+-+....+..-.++|+..|..++.-+
T Consensus 129 gD~~~~di~s~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRv--s~ypa~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 129 GDVYSFDILSADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRV--SRYPATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred CCceeeeeeccccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEE--EecCcccchhhhccccHhheeeeeecc
Confidence 45566667776643 22456699999999999999999999999999999 333332233444568999999999988
Q ss_pred CCCEEEEEcCCcEEEEe
Q 010206 498 SENSIACAASNSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~~ 514 (515)
+..++-.++++.+++|+
T Consensus 205 ~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred CceeeecCCCCcEEEEe
Confidence 87766677788899996
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-07 Score=77.39 Aligned_cols=162 Identities=10% Similarity=0.123 Sum_probs=106.2
Q ss_pred EEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
+|+-..-+-+ ++.+.+..+-+-|++++-...... .+.|+ ++.|...+..+
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~s----------ksDVf-------AlQf~~s~nLv------------ 267 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQS----------KSDVF-------ALQFAGSDNLV------------ 267 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeeccccccccc----------chhHH-------HHHhcccCCee------------
Confidence 5543333334 556667788888888875433321 34444 55555555555
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
+.|+..|.|-..|+ ....... +.+... ..|...|+++..-. ++++|+++ -+|+|.+||.+.-+....+.
T Consensus 268 ~~GcRngeI~~iDL--R~rnqG~-~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~---- 338 (425)
T KOG2695|consen 268 FNGCRNGEIFVIDL--RCRNQGN-GWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM---- 338 (425)
T ss_pred EecccCCcEEEEEe--eecccCC-CcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccccee----
Confidence 99999999999994 3321111 122222 36889999998766 67777777 69999999998766533332
Q ss_pred ccccccCCceEEEE--EecCCCcEEEEEecCCeEEEEecCccccccc
Q 010206 277 ANMEDLTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 321 (515)
Q Consensus 277 ~~~~~~~~~i~~i~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 321 (515)
++++|...-.-+- ..+.. ..+++++.|...|+|.++.+.+..+
T Consensus 339 -qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 339 -QYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred -eeeccccccccccccccccc-ceEEEccCeeEEEEEecccCceeec
Confidence 6677754433332 34555 6888899999999999999887543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=5e-05 Score=76.60 Aligned_cols=240 Identities=14% Similarity=0.114 Sum_probs=133.6
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
...|.++.|..+...++.+ .+|.|.+-|..+.... ....-...|.+++|+||+ ..++..+.++++.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e---------ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE---------IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee---------eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEe
Confidence 3689999999999888888 8999999988765432 112246789999999998 8888888888776644
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
- +...+.. +.++.... -.+..-.+-|-... .=+-|+.|+....+.....+.......+..
T Consensus 138 ~-~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrke-Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~------- 197 (1265)
T KOG1920|consen 138 K-DFEPIAE--KPLDADDE---------RKSKFVNVGWGRKE-TQFRGSEGRQAARQKIEKEKALEQIEQDDH------- 197 (1265)
T ss_pred c-cccchhc--cccccccc---------cccccceecccccc-eeeecchhhhcccccccccccccchhhccC-------
Confidence 2 2222211 00000000 00112223332111 111122222222111110110000011111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEe-----cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec---CCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATG-----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS---LSG 464 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~-----s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~ 464 (515)
-+++.|-.||+++|+. ..-..|++||.+ + .+..+-+....--.+++|-|.|..+++-. .|+
T Consensus 198 ---------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 198 ---------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ---------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 1379999999999873 233799999987 3 34333333334445889999999888763 345
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE---EcCCc-EEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~---~~~~~-~~i~~ 514 (515)
.|.+++-+-+...++......-...+..++|+.++..||+ ...+. +.+|.
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred cEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 5666332222221222211112334899999999999997 44444 88885
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=52.76 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=32.3
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+.+|...|++++|+|++ .+|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 678899999999999998 9999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=64.24 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=78.0
Q ss_pred EEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 249 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 249 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
++...++.++.+|..+++...+..... .+... ..........+ ..++.+..++.|..+|+++|+...+. ..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~~----~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWKY----PV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEEE----ES
T ss_pred ccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEEe----ec
Confidence 333367788888888777655421000 00011 11222222225 67888888999999999999865431 11
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcCCe-EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
........ +. ....+..-....++..+++..++. +.+ |+.+ ++.+ +...... . ....
T Consensus 151 ~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~--w~~~~~~---------------~-~~~~ 208 (238)
T PF13360_consen 151 GEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKL--WSKPISG---------------I-YSLP 208 (238)
T ss_dssp STT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEE--EEECSS----------------E-CECE
T ss_pred CCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEE--EEecCCC---------------c-cCCc
Confidence 11000000 00 001122222223453333444554 555 8886 4422 2211111 0 1224
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
..++..|+.++.++.|..||+++++
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCC
Confidence 5677888888899999999999984
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=76.54 Aligned_cols=192 Identities=14% Similarity=0.158 Sum_probs=120.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+-..+.++|++++ +++|+-|+-+|.|++++...... ..-.|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------------~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------------TNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------------cccccc-----------
Confidence 4456788999987 67999999999999999754321 011121
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.. ..+|.++++|+.||+|.|-.+.+.+......+
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df------------------------------------- 111 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF------------------------------------- 111 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEec-------------------------------------
Confidence 11 34688999999999999988776653332222
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-----CCEEEEe-CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~-~d~~i~iwd~~~~ 265 (515)
..++.+++++|+ .+.+++| .-| +.++.-+-.
T Consensus 112 ------------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl 148 (846)
T KOG2066|consen 112 ------------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL 148 (846)
T ss_pred ------------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh
Confidence 245677888886 5567776 455 777654322
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+.... ..+....++|.++.|. | +++|.++.+| |++||+.+++.+......-. .+. .. .--
T Consensus 149 gnk~~------v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~~---~~R-~e------~fp 208 (846)
T KOG2066|consen 149 GNKDS------VVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ---SVR-PE------LFP 208 (846)
T ss_pred cCccc------eeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCCC---CCC-cc------cCC
Confidence 22211 1344567899999997 3 6888887776 79999988765432111100 000 00 123
Q ss_pred eEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 346 SDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
..+.|.++.+ |+.|-..+|+|..++
T Consensus 209 phl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 PHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred CceEecCCCe-EEEecCCeEEEEEEe
Confidence 4577876654 444433488888887
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.1e-07 Score=86.59 Aligned_cols=191 Identities=14% Similarity=0.182 Sum_probs=127.4
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+....++++|+ .+.++|++|+..|.|+++++.+|.....
T Consensus 1100 ~~~~fTc~afs--~~~~hL~vG~~~Geik~~nv~sG~~e~s--------------------------------------- 1138 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GGTNHLAVGSHAGEIKIFNVSSGSMEES--------------------------------------- 1138 (1516)
T ss_pred cccceeeEEee--cCCceEEeeeccceEEEEEccCcccccc---------------------------------------
Confidence 34789999994 5567999999999999999988752111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~ 267 (515)
...|...|+-+.-+.+|..+++. +.--..+|++.....
T Consensus 1139 ---------------------------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1139 ---------------------------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred ---------------------------------------ccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence 24677888888888888888775 234678899875322
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... + -..-.++.|+... ..-+.|+......+||+.++..+.+........ ...-++
T Consensus 1180 ~~H-------s----f~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~------------~y~~n~ 1235 (1516)
T KOG1832|consen 1180 PRH-------S----FDEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTS------------SYSNNL 1235 (1516)
T ss_pred ccc-------c----ccccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhh------------hhhccc
Confidence 211 1 2334678898765 455556666788999999987665432211111 112367
Q ss_pred EEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 348 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
..|+|+..+++-- | .+||++. .+.+..|..-... ..-.|+|.|..++..+. |||
T Consensus 1236 a~FsP~D~LIlnd--G--vLWDvR~-~~aIh~FD~ft~~----------------~~G~FHP~g~eVIINSE-----IwD 1289 (1516)
T KOG1832|consen 1236 AHFSPCDTLILND--G--VLWDVRI-PEAIHRFDQFTDY----------------GGGGFHPSGNEVIINSE-----IWD 1289 (1516)
T ss_pred cccCCCcceEeeC--c--eeeeecc-HHHHhhhhhheec----------------ccccccCCCceEEeech-----hhh
Confidence 8899988777642 2 5899986 4545444322211 14579999999888664 899
Q ss_pred cCCC
Q 010206 428 CSEG 431 (515)
Q Consensus 428 ~~~~ 431 (515)
+++-
T Consensus 1290 ~RTF 1293 (1516)
T KOG1832|consen 1290 MRTF 1293 (1516)
T ss_pred hHHH
Confidence 9986
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0011 Score=67.28 Aligned_cols=222 Identities=13% Similarity=0.157 Sum_probs=128.1
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.|.++.|-.+++.++.+...|.|.+-|..+.... ..+. ++..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~-----------vd~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGN-----------VDNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeee-----------ccCce
Confidence 57899999999998999999999988887665431 1121 12679
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEcc----CCeeEE-----------------EeeccCCcccCCCC-----CCcc-
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQ----EKKVKK-----------------VFDWNVHPEKAAGN-----GPIF- 168 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~-----------------~~~~~~~~~~~~~~-----~~v~- 168 (515)
.+++| ++|++.++..+..+++.+-+-. ..+... ...++......... ....
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~ 190 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE 190 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccccc
Confidence 99999 4566788888888887765421 111110 00011000000000 0000
Q ss_pred --CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 169 --GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 169 --~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
.....-+++.|.-||++..+... ........|++|| .++...... ....+.=.+++|-|.|
T Consensus 191 ~~~~~~~~~~IsWRgDg~~fAVs~~-------~~~~~~RkirV~d-----rEg~Lns~s-----e~~~~l~~~LsWkPsg 253 (1265)
T KOG1920|consen 191 QIEQDDHKTSISWRGDGEYFAVSFV-------ESETGTRKIRVYD-----REGALNSTS-----EPVEGLQHSLSWKPSG 253 (1265)
T ss_pred chhhccCCceEEEccCCcEEEEEEE-------eccCCceeEEEec-----ccchhhccc-----CcccccccceeecCCC
Confidence 01222235778888877632211 1133337999998 332211111 1112333579999999
Q ss_pred CEEEEe----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE---EecCCeEEEEecCcccc
Q 010206 247 ETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY---SSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 247 ~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~---~~~dg~i~~wd~~~~~~ 318 (515)
.++++- +|+.|.++..+.-..- .+ .+ .+......+..++|+.++ .+|+. ......|++|-+.+-.-
T Consensus 254 s~iA~iq~~~sd~~IvffErNGL~hg-~f-~l---~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 254 SLIAAIQCKTSDSDIVFFERNGLRHG-EF-VL---PFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred CeEeeeeecCCCCcEEEEecCCcccc-cc-cc---CCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeEE
Confidence 999983 4778999986532211 10 00 122233448999999998 78887 55566699999877543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00032 Score=68.42 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=80.4
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEe--CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWN--LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
..++.+++.+.+-+.+++| .+|.|..+. +...+.... .-.....++|+.+++..++ ..++-...-..|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~------~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ------DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce------eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 4678899999999999999 999999884 221111110 0112347889999999888 44233344457899
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEe
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~ 381 (515)
|.+.... .. .+ ++..|..++.|..+++....++.+....+.+||... .++...+.
T Consensus 198 y~l~gr~-p~--~~------------~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~-~~~cfaf~ 252 (933)
T KOG2114|consen 198 YSLSGRT-PS--LK------------VLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG-RGPCFAFE 252 (933)
T ss_pred EEecCCC-cc--ee------------eeccCCccceeeecCCCCccEEEecCceEEEEcCCC-cceeeeec
Confidence 9987432 10 11 133444678999998755545555556899999873 44444444
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0014 Score=63.29 Aligned_cols=107 Identities=8% Similarity=0.074 Sum_probs=69.1
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCe-------eeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGPV-------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
....+.++|||+++++++. .++.|.|+.+....+ ..+...... .-.+ ...+|+++|+..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--------GlGP----LHTaFDg~G~ay 389 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--------GLGP----LHTAFDGRGNAY 389 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--------CCCc----ceEEECCCCCEE
Confidence 4678999999999998754 999999998622110 111111100 0011 157899999988
Q ss_pred EEecCCCcEEEEecCCC---------CcceeeeccCCCceeeE-----EECCCCCeeEeecC
Q 010206 415 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQ-----VQTPSRPSRPLGSL 462 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~~ 462 (515)
.|-.-|..|-.|++... ...+..+..|..+-.-. .-.|+|+||++.+.
T Consensus 390 tslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 390 TTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 88889999999999861 12334455555444322 23689999988754
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00029 Score=65.67 Aligned_cols=281 Identities=15% Similarity=0.123 Sum_probs=133.6
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccC--ccccCcccc---------cc---cc------cCCccceeeeec
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY---SM------SRHPEFRYKTEF 96 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~--~~~~~~~~~---------~~---~~------~~~~~~~~~~~~ 96 (515)
.|+.+.|+++.-.||+|...|.|.||.+...+..+ .....++.. .. ++ .....+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999987765432 000011000 00 00 000111111222
Q ss_pred ccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
+.. .+.|++++.+ . =.++++|..+|.+.|.|++...+........+.........+. .
T Consensus 83 ~~~------------~g~vtal~~S--~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAK------------QGPVTALKNS--D-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---------------S-SEEEEEE---B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred ecc------------CCcEeEEecC--C-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 222 3889999994 2 3489999999999999999888776644443111111112222 2
Q ss_pred ceee-----cCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEE-ecCC-----
Q 010206 177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD----- 245 (515)
Q Consensus 177 ~~~~-----~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~----- 245 (515)
+.|. .|+.. .-.++.|...|.+.+|.| +-...+.......... ..+...|..+. ++.+
T Consensus 141 ieF~vm~~~~D~yS---------Si~L~vGTn~G~v~~fkI-lp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a 209 (395)
T PF08596_consen 141 IEFSVMTLGGDGYS---------SICLLVGTNSGNVLTFKI-LPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESA 209 (395)
T ss_dssp EEEEEEE-TTSSSE---------EEEEEEEETTSEEEEEEE-EE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-
T ss_pred EEEEEEecCCCccc---------ceEEEEEeCCCCEEEEEE-ecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcc
Confidence 3333 12210 012277788899998884 2222222222222221 24555555554 3221
Q ss_pred ----------------CCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-----cCCCcEEEEEec
Q 010206 246 ----------------GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSS 304 (515)
Q Consensus 246 ----------------~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-----p~~~~~l~~~~~ 304 (515)
..+++.+.+..++++...+.+...+.+ ........+.+- ..+ ..|++-..
T Consensus 210 ~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--------~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~ 280 (395)
T PF08596_consen 210 LATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--------DDPFLCSSASVVPTISRNGG-YCLVCLFN 280 (395)
T ss_dssp B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEET
T ss_pred cCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--------ccccccceEEEEeecccCCc-eEEEEEEC
Confidence 124555578889999887666543321 111122233342 244 68888899
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+|.|++|.+...+.+.. ...+. ......+....++++|..++-.+...+.++.+-
T Consensus 281 ~G~i~i~SLP~Lkei~~----~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKS----VSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp TSEEEEEETTT--EEEE----EE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred CCcEEEEECCCchHhhc----ccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 99999999987654321 11111 011134556778899998776554455544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00082 Score=63.93 Aligned_cols=258 Identities=10% Similarity=0.074 Sum_probs=127.4
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..++.++.++.+..+|.++++.......... +.. +... .++. + +.+..++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~s------sP~v-~~~~-v------------~v~~~~g 170 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE---------ALS------RPVV-SDGL-V------------LVHTSNG 170 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc---------eec------CCEE-ECCE-E------------EEECCCC
Confidence 34778888899999999999987766554311 100 1111 1222 2 4455566
Q ss_pred cEEeeeeeecccccccccceeeeeec--------cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAH--------AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
.+..+| ..+.+. ...+.. +...++ .. ++ .++.+ .++.+..+|..+++...+.....+
T Consensus 171 ~l~ald--~~tG~~------~W~~~~~~~~~~~~~~~sP~----v~-~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 171 MLQALN--ESDGAV------KWTVNLDVPSLTLRGESAPA----TA-FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred EEEEEE--ccCCCE------eeeecCCCCcccccCCCCCE----EE-CC-EEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 666666 222211 111100 001111 11 23 34444 788898889887765432110000
Q ss_pred ccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
.. .........+..+| .+ ..++.++.+|.+..+|..+++...+.. + .....+.. .+
T Consensus 237 ~~-~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~ald~~tG~~~W~~~--~----------------~~~~~~~~--~~ 294 (394)
T PRK11138 237 TG-ATEIDRLVDVDTTPVVVG-GVVYALAYNGNLVALDLRSGQIVWKRE--Y----------------GSVNDFAV--DG 294 (394)
T ss_pred CC-ccchhcccccCCCcEEEC-CEEEEEEcCCeEEEEECCCCCEEEeec--C----------------CCccCcEE--EC
Confidence 00 00000001111111 13 356667789999999999987543210 0 01111222 34
Q ss_pred CEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 355 RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 355 ~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
..++.++ ++.+..+|..+ ++.+-......... ..+... .+.+|+.++.||.|+..|..+++
T Consensus 295 ~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~~~--------------~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~- 356 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRG-GVELWSQSDLLHRL--------------LTAPVL--YNGYLVVGDSEGYLHWINREDGR- 356 (394)
T ss_pred CEEEEEcCCCeEEEEECCC-CcEEEcccccCCCc--------------ccCCEE--ECCEEEEEeCCCEEEEEECCCCC-
Confidence 4555544 58999999876 54322211100000 001222 24567888999999999999884
Q ss_pred ceeeeccCCCcee-eEEECCCCCeeEeecCCCeEEE
Q 010206 434 ESTTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 434 ~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+...+.....+. ...+ .+..|..++.||.+..
T Consensus 357 ~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 357 FVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYA 390 (394)
T ss_pred EEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEE
Confidence 4333333222221 1122 2346677777877665
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00035 Score=65.56 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=62.4
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
-.....|.+.+++|+.+.|+.| .||+|.+||...+... +....-.++.++|+|+| .++++|+..|.+.
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~----------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ 324 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL----------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQ 324 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee----------eeeecccceEEEEcCCC-cEEEEEcCCceEE
Confidence 3566789999999999999998 9999999998755322 12234557899999999 8999999999999
Q ss_pred EEecCccc
Q 010206 310 LIDMRQSA 317 (515)
Q Consensus 310 ~wd~~~~~ 317 (515)
+||+.-..
T Consensus 325 ~FD~ALsp 332 (545)
T PF11768_consen 325 CFDMALSP 332 (545)
T ss_pred EEEeecCc
Confidence 99987654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-06 Score=79.79 Aligned_cols=211 Identities=15% Similarity=0.211 Sum_probs=124.0
Q ss_pred cccceEEEEECCC--CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 34 EVDIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 34 h~~~v~~v~~s~~--g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
....+.|+++.-+ ..++++|..+|.|.+-.+...... -.....+|.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------------s~E~tp~~a----------- 102 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------------SAEVTPGYA----------- 102 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------------cceeccccc-----------
Confidence 3456788887664 458999999999988876533210 001112233
Q ss_pred cceeEEEEEeecCCCcEEEee----eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 112 EEKINKIRWCQSANSALYLLS----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
...++++|++- |.+.|++| -.|..+.|||+.++-...... ..
T Consensus 103 -r~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-----------------------~~--------- 148 (783)
T KOG1008|consen 103 -RPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-----------------------PL--------- 148 (783)
T ss_pred -ccccccccccc-cHHHHHhhhhhhcccCCccceecccccCCCccc-----------------------cc---------
Confidence 67899999753 44567776 346789999988753211000 00
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+++ +......+++|..+.+++.+| ....+.++|++...
T Consensus 149 -----------fs~------------------------------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~ 187 (783)
T KOG1008|consen 149 -----------FSS------------------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL 187 (783)
T ss_pred -----------ccc------------------------------ccccCccccccccCcchhhcccccchhhhhhhhhhh
Confidence 100 011233478888889999999 78899999998432
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe-cCcccccccccceeeeccCCCccccccccccce
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.... .-.+..+..+...|-.+.++++- .||.|.+|| .++-+.. .......+.+.+ ..+
T Consensus 188 ~~~~---------svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienp---l~~i~~~~N~~~--------~~l 246 (783)
T KOG1008|consen 188 DSVS---------SVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENP---LQIILRNENKKP--------KQL 246 (783)
T ss_pred hhhh---------hhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccH---HHHHhhCCCCcc--------cce
Confidence 2211 11233466777888433676654 499999999 3332211 111111111101 248
Q ss_pred eEEEEccCCC-EEEEE-cC-CeEEEEEeeC
Q 010206 346 SDIKFARNGR-HILSR-DY-MTLKLWDINM 372 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~-~~-~~i~iwd~~~ 372 (515)
..++|+|... .+++. -+ ++|+++|+..
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8899999433 33333 34 9999999864
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.2e-07 Score=83.08 Aligned_cols=194 Identities=13% Similarity=0.127 Sum_probs=126.1
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-C----CCcEEEEeCCCCCc-c
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQ-S 268 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~----d~~i~iwd~~~~~~-~ 268 (515)
.+++.|..+|.|-+-. +...... ...+..++....++++|++ |...||+| + |..+.|||+.+.-. +
T Consensus 71 cIlavG~atG~I~l~s--~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP 143 (783)
T KOG1008|consen 71 CILAVGSATGNISLLS--VRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP 143 (783)
T ss_pred hhhhhccccCceEEee--cCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence 3458888889998766 3322221 2334577888999999988 67788887 3 78899999986522 1
Q ss_pred cceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 269 FNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 269 ~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.+. ..+.+ ......+++|..+. +++.+|...+.+.++|+|....... .+ .+..+..
T Consensus 144 ke~-----~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~---sv--------------nTk~vqG 200 (783)
T KOG1008|consen 144 KES-----PLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVS---SV--------------NTKYVQG 200 (783)
T ss_pred ccc-----cccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhh---hh--------------hhhhccc
Confidence 111 12222 33445688999776 8999999999999999985432111 00 1134677
Q ss_pred EEEcc-CCCEEEEEcCCeEEEEE-eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEec-CCCcE
Q 010206 348 IKFAR-NGRHILSRDYMTLKLWD-INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLF 423 (515)
Q Consensus 348 ~~~s~-~~~~l~s~~~~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s-~dg~i 423 (515)
+.++| .+.++++-.+|.|.+|| .++-..++..+.......+ ..++.++|.|... .+++.+ +.++|
T Consensus 201 ~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~-----------~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 201 ITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP-----------KQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred ceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc-----------cceeeEEeccCCcchhhhhccCcceE
Confidence 88888 78899998899999999 4433444444332222111 1245899999643 345554 55789
Q ss_pred EEEecCC
Q 010206 424 RVFGCSE 430 (515)
Q Consensus 424 ~iw~~~~ 430 (515)
+++++..
T Consensus 270 rlydi~~ 276 (783)
T KOG1008|consen 270 RLYDICV 276 (783)
T ss_pred EEecccc
Confidence 9999864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=69.85 Aligned_cols=179 Identities=16% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
.+++.|+..|.+.+.+ .++.. .. ...|... ..+|.++++| .||+|.|-.+-+.+....
T Consensus 50 ~~~~~GtH~g~v~~~~-----~~~~~----~~--~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~---- 108 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTT-----CQGNP----KT--NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ---- 108 (846)
T ss_pred ceeeeccccceEEEEe-----cCCcc----cc--ccccccc------ccCCceEEEecCCCcEEEeeccCCcccee----
Confidence 4458888999999877 11110 00 1122222 5689999999 899999998877665432
Q ss_pred cCccccccCCceEEEEEecC----CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 275 KPANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
....-++.+++++|+ ..+.+++|+..| +.++.-+-...... . .+....++|.++.|
T Consensus 109 -----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~----v----------~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 109 -----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS----V----------VLSEGEGPIHSIKW 168 (846)
T ss_pred -----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc----e----------eeecCccceEEEEe
Confidence 224677899999997 236899999988 77776433221100 0 13334489999999
Q ss_pred ccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
. |.++|=++|--|++||+.. ++.+..+......++ .+.+. ..+.|.++.++++ |-. .+|+|..++
T Consensus 169 ~--g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp-------phl~W~~~~~LVI-GW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 169 R--GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP-------PHLHWQDEDRLVI-GWG-DSVKICSIK 233 (846)
T ss_pred c--CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC-------CceEecCCCeEEE-ecC-CeEEEEEEe
Confidence 7 7899989886799999986 555555443332111 11111 1688987766444 433 478888887
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0023 Score=59.75 Aligned_cols=222 Identities=7% Similarity=0.042 Sum_probs=102.4
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
..+-|+||++.|+.. ++..|..+.+....... .....+..+.+-.-| .-. ..-.+.++|+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~-----------~~yp~~~~~~YPk~G-~~n----p~v~l~v~~~~~ 167 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPD-----------SQYPEVESIRYPKAG-DPN----PRVSLFVVDLAS 167 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSST-----------ESS-EEEEEE--BTT-S-------EEEEEEEESSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCcc-----------ccCCcccccccCCCC-CcC----CceEEEEEECCC
Confidence 468899999999986 67777766553221100 001123444442222 111 112456678877
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEE-EcC----CeEEEEEeeCCCCCeeeEeeec-cccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS-RDY----MTLKLWDINMDSGPVATFQVHE-HLRP 388 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s-~~~----~~i~iwd~~~~~~~~~~~~~~~-~~~~ 388 (515)
++... +.... .+..-...+..+.|.++++ +++. .+. ..+.++|..+ +.......... ....
T Consensus 168 ~~~~~-----~~~~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 168 GKTTE-----LDPPN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVD 235 (353)
T ss_dssp TCCCE-----E---H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSS
T ss_pred CcEEE-----eeecc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecCCccee
Confidence 65321 11000 0011125688999999998 4443 221 4566677765 33332232221 1111
Q ss_pred cccccccCCCccceeeEEEc-CCCC-EEEEecCCCcEEEEecCCCCcceeeeccCCCceee-EEECCCCCee-EeecCCC
Q 010206 389 KLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSR-PLGSLSG 464 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l-~s~~~d~ 464 (515)
. -....|. +++. +|.....||.-+||-+...+.....+....-.|.. +.+.++++.+ .++..+.
T Consensus 236 ----~--------~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 236 ----V--------YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp ----S--------SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGG
T ss_pred ----e--------ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCC
Confidence 0 0144554 5555 44455577765555444333333444444455544 5667766543 4444432
Q ss_pred ----eEEE--ec-CCCCCccccCCccccccCCe-eEEEEcCCCCEEEEEc
Q 010206 465 ----VVRR--VK-GADNSALDANGNAFDFSMKL-LHLAWHPSENSIACAA 506 (515)
Q Consensus 465 ----~v~l--~~-~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~la~~~ 506 (515)
.+.. ++ +..+. .+...... ..++|||++++++...
T Consensus 304 p~~r~lY~v~~~~~~~~~-------~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPK-------CLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTSBEEEEEETTETTEEE-------ESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCeE-------eccCCCCCceEEEECCCCCEEEEEE
Confidence 3333 22 12111 11122222 6999999999998543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00016 Score=68.04 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=108.0
Q ss_pred cCCeEEEEecCCCCEEEEe--C--C-CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe-
Q 010206 234 DYHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS- 307 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~- 307 (515)
...+..-.|+|+++.++.. . . ..+.++|+++++....+ .+. +.-...+|+|||.+++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~---g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFN---GNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccC---CccCCccCCCCCCEEEEEECCCCCc
Confidence 3456677899999987764 2 3 35999999877654321 222 233456799999666667777776
Q ss_pred -EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeec
Q 010206 308 -IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 308 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.++|+..+.... +.. -.+.-..-.|+|||+.++-.+| |.-.||-+..++.....+....
T Consensus 263 ~iy~~dl~~~~~~~-----Lt~------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNLPR-----LTN------------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCccee-----ccc------------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 5555666654211 111 0112235578999999998765 6666665554455445544333
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecC-CCc--EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.... .-.|+|||++|+..+. +|. |.+.++.++.. ...+ .+........+.++++.+...+
T Consensus 326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEc-cccccCCCCCcCCCCceEEEec
Confidence 2211 4679999999886653 344 66677766642 1111 1112222345566666554443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0009 Score=59.48 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 147 (515)
..|..++|+|...| ++..++.+.+|++.|+++..
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~ 227 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSC 227 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccce
Confidence 67999999887654 78888999999999998764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00087 Score=65.51 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=113.9
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCC-eEEEEecCCCCEEEE-e-CCC----cEEEEeCCCCCccc--
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFIS-A-DDL----RINLWNLEISNQSF-- 269 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s-~-~d~----~i~iwd~~~~~~~~-- 269 (515)
+.|+.+|.|.+.+ ... +..+. ...+... |..+....+..+|++ | +++ .+++|+++..+...
T Consensus 39 vigt~~G~V~~Ln-----~s~----~~~~~-fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 39 VIGTADGRVVILN-----SSF----QLIRG-FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEeeccccEEEec-----ccc----eeeeh-heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 8889999888776 110 01011 2344444 444443344456666 4 444 69999997542111
Q ss_pred ce---ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NI---VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~---~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. ..+-+........++.+++.+.+- ..+|+|-.+|.|..+.=.-.. .+..+.- .......+|+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~R--Drgsr~~----------~~~~~~~pIT 175 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILR--DRGSRQD----------YSHRGKEPIT 175 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchh--cccccee----------eeccCCCCce
Confidence 10 011111222245678899999987 899999999999887422111 0000100 0111236899
Q ss_pred EEEEccCCCE-EEEEcCCeEEEEEeeCCCCCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 347 DIKFARNGRH-ILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 347 ~~~~s~~~~~-l~s~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++..+++. +++++-..|.+|.+.. ..+. ..+..++.. ..+..+++....++.++. ..+.
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~---------------lnCss~~~~t~qfIca~~-e~l~ 238 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS---------------LNCSSFSDGTYQFICAGS-EFLY 238 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc---------------ceeeecCCCCccEEEecC-ceEE
Confidence 9999988887 4555556899999983 3333 334444433 236677765543444433 4799
Q ss_pred EEecCCCCcceeeec-cCC
Q 010206 425 VFGCSEGSAESTTLE-ASK 442 (515)
Q Consensus 425 iw~~~~~~~~~~~~~-~~~ 442 (515)
+|+.... .....+. +|.
T Consensus 239 fY~sd~~-~~cfaf~~g~k 256 (933)
T KOG2114|consen 239 FYDSDGR-GPCFAFEVGEK 256 (933)
T ss_pred EEcCCCc-ceeeeecCCCe
Confidence 9998744 3333444 443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=62.02 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 245 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 245 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
++..++++.++.+..+|+.+++...+. .+ .....+.. .+ ..++.++.+|.+..+|..+++...+...
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~----~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR------EY----GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee------cC----CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 344444447899999999887654321 11 11112222 23 4677788899999999998875432110
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
... ....+..+. +..|+.++ +|.|.+.|..+ ++.+........... .
T Consensus 323 -~~~--------------~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s 370 (394)
T PRK11138 323 -LLH--------------RLLTAPVLY--NGYLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------S 370 (394)
T ss_pred -cCC--------------CcccCCEEE--CCEEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------e
Confidence 000 011111121 34555555 49999999986 776655543221100 0
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEec
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
...+ .+..|+.++.||.|+.+++
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 1122 2446888899999988764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=71.26 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=119.4
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~ 375 (515)
..++.|+....+..+|+++.+.... .... .+.+.-+. .+++++.+|+. |+|.+-|.++ .+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~----~~v~------------a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT----TNVS------------ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FE 208 (1118)
T ss_pred cceeecchhhheeeeecccceeeee----eecc------------CCceEEEE--ecCcEEEeecccceEEeecCCc-Cc
Confidence 4577788888888899988764321 1110 02244333 46889999987 9999999997 89
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC---------CCcEEEEecCCCCcceeeeccCCCcee
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------SNLFRVFGCSEGSAESTTLEASKNPMR 446 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~~~v~ 446 (515)
.+.++..|.+. -.+|+-.|+.|++++. |.-|+|||++.-..+ ..+..+..| .
T Consensus 209 ~iht~~aHs~s-----------------iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 209 TIHTFDAHSGS-----------------ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPYGP-Q 269 (1118)
T ss_pred eeeeeeccccc-----------------eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc-CCcccccCc-h
Confidence 99999999876 3467778999999885 456789999875332 344444444 3
Q ss_pred eEEECCCC-CeeEeecCCCeEEEecCCCCCccccCCcccc-ccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 447 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 447 ~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
-+.|.|.- ..++..+..|.+.+.+............... .+..+..+.+|+.++.||++..+| +-+|.
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44566654 3577788888888844221211111111111 234599999999999999998554 66764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=69.88 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=79.4
Q ss_pred EEEecCCCCEEEEe-----CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 239 SISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
-.+|+|...+|+++ ..|+|.||- +++++...+ + ..-.+++++|+|.. -.|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t---~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------T---YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------c---cceehhhhccChHH-HHHhhccccceeEEEec
Confidence 35799999999875 378999884 334432211 1 12335679999987 78889999999999987
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEee
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 371 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~ 371 (515)
.+.+.- .+...|..+|..+.||++|..+++++. |.+.+|...
T Consensus 89 ~~~e~h----------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 89 NTTETH----------------TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCceee----------------eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 665421 113457789999999999999999998 999999886
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-05 Score=69.15 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=59.6
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 281 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
.....+.+++++|+. ..++.|+.||.|.+||...+.... ....-..+.++|+|+|..+++|
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~~------------------~ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTLL------------------AKAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeeee------------------eeecccceEEEEcCCCcEEEEE
Confidence 357789999999998 899999999999999987653211 0111346889999999999999
Q ss_pred cC-CeEEEEEeeC
Q 010206 361 DY-MTLKLWDINM 372 (515)
Q Consensus 361 ~~-~~i~iwd~~~ 372 (515)
++ |.+.+||+..
T Consensus 318 s~qGelQ~FD~AL 330 (545)
T PF11768_consen 318 SEQGELQCFDMAL 330 (545)
T ss_pred cCCceEEEEEeec
Confidence 98 9999999975
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=71.60 Aligned_cols=184 Identities=16% Similarity=0.170 Sum_probs=122.5
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..++-|+....+..+|+.+.+........... ......+++.+ +.|...|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-----------------v~imR~Nnr~l------------f~G~t~G 197 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-----------------VTIMRYNNRNL------------FCGDTRG 197 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCc-----------------eEEEEecCcEE------------Eeecccc
Confidence 346777777778888999888766555443211 22445667777 9999999
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--C--------CCcEEEEeCCCCCcccceeccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--------DLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~--------d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+|.+-| ..+.+ ...+ +..|.+.|.++.. .|++|+++ + |.-|++||++..+....+
T Consensus 198 ~V~LrD--~~s~~------~iht-~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---- 262 (1118)
T KOG1275|consen 198 TVFLRD--PNSFE------TIHT-FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---- 262 (1118)
T ss_pred eEEeec--CCcCc------eeee-eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCc----
Confidence 999877 33332 3333 4789998877655 67888875 3 445889999976654211
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+ +.++ .=+.|.|.-+..+++++..|...+-|..+........+.+ ....+.+..+.+|++++
T Consensus 263 --~~--~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v------------~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 263 --QF--PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV------------NPNGSGISAFDISSNGD 325 (1118)
T ss_pred --cc--ccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEE------------ccCCCcceeEEecCCCc
Confidence 22 2222 4567888877889999999999998843321110001111 11124599999999999
Q ss_pred EEEEEcC-CeEEEEEe
Q 010206 356 HILSRDY-MTLKLWDI 370 (515)
Q Consensus 356 ~l~s~~~-~~i~iwd~ 370 (515)
.++.|+. |.|.+|.-
T Consensus 326 alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eEEEecccCcEeeecC
Confidence 9999986 99999983
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00034 Score=68.02 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=58.9
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
.+.+++|+|..-.|+.| .-|.+.+|...+.+.- . ....|..+|..+.|+++| ..++++..-|.+.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-t-------v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-T-------VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee-e-------eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 45679999999899999 8999999998755432 1 224589999999999999 899999999999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0034 Score=59.50 Aligned_cols=213 Identities=12% Similarity=0.091 Sum_probs=110.5
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+..+.++|+++.++.++||...++.....+.. ..+.-...+|.+.+ .+|+-...+.|.++
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIY 94 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEE
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEE
Confidence 3445578999999999999998999989884322211 23445678899854 57777778899996
Q ss_pred -ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 -DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
++.... .+.+..+ ..+..+-. |.+|...+++.|.+||+.+ ++.+.++....
T Consensus 95 kn~~~~~-----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~------ 146 (443)
T PF04053_consen 95 KNFKNEV-----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA------ 146 (443)
T ss_dssp ETTEE-T-----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E------
T ss_pred EcCcccc-----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC------
Confidence 332221 0111110 11233322 8888887777899999996 77777776443
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC---------Cc-ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
|..+.|+++|++++..+.+ .+.|++.+.. -. ....+..-...|.+.+|..+ .++..
T Consensus 147 -----------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt 212 (443)
T PF04053_consen 147 -----------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT 212 (443)
T ss_dssp ------------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE
T ss_pred -----------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE
Confidence 2379999999999988765 6777665421 00 22333333566777777655 33333
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+.. .++-+-+++.. .......++.=+...|+.+.|.+...+
T Consensus 213 T~~-~lkYl~~Ge~~------~i~~ld~~~yllgy~~~~~~ly~~Dr~ 253 (443)
T PF04053_consen 213 TSN-HLKYLVNGETG------IIAHLDKPLYLLGYLPKENRLYLIDRD 253 (443)
T ss_dssp -TT-EEEEEETTEEE------EEEE-SS--EEEEEETTTTEEEEE-TT
T ss_pred cCC-eEEEEEcCCcc------eEEEcCCceEEEEEEccCCEEEEEECC
Confidence 333 33331111111 001124556667777776776666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.012 Score=50.96 Aligned_cols=128 Identities=10% Similarity=0.148 Sum_probs=62.6
Q ss_pred CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC--CCcccceecccC-ccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 233 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
+...+-.++|++.++.|+.+ ...-..+|.+.. ............ .........+.+++++|...++++.+..+..+
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence 44668899999987777777 555566666553 111111110000 00112334578999999876888888889999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEE
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 368 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iw 368 (515)
..+| .+|+... .+...... .-+...-...-.|+|.++|++.++..-+..++|
T Consensus 196 ~~~d-~~G~~~~----~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 196 LELD-RQGRVVS----SLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE--TT--EEE----EEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEC-CCCCEEE----EEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999 4554321 11111100 000001124678999999987777654655544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.2e-05 Score=70.41 Aligned_cols=110 Identities=12% Similarity=0.094 Sum_probs=84.4
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCC-CccccCCc
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN-SALDANGN 482 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~-~~~~~~~~ 482 (515)
--+++..+++++.|+.-|.+++|+...+..+....++....+..+..+++..++|.|+..|.|.+....+- .+......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34677789999999999999999999886665666666677778889999999999999999998222221 11112222
Q ss_pred --cccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 483 --AFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 483 --~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
...|+..|++++|++++..+.+|...|.++.
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 2246889999999999999999998886654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0006 Score=60.55 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=72.4
Q ss_pred cccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-E
Q 010206 337 FFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 413 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 413 (515)
++.++...|.+++|||..+ ++..++- ..|+|.|+.+ ...+..+..+.. +++++|.-|.. +
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~~~----------------~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAYNQ----------------IWSCCWDLDERHV 250 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheeccCC----------------ceeeeeccCCcce
Confidence 5677788999999999777 4555664 8999999997 666666665532 46999998765 5
Q ss_pred EEEecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECC
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTP 452 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~ 452 (515)
|..|-..|.|.|||++..+.....+.+ ...||..++.-+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 777889999999999976555555443 355666655533
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0074 Score=56.45 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=103.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCc-cccccCCceEEEEEec-----CC--CcEEEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP-----TH--CNMLAY 301 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~p-----~~--~~~l~~ 301 (515)
....++|++++.+.-| +++.| .+|.+.|.|++.+...++. .+... ........++++.|.. |+ .-.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4558999999997444 88888 8999999999866554431 11110 1112355688888862 11 137888
Q ss_pred EecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEE-EccC---------------------CCEEE
Q 010206 302 SSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 358 (515)
Q Consensus 302 ~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------~~~l~ 358 (515)
|+..|.+.+|.+.- ..- .....+.... ..+.++|..+. |+.+ ..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g--~f~v~~~~~~--------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNG--RFSVQFAGAT--------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEEE----------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EeCCCCEEEEEEecCCCC--ceEEEEeecc--------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 99999999998742 110 0011111110 11223333333 2110 12566
Q ss_pred EEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE-----cCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 359 s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
..++..++++...+ .+........... ...+++ ...+..|++-..+|.+++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~~~~~~---------------~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSFDDPFL---------------CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE-SS-EE---------------EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceeeccccc---------------cceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 67778999998875 4433322211111 112333 23566788888999999999997533
Q ss_pred ceeeeccC----CCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 434 ESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 434 ~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+ ..++.. ........++++|..+.-.+..-..++
T Consensus 295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 3 333322 233456677888887766655544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0032 Score=55.23 Aligned_cols=149 Identities=12% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
++++|..||.++++...+. .+..-.....+..+.. + ..+++++.++.+..||..+|+...+ ++...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVPD-G-GRVYVASGDGNLYALDAKTGKVLWR----FDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEEE-T-TEEEEEETTSEEEEEETTTSEEEEE----EECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEEe-C-CEEEEEcCCCEEEEEECCCCCEEEE----eeccc--
Confidence 4688999999887765542 1111112222223323 3 4677778999999999999986433 11110
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+.......++..++...++.|..+|..+ ++.+-.. ........ . ........++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence 11111122244444444558999999876 7766553 32211100 0 0022233347
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
..++.+..++.|..+|+++|+ ++.....
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~-~~w~~~~ 150 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGK-LLWKYPV 150 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTE-EEEEEES
T ss_pred CEEEEEeccCcEEEEecCCCc-EEEEeec
Confidence 788888889999999999984 4444433
|
... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0063 Score=56.69 Aligned_cols=93 Identities=13% Similarity=0.012 Sum_probs=53.4
Q ss_pred cccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc--eeeEEEcC-CCCE-
Q 010206 339 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD--KFECCLSG-DGGR- 413 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~- 413 (515)
......+.+++.+|++++.++.+. |+|.++|+.+ +..++.+++-....-..........-.. .....-.+ ...+
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 334456889999999998888766 9999999986 7777777765543110000000000000 00000000 0112
Q ss_pred EEEecCCCcEEEEecCCCC
Q 010206 414 VATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~ 432 (515)
++-+-.-|.|.||.++++.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 3456678999999999873
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=62.37 Aligned_cols=185 Identities=15% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCceEEEEEecCCCcEEEEE-ecC---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 283 TEVITSAEFHPTHCNMLAYS-SSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~-~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...+..-+|+|++ ..++.- -.. ..+.++|+.+++... +..+. +.-..-+|+|||+.|+
T Consensus 192 ~~~~~~p~ws~~~-~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~ 253 (425)
T COG0823 192 GSLILTPAWSPDG-KKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLA 253 (425)
T ss_pred CcceeccccCcCC-CceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEE
Confidence 4456677899998 444433 222 358889998875321 11111 2334568999999988
Q ss_pred EEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCc--EEEEecCCC
Q 010206 359 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEG 431 (515)
Q Consensus 359 s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~--i~iw~~~~~ 431 (515)
-.. + -.|.++|+.. +.+..+....+.. ..-.|+|||++|+-.+ ..|. |.+++++.+
T Consensus 254 f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~---------------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDG--KNLPRLTNGFGIN---------------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEECCCCCccEEEEcCCC--CcceecccCCccc---------------cCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 643 2 4566667764 3333333222110 1467999999988555 4554 555566654
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCC-CeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.....+....... .-.++|+|++++..+.. |...+. ...+..... ...+.........+|.|++..+...+
T Consensus 317 ~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~-~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDID-KNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeE-EeccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 3333344333332 77889999998887753 332220 011100000 11122334456777888888777544
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.064 Score=54.11 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=127.1
Q ss_pred CCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--------------CeEEEE
Q 010206 246 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------------GSIRLI 311 (515)
Q Consensus 246 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------------g~i~~w 311 (515)
...|+++..+.+++.-++.-++... ++.. -....+.+++.+.. ..+++.+.. ..++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------eeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4567777778888887764433221 1211 23445677777743 444444332 135556
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEc----------C-CeEEEEEeeCCCCCeee
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 379 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~----------~-~~i~iwd~~~~~~~~~~ 379 (515)
|-.+.+.... ..++..+ ..-.|.++.|..| +.++++|. . |+|.+|.+.. .+.++.
T Consensus 756 D~nTf~vl~~--hef~~~E----------~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEVLSS--HEFERNE----------TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeEEee--ccccccc----------eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 6555432211 1111100 0134666678876 67777653 2 7888888874 444444
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
...+.-... +.++.. -+|++||. -...|++|+..++ .++..-..+..++..+...-.+..++.
T Consensus 823 v~e~~v~Ga-------------v~aL~~-fngkllA~--In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKGA-------------VYALVE-FNGKLLAG--INQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeeccc-------------eeehhh-hCCeEEEe--cCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence 433321100 112221 16777764 4468999999876 344555677888999999999999999
Q ss_pred ecCCCeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 460 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 460 ~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
|..-+.+.+ +++.+-. -.....--+...++++.+-.+..++.+-...+++
T Consensus 886 gDlm~Sitll~y~~~eg~--f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf 937 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGN--FEEVARDYNPNWMTAVEILDDDTYLGAENSGNLF 937 (1096)
T ss_pred eeccceEEEEEEeccCCc--eEEeehhhCccceeeEEEecCceEEeecccccEE
Confidence 999898888 2222210 0011111235677888887777776655444444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0072 Score=60.79 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred cEEEEE-ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc------CCCEEEEEcCCeEEEEE
Q 010206 297 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD 369 (515)
Q Consensus 297 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~~~l~s~~~~~i~iwd 369 (515)
++|+.. .....++-.|+..|+.+. .|..+.. .+|..++-.. ..+.++.-+++.+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~----eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVE----EWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEE----EeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence 444433 346788889999998753 3443321 1243332211 22344444668999999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEE
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 449 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 449 (515)
.+..+..+..-..+. |..+.- ..+++-+.+| +||.|+.+|.||+||- .+..-...+.+-..||..+.
T Consensus 559 pR~~~~k~v~~~~k~---------Y~~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQ---------YSSKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cCCCCCceeeccccc---------cccCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence 986432221111111 111111 2356655554 6889999999999994 34333356778889999999
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
.+.||+|++..+...-+-+
T Consensus 626 vt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLI 644 (794)
T ss_pred ecCCCcEEEEeecceEEEE
Confidence 9999999888777666555
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.021 Score=55.45 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=72.4
Q ss_pred cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccC-----ccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 234 DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
......+.++|||++++++ -+.+|.+.|+.+.+..+.-- +++ ...+ -.......+|.++| +.+.+-..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~~~vvaeve-vGlGPLHTaFDg~G-~aytslf~ds 396 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPRDAVVAEPE-LGLGPLHTAFDGRG-NAYTTLFLDS 396 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCccceEEEeec-cCCCcceEEECCCC-CEEEeEeecc
Confidence 3556789999999999986 59999999998765422100 011 0111 12334567899998 7888888899
Q ss_pred eEEEEecCcc------cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 307 SIRLIDMRQS------ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 307 ~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
.|..||+... +.....+..++.+.. .+|......=.-.|||++|++...
T Consensus 397 qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~-------pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 397 QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ-------PGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eeEEEehHHHHHHhccccCCcceecccCCCc-------cceeeecCCCcCCCCCCEEEEccc
Confidence 9999998762 111111222222221 233333333334678999998653
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.018 Score=58.01 Aligned_cols=212 Identities=16% Similarity=0.189 Sum_probs=114.3
Q ss_pred CcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 126 SALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 126 ~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
..+|+.. .....|+-.|++.|++......+.... ...+.|+.+.-. ...+-.+.|-.+
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~----------------v~~~~p~~K~aq-----lt~e~tflGls~ 551 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP----------------VVDIAPDSKFAQ-----LTNEQTFLGLSD 551 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcc----------------eeEecccccccc-----cCCCceEEEECC
Confidence 3344443 355778888999998877666553210 123334333210 011222667777
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+..||.|+.. ........+.| .......|++-+.+|.+.+.+.+|.||+||-- ++.... .+.+...
T Consensus 552 n~lfriDpR~~~--~k~v~~~~k~Y--~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT-------~lp~lG~ 619 (794)
T PF08553_consen 552 NSLFRIDPRLSG--NKLVDSQSKQY--SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKT-------ALPGLGD 619 (794)
T ss_pred CceEEeccCCCC--Cceeecccccc--ccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhh-------cCCCCCC
Confidence 888888832211 11111111111 34456788888888855444489999999943 332221 4567789
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCc--ccc--cccccceeeeccCCCccc--ccccccc----------ceeEE
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SAL--CDTHSKLFEEQEAPGTRS--FFTEIIA----------SISDI 348 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~----------~i~~~ 348 (515)
+|..|..+.|| ++++.. -+..+.|++..- ++. .....+.+.....|.++. .-..|.. ..+..
T Consensus 620 pI~~iDvt~DG-kwilaT-c~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a 697 (794)
T PF08553_consen 620 PIIGIDVTADG-KWILAT-CKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA 697 (794)
T ss_pred CeeEEEecCCC-cEEEEe-ecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence 99999999999 666643 455778887632 110 001112222212222211 1112221 12234
Q ss_pred EEcc----CCCEEEEEcCCeEEEEEeeC
Q 010206 349 KFAR----NGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 349 ~~s~----~~~~l~s~~~~~i~iwd~~~ 372 (515)
.|+. ..+.|+++....+.+|+++.
T Consensus 698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k 725 (794)
T PF08553_consen 698 KFNTGIGKQETSIVTSTGPFVVTWNFKK 725 (794)
T ss_pred EEecCCCCccceEEEeccCEEEEEEHHH
Confidence 4432 35678887778999999863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00051 Score=65.54 Aligned_cols=123 Identities=10% Similarity=0.121 Sum_probs=89.0
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+...|.--+++..+++++.| +-|.+++|+-..+..... +..+..+.+..+..+++. .++|.|+..|.|.+
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-------KNEGATGITCVRSVSSVE-YLVAAGTASGRVSV 102 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-------cccCccceEEEEEecchh-HhhhhhcCCceEEe
Confidence 344556666778889999999 899999999876554321 233345556677788887 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~ 372 (515)
+-+..... ......-.. -..|...|++++|++++..+++|++ |+|.+-.+..
T Consensus 103 ~ql~~~~p-~~~~~~t~~---------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELP-RDLDYVTPC---------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCC-Ccceeeccc---------cccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 98877332 111111111 1236789999999999999999998 9998887764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.023 Score=49.18 Aligned_cols=177 Identities=7% Similarity=0.043 Sum_probs=87.7
Q ss_pred eccCcCCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 230 AHAHDYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
+.+-...+..++|+|+...|++ . ..+.|..++.+ ++ ..+.+ .+.+ .+-.-.|++..++ .++++.-.++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i-----~l~g-~~D~EgI~y~g~~-~~vl~~Er~~~ 87 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRI-----PLDG-FGDYEGITYLGNG-RYVLSEERDQR 87 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEE-----E-SS--SSEEEEEE-STT-EEEEEETTTTE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEE-----eCCC-CCCceeEEEECCC-EEEEEEcCCCc
Confidence 3455567999999998776665 4 57888777764 33 33222 3333 3456788898777 66665556899
Q ss_pred EEEEecCccccccc--ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeC--CCCCeeeEee
Q 010206 308 IRLIDMRQSALCDT--HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQV 382 (515)
Q Consensus 308 i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~--~~~~~~~~~~ 382 (515)
+.++++........ ....+... +...+...+-.++|+|.++.|+.+.+ .-..+|.+.. ....+.....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLG-------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EEEEEEeccccccchhhceEEecc-------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 99998854321111 01111110 01123356899999997666666543 5556666653 1111111110
Q ss_pred eccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEecC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~~~ 429 (515)
.. ... ....+.+..+++++|.. .+++....+..|.++|..
T Consensus 161 ~~-~~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 161 QD-LDD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp HH-HH-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred cc-ccc------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 00 000 11122334588999865 456666777888888844
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=47.47 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=77.2
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEE
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 369 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd 369 (515)
..++...+++.|+..+.+.--|..+|++..+.+.. ..|.+-+.- -|.+++.|.. |.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 34454478889999999999999999876542111 112222221 4678888877 9999999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+ +.....+...+.... +....+++..+..|+.|+..+.-|.++.++.
T Consensus 80 ~~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ecc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 997 666666554443321 4566789999999999999999999987554
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.067 Score=47.96 Aligned_cols=262 Identities=9% Similarity=0.028 Sum_probs=125.6
Q ss_pred cCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 123 ~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+++++.+++++ ....|.+||..+........+...+.... . ......+++.||+.+-+
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~------~~~~~~~ls~dgk~~~V---- 111 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--V------PYKNMFALSADGKFLYV---- 111 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--------GGGEEE-TTSSEEEE----
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--c------ccccceEEccCCcEEEE----
Confidence 44566666542 34579999999987766555543211100 0 01115678888887722
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccccee
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 272 (515)
.-.+-..+|.+-| +... +..... ....+..+--.++..+...|.||++.-..+....+.....
T Consensus 112 ------~N~TPa~SVtVVD--l~~~------kvv~ei---~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 112 ------QNFTPATSVTVVD--LAAK------KVVGEI---DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp ------EEESSSEEEEEEE--TTTT------EEEEEE---EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ------EccCCCCeEEEEE--CCCC------ceeeee---cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 2223334555544 1111 111111 0011111211223334444688888888777444332111
Q ss_pred cccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 273 DVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
...+....+++. .-++...+ ..++--+.+|.|+--|+....... ...+......... -.--.+...-++++
T Consensus 175 ---t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~--~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 175 ---TKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKA--DGWRPGGWQLIAYH 246 (342)
T ss_dssp ---EEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHH--TTEEE-SSS-EEEE
T ss_pred ---ccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccc--cCcCCcceeeeeec
Confidence 011222222222 33444444 455557889999888886654211 1222110000000 00011445567888
Q ss_pred cCCCEEEE----Ec-----C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEe-c
Q 010206 352 RNGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG-S 418 (515)
Q Consensus 352 ~~~~~l~s----~~-----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-s 418 (515)
+....|+. |. + ..|.++|+.+ ++.+.++..... +.++..+.|.+ +|++. .
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~----------------~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHP----------------IDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEE----------------ESEEEEESSSS-EEEEEET
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCc----------------cceEEEccCCCcEEEEEcC
Confidence 75555543 21 2 3577777776 777777765432 23788888776 56544 4
Q ss_pred CCCcEEEEecCCCCcceeeec
Q 010206 419 YSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~ 439 (515)
.++.+.+||..+++ ++.+++
T Consensus 310 ~~~~l~v~D~~tGk-~~~~~~ 329 (342)
T PF06433_consen 310 GDGTLDVYDAATGK-LVRSIE 329 (342)
T ss_dssp TTTEEEEEETTT---EEEEE-
T ss_pred CCCeEEEEeCcCCc-EEeehh
Confidence 68999999999984 444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.1 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=29.5
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
+++..+++||+|+++|.-.+ |.+.+...+. .+.+..+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~ 256 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT 256 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec
Confidence 57999999999999998766 8988887664 444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.035 Score=51.14 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=97.4
Q ss_pred CcEEEEeCCCC-C--cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc-ccccccceeeecc
Q 010206 255 LRINLWNLEIS-N--QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA-LCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~ 330 (515)
|.|.++++... . ...+.+ ......++|++++-- ++ + |+. +..+.|.+|++...+ +... ..++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i-----~~~~~~g~V~ai~~~-~~-~-lv~-~~g~~l~v~~l~~~~~l~~~--~~~~--- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLI-----HSTEVKGPVTAICSF-NG-R-LVV-AVGNKLYVYDLDNSKTLLKK--AFYD--- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEE-----EEEEESS-EEEEEEE-TT-E-EEE-EETTEEEEEEEETTSSEEEE--EEE----
T ss_pred cEEEEEEEEcccccceEEEEE-----EEEeecCcceEhhhh-CC-E-EEE-eecCEEEEEEccCcccchhh--heec---
Confidence 88999999874 1 111111 223357889999877 44 4 443 345799999998776 2211 0000
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
....+.++... +.+++.|+- ..+.++.++.....+..+...... ..++++.|-+
T Consensus 128 ----------~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~-------------~~v~~~~~l~ 182 (321)
T PF03178_consen 128 ----------SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQP-------------RWVTAAEFLV 182 (321)
T ss_dssp ----------BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS--------------BEEEEEEEE-
T ss_pred ----------ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC-------------ccEEEEEEec
Confidence 11245555544 669999886 889988777433334433322211 1256788886
Q ss_pred CCCEEEEecCCCcEEEEecCCC------C--cceeeeccC-CCceeeE---EECCC--C------CeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEG------S--AESTTLEAS-KNPMRRQ---VQTPS--R------PSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~------~--~~~~~~~~~-~~~v~~~---~~~~~--~------~~l~s~~~d~~v~l 468 (515)
+++.++.+..+|.+.++..... + .+......| .+.++++ ...|. + +.++.++.+|.|-.
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 6678999999999999987631 1 121222222 3556666 33441 1 24777888888774
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.13 Score=48.85 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=39.0
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEe
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s 459 (515)
+..+++||+|++||.-..+|.+.+.+..-. .....+... ..+...+.|..+...++.
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 458999999999999999999998875433 222333333 445668888766544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0072 Score=56.13 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=91.1
Q ss_pred EEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC--------CEEEEEcCCeEEEEE
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--------RHILSRDYMTLKLWD 369 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--------~~l~s~~~~~i~iwd 369 (515)
+|.++.....++-.|++.|+.+. .|..+. .|.-+.+.|+. +.|+.-++..|.-||
T Consensus 348 il~~~~~~~~l~klDIE~GKIVe----EWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVE----EWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred EeeCCCCcCcceeeecccceeee----EeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 45566666778888999888753 233221 25556666643 234444668899999
Q ss_pred eeCCCC-CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE
Q 010206 370 INMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 448 (515)
Q Consensus 370 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 448 (515)
.+-.++ .+....+|.... +.-+ .|.+-. ...+|+.||.+|.|++||. .+..-...+++-..+|..+
T Consensus 411 pRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYST---------KNNF--SCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ccccCcceeeeeecccccc---------cccc--ceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 986444 233333333221 1111 133333 4457999999999999998 4544446788999999999
Q ss_pred EECCCCCeeEeecCCCeEEE
Q 010206 449 VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 449 ~~~~~~~~l~s~~~d~~v~l 468 (515)
..+.+|++++..+...-+.+
T Consensus 478 dvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLI 497 (644)
T ss_pred EeeccCcEEEEecccEEEEE
Confidence 99999999888776655554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0084 Score=56.93 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=73.0
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
.....+.++|+|++++.+++|...|+.... .+ ....+.. ...+|.+.++ +|+-...++
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~-~r--~k~~G~g------------------~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALA-WR--NKAFGSG------------------LSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTT-TE--EEEEEE-------------------SEEEE-TSSE-EEEE-TTS-
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccC-Cc--ccccCce------------------eEEEEecCcc-EEEEECCCe
Confidence 457889999999999999889988988331 11 1122221 1789999665 555555788
Q ss_pred EEEE-ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 423 FRVF-GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 423 i~iw-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
|.|+ +++.. ....++... .+..+-. |..|...+.+ .|.+++ ..+.. ..+.. ..|..+.|++++
T Consensus 91 I~I~kn~~~~--~~k~i~~~~-~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i------~~i~v-~~vk~V~Ws~~g 156 (443)
T PF04053_consen 91 IKIYKNFKNE--VVKSIKLPF-SVEKIFG---GNLLGVKSSD-FICFYDWETGKLI------RRIDV-SAVKYVIWSDDG 156 (443)
T ss_dssp EEEEETTEE---TT-----SS--EEEEE----SSSEEEEETT-EEEEE-TTT--EE------EEESS--E-EEEEE-TTS
T ss_pred EEEEEcCccc--cceEEcCCc-ccceEEc---CcEEEEECCC-CEEEEEhhHccee------eEEec-CCCcEEEEECCC
Confidence 9996 44322 111222211 2222322 7777777655 666632 22221 11111 238999999999
Q ss_pred CEEEEEcCCcEEEEe
Q 010206 500 NSIACAASNSLYMYY 514 (515)
Q Consensus 500 ~~la~~~~~~~~i~~ 514 (515)
+++|..+.+.++|+.
T Consensus 157 ~~val~t~~~i~il~ 171 (443)
T PF04053_consen 157 ELVALVTKDSIYILK 171 (443)
T ss_dssp SEEEEE-S-SEEEEE
T ss_pred CEEEEEeCCeEEEEE
Confidence 999999999998864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.049 Score=48.79 Aligned_cols=264 Identities=11% Similarity=0.100 Sum_probs=125.2
Q ss_pred eEEEEECCCCCeEEeec----------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 38 ISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.-.+..||||+.+++++ +.-.|.+||..+-...+.+..+.. .+....
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k-----------~R~~~~------------ 94 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK-----------PRAQVV------------ 94 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS------------B--BS------------
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc-----------chheec------------
Confidence 34467899999988753 234699999887654321111000 000000
Q ss_pred cccccceeEEEEEeecCCCcEEEee--eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC-C
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-G 184 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g-~ 184 (515)
...+.+++ +.+++++++. +--..|.+-|+..++......... +...-|.+ .
T Consensus 95 -----~~~~~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~~~ 148 (342)
T PF06433_consen 95 -----PYKNMFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSGNR 148 (342)
T ss_dssp -------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEETT
T ss_pred -----ccccceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecCCC
Confidence 01122233 4556666663 445567778888777665544331 11111211 1
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEeCCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~ 263 (515)
.+ .+.|.||.+.-.. +.. ++....+....|.......+..-++... +.++...-+|.|+--|+.
T Consensus 149 ~F------------~~lC~DGsl~~v~--Ld~-~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dls 213 (342)
T PF06433_consen 149 GF------------SMLCGDGSLLTVT--LDA-DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLS 213 (342)
T ss_dssp EE------------EEEETTSCEEEEE--ETS-TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEET
T ss_pred ce------------EEEecCCceEEEE--ECC-CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEecc
Confidence 12 5667777776655 332 2222222222222222222223334333 445555678888888876
Q ss_pred CCCcccc-eecccC---ccccccCCceEEEEEecCCCcEEEEEec-------CC--eEEEEecCcccccccccceeeecc
Q 010206 264 ISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS-------KG--SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 264 ~~~~~~~-~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg--~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
....... -+.+-. ..-..-.+.-.-+++++...++++.-.. |+ .|-++|+.+++.+.+ ++.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R----i~l-- 287 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR----IPL-- 287 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE----EEE--
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE----EeC--
Confidence 5432211 010000 0001112333456777655233332221 11 477778887765432 221
Q ss_pred CCCccccccccccceeEEEEccCCC-EEEEEc--CCeEEEEEeeCCCCCeeeEeee
Q 010206 331 APGTRSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~--~~~i~iwd~~~~~~~~~~~~~~ 383 (515)
..++.+|.++.+.+ +|++.+ ++.|.+||..+ ++.+.++..-
T Consensus 288 -----------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 288 -----------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp -----------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred -----------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 14588999998766 554433 48999999997 7877777643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00045 Score=39.93 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.9
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
.|...|.+++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5788999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.09 Score=49.15 Aligned_cols=148 Identities=15% Similarity=0.250 Sum_probs=76.7
Q ss_pred CcCCeEEEEecCCCCEEEE-e--C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-cCCCcEEEEEecC
Q 010206 233 HDYHINSISNNSDGETFIS-A--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSK 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~d 305 (515)
....+..+.|.++++.|+. - . ...+.+.|..++.......... .+--..-....|. +++..++.....+
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcC
Confidence 3566889999999984443 2 2 2345566776554332211111 1111222345554 6664666666677
Q ss_pred CeEEEE--ecCcccccccccceeeeccCCCcccccccccccee-EEEEccCCCEEE-EEc--C-CeEEEEEeeCC-CCCe
Q 010206 306 GSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHIL-SRD--Y-MTLKLWDINMD-SGPV 377 (515)
Q Consensus 306 g~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~-s~~--~-~~i~iwd~~~~-~~~~ 377 (515)
|.-+|| +...+.. +. +....-.|. -+.++++++.|+ ++. . ..-.||.+... +..+
T Consensus 258 G~~hly~~~~~~~~~-----~~------------lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-----RQ------------LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp SSEEEEEEETTSSEE-----EE------------SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred CCcEEEEEcccccce-----ec------------cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 765554 4444331 11 111223453 467788777655 343 2 56667776653 4444
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..+....... ..+.|||++++++-
T Consensus 321 ~~LT~~~~~~---------------~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 321 KCLTCEDGDH---------------YSASFSPDGKYYVD 344 (353)
T ss_dssp EESSTTSSTT---------------EEEEE-TTSSEEEE
T ss_pred EeccCCCCCc---------------eEEEECCCCCEEEE
Confidence 5554333221 27999999998773
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.11 Score=48.97 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=119.5
Q ss_pred CeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEE
Q 010206 236 HINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~w 311 (515)
....+++++.+..+.. . ++..|.+.|..+.+....+ .-......++++|++..+.++-. .++.+.+.
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 3456778888885554 4 6899999997655443221 11225678999999844444444 26888888
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCee-----eEeeec
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHE 384 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~-----~~~~~~ 384 (515)
|-.+.+.... ...+ ..+ ..++++|+|..++... ++.|.+.|... ..... ......
T Consensus 146 d~~t~~~~~~---~~vG-------------~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~ 207 (381)
T COG3391 146 DAATNKVTAT---IPVG-------------NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGT 207 (381)
T ss_pred eCCCCeEEEE---EecC-------------CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCC
Confidence 8877765322 0110 023 7899999999888765 49999999764 22221 011111
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecC---CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG- 460 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 460 (515)
. -..+.++|+|+++..... ++.+...|..++................+...|+++.+...
T Consensus 208 ~----------------P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 208 G----------------PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred C----------------CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 1 126899999997665443 26888889887633322122221145578899999987766
Q ss_pred cCCCeEEEecCC
Q 010206 461 SLSGVVRRVKGA 472 (515)
Q Consensus 461 ~~d~~v~l~~~~ 472 (515)
+..+.+.++++.
T Consensus 272 ~~~~~V~vid~~ 283 (381)
T COG3391 272 SQGGTVSVIDGA 283 (381)
T ss_pred cCCCeEEEEeCC
Confidence 334677774433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.031 Score=40.85 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe---cCCCcEEEEEecCCeEEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~---p~~~~~l~~~~~dg~i~~ 310 (515)
..|.+++-... ..|+.+ .+|+|-+|+-... ..+ . . .+..+.++.+. -+|...|++|-.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR---i-----K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR---I-----K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee---e-----c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 45566665555 457777 8999999875422 211 1 1 23335666553 345458999999998753
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.15 Score=45.76 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=120.9
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
..++.|+.| ++| +.++++.......++. +...|..+...|+- +.+++- .|+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccc
Confidence 457788888 777 8999983333322221 23349999999986 455444 3599999999875543211
Q ss_pred cceeeeccCCCccccccccccceeEEE---EccCCCEEEEEcCCeEEEEEeeCCC----CCeeeEeeecccccccccccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~s~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~ 395 (515)
. ......... ..........+..++ -...+..|+.+...+|.+|...... +..+.+.....
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---------- 140 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---------- 140 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence 0 000000000 000000112333333 1224556666766799999987521 23344433322
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--c----------CCCceeeEEECCCCCeeEeecCC
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--A----------SKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~----------~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
+..++|. ++.|+.|..+ ...+.|+.++... ..+. . ...++..+. .+++.+|++. .+
T Consensus 141 ------~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~-~~ 208 (275)
T PF00780_consen 141 ------PSSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY-DN 208 (275)
T ss_pred ------cEEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe-cc
Confidence 2378887 5577777654 4778899866332 1111 1 112333333 3445666554 34
Q ss_pred CeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 464 GVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 464 ~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
-.+.+ ..|..... ..+.......++++ ...+|.+-.++.+-||+.
T Consensus 209 ~g~fv~~~G~~~r~-----~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~~ 254 (275)
T PF00780_consen 209 IGVFVNKNGEPSRK-----STIQWSSAPQSVAY--SSPYLIAFSSNSIEVRSL 254 (275)
T ss_pred eEEEEcCCCCcCcc-----cEEEcCCchhEEEE--ECCEEEEECCCEEEEEEC
Confidence 44444 32322111 12223556677777 456888888888888863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=61.23 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+.-+.|+|.-.++|.+ .+|.|.+..++ .+.. + ++.-+...++ +++|.||| ++|+.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRl---w-----tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRL---W-----TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-ccee---E-----eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 89999988887 3322 2 3343455555 99999999 9999999999999999
Q ss_pred cCccccccc
Q 010206 313 MRQSALCDT 321 (515)
Q Consensus 313 ~~~~~~~~~ 321 (515)
+.++..+..
T Consensus 91 ve~~~~l~~ 99 (665)
T KOG4640|consen 91 VEKGGRLVS 99 (665)
T ss_pred ccCCCceec
Confidence 999876543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.16 Score=45.81 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=60.7
Q ss_pred cceeEEEEccCCCEEEEEcC--CeEEEEEeeC-CCCCe----eeEe-eeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 343 ASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPV----ATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..-+.++||||++.|+..+. +.|.-|++.. ....- .... ...+... .++...+|.+.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD---------------G~~vDadG~lw 227 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD---------------GMAVDADGNLW 227 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC---------------ceEEeCCCCEE
Confidence 45678999999998888754 8888887762 11111 1111 1111111 67888899987
Q ss_pred EEecCCC-cEEEEecCCCCcceeeeccCCCceeeEEE-CCCCCee
Q 010206 415 ATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQ-TPSRPSR 457 (515)
Q Consensus 415 ~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l 457 (515)
+++-.+| .|..|+.. + .++...+.....+++++| .|+.+.|
T Consensus 228 ~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEE
Confidence 6554444 99999988 5 555666665556666666 3444444
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.0
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~ 65 (515)
......|.+++|+|..++||.|+.+|.|.||.+.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3445679999999999999999999999999983
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.079 Score=45.56 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=108.6
Q ss_pred eEEEEEecCCCcEEEEEecCCe-EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 361 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--- 361 (515)
-..++|+|..+.-++.+-.-|+ ..++|....+.... ....+ ...+.+| =.|||||++|++..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~----~~s~~----~RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVT----LVSQE----GRHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEE----Eeccc----Cceeecc------cccCCCCcEEEeecCCC
Confidence 4567788877666776666665 56788877654321 11100 1113333 25899999999741
Q ss_pred ---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-------C----------
Q 010206 362 ---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-------N---------- 421 (515)
Q Consensus 362 ---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-------g---------- 421 (515)
.|.|-|||.+...+.+..+..|.--. ..+.+.+||+.|+.+... |
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 28999999986556666666654321 278999999998865421 1
Q ss_pred -cEEEEecCCCCcce-eeec--cCCCceeeEEECCCCCeeEeecCCCe-----EEE---ecCCCCCccccCCc-cccccC
Q 010206 422 -LFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV-----VRR---VKGADNSALDANGN-AFDFSM 488 (515)
Q Consensus 422 -~i~iw~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~-----v~l---~~~~~~~~~~~~~~-~~~~~~ 488 (515)
++.+-|..++..+. .+|. .+...++.++..+||...+-+-.-|. -.+ .++..+.-..+..+ ...+..
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 22233433332111 2333 34456777777777765544322211 001 11111110001101 112334
Q ss_pred CeeEEEEcCCCCEEEEEc--CCcEEEEeC
Q 010206 489 KLLHLAWHPSENSIACAA--SNSLYMYYA 515 (515)
Q Consensus 489 ~i~~~~~s~~~~~la~~~--~~~~~i~~~ 515 (515)
-|-+++-+-+..+++..+ .|..++|++
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 567777777777776555 455777764
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0033 Score=59.51 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=68.6
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
..+.-+.|+|.-.++|.+.. |.|-+..+. .+.+-++..+...+ ..+++|.|||+.||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v--------------~~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENV--------------TASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCcc--------------ceeeeecCCCCEEEEEecCC
Confidence 46888999999999999876 888888876 45555555444321 12899999999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEEC
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 451 (515)
+|++-|..++..+...+-....++..+.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999998854433333344556666664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.05 Score=50.18 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=62.3
Q ss_pred CeEEEEecCCCCEEEEe-C--------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe--
Q 010206 236 HINSISNNSDGETFISA-D--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-- 292 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-- 292 (515)
.-..+-|.|..+.++++ . ..++.+||+.+.+.. +.+++ ......+..|.|.
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~-Q~idL-----g~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL-QTIDL-----GEEGQMPLEVRFLHD 255 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE-EEEES------TTEEEEEEEEE-SS
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe-eEEec-----CCCCCceEEEEecCC
Confidence 34567778887777765 1 257999999876543 33322 1112335567774
Q ss_pred cCCCcEEEEEecCCeEEEEec-CcccccccccceeeeccCC-------CccccccccccceeEEEEccCCCEEEEEcC--
Q 010206 293 PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEAP-------GTRSFFTEIIASISDIKFARNGRHILSRDY-- 362 (515)
Q Consensus 293 p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 362 (515)
|+...-++.+...++|..|-- ..+.-..+ ++.+.+..+ .-..-+..-..-|+.+.+|.|.++|.....
T Consensus 256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 256 PDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp TT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CCccceEEEEeccceEEEEEEcCCCCeeee--EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 444233444444555554433 33332111 222221110 000111222356899999999999998764
Q ss_pred CeEEEEEeeCCCCCeeeE
Q 010206 363 MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~ 380 (515)
|.|+.||+..+.++..+-
T Consensus 334 GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 334 GDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp TEEEEEE-SSTTS-EEEE
T ss_pred CcEEEEecCCCCCCcEEe
Confidence 999999998755555443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.51 Score=46.35 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.+..|+.++.||.|+.+|.++|+.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4578888999999999999998433
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=37.02 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=29.9
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+..|...|.++.|.+++ .++++++.|+.+++||
T Consensus 7 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 345678899999999988 8999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.033 Score=55.20 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=80.8
Q ss_pred ceeEEEEccCCCEEEEEc-------C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.+.+.+++|+|+.++.-. + ..|.+++.. +.......+.. .+.-.|+|||+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCce
Confidence 578899999999887632 3 355555542 33222222221 1267899998877
Q ss_pred EEecCC------------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE---e--cCCCCCcc
Q 010206 415 ATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---V--KGADNSAL 477 (515)
Q Consensus 415 ~s~s~d------------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l---~--~~~~~~~~ 477 (515)
++.+.. +.+.+.++..+. ... .....|..+.++|||..++... ++.|.+ . .++. ...
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eee
Confidence 776532 233333443321 111 2245799999999999887765 467777 2 2222 100
Q ss_pred ccCCcc-ccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 478 DANGNA-FDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 478 ~~~~~~-~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
...... .+....+.+++|.+++.+++........+|
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred cccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence 000001 123344689999999996644333333344
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.12 Score=45.61 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=87.6
Q ss_pred ceeEEEEccCCCEEEEEc--C--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 344 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
.+.+.+++++++.++.-. + ..+.++... +.....+.+.. +....|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence 588899999999887643 3 555555443 22222222221 236789999887777776
Q ss_pred CCcEEEEe-cCCCCcceeeeccC--CCceeeEEECCCCCeeEeec---CCCeEEE----ecCCC-CCccccCCccc-ccc
Q 010206 420 SNLFRVFG-CSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGNAF-DFS 487 (515)
Q Consensus 420 dg~i~iw~-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~---~d~~v~l----~~~~~-~~~~~~~~~~~-~~~ 487 (515)
+...+++. ..++......+... ...|..+.++|||..+|... .++.+.+ .+... +.......... ...
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 67777764 33332222223222 12899999999999876665 3577776 22222 11000011111 224
Q ss_pred CCeeEEEEcCCCCEEEEEcCCc
Q 010206 488 MKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~ 509 (515)
..+.+++|.+++.+++.+...+
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCC
Confidence 6889999999999888766443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.098 Score=49.03 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
++..|.-||++-.... ......+ .+ .......|.+-..+| +++.|+.+|.||+||- .+...
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~k--qy-~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A------------ 463 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSK--QY-STKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA------------ 463 (644)
T ss_pred cCCceEEecccccCcceeeeeecc--cc-ccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh------------
Confidence 8888999998854431 1111000 11 113345666666666 8999999999999996 43321
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+..+.+...+|..|..+.+|++|++..+..+-+-++.
T Consensus 464 ---KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 ---KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ---hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2235556689999999999999998877788887764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.12 Score=44.50 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=103.8
Q ss_pred EecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE-----
Q 010206 241 SNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR----- 309 (515)
Q Consensus 241 ~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~----- 309 (515)
.|+|||.+|.+. . -|.|-+||.+..-+.. ..+..|.-....+.+.+|| +.++.+. |-|.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv-------gE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV-------GEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccccee-------cccccCCcCcceeEEecCC-cEEEEeC--Cceeccccc
Confidence 489999999886 3 3789999998443222 2556677778899999999 6666543 2233
Q ss_pred ---------------EEecCcccccccccceeeeccCCCcccccc--ccccceeEEEEccCCCEEEEEcC-Ce----EEE
Q 010206 310 ---------------LIDMRQSALCDTHSKLFEEQEAPGTRSFFT--EIIASISDIKFARNGRHILSRDY-MT----LKL 367 (515)
Q Consensus 310 ---------------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~-~~----i~i 367 (515)
+.|-.++.++.++ ++. .+.-.|..++..+||..++.+-. |. --+
T Consensus 190 gR~~lNldsMePSlvlld~atG~liekh--------------~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL 255 (366)
T COG3490 190 GRTELNLDSMEPSLVLLDAATGNLIEKH--------------TLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL 255 (366)
T ss_pred CccccchhhcCccEEEEeccccchhhhc--------------cCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence 3333333332221 111 23346888888888887776532 21 111
Q ss_pred EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCcee
Q 010206 368 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMR 446 (515)
Q Consensus 368 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~ 446 (515)
--....+++++.+...+.....+. +. |-+++.+.+..+++..+ ..+...+||..++..+. +..-....
T Consensus 256 vg~~~~g~~l~~~~~pee~~~~~a-----nY---igsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~---~a~l~daa 324 (366)
T COG3490 256 VGHFRKGEPLEFLDLPEEQTAAFA-----NY---IGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS---EAALPDAA 324 (366)
T ss_pred eeeccCCCcCcccCCCHHHHHHHH-----hh---hhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe---cccccccc
Confidence 111222444444443332211111 11 22677776666655444 56678899999984321 11111111
Q ss_pred eEEECCCCCeeEeecCCCeEEE
Q 010206 447 RQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 447 ~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.++ +.+.-++..+.+|.+++
T Consensus 325 Gva--~~~~gf~vssg~G~~~~ 344 (366)
T COG3490 325 GVA--AAKGGFAVSSGQGRIIF 344 (366)
T ss_pred cce--eccCceEEecCCceEEe
Confidence 222 33344555666777776
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.42 Score=43.20 Aligned_cols=224 Identities=13% Similarity=0.068 Sum_probs=109.4
Q ss_pred EEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 239 SISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
+-.|.++...|+-+ ..+.|.-|+..+++.. .+. +.+.+.++..-..+ ..|+++.. .+.++++.++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---------~~~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~ 95 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR---------VFP-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTG 95 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE---------EEE-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCC
Confidence 34577777766655 6899999998755432 111 23333444433333 34443333 3455666554
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-c---------CCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
.............. ....+.+...|+|.+.++. . ...-.+|-+...+...+.+..+-..
T Consensus 96 ~~~t~~~~~~~~~~-----------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 96 GKITLLAEPEDGLP-----------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred ceeEEeccccCCCC-----------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 43111111111110 0346778888999888762 2 1111344444213333333322111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCC-CCcce-----eeeccCCCceeeEEECCCCCeeEe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSE-GSAES-----TTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
-..++||||++.|+.+. ..+.|+-|++.. ..... ..........-.++...+|.+-++
T Consensus 165 ---------------~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~ 229 (307)
T COG3386 165 ---------------PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA 229 (307)
T ss_pred ---------------cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe
Confidence 13799999998777654 458888887762 11111 111122233335555566666544
Q ss_pred ecCCC-eEEE--ecCCCCCccccCCccccccCCeeEEEEc-CCCCEEEEEcC
Q 010206 460 GSLSG-VVRR--VKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAAS 507 (515)
Q Consensus 460 ~~~d~-~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~~ 507 (515)
+-.+| .|.. .++..... .. -....+++++|- |+.+.|.+.+.
T Consensus 230 a~~~g~~v~~~~pdG~l~~~--i~----lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGE--IK----LPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred cccCCceEEEECCCCcEEEE--EE----CCCCCCccceEeCCCcCEEEEEec
Confidence 44442 3333 22221111 11 112566777775 56676665543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.48 Score=43.59 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=20.7
Q ss_pred cCCceEEEEEecCCCcEEEEEec---CCe-EEEEecCc
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSS---KGS-IRLIDMRQ 315 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~---dg~-i~~wd~~~ 315 (515)
-...+.-+.|+|..+.+|+.|.. +.. -|+|-+++
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 35567788999998777777655 221 35665544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0057 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.671 Sum_probs=26.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~ 144 (515)
..|..++|||..| +++.++.||.|.++++.
T Consensus 12 ~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 6799999988766 99999999999999984
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.55 Score=43.27 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=83.6
Q ss_pred cEEEEEec---------C-CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEE
Q 010206 297 NMLAYSSS---------K-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 366 (515)
Q Consensus 297 ~~l~~~~~---------d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~ 366 (515)
.+|+.|+. . |.|.+|++..........+.... ....++|++++-- ++ .|+++..+.|.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~----------~~~~g~V~ai~~~-~~-~lv~~~g~~l~ 110 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS----------TEVKGPVTAICSF-NG-RLVVAVGNKLY 110 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE----------EEESS-EEEEEEE-TT-EEEEEETTEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE----------EeecCcceEhhhh-CC-EEEEeecCEEE
Confidence 67777764 2 88999999874100000111111 1233678888766 44 46666668999
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCc
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNP 444 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~ 444 (515)
+|++.. .+.+.......... -++++. ..+++|+.|.....+.++...........+. .....
T Consensus 111 v~~l~~-~~~l~~~~~~~~~~-------------~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 111 VYDLDN-SKTLLKKAFYDSPF-------------YITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp EEEEET-TSSEEEEEEE-BSS-------------SEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred EEEccC-cccchhhheecceE-------------EEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 999996 44222222222111 023443 3466999999888888876554322222222 23445
Q ss_pred eeeEEECCCCCeeEeecCCCeEEE
Q 010206 445 MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 445 v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++.+-+++..++.++.+|.+.+
T Consensus 175 v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp EEEEEEE-SSSEEEEEETTSEEEE
T ss_pred EEEEEEecCCcEEEEEcCCCeEEE
Confidence 777778766679999999999988
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.29 Score=48.79 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCeEEEEecCCCCEEEEeC-------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-C
Q 010206 235 YHINSISNNSDGETFISAD-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g 306 (515)
..+.+.+++|+++.++... |..-.||-...+.....+ ..+ .....-.|+|+| ..+.+.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~g--~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LEG--HSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ecC--CCCCCceECCCC-CceEEEecCcc
Confidence 4677889999999987642 433344433222222111 111 236778899997 666655433 2
Q ss_pred eEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC--CCCCeeeEeee
Q 010206 307 SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~--~~~~~~~~~~~ 383 (515)
.+++.+-.. +++ .......... . ......|..+.|||||..++.-.+++|.+=-+.. .+. ..+...
T Consensus 420 ~~~v~~~~~~gql-----~~~~vd~ge~-~---~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~ 488 (591)
T PRK13616 420 VVRVIRDPATGQL-----ARTPVDASAV-A---SRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNP 488 (591)
T ss_pred eEEEeccCCCceE-----EEEeccCchh-h---hccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeeccc
Confidence 233332211 111 1011100000 0 0122579999999999999876567777633322 122 222111
Q ss_pred ccccccccccccCCCccc-eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC--CCceeeEEECCCCCeeEee
Q 010206 384 EHLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~ 460 (515)
.... ..+.+ +.++.|..++.++ .+..++...+|.+.-.+.....+... ..++.+++-.++ .+...
T Consensus 489 ~~l~---------~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 489 REVG---------PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred EEee---------cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEE
Confidence 0000 00001 2378999999865 44544544555554333332222332 566777777764 45556
Q ss_pred cCCCeEEE
Q 010206 461 SLSGVVRR 468 (515)
Q Consensus 461 ~~d~~v~l 468 (515)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 77787777
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.48 Score=40.34 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=46.5
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
|++++.|...|.+++-+..++.+. +. +..- +.|-+-+-+ ..++
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~-------------------w~----f~~~-------------~~vk~~a~~-d~~~ 105 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQI-------------------WN----FVIL-------------ETVKVRAQC-DFDG 105 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhhe-------------------ee----eeeh-------------hhhccceEE-cCCC
Confidence 567888889999999888887642 00 1110 122222222 3457
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEee
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFD 153 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~ 153 (515)
..+..++.|++....|.++.......+
T Consensus 106 glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecc
Confidence 799999999999999999877665543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.24 Score=36.38 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred eeEEEEcc---CC-CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC
Q 010206 345 ISDIKFAR---NG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 419 (515)
Q Consensus 345 i~~~~~s~---~~-~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~ 419 (515)
|+++++.. || ..|++|++ ..|++|+- ...+..+..... +++++-... ..++.+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e~~~----------------v~~L~~~~~-~~F~Y~l~ 61 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITETDK----------------VTSLCSLGG-GRFAYALA 61 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEecccc----------------eEEEEEcCC-CEEEEEec
Confidence 45555554 33 46666665 99999985 345555544432 235555544 56888889
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCC---CeeEeecCCCeEEE
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRR 468 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~l 468 (515)
+|+|-+|+.... +...+....++.-..+..++ +-|++|-.+|.|.+
T Consensus 62 NGTVGvY~~~~R---lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 62 NGTVGVYDRSQR---LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCEEEEEeCcce---eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 999999886533 23333333333333343332 35777777776653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=1 Score=41.53 Aligned_cols=166 Identities=15% Similarity=0.133 Sum_probs=67.7
Q ss_pred cCCeEEEEecCCCCEEE-Ee-C---CCc-EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe----
Q 010206 234 DYHINSISNNSDGETFI-SA-D---DLR-INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~-s~-~---d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---- 303 (515)
...+.-+.|+|....++ -| . +.. -++|-+++.......+ .+ ..-...+.-=-|.|||..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec---CCCCcccccccccCCCCEEEEEeecCCC
Confidence 45567788898655444 45 2 432 3677666544332211 10 111233344458899844444333
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE-EcC--C--------------eEE
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLK 366 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~--~--------------~i~ 366 (515)
.+..|.-+|+.+++.. ...+. ....-+-.++||++++. |++ . -|.
T Consensus 262 ~~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 2345666777765421 01111 12334555689988876 443 1 344
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEec
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGC 428 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~ 428 (515)
++++. ......+..|......+.--..... --..|+|||++|+ +....|...||=+
T Consensus 324 ~~~~~--~~~~~~l~~h~~sw~v~~~~~q~~h----Php~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVE--AGRFRKLARHDTSWKVLDGDRQVTH----PHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETT--TTEEEEEEE-------BTTBSSTT--------EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred Eeccc--cCceeeeeeccCcceeecCCCccCC----CCCccCCCCCEEEEECCCCCCccEEEE
Confidence 55554 2233334444321110000000000 1579999999866 4456777666643
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.93 Score=39.61 Aligned_cols=205 Identities=10% Similarity=0.109 Sum_probs=108.3
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
+++.|+|+.+.| ++......--++= +.+ +...+......-...-.+.+..++++.++- .
T Consensus 89 S~LTynp~~rtL------------Fav~n~p~~iVEl----t~~----GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER 148 (316)
T COG3204 89 SSLTYNPDTRTL------------FAVTNKPAAIVEL----TKE----GDLIRTIPLTGFSDPETIEYIGGNQFVIVDER 148 (316)
T ss_pred cceeeCCCcceE------------EEecCCCceEEEE----ecC----CceEEEecccccCChhHeEEecCCEEEEEehh
Confidence 389999999988 5555444443321 111 222222211112334567777778777776 6
Q ss_pred CCcEEEEeCCCCCcccceec--ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 254 DLRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
++.+.++.+........... ++.......+...-.++|.|.+ ..|..+-...=+.||.+..... .+..+..
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~ 221 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHAS 221 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccc
Confidence 99999988775543322211 1111222225567899999998 6777777777777777653321 0111100
Q ss_pred CCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
..+.....---..|.++.|++ .+.+|+-+.+ +.+.-.|.. +.++..+..+.+...-..++. ..-.++..+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dip------qaEGiamDd 293 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIP------QAEGIAMDD 293 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCC------CcceeEECC
Confidence 000000000113578888987 4555555655 777777765 666666665554322111111 112567776
Q ss_pred CCCEE
Q 010206 410 DGGRV 414 (515)
Q Consensus 410 ~~~~l 414 (515)
+|.+.
T Consensus 294 ~g~lY 298 (316)
T COG3204 294 DGNLY 298 (316)
T ss_pred CCCEE
Confidence 66643
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.058 Score=54.89 Aligned_cols=102 Identities=14% Similarity=0.237 Sum_probs=71.9
Q ss_pred cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCC
Q 010206 297 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG 375 (515)
Q Consensus 297 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~ 375 (515)
..++.|+..|.+-..|+... +.. ...+ ..-.++|++++|+.+|+.++.|- +|.|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~----~~~n----------e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP----LHQN----------ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch----hhcC----------CccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57888999999998887653 210 0000 01126899999999999999985 49999999996 78
Q ss_pred CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
+++.+..+..... .+..+.+..++..+.++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888877664422 2345666667777888877776 5554
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.14 Score=49.23 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=62.9
Q ss_pred ceeEEEEccCCCEEEEE-----cC-CeEEEEEeeCCCCCeee-EeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 344 SISDIKFARNGRHILSR-----DY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-----~~-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
.+....+||+|++++.+ ++ ..|+++|+.+ ++.+.. +..... ..+.|.+|++.|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~~~-----------------~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENPKF-----------------SSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEEES-----------------EEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccccc-----------------ceEEEeCCCCEEEE
Confidence 35578899999999853 44 6799999987 544332 222211 14999999988765
Q ss_pred ecCC-----------CcEEEEecCCCCcc-eeeeccCCCc--eeeEEECCCCCeeEeec
Q 010206 417 GSYS-----------NLFRVFGCSEGSAE-STTLEASKNP--MRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 417 ~s~d-----------g~i~iw~~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~s~~ 461 (515)
...+ ..|+.|++.+.... ...++....+ ...+..++++++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 5432 34788888876433 2344544443 45778899999876443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.74 Score=45.64 Aligned_cols=116 Identities=10% Similarity=0.132 Sum_probs=69.9
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe--cCCCcEEEEEecCCeEEEEec
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~--p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.-+.-+.-++.-++- +..++.|||.+.....++. .+ ...+.|..+.|. |++ +.+++-+..+.|.+|--
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEc
Confidence 3334444444443344 5778999999876543321 22 347789999985 677 67777888888988864
Q ss_pred Cccc-----ccccccceeeeccCCCccccccccc-cceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 314 RQSA-----LCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 314 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
.... .....++.++ +..|+ .+|.+..|.++|.++++ +.+.+.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEE-eCCEEEEECCC
Confidence 2211 1111112222 22233 57899999999866554 44588888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.43 Score=47.20 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=51.2
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
..+-+.-|.-++.-++-+....+.|||...+... +...|.. .+.|.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE---------------------~~~~f~~-------------~~~I~ 76 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE---------------------YEESFSE-------------DDPIR 76 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEE---------------------EeeeecC-------------CCcee
Confidence 3444555555555555445568999998766532 2233322 27799
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEc
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKV 143 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~ 143 (515)
++.|...++++.+++.+..+.|.+|.-
T Consensus 77 dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 77 DLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 999999999999999999999999864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.05 Score=55.33 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=68.7
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
.+-.++.|++ |.+-..|+..+-.+ .|.+. ....+|++++|+.+|..++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-----~~~ne----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP-----LHQNE----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch-----hhcCC----------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 3557778877 88888888742111 12111 11234779999999999999999999999999987
Q ss_pred CcceeeeccCCCceeeEEE---CCCCCeeEeecCCCeE
Q 010206 432 SAESTTLEASKNPMRRQVQ---TPSRPSRPLGSLSGVV 466 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~d~~v 466 (515)
...+.+..|..|...+.+ ..++..++++..-|.+
T Consensus 163 -k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 163 -KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred -cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCce
Confidence 555777777777766654 3455567777777743
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.024 Score=56.37 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=60.3
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCCCcccceecccCcccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 280 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 280 (515)
|.+-+|+ +.-.++.................+.-+.|.| +..++..+ ++++|++..+++.... -+.
T Consensus 153 g~lfVy~--vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~---------l~r 221 (1283)
T KOG1916|consen 153 GELFVYD--VDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS---------LFR 221 (1283)
T ss_pred hhhheee--hHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH---------HHH
Confidence 5677888 4444444333333332233334445566655 56667777 7899998887654331 223
Q ss_pred ccCCceEEE-----------EEecCCCcEEEEEecCCeEEEEecC
Q 010206 281 DLTEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 281 ~~~~~i~~i-----------~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
+|...+..+ ..+||| ..|++.+.||.+++|.+.
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 354444332 268999 899999999999999874
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.3 Score=41.79 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=90.2
Q ss_pred eeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC---
Q 010206 345 ISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--- 419 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~--- 419 (515)
-..+++++.+..++... ++.|.+.|... .+........... ..++++++++.+..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~-~~~~~~~~vG~~P----------------~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTAT-NTVLGSIPVGLGP----------------VGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcc-cceeeEeeeccCC----------------ceEEECCCCCEEEEEecccC
Confidence 45678888888666543 48999999775 4444443322211 27999999987776554
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec-CCCeEEEecCCCCCcc-ccCCccccccCCeeEEEEcC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKGADNSAL-DANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~v~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~ 497 (515)
++.+.+.|-.+.+ +..+...-..| ..+++.|++..+.... .++.+.+++....... ............-..++++|
T Consensus 139 ~~~vsvid~~t~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 139 NNTVSVIDAATNK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred CceEEEEeCCCCe-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 6888898888764 33444444445 8999999999655554 6777777442222100 00000122234457899999
Q ss_pred CCCEEEEEcC
Q 010206 498 SENSIACAAS 507 (515)
Q Consensus 498 ~~~~la~~~~ 507 (515)
+|+++.+...
T Consensus 217 ~g~~~yV~~~ 226 (381)
T COG3391 217 DGNRVYVAND 226 (381)
T ss_pred CCCEEEEEec
Confidence 9997776553
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.076 Score=44.13 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=78.1
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++++.+|+.|+-++++..+...+ ...-+... .. -+....-+++|+.+|.|.+|......... ..+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-------se~~~~e~-~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-------SERFIDEG-QR---VVTASAKLMVGTSDGAVYVFNWNLEGAHS---DRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-------hhhhhhcc-ee---ecccCceEEeecccceEEEecCCccchHH---Hhhh
Confidence 44555788888888775443221 11112222 11 11222678999999999999876221100 0000
Q ss_pred eccCCCccccccccccceeEEEE-ccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKF-ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.....|.++.- -.++.+..++. +|.|+.|++.. .+.+.....|.... ....
T Consensus 99 ------------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~~ 151 (238)
T KOG2444|consen 99 ------------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEEL 151 (238)
T ss_pred ------------cccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------ccee
Confidence 00122322221 22444555554 59999999984 66665555554210 1244
Q ss_pred EEcCCCCEEEEe--cCCCcEEEEecCCC
Q 010206 406 CLSGDGGRVATG--SYSNLFRVFGCSEG 431 (515)
Q Consensus 406 ~~s~~~~~l~s~--s~dg~i~iw~~~~~ 431 (515)
..+..+++|+.. |.|..++.|++..-
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhh
Confidence 555566777777 78888888888743
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.2 Score=39.90 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=97.1
Q ss_pred CeEEEEecCCCCEEEEe-C-CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---
Q 010206 236 HINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--- 306 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--- 306 (515)
.+..+.++|++++++.+ + .| .++++|+++++..... +.. .....+.|.+++ +.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~~--~~~~~~~W~~d~-~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IEN--PKFSSVSWSDDG-KGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EEE--EESEEEEECTTS-SEEEEEECSTTTS
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------ccc--cccceEEEeCCC-CEEEEEEeCcccc
Confidence 34467899999999976 2 33 5999999987543221 111 112249999998 5555544332
Q ss_pred --------eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE--c--C-CeEEEEEeeCC
Q 010206 307 --------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINMD 373 (515)
Q Consensus 307 --------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~--~--~-~~i~iwd~~~~ 373 (515)
.|..|.+.+...-. ...|+..... .....+..++|+++|+.. + . ..+.+.|+...
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 36667766543211 1233332211 125678889999998863 2 2 45777777642
Q ss_pred ---CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-Ee--cCCCcEEEEecCCCCc--ceeeeccCCC--
Q 010206 374 ---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TG--SYSNLFRVFGCSEGSA--ESTTLEASKN-- 443 (515)
Q Consensus 374 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~--s~dg~i~iw~~~~~~~--~~~~~~~~~~-- 443 (515)
......+....... ...+... .+.+++ |. ...+.|.-.++..... -...+..+..
T Consensus 263 ~~~~~~~~~l~~~~~~~--------------~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 263 GSPDAKPKLLSPREDGV--------------EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp TTSS-SEEEEEESSSS---------------EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CCCcCCcEEEeCCCCce--------------EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 12333333222110 0122222 333433 32 2346777777776542 1124444444
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..+... .+.+++....++.-+|
T Consensus 328 ~l~~~~~~-~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 328 SLEDVSLF-KDYLVLSYRENGSSRL 351 (414)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred eEEEEEEE-CCEEEEEEEECCccEE
Confidence 33333332 2234555566666555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.8 Score=36.52 Aligned_cols=144 Identities=12% Similarity=0.156 Sum_probs=81.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe
Q 010206 234 DYHINSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
..+.+.-..+|+|++++.. .| |.++.|-+. .+.. .+...-.--+.++|+.+...+.+.-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~--------~i~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVE--------LIWNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCce--------eeehhccCCccccccccCcEEEEEcc
Confidence 4556677789999996643 22 344444432 1111 11111223357889888745555666
Q ss_pred cCCeEEEEe--cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeE
Q 010206 304 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 304 ~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~ 380 (515)
.+-.|.-|| ..+|.+..+ -..++..+... +. + -.--.++..-+|.+.++.- .++|...|..+ ++.+.++
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~----~e-~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQP----FE-S-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCCC----cC-C-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 678887787 666654322 12222222100 00 0 0122344455777777654 48999999997 8999888
Q ss_pred eeeccccccccccccCCCccceeeEEEcCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
..+... ++++||-..
T Consensus 250 klPt~q---------------itsccFgGk 264 (310)
T KOG4499|consen 250 KLPTPQ---------------ITSCCFGGK 264 (310)
T ss_pred EcCCCc---------------eEEEEecCC
Confidence 876533 568998643
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.3 Score=37.49 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=86.6
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe-
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd- 312 (515)
.+.+.+++++++.++.. .++.-.+|-.......... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 67889999999988764 2444444444433332211 1 22367788899997 6777666666666664
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----CCeEEEEEeeCCCCC-eeeEeeecccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 387 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~-~~~~~~~~~~~ 387 (515)
...+..... ..+.. .-...|..+.+||||..++.-. ++.|.+--+.....- ...+.......
T Consensus 95 ~~~g~~~~~---~v~~~----------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGEPV---EVDWP----------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcceeE---Eeccc----------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 333322110 01110 0012799999999999888632 478888776542222 11111111000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
......+.++.|.+++.+++.+...
T Consensus 162 --------~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 162 --------PPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred --------ccccCcceeeeecCCCEEEEEeCCC
Confidence 0111235689999999987766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.01 E-value=5.4 Score=41.73 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..-..+.|.++.+.|+.++-..+.++|+++......+ ........|..+.-+|..+.+++.-+ ...|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 4456788999988999998888999999876543212 12234577899998887433333333 3577777877
Q ss_pred cc
Q 010206 315 QS 316 (515)
Q Consensus 315 ~~ 316 (515)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 63
|
These proteins are found in fungi. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=30.49 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.5
Q ss_pred CceEEEEEecCCC--cEEEEEecCCeEEEEecCcc
Q 010206 284 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 284 ~~i~~i~~~p~~~--~~l~~~~~dg~i~~wd~~~~ 316 (515)
+.+++++|+|... .+|+.+-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998663 58888888999999999963
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.15 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=24.0
Q ss_pred ceeEEEEccC-C--CEEEEEcC-CeEEEEEeeC
Q 010206 344 SISDIKFARN-G--RHILSRDY-MTLKLWDINM 372 (515)
Q Consensus 344 ~i~~~~~s~~-~--~~l~s~~~-~~i~iwd~~~ 372 (515)
.++++.|||. + .+|+-..+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5899999984 3 57877777 9999999984
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.5 Score=42.52 Aligned_cols=74 Identities=7% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCeEEEEec--CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC--Cc---EEEEEecCC
Q 010206 235 YHINSISNN--SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH--CN---MLAYSSSKG 306 (515)
Q Consensus 235 ~~v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~--~~---~l~~~~~dg 306 (515)
..+++++++ ...++||++ ....|.||-.......... .....+...|.+|.|-++. +. .+++++-.|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~-----~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH-----VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc-----ccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 478889988 788888888 6777777755432211110 0112366779999997754 12 778889999
Q ss_pred eEEEEec
Q 010206 307 SIRLIDM 313 (515)
Q Consensus 307 ~i~~wd~ 313 (515)
.+.+|++
T Consensus 239 ~v~~~~I 245 (717)
T PF08728_consen 239 EVWTFKI 245 (717)
T ss_pred cEEEEEE
Confidence 9998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.88 E-value=4 Score=39.55 Aligned_cols=154 Identities=15% Similarity=0.206 Sum_probs=77.4
Q ss_pred ceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCC-----eeE--EEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEK-----KVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 113 ~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~-----~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
+.|..+.|.|- .+...|++....+.|.+|.+... +.. +..+... +.. ..+....|.|..
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~p-----------vLpQGCVWHPk~ 124 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFP-----------VLPQGCVWHPKK 124 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-Ccc-----------cCCCcccccCCC
Confidence 56999999873 22336777788899999998622 211 1111111 000 111245667766
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEe
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd 261 (515)
..|.++. ....--++++ .... ...+. --...+.|.|.+|.+||+.|+.+ +.-.-++||
T Consensus 125 ~iL~VLT------------~~dvSV~~sV--~~d~-----srVka-Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 125 AILTVLT------------ARDVSVLPSV--HCDS-----SRVKA-DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ceEEEEe------------cCceeEeeee--eeCC-----ceEEE-eccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 6663321 1111111221 0000 01111 12345789999999999999988 344567787
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 304 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~ 304 (515)
-... ...-..+. ....-.+.|.++.-.-+ ..+|.+..
T Consensus 185 ~~qK--tL~~Csfc--PVFdv~~~Icsi~AT~d--sqVAvaTE 221 (671)
T PF15390_consen 185 SAQK--TLHRCSFC--PVFDVGGYICSIEATVD--SQVAVATE 221 (671)
T ss_pred Cchh--hhhhCCcc--eeecCCCceEEEEEecc--ceEEEEec
Confidence 5422 11111111 11123456666665544 35565554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.73 Score=46.97 Aligned_cols=96 Identities=9% Similarity=0.083 Sum_probs=56.2
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccc----ccc-cccccCCCccceeeEEEcCC---CCEE
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR----PKL-CDLYENDSIFDKFECCLSGD---GGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~v~~~~~s~~---~~~l 414 (515)
-.|..+.++|+|++|+..+...|.|-.+.........+.+..... ..+ ..++....-..|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999986665666666642100001111000000 000 01122222234678999996 4789
Q ss_pred EEecCCCcEEEEecCCCCcceeee
Q 010206 415 ATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
+.-..|+++|+||+.......+++
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEE
Confidence 989999999999998654443333
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=3.4 Score=38.25 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=83.8
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..+.++.+.|++.+++++..|.+..- .+..++.-........ ..++.+.+.++++.++.| ..|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~--------------~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSS--------------RRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCc--------------ccceeeeEcCCCCEEEEe-cCCE
Confidence 56888999999988888877655431 1111222222211110 113488899999877765 4566
Q ss_pred EEEEecCCCCcceeeecc----CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 423 FRVFGCSEGSAESTTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
+++=....+. .-..... ....+..+.+.+++..++.+ .+|.+.. .++.+.+....... ......+.+.|..
T Consensus 237 ~~~~s~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~--~~~~~~~~~~~~~ 312 (334)
T PRK13684 237 IRFNDPDDLE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGE--EVPSNFYKIVFLD 312 (334)
T ss_pred EEEccCCCCC-ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCC--CCCcceEEEEEeC
Confidence 5432233321 1111111 12346778888887765554 5676666 45444442111101 1234688899988
Q ss_pred CCCEEEEEcCCcEEEE
Q 010206 498 SENSIACAASNSLYMY 513 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~ 513 (515)
+++.+++|....|.-|
T Consensus 313 ~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 313 PEKGFVLGQRGVLLRY 328 (334)
T ss_pred CCceEEECCCceEEEe
Confidence 8888887776655544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.77 E-value=4.6 Score=39.73 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=23.1
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
..++.++.++.|..+|.++++.......
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4788888999999999999987766543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.1 Score=37.32 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=70.8
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc-cCc-----cccccCCceEEEE--EecCCCcEEEEEecCCe
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV-KPA-----NMEDLTEVITSAE--FHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~-~~~-----~~~~~~~~i~~i~--~~p~~~~~l~~~~~dg~ 307 (515)
.|..+...++-+.|++-.|+.+.++++..-......... .+. ........+...+ -...+ ...+.....+.
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeecccccc-ceEEEEEECCE
Confidence 388888888888888777799999998765433210000 000 0001122333333 12333 34444555569
Q ss_pred EEEEecCcccccc-cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC
Q 010206 308 IRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 376 (515)
Q Consensus 308 i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~ 376 (515)
|.+|......... ...+.+..+ ..+.+++|. ++.++.|......+.|+.+ +..
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp-------------~~~~~i~~~--~~~i~v~~~~~f~~idl~~-~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLP-------------DPPSSIAFL--GNKICVGTSKGFYLIDLNT-GSP 169 (275)
T ss_pred EEEEEEECCcccccceeEEEEcC-------------CCcEEEEEe--CCEEEEEeCCceEEEecCC-CCc
Confidence 9999887642211 222333322 468889998 5677777666788999985 443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.69 E-value=6 Score=40.64 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC-C---------c--ccceecccCccc-cccCCceEEEEEecCC--CcE
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEIS-N---------Q--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNM 298 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~---------~--~~~~~~~~~~~~-~~~~~~i~~i~~~p~~--~~~ 298 (515)
...|..+.++|+|++++......|.|..+... . . ..+.+.+....+ ..+...|..+.|+|.+ ...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35788999999999999874455555555321 0 0 111111111111 2345678999999973 268
Q ss_pred EEEEecCCeEEEEecCccc
Q 010206 299 LAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~~~ 317 (515)
|+.-..|+.+|+||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888999999999997544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.32 Score=44.84 Aligned_cols=157 Identities=8% Similarity=0.042 Sum_probs=90.1
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee-eEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~s~dg 421 (515)
..+..+-..|||+.++.-+...+.++++.+ +.+..-+.-+... ++....|+ ++..-..|.-|..++.||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~dsp--------g~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDSP--------GDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcCC--------CchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 578888999999999987778899999974 2221111111100 01111111 122223456678889999
Q ss_pred cEEEE-ecCCCCcc-e---eeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-CCCCCccccCCccccccCCeeEEEE
Q 010206 422 LFRVF-GCSEGSAE-S---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 422 ~i~iw-~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.|.-| |.+.+... . ..++-...++..+.-....+.+++-+..|++.+.. ..+.. +..+ ..-..+..+++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~---lL~~--~~~~~~~~~~~ 365 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL---LLFE--RAYQAPQLVAM 365 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc---eehh--hhhcCcceeee
Confidence 99887 55443222 1 11222234444444455566777777788777721 11111 1110 01236678999
Q ss_pred cCCCCEEEEEcCCcEEEEe
Q 010206 496 HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~~~i~~ 514 (515)
||.+.+|++-...++.++.
T Consensus 366 Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 366 SPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred CcccchheeecCCceEEEE
Confidence 9999999998888777764
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.28 E-value=2 Score=41.44 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=84.2
Q ss_pred cCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC----CCcEEEEEecCC
Q 010206 234 DYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT----HCNMLAYSSSKG 306 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~----~~~~l~~~~~dg 306 (515)
-.++..++|..-.+.+.+. .+|.+++=|... -+.-+.|..+.|.|- .+.+|| --...
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~v---------------iGqFEhV~GlsW~P~~~~~~paLLA-VQHkk 82 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKV---------------IGQFEHVHGLSWAPPCTADTPALLA-VQHKK 82 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCccE---------------eeccceeeeeeecCcccCCCCceEE-Eeccc
Confidence 3678889996544445554 355555444321 223455899999885 223444 55677
Q ss_pred eEEEEecCcccccccc---cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 307 SIRLIDMRQSALCDTH---SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+|.+.....-... .++.+..+ +.. ---..+.|+|....|+.-.. ..-.+++++.+...++.=..
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e---~~p------vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIRE---PFP------VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccC---Ccc------cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc
Confidence 8999998632211100 01111111 000 01245779998888876433 23345566543333322111
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCS 429 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~ 429 (515)
..+. |.+.||.+||+.|+.+ +..=.-++||-.
T Consensus 154 ~~G~---------------IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 154 TSGL---------------IHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCce---------------EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 1211 5599999999987754 333456788754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=5.9 Score=37.48 Aligned_cols=146 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred ceeEEEEccCCCEEEEEcCCeEE-EEEeeCCCCCe-eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 344 SISDIKFARNGRHILSRDYMTLK-LWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~~~i~-iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
....+..+++|.+++.+..|.+. -||- +... ........ ..++.+.+.+++.+++++ .+|
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~--------------~~l~~v~~~~dg~l~l~g-~~G 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASA--------------RRIQNMGWRADGGLWLLT-RGG 301 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCc--------------cceeeeeEcCCCCEEEEe-CCc
Confidence 35556778899999888876443 3332 2211 11111111 013478899999987765 455
Q ss_pred cEEEEecCCCCc----ceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEE
Q 010206 422 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 422 ~i~iw~~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
.+. +....+.. ....+.. ....+..+.+.+++..+++| ..|.+.. .++.+.+..... .-.....++.+.
T Consensus 302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~--~~~~~~~ly~v~ 377 (398)
T PLN00033 302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKG--ADNIAANLYSVK 377 (398)
T ss_pred eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEccc--cCCCCcceeEEE
Confidence 543 33333321 1112211 22347788898887776666 4565555 556666532110 112245788999
Q ss_pred EcCCCCEEEEEcCCcEE
Q 010206 495 WHPSENSIACAASNSLY 511 (515)
Q Consensus 495 ~s~~~~~la~~~~~~~~ 511 (515)
|.++++.+++|...-++
T Consensus 378 f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 378 FFDDKKGFVLGNDGVLL 394 (398)
T ss_pred EcCCCceEEEeCCcEEE
Confidence 98887777776654443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.7 Score=36.35 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=107.0
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
-...+.+|.|..+.+-+++|..+.| +....+...-+.... .... ......+|.|..+ ..+++| ..+.| +.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~ivG-~~g~l-l~ 85 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIVG-EPGLL-LH 85 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEEE-ETTEE-EE
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEEc-CCceE-EE
Confidence 3457889999877778888876654 334334333221110 0110 1233667888653 345544 44532 22
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
-...++. ++.-..+ ....+....+....++..++++..|. ||.....++.=+.+.....
T Consensus 86 T~DgG~t-------W~~v~l~------~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------ 144 (302)
T PF14870_consen 86 TTDGGKT-------WERVPLS------SKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------ 144 (302)
T ss_dssp ESSTTSS--------EE----------TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S--------
T ss_pred ecCCCCC-------cEEeecC------CCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc------
Confidence 2222321 1110000 00001223333334444444444343 4444433433322221110
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec-
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK- 470 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~- 470 (515)
..+..+..++||+++++++....+.-||-...... ..-......+..+.|.|++...+.+ ..|.+++-+
T Consensus 145 --------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 --------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp ----------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred --------ceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 11347788899999998877666667875432122 1222346789999999997765544 888888832
Q ss_pred --CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 471 --GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 471 --~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
..+.+...... ...-.-.+.+++|.+++...|+++...++
T Consensus 215 ~~~~~~w~~~~~~-~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 215 PDDGETWSEPIIP-IKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp TTEEEEE---B-T-TSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred CCCccccccccCC-cccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 11111100111 11113348999999999988888776544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.48 E-value=6.3 Score=36.44 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~ 294 (515)
..++|+|.|++++|++-..|.|++++.. +.....+..+. ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~-~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLP-EVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-T-TTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccc-cccccccCCcccceeccc
Confidence 4678999999988887789999999933 33211121111 122334567899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.1 Score=35.25 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=110.8
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.+-...+.++.|+|+. +.|++......-.++=...|+++.+..-. + -.....+.+..+|++.++
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~--------------g-~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT--------------G-FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc--------------c-cCChhHeEEecCCEEEEE
Confidence 3445559999999998 66666666555555555566654321111 1 022345677777777777
Q ss_pred EcC-CeEEEEEeeCCCCCeeeEeeecccccccccccc-CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce--
Q 010206 360 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-- 435 (515)
Q Consensus 360 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~-- 435 (515)
-.. +.+.++.+.. ...+....... -.+..... |.. .-.++|+|....|+.+-+-.=+.||..+......
T Consensus 146 dER~~~l~~~~vd~-~t~~~~~~~~~---i~L~~~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 146 DERDRALYLFTVDA-DTTVISAKVQK---IPLGTTNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred ehhcceEEEEEEcC-CccEEeccceE---EeccccCCCCcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCccccc
Confidence 654 8888888875 32221111100 00000000 111 2379999999998888877777777665332111
Q ss_pred eeeccC-------CCceeeEEECCC-CCeeEeecCCCeEEE--ecCCCCCccccCCcccccc---CCeeEEEEcCCCCEE
Q 010206 436 TTLEAS-------KNPMRRQVQTPS-RPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFS---MKLLHLAWHPSENSI 502 (515)
Q Consensus 436 ~~~~~~-------~~~v~~~~~~~~-~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 502 (515)
.....+ -..+..+.+.+. +..|+-+.+++.+.- .+|.-.....+.....+.. ..-..++..++|+.-
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lY 298 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLY 298 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEE
Confidence 111111 123455666543 445555555554433 1111111001111111112 234678888999888
Q ss_pred EEEcCCcEEEEe
Q 010206 503 ACAASNSLYMYY 514 (515)
Q Consensus 503 a~~~~~~~~i~~ 514 (515)
+++-.|.++.|.
T Consensus 299 IvSEPnlfy~F~ 310 (316)
T COG3204 299 IVSEPNLFYRFT 310 (316)
T ss_pred EEecCCcceecc
Confidence 777777766653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.39 Score=40.10 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=39.4
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
+..+++| .+|.|.+|........... .......|-++-- -.++ .+..+++.||.|+.|++.-.+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4456677 8999999998733322211 1111233333222 2233 5888999999999999876553
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.64 Score=48.18 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=91.8
Q ss_pred CCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceec--ccC-ccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 235 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVD--VKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~--~~~-~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..+..+...+|+...++. .+-.|..||+++-........ ++. +..........++.|+|.-+...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345555666776665553 455788899875432211100 000 01111233456788998766677888889999
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
++..+....... ..+. -....++++|+|.|+.++.|.. |++.-|... .+....+......
T Consensus 181 ~V~~~~~~~~~v---~s~p-------------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~~- 241 (1405)
T KOG3630|consen 181 RVKSTKQLAQNV---TSFP-------------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPVE- 241 (1405)
T ss_pred hhhhhhhhhhhh---cccC-------------cccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCcC-
Confidence 988765433211 1111 1146899999999999999987 999888765 3333333322211
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
+ .+.|.+++|-....+++.-
T Consensus 242 -------e---~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 242 -------E---NYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -------C---CcceeEEEEecceeEEEEe
Confidence 1 2346789998887777643
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.3 Score=39.44 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred CeEEEEec--CCCCEEEEe-CCCcEEEEeCCCCCcc-----------cceecccCccccccCCceEEEEEe--cCCCcEE
Q 010206 236 HINSISNN--SDGETFISA-DDLRINLWNLEISNQS-----------FNIVDVKPANMEDLTEVITSAEFH--PTHCNML 299 (515)
Q Consensus 236 ~v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~i~~~--p~~~~~l 299 (515)
.|+.|... -....|+.+ +||.|.+|.+++--.. ......+|.-.......+++++++ ... ++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 34444433 245566667 9999999976321000 000112332222345678999998 666 899
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-----CC-EEEEEcC-CeEEEEEe
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GR-HILSRDY-MTLKLWDI 370 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~-~l~s~~~-~~i~iwd~ 370 (515)
|+++....|.||-+....... .... -..|...|.+|.|-++ |. .+++++- |.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~-----~~~~--------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERF-----YHVP--------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccc-----cccc--------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999999999988765531110 0000 0114456889999763 22 4555554 89988888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.94 E-value=7.6 Score=35.85 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCeEEEEecC-CCCEEEEeCCCc------EEEEeCCCCC-cccceecccCccccccC--------CceEEEEEecCCCcE
Q 010206 235 YHINSISNNS-DGETFISADDLR------INLWNLEISN-QSFNIVDVKPANMEDLT--------EVITSAEFHPTHCNM 298 (515)
Q Consensus 235 ~~v~~~~~~~-~~~~l~s~~d~~------i~iwd~~~~~-~~~~~~~~~~~~~~~~~--------~~i~~i~~~p~~~~~ 298 (515)
+.+..+.+.+ ++.+++.++++. +..+++.... ....+.......+..-. .-.-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 6678899985 555555567776 6666655311 11111000001111111 133478887777 67
Q ss_pred EEEEecC------CeEEEEecCcccccccccceeeeccCCCcc---ccccccccceeEEEEccCCCEEEEEc------CC
Q 010206 299 LAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTR---SFFTEIIASISDIKFARNGRHILSRD------YM 363 (515)
Q Consensus 299 l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~s~~------~~ 363 (515)
+++.-.+ ..|..++.. +..... +..+...... ..-......+.+++++|+|+.|+++. ++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~----~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRR----FPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-Ccccce----EccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 7766666 788888866 544221 1111100000 01122346799999999999655431 21
Q ss_pred --e-------EEEEEeeC--CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 010206 364 --T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 415 (515)
Q Consensus 364 --~-------i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 415 (515)
. ++++.+.. .+++...+......... ......+..+.+-+++++|+
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~------~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPT------APGDNGISDIAALPDGRLLV 230 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCcccc------ccCCCCceeEEEECCCcEEE
Confidence 2 55655543 13334444333221000 00223456888888998776
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.5 Score=36.62 Aligned_cols=58 Identities=5% Similarity=-0.161 Sum_probs=34.8
Q ss_pred eEEEcCCCCEEEEecCC-------------------CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 404 ECCLSGDGGRVATGSYS-------------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~d-------------------g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.++|.|||.+.++-+.. |.|.-++...+ .. ..+.........+++++++.++++-..+
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~-~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG-KL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC-eE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 78999999876654421 34555555433 22 2222223334588999999888775544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.91 E-value=13 Score=38.57 Aligned_cols=120 Identities=10% Similarity=0.036 Sum_probs=65.9
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC--CC----EE
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GR----HI 357 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~----~l 357 (515)
+.++..+.+.+. ..++.++.++.+...++..+.+.....+.++ ..|.|+.++|- ++ ++
T Consensus 488 ~~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e---------------~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 488 GKITIGVVSANA-SQVVVAGGGLALFYLEIEDGGLREVSHKEFE---------------YEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred CceEEEEEeecc-eEEEEecCccEEEEEEeeccceeeeeeheec---------------ceeEEEecccCCCCCCcceEE
Confidence 344444555554 5777777778887777766553222222222 57999999973 32 66
Q ss_pred EEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 358 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 358 ~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+.|.. ..+.+.-...+...+..........+ ..+.-.+|-.|..+|.++..||.+..|-+..
T Consensus 552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iP-----------RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPDLILITHEQLSGEIIP-----------RSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEeecceEEEEEECCCcceeeeeccCCCccc-----------hheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 67754 33333322211222211111111111 1133567777788999999999988765543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.72 E-value=8.9 Score=36.11 Aligned_cols=234 Identities=13% Similarity=0.108 Sum_probs=95.4
Q ss_pred CCCEEEE-e-CCCcEEEEeCCCCCcccceecc-cCcccc--ccCCceEEEEEecCCCcEEEEEec------CCeEEEEec
Q 010206 245 DGETFIS-A-DDLRINLWNLEISNQSFNIVDV-KPANME--DLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDM 313 (515)
Q Consensus 245 ~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~--~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~~wd~ 313 (515)
+.++|+. | ..+.|++.|+.+.-...++... .+..+. ..-.....+-.-|+| .+++++-. .|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 4666776 5 7999999999854433332211 110111 111334455566787 67776532 245777776
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--------------------C-CeEEEEEeeC
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------Y-MTLKLWDINM 372 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------------------~-~~i~iwd~~~ 372 (515)
++.+.. ..++..... ..--..+-+.|..+.+++.+ . .++.+||+.+
T Consensus 165 ~tf~v~----g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 165 ETFEVK----GRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp TT--EE----EE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred cccccc----ceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 654432 222221110 01234455556555555421 2 5899999996
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCCEEEE-ecCCCcEEEEec-CCCCcce---eeec-----c
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVAT-GSYSNLFRVFGC-SEGSAES---TTLE-----A 440 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s-~s~dg~i~iw~~-~~~~~~~---~~~~-----~ 440 (515)
.+.++++.......- ...+.| .|+..+=++ +.-..+|..|-. ..+.... ..+. +
T Consensus 232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 888888875432110 123444 444554333 333444544433 3332111 1111 0
Q ss_pred C------------CCceeeEEECCCCCeeEe-ecCCCeEEEecCCCCCccccCCcc----------------ccccCCee
Q 010206 441 S------------KNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNA----------------FDFSMKLL 491 (515)
Q Consensus 441 ~------------~~~v~~~~~~~~~~~l~s-~~~d~~v~l~~~~~~~~~~~~~~~----------------~~~~~~i~ 491 (515)
- ..-++.+.+|.|.++|.. +-.+|.+|.++-..+....+.++. ....+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 233678899999998754 455899988333332222222110 01123347
Q ss_pred EEEEcCCCCEEEEEc
Q 010206 492 HLAWHPSENSIACAA 506 (515)
Q Consensus 492 ~~~~s~~~~~la~~~ 506 (515)
-+..|-||++|.+.+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 788999999998764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.50 E-value=2.5 Score=40.20 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=53.6
Q ss_pred cceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcccc
Q 010206 400 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 479 (515)
Q Consensus 400 ~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~ 479 (515)
+.|..+..++.|..++-.+.+|.+.++=.+..+.- ..++.....|++..++-+.+++.+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~-s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN-SEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcc-ceecCCCceEEEEeecccceeeccC-------------------
Confidence 45678889999999998888886655432222111 2344444445555555443333221
Q ss_pred CCccccccCCeeEEEEcCCC----CEEEEEcCCcEEEEe
Q 010206 480 NGNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY 514 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~----~~la~~~~~~~~i~~ 514 (515)
..-.+..++|+|+. ..++-.+++-+.+|+
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 12356888999976 345566677788876
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.35 E-value=8.3 Score=36.33 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCeEEEEecCCCCEEEEeC------------CC-cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEE
Q 010206 235 YHINSISNNSDGETFISAD------------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~ 301 (515)
.....|+|.++|+++++-. .+ .|.+++-..+.-..... ..+...-.....+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-
Confidence 4567899999999888741 12 67666543322111100 0111123345789999886 444
Q ss_pred EecCCeEEEEecCcccccc-cccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 302 SSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
+......++.|........ +....+..-... -..+......++|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 4444433344543221111 111111111000 0001234778999999987776
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.26 E-value=8.5 Score=34.78 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=76.6
Q ss_pred cceeEEEEccCCCEEEEEcCCeE-EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+.+..+..++||++++++..|.+ .-||-. +. ....|.... -..+.++.|+|++.+.+.+ ..|
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G---~~--~w~~~~r~~-----------~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPG---QT--TWQPHNRNS-----------SRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT----S--S-EEEE--S-----------SS-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCC---Cc--cceEEccCc-----------cceehhceecCCCCEEEEe-CCc
Confidence 67888889999999999988544 466643 11 122222110 0124589999998876654 778
Q ss_pred cEEEEecCCCCcceeeecc-------CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEA-------SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
.|++=+.... ..++.. ....+-.+++.+++...++|+....++=.++.+.++..... ......++.+.
T Consensus 208 ~~~~s~~~~~---~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~--~~~~~n~~~i~ 282 (302)
T PF14870_consen 208 QIQFSDDPDD---GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVG--ENVPSNLYRIV 282 (302)
T ss_dssp EEEEEE-TTE---EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGG--TTSSS---EEE
T ss_pred EEEEccCCCC---ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccc--cCCCCceEEEE
Confidence 8887662211 122222 22335688999988888877655444447777776422221 12356789999
Q ss_pred EcCCCCEEEEEcCCcEEE
Q 010206 495 WHPSENSIACAASNSLYM 512 (515)
Q Consensus 495 ~s~~~~~la~~~~~~~~i 512 (515)
|.++.+-++.|.+ |++|
T Consensus 283 f~~~~~gf~lG~~-G~ll 299 (302)
T PF14870_consen 283 FVNPDKGFVLGQD-GVLL 299 (302)
T ss_dssp EEETTEEEEE-ST-TEEE
T ss_pred EcCCCceEEECCC-cEEE
Confidence 9887777777764 4444
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.16 E-value=1 Score=38.57 Aligned_cols=79 Identities=9% Similarity=0.066 Sum_probs=52.2
Q ss_pred EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEe
Q 010206 291 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 370 (515)
Q Consensus 291 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~ 370 (515)
+..++ .++++-+.+|.+++||+.+++...........-...... -......|..+.++.+|.-+++-+.|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~--~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVS--DKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccc--cCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 44455 789999999999999999987654432111110000000 002346788999999999888877788888887
Q ss_pred eC
Q 010206 371 NM 372 (515)
Q Consensus 371 ~~ 372 (515)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 64
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.05 E-value=3.7 Score=43.01 Aligned_cols=153 Identities=8% Similarity=0.025 Sum_probs=86.7
Q ss_pred cceeEEEEccCCCEEEEEc---CCeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEEEcCCCCE-E
Q 010206 343 ASISDIKFARNGRHILSRD---YMTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 414 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~---~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 414 (515)
-+|..+...+|+...+... +-.|..||++..... ...+..+.-.. +.+.-..++.|.|.-.. .
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~---------ek~vf~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF---------EKPVFQLKNVWNPLVPLNS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh---------ccccccccccccCCccchh
Confidence 3566677777877666532 247889998741111 11111111100 00011236778775433 4
Q ss_pred EEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEE
Q 010206 415 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 494 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 494 (515)
+....|+.|++..+.........+ .-....++++|+|.|+.++.|-..|++.-+.-.-.....+..........|.++.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 556688999988776443332222 2345678999999999999999999876511000000011111111257899999
Q ss_pred EcCCCCEEEEE
Q 010206 495 WHPSENSIACA 505 (515)
Q Consensus 495 ~s~~~~~la~~ 505 (515)
|-....++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 99888888754
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.78 E-value=6.7 Score=36.75 Aligned_cols=128 Identities=9% Similarity=0.050 Sum_probs=74.8
Q ss_pred EEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 238 NSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
+.+-|+...+.|++...|.+.=|.+.....-. .+.--....++|.++.|++|. +.+|.--.+..|.+++....+
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDV-----piSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDV-----PISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCC-----CceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCc
Confidence 44556555666665555556666665443211 111112246799999999998 899999999999999984332
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeec
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
......... +..+..|....|+.. .-+|.-++..+.+|......+.++..+.+.
T Consensus 100 ~~l~~~~~c------------k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 100 SQLEYTQEC------------KTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred hhhHHHHHh------------ccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 211111111 112245888899854 566665554577777664344444444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.77 E-value=16 Score=36.83 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=36.7
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCC
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH 295 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~ 295 (515)
.+-.+.|+.+..+|+...+|++++|++-.......-+ ..+.....|..+.+..+|
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~sv-----g~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSV-----GFESQMSDIVECRFFHNG 139 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccccc-----ccccccCceeEEEEecCc
Confidence 7789999999988888899999999986332221000 112234456666666676
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.4 Score=33.70 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=101.1
Q ss_pred CcCCeEEEEecCCCCEEEE-e--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 233 HDYHINSISNNSDGETFIS-A--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
...-...+.|..++.++-+ | ....|+.+|+.+++.... ..+.+ ...--.++...+ .+....-.++...
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~------~~FgEGit~~~d--~l~qLTWk~~~~f 113 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP------RYFGEGITILGD--KLYQLTWKEGTGF 113 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT------T--EEEEEEETT--EEEEEESSSSEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc------cccceeEEEECC--EEEEEEecCCeEE
Confidence 3344567888778877776 4 366899999998764422 11111 112234555543 5666677899999
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+||..+.+...+ +.-. +.=..++ .|++.|+..+. ..|+++|..+ .+....+.......
T Consensus 114 ~yd~~tl~~~~~----~~y~-------------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~- 172 (264)
T PF05096_consen 114 VYDPNTLKKIGT----FPYP-------------GEGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGR- 172 (264)
T ss_dssp EEETTTTEEEEE----EE-S-------------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTE-
T ss_pred EEccccceEEEE----EecC-------------CcceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCE-
Confidence 999987665322 2211 2234455 45666666544 7999999875 56666665443221
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec---------------cCCCceeeEEECCC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------ASKNPMRRQVQTPS 453 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~ 453 (515)
.+..+..+.+- +|...|=.=....|...|..+|... ..+. ...+-.+.+|+.|.
T Consensus 173 ---------pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 173 ---------PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp ---------E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred ---------ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 11112355554 5655554445566777777776322 2111 11345788999876
Q ss_pred CCe-eEee
Q 010206 454 RPS-RPLG 460 (515)
Q Consensus 454 ~~~-l~s~ 460 (515)
... +++|
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 554 4443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.20 E-value=18 Score=34.82 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.3
Q ss_pred CCeEEEEecCCCCEEEEeC-CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC
Q 010206 235 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~ 294 (515)
...+.|+|.|++++|++-. .|.|++++....... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 5678999999999888875 699999986543321 1111111111113567899999987
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.98 E-value=2 Score=36.80 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=48.6
Q ss_pred ecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcccc-------ccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 242 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 242 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+..++++|++- .+|.+++||+.+.+....-..+.| -+. .....|..+.++.+| .-+++- .+|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNG-VPIVTL-SNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCC-CEEEEE-eCCCEEEecc
Confidence 34567777776 899999999998776544322222 111 356778899999888 555544 4578888887
Q ss_pred Ccc
Q 010206 314 RQS 316 (515)
Q Consensus 314 ~~~ 316 (515)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.55 E-value=20 Score=34.34 Aligned_cols=98 Identities=22% Similarity=0.279 Sum_probs=59.4
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
++..|.-.|.+.......+...+ .+. ......+..-..+| +++.++..|-|++||.-.-..
T Consensus 535 S~~svFrIDPR~~gNKi~v~esK--dY~-tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-------------- 595 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESK--DYK-TKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-------------- 595 (776)
T ss_pred cccceEEecccccCCceeeeeeh--hcc-ccccccccccccCc--eEEEecCCCceeeehhhcchh--------------
Confidence 66666666766544322221111 000 12222333333444 899999999999999532211
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcCCeEEEEEee
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 371 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~ 371 (515)
+..+.+....|..+..+.+|+++++.....+-+-|+.
T Consensus 596 --KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 596 --KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred --hhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1123444468999999999999988777788888875
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.3 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.4
Q ss_pred ceeeEEEcCCC------CEEEEecCCCcEEEEecCC
Q 010206 401 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 401 ~v~~~~~s~~~------~~l~s~s~dg~i~iw~~~~ 430 (515)
.+.+++|||-| .+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 46689999954 3788999999999998763
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=2.3 Score=39.56 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=58.0
Q ss_pred CCCEEEEe-CCCcEEEE-eCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 245 DGETFISA-DDLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+.-|..+ .||.|.-| |++..... .+.-.+ .+.-...++.-+.-..+. +-+++-+..|++.++.....+...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p-~l~h~R--~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~~~~lL-- 352 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQP-HLNHIR--NFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTSEKLLL-- 352 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCC-cceeee--ccccCcccceeecccccc-ceEEEEcCCCceeeeecccCccee--
Confidence 34456666 78888877 66544332 110000 111111222222222222 456666777777766543332211
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeC
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 372 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~ 372 (515)
+..--..+.-+++||.+.++++-+.|.++++.+++
T Consensus 353 ---------------~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 353 ---------------FERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ---------------hhhhhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 01111346678999999999998779999999985
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=88.78 E-value=27 Score=34.79 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred cCCC--cEEEEEecCCeEEEEecCccccc
Q 010206 293 PTHC--NMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 293 p~~~--~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37889999999999999999865
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.65 E-value=18 Score=39.01 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=52.9
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC-----ccccee-------cccC--cccc-ccCCceEEEEEecCCCcE
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEISN-----QSFNIV-------DVKP--ANME-DLTEVITSAEFHPTHCNM 298 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~-----~~~~~~-------~~~~--~~~~-~~~~~i~~i~~~p~~~~~ 298 (515)
...|+|+....+|+.|.+|.||.|.-.-..... .+.++. .+-| .++. .+.++|..++....- .+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~I 256 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NI 256 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ce
Confidence 356788888889999999966644322222111 010000 0011 1223 567899999998876 78
Q ss_pred EEEEecCCeEEEEecCc
Q 010206 299 LAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 299 l~~~~~dg~i~~wd~~~ 315 (515)
+.+-+..|.|..||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 99999999999999976
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.19 E-value=8.3 Score=32.42 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=63.7
Q ss_pred CEEEEecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCCeeEeecCC---C---eEEEecCCCCC-------cc
Q 010206 412 GRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRPSRPLGSLS---G---VVRRVKGADNS-------AL 477 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~---~v~l~~~~~~~-------~~ 477 (515)
+.|+.+...+.|.+|++.... .+..++..- +.|..+.++..|.+|++-=.+ . .+|++-.|... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455444666789999998433 333444433 788899999999999876333 2 45551122111 10
Q ss_pred ccCC---------------c--cccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 478 DANG---------------N--AFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 478 ~~~~---------------~--~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.+.+ . -+.....+.+++-.|-..-|++|+.+.+.||.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 0011 0 01124577899999988888999999999986
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.14 E-value=17 Score=36.54 Aligned_cols=64 Identities=6% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCEEEEe-CC------CcEEEEeCCC-CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC--eEEEEecC
Q 010206 245 DGETFISA-DD------LRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMR 314 (515)
Q Consensus 245 ~~~~l~s~-~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg--~i~~wd~~ 314 (515)
+++..+.| .+ ..+..||+++ .+... + ..+.........+++ ++ .+.+.|+.++ .+..||..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~-----~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-I-----TTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-c-----cccCcccccceeEEE--CC-EEEEEeeecceeehhhcCcc
Confidence 45666665 32 2467889886 33221 1 022222222222222 45 7899999888 67777777
Q ss_pred ccc
Q 010206 315 QSA 317 (515)
Q Consensus 315 ~~~ 317 (515)
+.+
T Consensus 534 ~~~ 536 (557)
T PHA02713 534 TYE 536 (557)
T ss_pred ccc
Confidence 654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.9 Score=40.84 Aligned_cols=100 Identities=4% Similarity=-0.029 Sum_probs=57.0
Q ss_pred ceeEEEEccCCCEEEEE-----cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 344 SISDIKFARNGRHILSR-----DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-----~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+..+.+||||++|+.+ ++ ..|++.|+.+ +..+........ ..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~~~~-----------------~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLDNVE-----------------PSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCccccCcc-----------------eEEEEeeCCCEEEEE
Confidence 46778899999999864 33 5788888875 432211111100 268999999877655
Q ss_pred cCC------CcEEEEecCCCCcc-eeeeccCCCcee-eEEECCCCCeeEeec
Q 010206 418 SYS------NLFRVFGCSEGSAE-STTLEASKNPMR-RQVQTPSRPSRPLGS 461 (515)
Q Consensus 418 s~d------g~i~iw~~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~~ 461 (515)
..+ ..|+.+++.++... ...++....... ....+.++++++..+
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 432 36788888876322 233333222232 333344676654433
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.93 E-value=20 Score=32.31 Aligned_cols=154 Identities=10% Similarity=0.115 Sum_probs=79.3
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCC-----cEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~-----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.|.+||+.+.+. .+.+.+.+.... ..+.+..+++....+ ...++=...+.|.++|+.+++...- ....-
T Consensus 35 KLv~~Dl~t~~l-i~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv----~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQL-IRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV----LHNSF 108 (287)
T ss_dssp EEEEEETTTTCE-EEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE----ETCGC
T ss_pred EEEEEECCCCcE-EEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE----ecCCc
Confidence 566777776653 333333322222 356678888876321 2333444456899999998764211 11111
Q ss_pred CCCc--ccc-c----cccccceeEEEEcc---CCCEEEEEcCCeEEEEEeeCC----CC---------CeeeEeeecccc
Q 010206 331 APGT--RSF-F----TEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SG---------PVATFQVHEHLR 387 (515)
Q Consensus 331 ~~~~--~~~-~----~~~~~~i~~~~~s~---~~~~l~s~~~~~i~iwd~~~~----~~---------~~~~~~~~~~~~ 387 (515)
.+.+ ..+ . -.....+..++.+| +++.|+-..-..-++|.+.+. .. .++.+ +....
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~- 186 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGS- 186 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCC-
Confidence 1110 000 0 01123477778876 777777654333455555430 00 01111 11000
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
..-.++++++|.++++--..+.|..|+...
T Consensus 187 -------------~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 -------------QSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp -------------SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred -------------CCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 012688999999999988999999999885
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.85 E-value=26 Score=35.26 Aligned_cols=57 Identities=7% Similarity=0.129 Sum_probs=34.4
Q ss_pred CCCEEEEecCCC-----cEEEEecCCCCcceee-eccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSN-----LFRVFGCSEGSAESTT-LEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg-----~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.+.+.|+.|+ +|..||..+.+..... +......+... .-+++..+.|+.||.-++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecccCcccc
Confidence 677777888776 3677888876544321 22222222222 236677888888887776
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=87.78 E-value=23 Score=32.80 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=38.2
Q ss_pred cceeEEEEcc-------CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 343 ASISDIKFAR-------NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 343 ~~i~~~~~s~-------~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
..+..+.|.. +|.++++.-. +.|....+...+........-. +.-..+..+++.|||.++
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------~~~~r~~~v~~~pDG~Ly 320 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG------------GFGGRPRDVAQGPDGALY 320 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT------------TSSS-EEEEEEETTSEEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc------------cCCCCceEEEEcCCCeEE
Confidence 5666777763 4556665543 7777777764222111111001 111124589999999998
Q ss_pred EEecCCCcEE
Q 010206 415 ATGSYSNLFR 424 (515)
Q Consensus 415 ~s~s~dg~i~ 424 (515)
++-+.+|.|+
T Consensus 321 v~~d~~G~iy 330 (331)
T PF07995_consen 321 VSDDSDGKIY 330 (331)
T ss_dssp EEE-TTTTEE
T ss_pred EEECCCCeEe
Confidence 8888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.71 E-value=17 Score=34.73 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=82.4
Q ss_pred cCCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC--------CCEEEEecCCC
Q 010206 352 RNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------GGRVATGSYSN 421 (515)
Q Consensus 352 ~~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~s~s~dg 421 (515)
.+..+|+. |.. ..++-.|+.. ++.+..+..+... -+.|.|+ .+.|+.-|. .
T Consensus 477 ~dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlvGlS~-~ 537 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLVGLSD-Y 537 (776)
T ss_pred CCcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEEeecc-c
Confidence 35556665 444 7788888886 8888888877654 3455554 234554444 4
Q ss_pred cEEEEecCCCCcceeeec----cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC
Q 010206 422 LFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 497 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 497 (515)
.|.-.|.+..+..+...+ .......+.. .-...++|.+|.-|-|||++--... ....+.+....|..+..+.
T Consensus 538 svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta 613 (776)
T COG5167 538 SVFRIDPRARGNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred ceEEecccccCCceeeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeec
Confidence 444445554433322221 1112222222 2345689999999999992211110 1112234678999999999
Q ss_pred CCCEEEEEcCCcEEEE
Q 010206 498 SENSIACAASNSLYMY 513 (515)
Q Consensus 498 ~~~~la~~~~~~~~i~ 513 (515)
+|++|.+.+.+-+.+-
T Consensus 614 ~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 614 NGKHILATCKNYLLLT 629 (776)
T ss_pred CCcEEEEeecceEEEE
Confidence 9999999988776653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=87.18 E-value=9.2 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.8
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~ 69 (515)
.....+.+++.+|++++.|+.+.-|+|.|+|+.++..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3456789999999999999988889999999987764
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.76 E-value=9.9 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred ceeEEEEEeecC---C-CcEEEeeeCCCeEEEEEccCC
Q 010206 113 EKINKIRWCQSA---N-SALYLLSTNDKTIKLWKVQEK 146 (515)
Q Consensus 113 ~~v~~l~~~~~~---~-~~~l~~~~~d~~i~iwd~~~~ 146 (515)
..|.+++|+|.. + +-+|++.+.++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999998832 2 346777799999999987743
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=86.75 E-value=26 Score=32.35 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=82.4
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe------EEEEecCcccccccccceeeeccCCCc-cccccccccceeEEEEccCCC
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~------i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~ 355 (515)
-+.+..+.+.|++ ..+++-+.+|. +..+++.........+........... -..+..-.-...+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 4567889998765 45566666666 555554431100000000000000000 000111112455778877888
Q ss_pred EEEEEcC-------CeEEEEEeeCCCCCeeeEeeeccccccc---cccccCCCccceeeEEEcCCCCEEEEecC-----C
Q 010206 356 HILSRDY-------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY-----S 420 (515)
Q Consensus 356 ~l~s~~~-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----d 420 (515)
++++... ..|.-++.. ++....+..+....... .....|.. .-+++++|||+.|+++.+ |
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECccccCC
Confidence 8777432 345555543 66666554333221111 11222333 338999999996665432 2
Q ss_pred C--c-------EEE--EecCCCCcce----eeecc-----CCCceeeEEECCCCCeeEe
Q 010206 421 N--L-------FRV--FGCSEGSAES----TTLEA-----SKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 421 g--~-------i~i--w~~~~~~~~~----~~~~~-----~~~~v~~~~~~~~~~~l~s 459 (515)
+ . +++ ||..+.+... ..+.. ....+..+.+.+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 1 444 5555422111 22222 3566788888899887654
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.12 Score=47.97 Aligned_cols=138 Identities=9% Similarity=0.053 Sum_probs=90.1
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE-EcC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~ 362 (515)
...-...|.|.+ .-++.++.+..+..||-..... .+ .. .++....++|..++..++. +..
T Consensus 35 v~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~-le------~n-----------~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 35 VGPIIHRWRPEG-HNLAVACANTIVIYYDKAGQVI-LE------LN-----------PTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred cccceeeEecCC-CceehhhhhhHHHhhhhhccee-cc------cC-----------CchhHhhhhhccccchhhhhhhc
Confidence 334566788887 5588888888899998544321 11 00 1134566788888877766 343
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+.+.+||+.+.....-.+.+.... .-+.|++....++.|...|.+.|++..+. ........|
T Consensus 96 ~~piylwd~n~eytqqLE~gg~~s~----------------sll~wsKg~~el~ig~~~gn~viynhgts-R~iiv~Gkh 158 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQLESGGTSSK----------------SLLAWSKGTPELVIGNNAGNIVIYNHGTS-RRIIVMGKH 158 (615)
T ss_pred CCCeeechhhhhhHHHHhccCcchH----------------HHHhhccCCccccccccccceEEEeccch-hhhhhhccc
Confidence 899999998522211111111110 03678998888999989999999998875 333445558
Q ss_pred CCceeeEEECCCCCee
Q 010206 442 KNPMRRQVQTPSRPSR 457 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l 457 (515)
...+.++++.+.+..+
T Consensus 159 ~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDYVI 174 (615)
T ss_pred ccceeEEEecccceee
Confidence 8889999998876544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.24 E-value=20 Score=30.55 Aligned_cols=97 Identities=6% Similarity=0.094 Sum_probs=63.1
Q ss_pred eeEEEEccCCCEEEEEcC--CeEEEEEeeCC-C-----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 345 ISDIKFARNGRHILSRDY--MTLKLWDINMD-S-----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
-+.++|+.+.+.+..-+. -.|.-||..-+ + +.+..++....... ...+ .+++..+|++.++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-----~~PD------Gm~ID~eG~L~Va 228 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-----LEPD------GMTIDTEGNLYVA 228 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-----CCCC------cceEccCCcEEEE
Confidence 467889888887776543 56767884321 1 22222222111100 0001 5677889998888
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
.-+.++|...|..+| +++++++-....+++.+|-..
T Consensus 229 ~~ng~~V~~~dp~tG-K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG-KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EecCcEEEEECCCCC-cEEEEEEcCCCceEEEEecCC
Confidence 888899999999998 565777777888999999543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.47 E-value=21 Score=33.72 Aligned_cols=103 Identities=11% Similarity=0.145 Sum_probs=63.3
Q ss_pred cceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 343 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
++|.++.||+|.+.||.- ++..|.+++... .++...+. |..... + ..|...+|+.. .-+|.-+..|
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-d~~~l~~~-~~ck~k-------~---~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-DNSQLEYT-QECKTK-------N---ANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-CchhhHHH-HHhccC-------c---ceeEEEEEecC-eeEEEEecCC
Confidence 689999999999999984 569999999853 22222111 110000 0 01447888855 4455544433
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
+-+|.....+..+...+.|.-.|+--++.++-+.++-
T Consensus 134 -~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 134 -IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred -eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 5666665444444556677777777788887765433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.86 E-value=48 Score=33.68 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=29.5
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~ 381 (515)
+.+..+..||+.++|+--.+ |.|.+-+.+. .+.+..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccC
Confidence 56788999999999998665 8888888875 55555554
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=84.27 E-value=58 Score=34.20 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred cCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce----ecccC-ccc--cc----cCCceEEEEEecCCCcEEEE
Q 010206 234 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI----VDVKP-ANM--ED----LTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----~~~~~-~~~--~~----~~~~i~~i~~~p~~~~~l~~ 301 (515)
...|.+++...-+..++.. +||+|.++|..+.+..... ..... .++ .+ .-..+..++|||++ ..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTM-CSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECccc-ceEEE
Confidence 4668888877777788888 9999999998877554332 00000 000 00 11234468899998 67777
Q ss_pred EecCCeEE
Q 010206 302 SSSKGSIR 309 (515)
Q Consensus 302 ~~~dg~i~ 309 (515)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=36 Score=31.59 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=58.0
Q ss_pred eeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCccc
Q 010206 402 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALD 478 (515)
Q Consensus 402 v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~~~ 478 (515)
+..+.+.|++.+++++.. |.+.. ....+...- .........++.+.+.++++.++.+ ..|.+++ .++...+...
T Consensus 175 ~~~i~~~~~g~~v~~g~~-G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSSR-GNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred EEEEEECCCCeEEEEeCC-ceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccc
Confidence 347888999877766554 54432 111221111 1122334677889999999877665 4677766 2344444211
Q ss_pred cCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 479 ANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 479 ~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
......-...+.++++.|++..++++...
T Consensus 252 -~~~~~~~~~~l~~v~~~~~~~~~~~G~~G 280 (334)
T PRK13684 252 -IIPEITNGYGYLDLAYRTPGEIWAGGGNG 280 (334)
T ss_pred -cCCccccccceeeEEEcCCCCEEEEcCCC
Confidence 10001112457899999988877766543
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.07 E-value=70 Score=34.95 Aligned_cols=38 Identities=11% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEccCCCEEEEEcC-CeE-EEEEeeCCCCCeeeEeeec
Q 010206 346 SDIKFARNGRHILSRDY-MTL-KLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i-~iwd~~~~~~~~~~~~~~~ 384 (515)
.+++++++|.+.++-+| ..| ++=.+.+ ...+..+.+..
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg~i~ilaGa~ 635 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLST-DGTISILAGAK 635 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEecc-CceEEEecCCC
Confidence 78899999988887555 322 2223333 23555555443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=84.06 E-value=29 Score=30.51 Aligned_cols=193 Identities=12% Similarity=0.104 Sum_probs=96.7
Q ss_pred ceEEEEECCCCCeEEeecCCC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 37 IISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
-...+.|..+|.++-+.+.-| .|+.+|+.+++... ...+... --
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~---------------------~~~l~~~-------------~F 91 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ---------------------SVPLPPR-------------YF 91 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE---------------------EEE-TTT---------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE---------------------EEECCcc-------------cc
Confidence 456678877888777777665 78999998876431 0111110 00
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
=..++.. . +..+...=.++...+||..+-+......+... .=-...||+.|
T Consensus 92 gEGit~~--~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E------------------GWGLt~dg~~L-------- 142 (264)
T PF05096_consen 92 GEGITIL--G-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE------------------GWGLTSDGKRL-------- 142 (264)
T ss_dssp EEEEEEE--T-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--------------------EEEECSSCE--------
T ss_pred ceeEEEE--C-CEEEEEEecCCeEEEEccccceEEEEEecCCc------------------ceEEEcCCCEE--------
Confidence 1112221 1 23333344678899999998776666554421 11223566666
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+....+..+.++| ..+.+. ........ ...-..++.+.+- +|...|=. ....|...|..++... ..+
T Consensus 143 ----i~SDGS~~L~~~d--P~~f~~---~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~i 211 (264)
T PF05096_consen 143 ----IMSDGSSRLYFLD--PETFKE---VRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWI 211 (264)
T ss_dssp ----EEE-SSSEEEEE---TTT-SE---EEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEE
T ss_pred ----EEECCccceEEEC--Ccccce---EEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEE
Confidence 6666667777766 221111 11111111 1112345566664 55544445 5667777788776532 222
Q ss_pred cccC---c-----cccccCCceEEEEEecCCCcEEEEEe
Q 010206 273 DVKP---A-----NMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 273 ~~~~---~-----~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
++.. . ......+-.+.||+.|...+++++|=
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2211 0 00111456789999998856666653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.90 E-value=32 Score=30.84 Aligned_cols=222 Identities=10% Similarity=0.075 Sum_probs=109.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc-----CcCCeEEEEecCCCC---
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-----HDYHINSISNNSDGE--- 247 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~--- 247 (515)
.++++|.+..- ++....+...+|| .......-........+.. .....+.+.|+....
T Consensus 27 Gia~~p~~~~W------------VadngT~~~TlYd--g~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v 92 (336)
T TIGR03118 27 GLSYRPGGPFW------------VANTGTGTATLYV--GNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVV 92 (336)
T ss_pred eeEecCCCCEE------------EecCCcceEEeec--CCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence 56777777554 6666777888888 3211000011111111111 123466666664322
Q ss_pred ----------EEEEeCCCcEEEEeCCCCCcc--cceecccCcccc-ccCCce-EEEEEecC--CCcEEEEEecCCeEEEE
Q 010206 248 ----------TFISADDLRINLWNLEISNQS--FNIVDVKPANME-DLTEVI-TSAEFHPT--HCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 248 ----------~l~s~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~i-~~i~~~p~--~~~~l~~~~~dg~i~~w 311 (515)
+|.+.+||+|.-|...-.... ...+ .+. .....| ..+++... +..+.++--..++|.+|
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~-----~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF 167 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEI-----VVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF 167 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcCCcccccccEE-----EEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe
Confidence 233448999999986432220 1111 111 112333 35565543 32344444558999999
Q ss_pred ecCcccccccccceeeeccCCC---cccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPG---TRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
|-.-.+... ...|..+..+. +..+ ....+ .|+-..-.++++.=+.|.. |.|.+||+. ++.++++.....
T Consensus 168 d~~f~~~~~--~g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~--G~l~~r~as~g~ 242 (336)
T TIGR03118 168 KGSFRPPPL--PGSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN--GQLLRRVASSGR 242 (336)
T ss_pred cCccccccC--CCCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCC--CcEEEEeccCCc
Confidence 865443211 11222221111 0000 00000 1122222233333333434 899999997 888888753332
Q ss_pred ccccccccccCCCccceeeEEEcC------CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
. ..-+.++..| .|.+|+---.||+|..||..++..+
T Consensus 243 L-------------NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 243 L-------------NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred c-------------cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 1 1123566544 4677777668999999999887544
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=83.49 E-value=42 Score=31.93 Aligned_cols=155 Identities=9% Similarity=0.089 Sum_probs=80.6
Q ss_pred eEEEEecCCCCEEEEeCCCcEE-EEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 237 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
...+..++++.+++.+..|.+. -||-- ....+.. . ......+.++.+.+++ .+++++ ..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~-~~~~~~l~~v~~~~dg-~l~l~g-~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----N-RASARRIQNMGWRADG-GLWLLT-RGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----c-CCCccceeeeeEcCCC-CEEEEe-CCceEEE-ecCC
Confidence 4456677888888888555543 34432 1110100 1 1124567899999988 666544 5566433 3333
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
+..- + ...|..... ..-...+.++.|.+++..+++|..|.+....- .++.-..........
T Consensus 310 G~~~-~-~~~f~~~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D--~G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTE-E-DFDFEEADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTD--GGKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCcc-c-ccceeeccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--CCcceeEccccCCCC--------
Confidence 3210 0 001111110 00113588999999999999998886665532 244333322111100
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
.. .+.+.|.++++.+++| .+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 11 2378888777766654 55766544
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.05 E-value=0.34 Score=45.24 Aligned_cols=134 Identities=12% Similarity=0.071 Sum_probs=84.5
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-C
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-D 253 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~ 253 (515)
...|.+.+..+ +.++.+..+..|| ..+ .........+....++|+-++..++. + .
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD-----~ag------q~~le~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD-----KAG------QVILELNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh-----hhc------ceecccCCchhHhhhhhccccchhhhhhhc
Confidence 45666777766 7788888888777 111 00001123355667888888887776 4 6
Q ss_pred CCcEEEEeCCCCCcccceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.+.+.+||+.+.... .++. ....-.=+.|++.. ..++.|...|.+.+|+..+.+....
T Consensus 96 ~~piylwd~n~eytq---------qLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv----------- 154 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQ---------QLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIV----------- 154 (615)
T ss_pred CCCeeechhhhhhHH---------HHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhh-----------
Confidence 899999999865432 1111 11111126788877 7788888999999999877543211
Q ss_pred CccccccccccceeEEEEccCCCEEE
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
...|...+.++++.+.+..+.
T Consensus 155 -----~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 155 -----MGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred -----hcccccceeEEEecccceeee
Confidence 122667788888888665544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=40 Score=33.97 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=30.8
Q ss_pred CCCEEEEecCC------CcEEEEecCC-CCcce-eeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 410 DGGRVATGSYS------NLFRVFGCSE-GSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 410 ~~~~l~s~s~d------g~i~iw~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
++++.+.|+.+ ..+..||..+ .+... ..+..........++ +++..+.|+.|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~ 524 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESY 524 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecce
Confidence 56666667654 2467899886 43332 333333333333333 6788888888873
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.96 E-value=31 Score=37.32 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.6
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~ 69 (515)
-......++|+|...++|.|...|.|++|-...-+.
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence 334567899999999999999999999998765443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.12 E-value=4.9 Score=41.05 Aligned_cols=178 Identities=11% Similarity=0.128 Sum_probs=88.4
Q ss_pred eccCcCCeEEEEecC-CCCEEEEeCCCcEEEEeCCC--CCcccceecccCccccccCCceEEEEEe---cCCCcEEEEEe
Q 010206 230 AHAHDYHINSISNNS-DGETFISADDLRINLWNLEI--SNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSS 303 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~-~~~~l~s~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~i~~i~~~---p~~~~~l~~~~ 303 (515)
.++..+.|-.+.|-. +...+. -.-|.+.+||+.- ++...++. +.+. ......+.-+.|. ++. .++-.+-
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~-v~~~--~p~gs~~~~V~wcp~~~~~-~~ic~~~ 202 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLE-VTPI--TPYGSDPQLVSWCPIAVNK-VYICYGL 202 (1283)
T ss_pred HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceE-Eeec--CcCCCCcceeeeccccccc-ceeeecc
Confidence 356667777777732 111111 1236778888753 22221111 1111 1112223444444 444 5666677
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE-----------EEEccCCCEEEEE-cCCeEEEEEee
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD-----------IKFARNGRHILSR-DYMTLKLWDIN 371 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~s~~~~~l~s~-~~~~i~iwd~~ 371 (515)
.++.|++........ .. +.+|...+.. -.+||||..++.+ +||.++.|.+.
T Consensus 203 ~~~~i~lL~~~ra~~-----~l------------~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-----SL------------FRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHH-----HH------------HHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 788888876654321 11 2223222222 2378999999986 46888888775
Q ss_pred CCC----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcc
Q 010206 372 MDS----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAE 434 (515)
Q Consensus 372 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~ 434 (515)
-.+ +++...+.|+.. ++.|.+.++..+..| ++.+ -.++++++ .+..+++|.....+++
T Consensus 266 i~g~~~~rclhewkphd~~-p~vC~lc~~~~~~~v-~i~~---w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKH-PRVCWLCHKQEILVV-SIGK---WVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeccccHhhhhccCCCCCC-CceeeeeccccccCC-ccce---eEEEEecccCCcceeEeeccchhhh
Confidence 433 344555555532 233333332222211 1111 12455554 4567899987766555
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=80.41 E-value=71 Score=32.48 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=30.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~ 68 (515)
....-++++.-+|.|.-++.+..||.|++|++...+
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 345668899999999999999999999999986544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=80.20 E-value=57 Score=31.23 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=36.0
Q ss_pred EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc
Q 010206 248 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~ 315 (515)
+++.- -||.+.+++-+.---.. .+.. .--.-.+.|.+.. ..|++++.+..+.-|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~--------~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSR--------FLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEE--------EcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHHH
Confidence 34443 69999999876332111 1111 1112346777776 7899999999999887643
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.01 E-value=41 Score=29.57 Aligned_cols=178 Identities=14% Similarity=0.024 Sum_probs=98.4
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC---------
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--------- 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--------- 305 (515)
.....+...||+..-++-....|.-.|.++.+.. .+.+ ..+.-........|.+.| ++-+++...
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt--~f~l---p~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~ 177 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT--RFPL---PLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPAR 177 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCcccceE--Eeec---ccccCCCcccceeeCCCc-cEEEeeccccceecCccc
Confidence 3344566667766555532224444454433211 1111 122335567788899998 777776531
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+.|++|+...+ ..-+.|+..|+|..-++.-. +.|-..|... + .-..+....
T Consensus 178 ~~i~vfpaPqG--------------------------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~ 229 (353)
T COG4257 178 NVISVFPAPQG--------------------------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPN 229 (353)
T ss_pred CceeeeccCCC--------------------------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCC
Confidence 33444444333 24577889999998877432 4555556543 2 222222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 458 (515)
..... ...+-.+|.|+.-+|-...+.++.||..+.......|.+....-.++.+...++.-.
T Consensus 230 ~~~~g------------sRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 230 ALKAG------------SRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ccccc------------ccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 11110 114556778888888778889999988876655566666655555666655554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 515 | ||||
| 3dw8_B | 447 | Structure Of A Protein Phosphatase 2a Holoenzyme Wi | 1e-126 |
| >pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.83 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.78 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.76 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.73 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.72 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.7 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.65 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.62 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.58 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.56 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.56 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.53 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.51 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.5 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.46 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.45 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.45 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.43 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.42 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.39 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.38 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.36 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.3 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.3 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.29 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.29 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.28 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.25 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.2 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.19 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.1 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.09 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.06 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.99 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.99 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.97 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.93 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.92 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.89 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.89 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.85 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.82 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.81 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.77 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.76 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.65 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.63 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.61 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.61 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.6 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.59 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.58 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.55 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.48 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.47 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.39 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.35 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.29 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.25 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.25 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.23 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.2 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.2 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.14 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.14 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.12 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.09 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.09 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.08 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.08 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.03 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.01 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.96 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.96 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.91 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.9 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.87 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.83 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.83 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.81 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.68 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.65 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.6 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.53 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.51 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.46 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.46 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.44 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.36 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.36 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.35 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.34 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.27 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.24 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.22 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.17 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.13 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.07 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.01 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.75 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.63 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.6 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.42 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.17 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.15 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.93 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 95.84 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.78 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.77 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.76 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.72 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.62 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.54 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.25 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.24 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.14 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.68 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.56 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.32 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.97 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 90.53 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 88.2 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.6 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 86.46 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 85.96 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 85.27 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 82.64 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=397.56 Aligned_cols=440 Identities=14% Similarity=0.116 Sum_probs=307.3
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCc-cccCcccccccccCCccceee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG-QRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 93 (515)
..|++.. ........+|.+.|++++|+|||++||+|+.||.|+|||+.+++.... ...........++|+|+.+.+
T Consensus 42 ~l~~~~~---~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 42 YTVPVGS---LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEETTC---SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEecCCC---cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 3476643 112223458999999999999999999999999999999865432110 011112333467888877665
Q ss_pred eecccCCC------ccc---cccc-ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCC
Q 010206 94 TEFQSHEP------EFD---YLKS-LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (515)
Q Consensus 94 ~~~~~h~~------~~~---~~~~-~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 162 (515)
........ .++ .+.. ..|...|++++|+| ++. .|++++.|++|++||..+++.......+
T Consensus 119 ~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H------- 189 (611)
T 1nr0_A 119 AAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH------- 189 (611)
T ss_dssp EEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCC-------
T ss_pred EEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-------
Confidence 43221100 000 0011 13458899999965 444 6999999999999999887766554433
Q ss_pred CCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeee------ccCcCC
Q 010206 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYA------HAHDYH 236 (515)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~ 236 (515)
.+.|. +++|+|+|+.+ ++++.|+.|++|| +...+ +...+. .+|...
T Consensus 190 -~~~V~-------~v~fspdg~~l------------as~s~D~~i~lwd--~~~g~------~~~~~~~~~~~~~~h~~~ 241 (611)
T 1nr0_A 190 -TKFVH-------SVRYNPDGSLF------------ASTGGDGTIVLYN--GVDGT------KTGVFEDDSLKNVAHSGS 241 (611)
T ss_dssp -SSCEE-------EEEECTTSSEE------------EEEETTSCEEEEE--TTTCC------EEEECBCTTSSSCSSSSC
T ss_pred -cCceE-------EEEECCCCCEE------------EEEECCCcEEEEE--CCCCc------EeeeeccccccccccCCC
Confidence 23444 88999999998 9999999999999 43322 222211 279999
Q ss_pred eEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee-------------------------------ccc----Ccccc
Q 010206 237 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV-------------------------------DVK----PANME 280 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~-------------------------------~~~----~~~~~ 280 (515)
|.+++|+|++++|+++ .|++|++||+++++....+. +.. ...+.
T Consensus 242 V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEc
Confidence 9999999999999998 89999999998765332110 000 01346
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------------------------cceeeeccC--
Q 010206 281 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------------SKLFEEQEA-- 331 (515)
Q Consensus 281 ~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------------~~~~~~~~~-- 331 (515)
+|...|++++|+|++ ++|++++.|+.|++||+.++...... ++.++....
T Consensus 322 gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 322 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 799999999999999 89999999999999999876432110 000100000
Q ss_pred --------------------CCc-----------------cccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC
Q 010206 332 --------------------PGT-----------------RSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD 373 (515)
Q Consensus 332 --------------------~~~-----------------~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~ 373 (515)
+.. ......|...+.+++|+|+|++|++|+. ++|++||+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~- 479 (611)
T 1nr0_A 401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG- 479 (611)
T ss_dssp CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-
T ss_pred cccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-
Confidence 000 0000014456889999999999999875 9999999985
Q ss_pred CCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceee--eccCCCceeeEE
Q 010206 374 SGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT--LEASKNPMRRQV 449 (515)
Q Consensus 374 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~--~~~~~~~v~~~~ 449 (515)
... +.. ..|... |++++|+|||++|++++.|++|++|++.+....... +..|...|.+++
T Consensus 480 ~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 480 ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE
Confidence 322 122 344433 569999999999999999999999999873333332 445999999999
Q ss_pred ECCCCCeeEeecCCCeEEEecCCCCCccccC-Cccccc-cCCeeEEEEcCCCCEEEEEcC-CcEEEEeC
Q 010206 450 QTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDF-SMKLLHLAWHPSENSIACAAS-NSLYMYYA 515 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~-~~~~~~-~~~i~~~~~s~~~~~la~~~~-~~~~i~~~ 515 (515)
|+|++++|++|+.|++|++++-.... ... ....+| ...|.+++|+|+++ |++++. ..+.+|+.
T Consensus 544 fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 544 WSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTT--SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ECCCCCEEEEEECCCcEEEEECCCcc--cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 99999999999999999994322211 011 123357 78999999999998 776665 55999974
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=384.07 Aligned_cols=438 Identities=55% Similarity=0.918 Sum_probs=320.8
Q ss_pred ccccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccce
Q 010206 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (515)
Q Consensus 12 ~~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (515)
..+.+|+|.|+|++. ..++.|.+.|++++|+|+|++||+|+.||.|+||++.+++... ....++++
T Consensus 7 ~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~~ 72 (447)
T 3dw8_B 7 GNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEYN 72 (447)
T ss_dssp -CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCEE
T ss_pred CcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------ccccccee
Confidence 467789999999974 3468899999999999999999999999999999998765310 01123556
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|.++++++.++.+...|++++|+|..+..+|++++.|++|++||+.+++..... .....
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~------------- 138 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE------------- 138 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC--------------
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC-------------
Confidence 6788999999999999999999999999976543368999999999999999876543211 11000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
.+|... .......+.+.. +...+......+.+.+..+|...|.+++|+|++++|++
T Consensus 139 ---------~~g~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 139 ---------EDGRYR-------------DPTTVTTLRVPV--FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp -----------------------------CCCCCSCCCCE--EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ---------cccccc-------------CcccccceEecc--ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 001000 000000001000 00011111123344445789999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 252 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
|.|+.|++||+++......++..++..+.+|...|.+++|+|+++.+|++|+.||.|++||+++++........+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866655555555666788899999999999997679999999999999999998765554566666655
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
+.....+.+|...|.+++|+|++++|++++++.|++||+++.++++..+..|......++..+..+++++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55555667777899999999999999998779999999986578889999998776666667777777777789999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCee
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 491 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 491 (515)
++|++|+.||.|++||+.+++. ..++.+..+.......+..+....+... ........+.+...|.
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKRK------------KDEISVDSLDFNKKIL 420 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCCC------------TTCEEGGGCCTTSCCC
T ss_pred CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCcc------------cccccccccccCCcee
Confidence 9999999999999999998733 3667776665544444433332222111 1112223445678999
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 492 HLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 492 ~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
+++|+|++++||+++.+++++|++
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEEC
T ss_pred EEEECCCCCEEEEEecceeeeecc
Confidence 999999999999999999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=386.12 Aligned_cols=418 Identities=14% Similarity=0.145 Sum_probs=291.5
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..+.+.+.+++|+|||++||+++ ++.|+||++.+++. ...+.+|.
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~-----------------------~~~~~~h~----------- 59 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS----------- 59 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS-----------
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCccc-----------------------CeEecCCC-----------
Confidence 35678889999999999999997 56999999876553 25678888
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|++++| ++++++|++++.|++|++||+.+++.........+ .+.|. .++|+|+|+.+.....
T Consensus 60 -~~v~~~~~--spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~------~~~v~-------~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 60 -HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF------SGPVK-------DISWDSESKRIAAVGE 123 (611)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS------SSCEE-------EEEECTTSCEEEEEEC
T ss_pred -CceEEEEE--CCCCcEEEEEeCCCCEEEeECCCCcceeeEeeccc------CCceE-------EEEECCCCCEEEEEEC
Confidence 88999999 56788999999999999999975432221111111 12233 5566666554421100
Q ss_pred ----------------------c----------CCCC-CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeE
Q 010206 192 ----------------------C----------ASND-SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHIN 238 (515)
Q Consensus 192 ----------------------~----------~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (515)
+ .... .+++++.|+.+++|| ... .++... +.+|...|.
T Consensus 124 ~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd--~~~------~~~~~~-l~~H~~~V~ 194 (611)
T 1nr0_A 124 GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPP------FKFKST-FGEHTKFVH 194 (611)
T ss_dssp CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE--TTT------BEEEEE-ECCCSSCEE
T ss_pred CCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE--CCC------CeEeee-eccccCceE
Confidence 0 0011 358899999999999 322 223333 478999999
Q ss_pred EEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 239 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
+++|+|++++|+++ .|++|++||+.+++....+.. ......+|.+.|.+++|+|++ .+|++++.|+.|++||+++++
T Consensus 195 ~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-TTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc-ccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc
Confidence 99999999999998 899999999987654322100 001122799999999999999 899999999999999998876
Q ss_pred cccccc----------------------------ceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEE
Q 010206 318 LCDTHS----------------------------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLW 368 (515)
Q Consensus 318 ~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iw 368 (515)
...... +.++.. .......+.+|...|.+++|+|+|++|++++. ++|++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W 351 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 432110 001100 00112345689999999999999999999875 999999
Q ss_pred EeeCCCCCeeeE-eeeccccccc-------------------------------------------cccccCC-------
Q 010206 369 DINMDSGPVATF-QVHEHLRPKL-------------------------------------------CDLYEND------- 397 (515)
Q Consensus 369 d~~~~~~~~~~~-~~~~~~~~~~-------------------------------------------~~~~~~~------- 397 (515)
|+.+ ++....+ ..|...+..+ ..+..++
T Consensus 352 d~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 352 DIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp ETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred ECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 9875 3332221 1111000000 0000000
Q ss_pred ----------------CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 398 ----------------SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 398 ----------------~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.-..+.+++|+|||++|++|+.|++|++||+.++........+|...|.+++|+|++++|++++
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEc
Confidence 0123568999999999999999999999999865322222368999999999999999999999
Q ss_pred CCCeEEEecCCCCCccccCCc-cc-cccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 462 LSGVVRRVKGADNSALDANGN-AF-DFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 462 ~d~~v~l~~~~~~~~~~~~~~-~~-~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.|++|++++..... +.... .. .|...|.+++|+||+++||+++.|+ +.+|+.
T Consensus 511 ~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 511 QSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp TTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 99999993322111 11111 22 3889999999999999999988655 899973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=370.54 Aligned_cols=358 Identities=18% Similarity=0.293 Sum_probs=291.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|...|.+++|+|+|++|++++.|+.|++|+.... ....+.+|.
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------------------------~~~~~~~~~---------- 262 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------------------------LLQTLTGHS---------- 262 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------------------------EEEEEecCC----------
Confidence 4578999999999999999999999999999996422 334567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++| .+++..+++++.|+.|++|+..... ......+ .+.+. .++++|+++.+
T Consensus 263 --~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h--------~~~v~-------~~~~~~~~~~l---- 318 (577)
T 2ymu_A 263 --SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH--------SSSVW-------GVAFSPDGQTI---- 318 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcE-EEEEecC--------CCCeE-------EEEECCCCCEE----
Confidence 88999999 5567899999999999999976543 3332222 23344 78999999998
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
++++.++.+++|| .... .... +.+|...|.+++|+|+++.|+++ .|+.|++||.. .+..
T Consensus 319 --------~t~~~d~~i~~w~--~~~~-------~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~- 378 (577)
T 2ymu_A 319 --------ASASDDKTVKLWN--RNGQ-------HLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL- 378 (577)
T ss_dssp --------EEEETTSCEEEEE--TTSC-------EEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-
T ss_pred --------EEEeCCCeEEEEe--CCCC-------eeEE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-
Confidence 9999999999999 3221 1122 46889999999999999999998 89999999964 3222
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++.. . .+.+|...|.+++
T Consensus 379 -------~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~----~------------~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 379 -------QTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLL----Q------------TLTGHSSSVWGVA 433 (577)
T ss_dssp -------EEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEE----E------------EEECCSSCEEEEE
T ss_pred -------EEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEE----E------------EecCCCCCeEEEE
Confidence 1557799999999999999 899999999999999963 3221 1 1456778999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||.. ++.+..+.+|... |.+++|+|++++|++++.|+.|++||.
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 9999999999865 999999974 6777888777654 569999999999999999999999996
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
. + .....+.+|..+|++++|+|++++|++++.|+.|++++ ..+ +......+|...|++++|+||+++|++++.|
T Consensus 497 ~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd---~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D 570 (577)
T 2ymu_A 497 N-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570 (577)
T ss_dssp T-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC---TTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred C-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe---CCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 4 3 56688999999999999999999999999999999943 221 2233445799999999999999999988865
Q ss_pred c-EEEEe
Q 010206 509 S-LYMYY 514 (515)
Q Consensus 509 ~-~~i~~ 514 (515)
+ +++|+
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 5 88995
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=366.15 Aligned_cols=370 Identities=17% Similarity=0.271 Sum_probs=284.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|+|++|||||++||+|+.|+.|+|||.. ++ .+..+.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~-----------------------~~~~l~gh~---------- 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ-----------------------LLQTLTGHS---------- 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC-----------------------EEEEEECCS----------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC-----------------------EEEEEeCCC----------
Confidence 45899999999999999999999999999999953 33 345688898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc-
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN- 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~- 189 (515)
..|++++| ++++++|++++.|++|++||+... .......+. +.+. .++|+|+++.+...
T Consensus 58 --~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~-~~~~~~~~~--------~~v~-------~~~~s~d~~~l~~~~ 117 (577)
T 2ymu_A 58 --SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--------SSVR-------GVAFSPDGQTIASAS 117 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCS--------SCEE-------EEEECTTSSEEEEEE
T ss_pred --CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCC-EEEEEECCC--------CCEE-------EEEECCCCCEEEEEc
Confidence 88999999 557889999999999999997543 333322211 1121 33333333322110
Q ss_pred ---------------------------------------------------------------------cccCCCCCCCC
Q 010206 190 ---------------------------------------------------------------------FGCASNDSSFP 200 (515)
Q Consensus 190 ---------------------------------------------------------------------~~~~~~~~~~~ 200 (515)
.......++++
T Consensus 118 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197 (577)
T ss_dssp TTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE
Confidence 00011234577
Q ss_pred CCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccc
Q 010206 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 279 (515)
Q Consensus 201 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 279 (515)
++.++.+++|| .. . +.... +.+|...|.+++|+|++++|+++ .|+.|++||... +.. ..+
T Consensus 198 ~~~d~~v~~w~--~~---~----~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~--------~~~ 258 (577)
T 2ymu_A 198 ASDDKTVKLWN--RN---G----QLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLL--------QTL 258 (577)
T ss_dssp EETTSEEEEEC--TT---S----CEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEE--------EEE
T ss_pred EcCCCEEEEEe--CC---C----cEEEE-EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEE--------EEE
Confidence 88888888888 21 1 12222 46899999999999999999998 899999999753 222 155
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 280 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 280 ~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.+|...|.+++|+|++ ..|++++.|+.|++||.... .. ..+.+|...|.+++|+|++++|++
T Consensus 259 ~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~~-~~----------------~~~~~h~~~v~~~~~~~~~~~l~t 320 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNGQ-LL----------------QTLTGHSSSVWGVAFSPDGQTIAS 320 (577)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSC-EE----------------EEECCCSSCEEEEEECTTSSEEEE
T ss_pred ecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCc-EE----------------EEEecCCCCeEEEEECCCCCEEEE
Confidence 7799999999999998 89999999999999996432 21 124567789999999999999999
Q ss_pred EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 360 RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 360 ~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
++. +.|++||+. ...+..+..|... +.+++|+|++++|++++.|+.|++|+.. + .....+
T Consensus 321 ~~~d~~i~~w~~~--~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~ 381 (577)
T 2ymu_A 321 ASDDKTVKLWNRN--GQHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTL 381 (577)
T ss_dssp EETTSCEEEEETT--SCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEE
T ss_pred EeCCCeEEEEeCC--CCeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEe
Confidence 875 999999976 5566666666544 5589999999999999999999999965 3 566788
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.+|..++.+++++|++++|++++.|+.|++++. . .+......+|...|++++|+||+++|++++.++ +.+|+
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~---~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---N-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT---T-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC---C-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999999432 1 122223446889999999999999999888665 78886
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-44 Score=327.15 Aligned_cols=283 Identities=14% Similarity=0.218 Sum_probs=240.4
Q ss_pred ccccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccc
Q 010206 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (515)
..+|.+.|.+++|+|+ +++|++|+.|+.|+||++.+++.. ....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------LQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------EEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------eeeeeccCC------
Confidence 3589999999999985 679999999999999998765421 334578888
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..|.+++|+ +++.++++++.|++|++||+.+++....
T Consensus 81 ------~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~~~~~~~~~----------------------------------- 117 (321)
T 3ow8_A 81 ------LGVVSVDIS--HTLPIAASSSLDAHIRLWDLENGKQIKS----------------------------------- 117 (321)
T ss_dssp ------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEE-----------------------------------
T ss_pred ------CCEEEEEEC--CCCCEEEEEeCCCcEEEEECCCCCEEEE-----------------------------------
Confidence 889999995 5567999999999999999988764332
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+..|...+.+++|+|++++|+++ .|+.|++||+++.
T Consensus 118 -------------------------------------------~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 118 -------------------------------------------IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp -------------------------------------------EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred -------------------------------------------EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 12445667789999999999999 8999999999877
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+..|...|.+++|+|++ ++|++|+.|+.|++||+++++... .+.+|..+|
T Consensus 155 ~~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~----------------~~~~h~~~v 209 (321)
T 3ow8_A 155 KKEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLH----------------TLEGHAMPI 209 (321)
T ss_dssp SEEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCC
T ss_pred ceeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEE----------------EEcccCCce
Confidence 6543 445678889999999999 899999999999999999876532 145677899
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|+|++++|++|+. +.|++||++. .+....+.+|... |.+++|+|++++|++++.|++|+
T Consensus 210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~ 273 (321)
T 3ow8_A 210 RSLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVK 273 (321)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEE
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEE
Confidence 99999999999999876 9999999986 7778888877755 56999999999999999999999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.++ ..+.++.+|...|.+++|+|+++.|++++.|+.|++
T Consensus 274 iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 274 VWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999987 455788999999999999999999999999999999
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-44 Score=339.17 Aligned_cols=281 Identities=17% Similarity=0.249 Sum_probs=245.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|++++|++|+.||.|+|||+.+++. ...+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~-----------------------~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EEEEeccC----------
Confidence 458999999999999999999999999999999987763 35678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+ +++.+|++|+.|++|++||+.+++....
T Consensus 151 --~~V~~v~~~--~~~~~l~sgs~D~~i~iwd~~~~~~~~~--------------------------------------- 187 (410)
T 1vyh_C 151 --DSVQDISFD--HSGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------- 187 (410)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCCCEEETTSSCEEEC---------------------------------------
T ss_pred --CcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCCceeEE---------------------------------------
Confidence 889999995 5677999999999999999876542211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|++| .|++|++||++++....
T Consensus 188 ---------------------------------------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 188 ---------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp ---------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---------------------------------------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 35788899999999999999998 89999999998776442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...|.++.|+|++ .+|++|+.|+.|++||++++.... .+.+|...|.+++
T Consensus 229 --------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~----------------~~~~h~~~v~~~~ 283 (410)
T 1vyh_C 229 --------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKA----------------ELREHRHVVECIS 283 (410)
T ss_dssp --------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEEEEE
T ss_pred --------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceee----------------EecCCCceEEEEE
Confidence 567899999999999998 899999999999999998875421 2456778999999
Q ss_pred EccC--------------------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 350 FARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 350 ~s~~--------------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
|+|+ +.+|++|+. +.|++||+++ +.++..+.+|... |.+++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 347 (410)
T 1vyh_C 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFH 347 (410)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEEC
T ss_pred EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEc
Confidence 9996 678999875 9999999986 7888888888765 5599999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++|+.|++|++
T Consensus 348 ~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 348 SGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999999877 455789999999999999999999999999999999
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=318.13 Aligned_cols=284 Identities=17% Similarity=0.202 Sum_probs=238.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++|++|+.||.|+|||+.+++. ...+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-----------------------~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-----------------------VRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-----------------------eEEeeccC----------
Confidence 458999999999999999999999999999999987653 35567777
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| ++++|++++.|++|++||+.+++....
T Consensus 56 --~~v~~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------- 92 (304)
T 2ynn_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (304)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEEeC--CCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 7899999965 567999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|++| .|++|++||+++.....
T Consensus 93 ---------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 93 ---------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred ---------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence 35788999999999999999998 89999999998664432
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .+.+|...|.+++|+|+++.+|++|+.|+.|++||+++..... .+ ..+|...+..+.
T Consensus 134 ~-------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~----~~-----------~~~~~~~v~~~~ 191 (304)
T 2ynn_A 134 Q-------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF----TL-----------TTGQERGVNYVD 191 (304)
T ss_dssp E-------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE----EE-----------ECCCTTCEEEEE
T ss_pred h-------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc----ee-----------ccCCcCcEEEEE
Confidence 2 5678999999999999544899999999999999997764321 11 233446789999
Q ss_pred Ecc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 350 FAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 350 ~s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
|+| ++++|++|+. ++|++||+++ ++++.++.+|... |..++|+|++++|++|+.||.|++|
T Consensus 192 ~~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 192 YYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIW 255 (304)
T ss_dssp ECCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEE
Confidence 987 7789999875 9999999996 7888889888765 5589999999999999999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCC--eeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~l 468 (515)
|+.++ .....+..|...+.+++++|++. ++++|+.||.+.+
T Consensus 256 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 256 NSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp ETTTC-CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred ECCCC-ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99987 55688999999999999999875 5888888887766
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=324.37 Aligned_cols=287 Identities=14% Similarity=0.200 Sum_probs=236.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.++|++++|+||+++|++|+.||.|+|||..+++. ...+..|.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------------------~~~~~~~~--------- 97 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS--------- 97 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------------------ceEeecCC---------
Confidence 3458999999999999999999999999999999876653 34556676
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.+|++++.|+.|++|++.+.+....
T Consensus 98 ---~~v~~~~~s--~~~~~l~s~~~d~~v~iw~~~~~~~~~~-------------------------------------- 134 (340)
T 1got_B 98 ---SWVMTCAYA--PSGNYVACGGLDNICSIYNLKTREGNVR-------------------------------------- 134 (340)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTCEEEEEETTTCSBSCE--------------------------------------
T ss_pred ---ccEEEEEEC--CCCCEEEEEeCCCeEEEEECccCCCcce--------------------------------------
Confidence 779999995 5677999999999999999876431000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
.. ..+.+|...|.++.|++++. ++++ .|++|++||+++++..
T Consensus 135 -----------------------------------~~-~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~ 177 (340)
T 1got_B 135 -----------------------------------VS-RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQT 177 (340)
T ss_dssp -----------------------------------EE-EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEE
T ss_pred -----------------------------------eE-EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEE
Confidence 00 01357889999999999886 5555 8999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... .+.+|...|.++
T Consensus 178 ~--------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~----------------~~~~h~~~v~~v 232 (340)
T 1got_B 178 T--------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAI 232 (340)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEE----------------EECCCSSCEEEE
T ss_pred E--------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEE----------------EEcCCcCCEEEE
Confidence 2 567899999999999998 899999999999999998875421 256677899999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|++++|++|+. +.|++||++. .+.+..+..+. ....|.+++|+|+|++|++|+.||.|++||
T Consensus 233 ~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 233 CFFPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDN-------------IICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTT-------------CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCC-------------cccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 99999999999875 9999999986 55554443211 112366999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++ .....+.+|..+|.+++++|++++|++|+.|+.|++
T Consensus 299 ~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 299 ALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 9877 455789999999999999999999999999999998
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=363.18 Aligned_cols=404 Identities=12% Similarity=0.093 Sum_probs=279.5
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+||+..+.+.. .. ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-----------------------~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-----------------------IK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-----------------------EE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-----------------------EE-cCCC----------
Confidence 4589999999999999999999999999999997654321 11 2244
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| +++|++++.|++|++||+.+++........ +.+. +++|+|+++.+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---------~~V~-------~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---------GKIT-------SIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS---------SCEE-------EEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC---------CCEE-------EEEECCCCCEE----
Confidence 7799999976 559999999999999999998766554321 3344 88999999999
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccce--ee---eeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGC--RR---IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLE 263 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~ 263 (515)
++++.+|.|++|| +....... ... .. ....+|...|.+++|+|+ +..|++| .|+.| +||++
T Consensus 114 --------~sgs~dg~V~lwd--~~~~~~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYD--IDRDQLSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp --------EEEETTSCEEEEE--TTTTEEEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred --------EEEcCCCcEEEEE--CCCCcccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 9999999999999 44322110 000 00 123679999999999996 4678888 89999 99998
Q ss_pred CCCcccceecc-c---C------ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc------------
Q 010206 264 ISNQSFNIVDV-K---P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------ 321 (515)
Q Consensus 264 ~~~~~~~~~~~-~---~------~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------ 321 (515)
+.+....+... . + .....|...|.+++|+|++ .+|++|+.||.|++||+++++.+..
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~ 260 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCC
Confidence 76543221100 0 0 0123456889999999998 8999999999999999977653210
Q ss_pred ----------c--cc-------------------------------eee-ec----------------------------
Q 010206 322 ----------H--SK-------------------------------LFE-EQ---------------------------- 329 (515)
Q Consensus 322 ----------~--~~-------------------------------~~~-~~---------------------------- 329 (515)
. +. .+. .+
T Consensus 261 ~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 340 (902)
T 2oaj_A 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP 340 (902)
T ss_dssp TTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS
T ss_pred CcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC
Confidence 0 00 000 00
Q ss_pred -c------------CC-----------------Ccc------------------ccccccccceeE--------------
Q 010206 330 -E------------AP-----------------GTR------------------SFFTEIIASISD-------------- 347 (515)
Q Consensus 330 -~------------~~-----------------~~~------------------~~~~~~~~~i~~-------------- 347 (515)
. .+ ... ..+..|...|++
T Consensus 341 ~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~ 420 (902)
T 2oaj_A 341 TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420 (902)
T ss_dssp SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHH
T ss_pred CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHH
Confidence 0 00 000 000111123333
Q ss_pred --------------------EEEccCCCEEEEEcC-CeEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceee
Q 010206 348 --------------------IKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 348 --------------------~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
++|+|++++|++|+. ++|++||+.. +... ..+..... .......-..|++
T Consensus 421 ~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l~------~~~~~~h~~~V~s 493 (902)
T 2oaj_A 421 LSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNLS------RTLNKAKELAVDK 493 (902)
T ss_dssp HHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEHH------HHTTCSSSCCEEE
T ss_pred HhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeech------hhcCCCCCCceeE
Confidence 445688999999875 9999999986 3321 11211000 0000011123679
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCc--------------------------------------------ceeeecc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSA--------------------------------------------ESTTLEA 440 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~--------------------------------------------~~~~~~~ 440 (515)
++|+|||++||+|+.||+|++|++.+++. ...++.+
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 99999999999999999999999986521 2467788
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccc--cCCccc-cccCCeeEEEEc-----CCC---CEEEEEcCCc
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD--ANGNAF-DFSMKLLHLAWH-----PSE---NSIACAASNS 509 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~--~~~~~~-~~~~~i~~~~~s-----~~~---~~la~~~~~~ 509 (515)
|..+|++++|+|+| +||+|+.|++|++++.....-.. ...... +|...|++++|+ ||| ++|++++.|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999999 99999999999994432211000 001222 688899999999 886 8999888665
Q ss_pred -EEEEe
Q 010206 510 -LYMYY 514 (515)
Q Consensus 510 -~~i~~ 514 (515)
+.+|+
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 88886
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=321.94 Aligned_cols=295 Identities=15% Similarity=0.139 Sum_probs=225.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|...|.+++|+|||++|++++ |+++++||........... .|...... ....+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~------------~~~~~~~~------------~~~~~ 81 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA------------APNEGFCS------------AGVQT 81 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG------------TTCGGGCS------------EEEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc------------cCCcceee------------eeecc
Confidence 45778899999999999999887 6678888743211000000 00000001 11122
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
+..|++++|+| + ..|++++.||+|++||+.+++......
T Consensus 82 ~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------------------------- 120 (344)
T 4gqb_B 82 EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSK-------------------------------------- 120 (344)
T ss_dssp SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------
T ss_pred CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEee--------------------------------------
Confidence 37799999965 3 479999999999999998875322211
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
....+|...|++++|+|++++|++| .|++|++||+++++...
T Consensus 121 ------------------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~- 163 (344)
T 4gqb_B 121 ------------------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS- 163 (344)
T ss_dssp ------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred ------------------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 0135899999999999999999998 89999999998776442
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+.+|...|++++|+|++..+|++++.|+.|++||+++++.... +. ...|...+.+++|
T Consensus 164 -------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----~~----------~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 164 -------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----IG----------CSAPGYLPTSLAW 222 (344)
T ss_dssp -------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----CC--------------CCCEEEEEE
T ss_pred -------EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee----ee----------cceeeccceeeee
Confidence 56789999999999999867899999999999999998764321 11 1233456899999
Q ss_pred cc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCCcEEEEe
Q 010206 351 AR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFG 427 (515)
Q Consensus 351 s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg~i~iw~ 427 (515)
+| ++++|++|+. +.|++||+++ ++++.++.+|... |++++|+|++ ++|++|+.|++|++||
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred cCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 99 4667888765 9999999997 8889999988765 5699999998 5799999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
+.++ . ...+.+|...|++++|+|+++. |++++.|++|++
T Consensus 287 ~~~~-~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 287 SSLS-E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp TTCC-E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCC-c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 9876 3 3567899999999999999875 679999999999
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=324.30 Aligned_cols=289 Identities=16% Similarity=0.183 Sum_probs=225.5
Q ss_pred cccccceEEEEECCCCCeEEeecC------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
..|.+.|++++|||||++||+|+. |+.|++|+..++... ..+.....+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------------~~~~~~~~~~~----- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------------ESLCTAGVQTE----- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------------------GGGCSEEEECS-----
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------------------eeEecccCCCC-----
Confidence 469999999999999999999987 788999987765432 11222334455
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|++++|+| ++ .+++++.||+|++||+.+++......
T Consensus 95 -------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~-------------------------------- 132 (357)
T 4g56_B 95 -------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK-------------------------------- 132 (357)
T ss_dssp -------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC--------------------------------
T ss_pred -------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe--------------------------------
Confidence 7899999965 44 57788999999999998765221100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
....+|...|.+++|+|++++|+++ .|+.|++||+++
T Consensus 133 ------------------------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 133 ------------------------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp ------------------------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred ------------------------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 0025788999999999999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
++... .+.+|...|++++|+|++..++++++.|+.|++||+++++.... + .+..|...
T Consensus 171 ~~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~----~----------~~~~~~~~ 228 (357)
T 4g56_B 171 KAVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR----I----------DFCASDTI 228 (357)
T ss_dssp TEEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB----C----------CCTTCCSC
T ss_pred CcEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee----e----------eecccccc
Confidence 65442 56789999999999999856899999999999999988764321 1 12345578
Q ss_pred eeEEEEccC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC-CEEEEecCCC
Q 010206 345 ISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~s~dg 421 (515)
+.+++|+|+ +.+|++|+. +.|++||+++ ++++..+.+|... |++++|+|++ ++|++|+.|+
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEEEECSSSSCCEEEEETTS
T ss_pred ccchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEEEEcCCCCCEEEEEeCCC
Confidence 999999997 567888765 9999999986 7888888877755 5699999987 5799999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECC-CCCeeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~l 468 (515)
+|+|||++++ +.. ...+|..+|++++|+| ++++|++++.||+|++
T Consensus 293 ~i~iwd~~~~-~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 293 TVAVLDADFS-EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp CEEEECTTSC-EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEEECCCC-cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 9999999977 333 4458999999999998 7899999999999999
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=313.29 Aligned_cols=291 Identities=16% Similarity=0.202 Sum_probs=237.4
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
+...+.+|. +.|.+++|+|. .++.+|++|+.|++|++|++..++....
T Consensus 24 ~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------ 73 (321)
T 3ow8_A 24 LFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------ 73 (321)
T ss_dssp EEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------
T ss_pred eeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------
Confidence 334567787 89999999764 3467999999999999999876542111
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
|. +.+|...|.+++|++++.++
T Consensus 74 ----------------------------------------~~------------------l~gh~~~v~~~~~~~~~~~l 95 (321)
T 3ow8_A 74 ----------------------------------------WS------------------LEGHQLGVVSVDISHTLPIA 95 (321)
T ss_dssp ----------------------------------------EE------------------ECCCSSCEEEEEECSSSSEE
T ss_pred ----------------------------------------ee------------------eccCCCCEEEEEECCCCCEE
Confidence 00 46889999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 250 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++ .|++|++||+++++... .+..|...+.+++|+|++ ++|++|+.|+.|++||+++++... .
T Consensus 96 ~s~s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~----~--- 159 (321)
T 3ow8_A 96 ASSSLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEY----S--- 159 (321)
T ss_dssp EEEETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEE----E---
T ss_pred EEEeCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeE----E---
Confidence 998 89999999998776443 445677889999999999 899999999999999998875421 1
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
+..|...|.+++|+|++++|++|+. +.|++||+++ ++++..+.+|... |.+++|
T Consensus 160 ---------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~ 214 (321)
T 3ow8_A 160 ---------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMP---------------IRSLTF 214 (321)
T ss_dssp ---------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------CCEEEE
T ss_pred ---------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCc---------------eeEEEE
Confidence 3345578999999999999999875 9999999986 7788888877654 459999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
+|++++|++|+.|+.|++||++++ .....+.+|...|.+++|+|++++|++++.|++|++++ ....+......+|.
T Consensus 215 spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd---~~~~~~~~~~~~h~ 290 (321)
T 3ow8_A 215 SPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD---VGTRTCVHTFFDHQ 290 (321)
T ss_dssp CTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTTTEEEEEECCCS
T ss_pred cCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe---CCCCEEEEEEcCCC
Confidence 999999999999999999999977 45578999999999999999999999999999999933 22222223344688
Q ss_pred CCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 488 MKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
..|.+++|+|++++|++++.|+ +.+|+.
T Consensus 291 ~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999888665 889973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=316.21 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=236.8
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|++++||+|+.||.|+|||..+++. ...+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----------------------~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----------------------EHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------EEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----------------------ceEEecCC---------
Confidence 3568999999999999999999999999999999876553 23455565
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.++++++.|+.+++|++........
T Consensus 107 ---~~v~~~~~s--p~g~~lasg~~d~~i~v~~~~~~~~~~~-------------------------------------- 143 (354)
T 2pbi_B 107 ---TWVMACAYA--PSGCAIACGGLDNKCSVYPLTFDKNENM-------------------------------------- 143 (354)
T ss_dssp ---SCCCEEEEC--TTSSEEEEESTTSEEEEEECCCCTTCCS--------------------------------------
T ss_pred ---CCEEEEEEC--CCCCEEEEeeCCCCEEEEEEeccccccc--------------------------------------
Confidence 679999994 5677999999999999999864320000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
..... .+.+|...|.+++|+|++..|+++ .|++|++||+++++..
T Consensus 144 ---------------------------------~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~ 189 (354)
T 2pbi_B 144 ---------------------------------AAKKK-SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL 189 (354)
T ss_dssp ---------------------------------GGGCE-EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ---------------------------------cccce-eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE
Confidence 00001 135788999999999999999998 8999999999877644
Q ss_pred cceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
. .+.+|...|.+++|+|+ + ++|++|+.||.|++||+++++... .+.+|...|.
T Consensus 190 ~--------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~~----------------~~~~h~~~v~ 244 (354)
T 2pbi_B 190 Q--------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCVQ----------------AFETHESDVN 244 (354)
T ss_dssp E--------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEEE----------------EECCCSSCEE
T ss_pred E--------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEEE----------------EecCCCCCeE
Confidence 2 56789999999999884 4 799999999999999999876421 1456778999
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
+++|+|++++|++|+. ++|++||++. .+.+..+..+.. ...+.+++|+|++++|++|+.|+.|++
T Consensus 245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 245 SVRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 9999999999999875 9999999985 544444432221 123568999999999999999999999
Q ss_pred EecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 426 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
||+.++ .....+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 311 wd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 311 WDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 999887 455788999999999999999999999999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.82 Aligned_cols=392 Identities=13% Similarity=0.179 Sum_probs=284.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-----------------------~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-----------------------LLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------------------EEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEeccCC----------
Confidence 347999999999999999999999999999999987763 35677888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC--cccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG--CGER 188 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~--~l~~ 188 (515)
..|.+++|+ +++.+|++++.|++|++||+.+++.......+ .+.+. .++|+|++. .+
T Consensus 658 --~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~~l-- 716 (1249)
T 3sfz_A 658 --DEVLCCAFS--SDDSYIATCSADKKVKIWDSATGKLVHTYDEH--------SEQVN-------CCHFTNKSNHLLL-- 716 (1249)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSCCEE--
T ss_pred --CCEEEEEEe--cCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcEE-------EEEEecCCCceEE--
Confidence 889999994 56789999999999999999999877665543 23344 788888544 44
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++++.++.|++|| +... .+... +.+|...|.+++|+|+++.|+++ .|+.|++||+.+.+.
T Consensus 717 ----------~sg~~d~~v~vwd--~~~~------~~~~~-~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 717 ----------ATGSNDFFLKLWD--LNQK------ECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp ----------EEEETTSCEEEEE--TTSS------SEEEE-ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred ----------EEEeCCCeEEEEE--CCCc------chhhe-ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence 8899999999999 4332 23333 46899999999999999999998 899999999976543
Q ss_pred cccee------------------------------------------cccC-----ccccccCCceEEEEEecCCCcEEE
Q 010206 268 SFNIV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 268 ~~~~~------------------------------------------~~~~-----~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
...+. +... ....+|...|.+++|+|++ .+++
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 856 (1249)
T 3sfz_A 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAV 856 (1249)
T ss_dssp EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEE
T ss_pred cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEE
Confidence 22110 0000 0112678889999999998 8999
Q ss_pred EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC----
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG---- 375 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~---- 375 (515)
+++.|+.|++||+.++.... .+.+|...|.+++|+|++++|++++. +.|++||+.....
T Consensus 857 ~~~~dg~v~vwd~~~~~~~~----------------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRLKVA----------------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp EECSSSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred EEeCCCeEEEEEcCCCceee----------------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999998875422 14566678888888888888888764 8888888542000
Q ss_pred ------------------------CeeeEee----------------------------eccccccccccc-------cC
Q 010206 376 ------------------------PVATFQV----------------------------HEHLRPKLCDLY-------EN 396 (515)
Q Consensus 376 ------------------------~~~~~~~----------------------------~~~~~~~~~~~~-------~~ 396 (515)
....... .....-.+.+.. ..
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0000000 000000000000 00
Q ss_pred CCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC---------------------------------------cceee
Q 010206 397 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------------------------------AESTT 437 (515)
Q Consensus 397 ~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~---------------------------------------~~~~~ 437 (515)
..-..|.+++|+|+|++|++++.||.|++||+.++. .....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEE
Confidence 111235678888888888888888888888876541 12244
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
+.+|...+.+++++|+++++++++.|++|++++-. .........+|...|++++|+||+++||+++.++ +.+|+.
T Consensus 1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEES
T ss_pred EcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC---CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 56788899999999999999999999999993322 1122233446889999999999999999998765 888863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=371.17 Aligned_cols=419 Identities=14% Similarity=0.173 Sum_probs=305.8
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
..|++... .......+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ...
T Consensus 640 ~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~~ 693 (1249)
T 3sfz_A 640 QVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LVH 693 (1249)
T ss_dssp EEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEE
T ss_pred EEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eEE
Confidence 45666541 1122334799999999999999999999999999999998776 335
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.+.+|. ..|.+++|+|..++.++++++.|+.|++||+.+++.......+ .+.+.
T Consensus 694 ~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--------~~~v~------ 747 (1249)
T 3sfz_A 694 TYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--------TNSVN------ 747 (1249)
T ss_dssp EEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--------SSCEE------
T ss_pred EEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--------CCCEE------
Confidence 677887 8899999987667778999999999999999998866655433 23344
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccccccc---------------------------------
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNL--------------------------------- 221 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--------------------------------- 221 (515)
.++|+|+++.+ ++++.++.|++|| +.......
T Consensus 748 -~~~~sp~~~~l------------~s~s~dg~v~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 748 -HCRFSPDDELL------------ASCSADGTLRLWD--VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp -EEEECSSTTEE------------EEEESSSEEEEEE--GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred -EEEEecCCCEE------------EEEECCCeEEEEe--CCCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 78999999998 9999999999999 43321100
Q ss_pred ---------------ccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 222 ---------------VAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 222 ---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
..........+|...|.+++|+|+++.++++ .|+.|++||+.+..... .+.+|...
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~--------~~~~h~~~ 884 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA--------DCRGHLSW 884 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE--------EECCCSSC
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee--------ecCCCccc
Confidence 0011122234788999999999999999999 89999999998765442 56789999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCcccccc---------------------------------------------
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--------------------------------------------- 320 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--------------------------------------------- 320 (515)
|.+++|+|++ ..|++++.|+.|++||+.+.....
T Consensus 885 v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1249)
T 3sfz_A 885 VHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963 (1249)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred eEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence 9999999998 899999999999999976421100
Q ss_pred -------------------cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE
Q 010206 321 -------------------THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 321 -------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~ 380 (515)
..+..++... ......+.+|...|.+++|+|+|++|++++. +.|++||+.+ ++... +
T Consensus 964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~ 1040 (1249)
T 3sfz_A 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-L 1040 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-C
T ss_pred EEEEEEcCCCCEEEEEcCCCCEEEEEcCC-CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-E
Confidence 0011111110 1112335678899999999999999999875 9999999875 32221 1
Q ss_pred eeeccccccc-------------------ccccc-------CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 381 QVHEHLRPKL-------------------CDLYE-------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 381 ~~~~~~~~~~-------------------~~~~~-------~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..|...+..+ .+... ......|++++|+|++++|++++.||.|++||+.++. .
T Consensus 1041 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-~ 1119 (1249)
T 3sfz_A 1041 QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-P 1119 (1249)
T ss_dssp BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-C
T ss_pred ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-e
Confidence 1111111000 00000 0011236689999999999999999999999999874 5
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC--CCCCccc----cCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALD----ANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~--~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
...+.+|..+|++++|+|++++|++++.||.|++++- .+..... .......|...|++++|+||+++|++++ +
T Consensus 1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g 1198 (1249)
T 3sfz_A 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-G 1198 (1249)
T ss_dssp SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-S
T ss_pred eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-C
Confidence 5788999999999999999999999999999999332 2111100 0001135788999999999999999887 6
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
.+.+|+
T Consensus 1199 ~v~vwd 1204 (1249)
T 3sfz_A 1199 YLKWWN 1204 (1249)
T ss_dssp SEEEBC
T ss_pred eEEEEE
Confidence 799986
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=321.49 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=238.7
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+| ++.+|++++.|++|++||+.+++....
T Consensus 101 ~~~l~gh~------------~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~~~~~~~--------------------- 145 (410)
T 1vyh_C 101 KYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT--------------------- 145 (410)
T ss_dssp SCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE---------------------
T ss_pred eEeecccC------------CcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEE---------------------
Confidence 34566777 8999999954 567999999999999999987652211
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+.+|...|.+++|+|++++|++|
T Consensus 146 ---------------------------------------------------------l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 146 ---------------------------------------------------------LKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp ---------------------------------------------------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EeccCCcEEEEEEcCCCCEEEEE
Confidence 35788999999999999999998
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.|++|++||+.+.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++....
T Consensus 169 s~D~~i~iwd~~~~~~~~--------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~----------- 228 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVK----------- 228 (410)
T ss_dssp ETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE-----------
T ss_pred eCCCeEEEEeCCCCceeE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence 89999999998665432 567899999999999998 899999999999999999876421
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.+.+|...|.++.++|++++|++|+. +.|++||+.+ ++....+..|... |.+++|+|+
T Consensus 229 -----~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~ 287 (410)
T 1vyh_C 229 -----TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPE 287 (410)
T ss_dssp -----EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCS
T ss_pred -----EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCc
Confidence 24567789999999999999999875 9999999986 7777788777755 458899886
Q ss_pred --------------------CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 411 --------------------GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 411 --------------------~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+.+|++|+.|+.|++||+.++ .....+.+|...|.+++|+|++++|++|+.|+.|++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 679999999999999999987 45578899999999999999999999999999999943
Q ss_pred CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 471 GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
. ...........|...|++++|+|++++|++++.|+ +.+|.
T Consensus 367 ~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 367 Y---KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp C---TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred C---CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 21122233446889999999999999999888665 88886
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=306.62 Aligned_cols=288 Identities=17% Similarity=0.199 Sum_probs=233.4
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. +.|++++|+ +++.+|++++.||+|++||+.+++....
T Consensus 5 ~~~~~~~h~------------~~V~~~~fs--p~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFH--PTEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEEC--SSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 445677887 889999995 5677999999999999999987653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|...|.+++|+|++++|++
T Consensus 51 ----------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 51 ----------------------------------------------------------IQVTETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp ----------------------------------------------------------EECCSSCEEEEEEEGGGTEEEE
T ss_pred ----------------------------------------------------------eeccCCcEEEEEEeCCCCEEEE
Confidence 2456788999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
| .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++....
T Consensus 73 ~s~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~---------- 133 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE---------- 133 (304)
T ss_dssp EETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEE----------
T ss_pred ECCCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchh----------
Confidence 8 89999999999876543 567899999999999998 899999999999999998763221
Q ss_pred CCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+.+|...|.+++|+| ++.+|++|+. ++|++||+.. ..+...+.. +... +..++|
T Consensus 134 -----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~ 192 (304)
T 2ynn_A 134 -----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDY 192 (304)
T ss_dssp -----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEE
T ss_pred -----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEE
Confidence 12567788999999999 6789999875 9999999986 444444432 2222 347788
Q ss_pred cC--CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc
Q 010206 408 SG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+| ++++|++|+.|+.|++||++++ ....++++|...+..++|+|++++|++|+.||+|++++.. ..+.......
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---~~~~~~~~~~ 268 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---TYKVEKTLNV 268 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECC
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---CCceeeeccC
Confidence 76 7889999999999999999987 5568899999999999999999999999999999994322 2122223334
Q ss_pred ccCCeeEEEEcCCCC--EEEEEcCCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSEN--SIACAASNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~--~la~~~~~~~~i~~~ 515 (515)
+...+.+++|+|++. ++|++.++++.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp SSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred CCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 678899999999985 689999999999863
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=336.23 Aligned_cols=386 Identities=12% Similarity=0.121 Sum_probs=288.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
...|.+.|++++|+|+|++||+++ ++.|+||++.++.. .......+.+|.
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~---------- 63 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG---------- 63 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT----------
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC----------
Confidence 347899999999999999999998 78999999986610 001335678887
Q ss_pred ccce-eEEEEEeecCCCcEEEeeeCCCeEEEEEccCC------eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 111 IEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 111 ~~~~-v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
.. |++++|+|..++++|++++.|++|++||+.++ +.........+ .+.+. .++|+|++
T Consensus 64 --~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~~~~s~~~ 128 (615)
T 1pgu_A 64 --SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPIS-------DISWDFEG 128 (615)
T ss_dssp --TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEE-------EEEECTTS
T ss_pred --CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEE-------EEEEeCCC
Confidence 88 99999955226789999999999999999755 22222222211 23344 88999999
Q ss_pred CccccccccCCCCCCCCCCCc----ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcE
Q 010206 184 GCGERNFGCASNDSSFPPGGV----SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRI 257 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i 257 (515)
+.+ ++++.+ +.+.+|| . ...... +.+|...|.+++|+|+++ .|+++ .|+.|
T Consensus 129 ~~l------------~~~~~~~~~~~~v~~~d--~--------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 129 RRL------------CVVGEGRDNFGVFISWD--S--------GNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp SEE------------EEEECCSSCSEEEEETT--T--------CCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred CEE------------EEeccCCCCccEEEEEE--C--------CCccee-eecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence 998 777666 7888887 1 112222 478999999999999998 78887 89999
Q ss_pred EEEeCCCCCcccceecccCccccccCC---ceEEEEEecC-CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
++||+.+.+... .+.+|.. .|.+++|+|+ + ++|++++.|+.|++||+++++.... +
T Consensus 186 ~vwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~------- 245 (615)
T 1pgu_A 186 VFYQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKY----I------- 245 (615)
T ss_dssp EEEETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEE----C-------
T ss_pred EEEeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEE----e-------
Confidence 999998665432 4567888 9999999999 8 8999999999999999988764321 1
Q ss_pred cccccc---ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee--------------------------
Q 010206 334 TRSFFT---EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH-------------------------- 383 (515)
Q Consensus 334 ~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~-------------------------- 383 (515)
.. .|...|.+++|+ ++++|++++. +.|++||+.+ ++.+..+..+
T Consensus 246 ----~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 319 (615)
T 1pgu_A 246 ----EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 319 (615)
T ss_dssp ----CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS
T ss_pred ----cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC
Confidence 02 567889999999 9999998765 9999999874 3333332222
Q ss_pred -------------------cccc-----------------------------------------ccc-----------cc
Q 010206 384 -------------------EHLR-----------------------------------------PKL-----------CD 392 (515)
Q Consensus 384 -------------------~~~~-----------------------------------------~~~-----------~~ 392 (515)
...+ ..+ .+
T Consensus 320 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 320 TLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred CEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 0000 000 00
Q ss_pred --------------------------------------------------------------------------------
Q 010206 393 -------------------------------------------------------------------------------- 392 (515)
Q Consensus 393 -------------------------------------------------------------------------------- 392 (515)
T Consensus 400 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 400 ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp EEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred cccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccc
Confidence
Q ss_pred --cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-CCCceeeEEECC----------CCCeeEe
Q 010206 393 --LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPL 459 (515)
Q Consensus 393 --~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~s 459 (515)
.........|++++|+|++++|++++.||.|++||+.++ .....+.+ |..++++++|+| ++++|++
T Consensus 480 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~ 558 (615)
T 1pgu_A 480 SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 558 (615)
T ss_dssp EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEE
Confidence 000011225778999999999999999999999999987 44566777 999999999999 9999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
++.||.|++++-.... .......+|...|++++|+|+++ |++++.++ +.+|+
T Consensus 559 ~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 559 GSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EcCCCcEEEEECCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999994332211 12223446889999999999999 88777655 88996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=310.50 Aligned_cols=306 Identities=15% Similarity=0.219 Sum_probs=229.7
Q ss_pred ccccc-ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~-~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.++... .......+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence 46777 9999999999999999999999999998765421 0111235777
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+ +++.+|++++.|+++++|++..+......
T Consensus 62 --~~v~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~~~~~~-------------------------------------- 99 (345)
T 3fm0_A 62 --RTVRKVAWS--PCGNYLASASFDATTCIWKKNQDDFECVT-------------------------------------- 99 (345)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSCEEEEEECCC-EEEEE--------------------------------------
T ss_pred --CcEEEEEEC--CCCCEEEEEECCCcEEEEEccCCCeEEEE--------------------------------------
Confidence 889999995 56789999999999999998765321110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|+|++++|+++ .|++|++||++......
T Consensus 100 -------------------------------------~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 100 -------------------------------------T-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp -------------------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred -------------------------------------E-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence 1 35788999999999999999998 89999999998654322
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+.... ...+.+|...|.+++
T Consensus 142 ~~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 142 CV-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLA 201 (345)
T ss_dssp EE-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEE
T ss_pred EE-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEE
Confidence 11 1456799999999999998 899999999999999987754210 112567889999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeee-ccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
|+|+|++|++++. ++|++||.............. ......+..+. ...-..|++++|+|++..|++++.|+.|++|+
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 9999999999875 999999986422211100000 00000000000 00111366999999999999999999999999
Q ss_pred cCCCCcc--------eeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 428 CSEGSAE--------STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
....... ...+.+|...|++++|+|+++ +|++|+.||+|++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 8764321 123468999999999999985 8999999999999
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=305.43 Aligned_cols=290 Identities=17% Similarity=0.210 Sum_probs=235.7
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
+....+.+|. ..|++++| ++++.+|++++.|++|++||+.+++....
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------- 92 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------- 92 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence 3456688888 88999999 55678999999999999999887653221
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
+..|...|.+++|+|++++|+
T Consensus 93 -----------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 93 -----------------------------------------------------------IPLRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp -----------------------------------------------------------EECSSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------------eecCCccEEEEEECCCCCEEE
Confidence 245678899999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++||+.+........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++...
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~--------- 178 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTT--------- 178 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE---------
T ss_pred EEeCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEE---------
Confidence 98 89999999998654322211 2567899999999999986 58999999999999998876432
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
.+.+|...|.+++|+|+++++++|+. +.|++||+++ +.+...+.+|... |.+++|+
T Consensus 179 -------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 235 (340)
T 1got_B 179 -------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFF 235 (340)
T ss_dssp -------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEEC
T ss_pred -------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEc
Confidence 25667789999999999999999875 9999999986 7788888877755 5699999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccc
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 486 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~ 486 (515)
|++++|++|+.||.|++||++++.. ...+. .+...+.+++|+|++++|++|+.|+.|++++.... .......+|
T Consensus 236 p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h 311 (340)
T 1got_B 236 PNGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGH 311 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcE-EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecC
Confidence 9999999999999999999997643 33333 33457999999999999999999999999443221 222234468
Q ss_pred cCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 487 SMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 487 ~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
...|.+++|+|++.+||+++.|+ +.||+
T Consensus 312 ~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999988665 88885
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=325.33 Aligned_cols=344 Identities=10% Similarity=0.152 Sum_probs=260.0
Q ss_pred cccccceEEEEECCCCC-eEEee----------cCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCC
Q 010206 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg----------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (515)
+.+...|.+++|+|+|+ +||+| +.||.|+||++.++... +.... ..|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-EecC
Confidence 45667899999999997 99999 88999999999876521 01111 1344
Q ss_pred CcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 101 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
..|++++| ++++.+|++++.|+.|++||+.+.....
T Consensus 68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~------------------------------ 103 (416)
T 2pm9_A 68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAI------------------------------ 103 (416)
T ss_dssp ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCC------------------------------
T ss_pred ------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccc------------------------------
Confidence 78999999 4567799999999999999987631000
Q ss_pred cCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEE
Q 010206 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRIN 258 (515)
Q Consensus 181 ~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~ 258 (515)
.... .+.+|...|.+++|+|+ +++|+++ .|+.|+
T Consensus 104 -------------------------------------------~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 104 -------------------------------------------NSMA-RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp -------------------------------------------CEEE-ECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred -------------------------------------------cchh-hccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 0000 13578899999999998 8899998 899999
Q ss_pred EEeCCCCC------cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 259 LWNLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 259 iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
+||+++.+ .... ......|...|.+++|+|++..+|++++.|+.|++||+++++... .+..+.
T Consensus 140 iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~-- 208 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI----HLSYTS-- 208 (416)
T ss_dssp BCBTTTTSSCTTTCCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE----EECCCC--
T ss_pred EEECCCCccccccccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce----EEeccc--
Confidence 99998776 2221 123467899999999999944899999999999999999876432 222111
Q ss_pred CccccccccccceeEEEEccCC-CEEEEEcC-C---eEEEEEeeCCCCCeeeEe-eeccccccccccccCCCccceeeEE
Q 010206 333 GTRSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...+|...|.+++|+|++ .+++++++ + .|++||++....++..+. +|... |.+++
T Consensus 209 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~ 269 (416)
T 2pm9_A 209 ----PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLD 269 (416)
T ss_dssp ----CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEE
T ss_pred ----cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEE
Confidence 013346789999999997 57888765 6 999999997446677776 66544 56999
Q ss_pred EcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeEEEecCCCCCccccC----
Q 010206 407 LSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN---- 480 (515)
Q Consensus 407 ~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~l~~~~~~~~~~~~---- 480 (515)
|+| ++++|++++.||.|++||++++ .....+..|..++.+++|+|++ .+|++++.|+.|++++-.........
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~ 348 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETE 348 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccc
Confidence 999 9999999999999999999987 4557889999999999999999 89999999999999332211100000
Q ss_pred ----------------------------CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 481 ----------------------------GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 481 ----------------------------~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.....+...+..++|+|||++||+++.++ +.||+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 349 TKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 00001566788999999999999998655 888863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=300.46 Aligned_cols=285 Identities=19% Similarity=0.334 Sum_probs=236.2
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|+|++||+|+.||.|+||+..+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 45899999999999999999999999999999987665 335567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++....
T Consensus 66 --~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------------- 102 (312)
T 4ery_A 66 --LGISDVAWS--SDSNLLVSASDDKTLKIWDVSSGKCLKT--------------------------------------- 102 (312)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CceEEEEEc--CCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999995 5677999999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 103 ---------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 143 (312)
T 4ery_A 103 ---------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143 (312)
T ss_dssp ---------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ---------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE
Confidence 24677889999999999999998 89999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++.... + ...+..++..++
T Consensus 144 --------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~----~-----------~~~~~~~~~~~~ 199 (312)
T 4ery_A 144 --------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKT----L-----------IDDDNPPVSFVK 199 (312)
T ss_dssp --------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEE----E-----------CCSSCCCEEEEE
T ss_pred --------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeE----E-----------eccCCCceEEEE
Confidence 456789999999999998 8999999999999999988754321 1 123346799999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||+.+ ++.+..+.+|..... .+......+++++|++|+.||.|++||+
T Consensus 200 ~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 200 FSPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKY------------CIFANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSS------------CCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred ECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceE------------EEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence 9999999999875 9999999986 777777776654321 0112333468899999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeec--CCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~l 468 (515)
.++ .....+.+|...+..++++|+++++++++ .|++|++
T Consensus 267 ~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 267 QTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred CCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 987 56688999999999999999999999986 6999998
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=304.61 Aligned_cols=298 Identities=14% Similarity=0.188 Sum_probs=233.2
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.++|++++|+|++ ++|++|+.|+.|++|++.+.... .......+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 45899999999999965 89999999999999998654321 112345678888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++.+|++++.|++|++||+.+++.......+ .+.+. +++|+|++..+
T Consensus 66 ---~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--- 122 (319)
T 3frx_A 66 ---HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVGH--------KSDVM-------SVDIDKKASMI--- 122 (319)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSCEE---
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--------CCcEE-------EEEEcCCCCEE---
Confidence 88999999 566789999999999999999999876655433 23444 78999999998
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC------CCEEEEe-CCCcEEEEeC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNL 262 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~-~d~~i~iwd~ 262 (515)
++++.|+.|++|| +.. .+... +.+|...|.++.|.|. +..|+++ .|+.|++||+
T Consensus 123 ---------~s~s~D~~i~vwd--~~~-------~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 123 ---------ISGSRDKTIKVWT--IKG-------QCLAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp ---------EEEETTSCEEEEE--TTS-------CEEEE-ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEET
T ss_pred ---------EEEeCCCeEEEEE--CCC-------CeEEE-EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEEC
Confidence 9999999999999 332 22223 4689999999999985 4478887 8999999999
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
++.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++... .+. +.
T Consensus 184 ~~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~----~~~-------------~~ 237 (319)
T 3frx_A 184 NQFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMY----TLS-------------AQ 237 (319)
T ss_dssp TTTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEE----EEE-------------CC
T ss_pred Ccchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE----Eec-------------CC
Confidence 8655332 567899999999999999 899999999999999998876432 222 12
Q ss_pred cceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 343 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
..|.+++|+|++.+|++++++.+++|++.. ...+..+..+..... ...-..+.+++|+|||++|++|+.||.
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~ 309 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNV 309 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCce
Confidence 579999999999999999887899999975 444444432211000 000112568999999999999999999
Q ss_pred EEEEecCCC
Q 010206 423 FRVFGCSEG 431 (515)
Q Consensus 423 i~iw~~~~~ 431 (515)
|++||+.++
T Consensus 310 i~vWd~~t~ 318 (319)
T 3frx_A 310 IRVWQVMTA 318 (319)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeec
Confidence 999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=313.00 Aligned_cols=307 Identities=17% Similarity=0.265 Sum_probs=228.3
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+..|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----------------------~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----------------------THAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----------------------EEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------------------ceEEecCC----------
Confidence 458999999999999999999999999999999877653 35567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC-ccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~-~l~~~ 189 (515)
..|.+++| ++++++|++++.|+.+++|++.+...... ............+.+. .+.|.|++. .+
T Consensus 109 --~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~-------~~~~~~~~~~~l--- 173 (380)
T 3iz6_a 109 --PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYAS-------SCQYVPDQETRL--- 173 (380)
T ss_dssp --TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCC-------CCBCCSSSSSCE---
T ss_pred --CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceE-------EEEEecCCCCEE---
Confidence 77999999 55678999999999999999975421100 0000000001122232 667777643 45
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
++++.|+.|++|| +...+... .....+..+|...|.+++|++ ++.+|++| .|++|++||++....
T Consensus 174 ---------~s~s~D~~i~~wd--~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 174 ---------ITGSGDQTCVLWD--VTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240 (380)
T ss_dssp ---------EEECTTSCEEEEC--TTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC
T ss_pred ---------EEECCCCcEEEEE--cCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc
Confidence 8999999999999 44322111 011111257899999999987 78899998 899999999985443
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... .+...... ...+...|.+
T Consensus 241 ~~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~----~~~~~~~~-----~~~~~~~v~~ 303 (380)
T 3iz6_a 241 AVR-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQ----VYNREPDR-----NDNELPIVTS 303 (380)
T ss_dssp CCE-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEE----EECCCCSS-----SCCSSCSCSE
T ss_pred ceE-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEE----Eecccccc-----cccccCceEE
Confidence 322 567899999999999998 899999999999999999876532 22211100 1123346899
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE----eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
++|+|+|++|++|+. |.|++||+.. ++.+..+ .+|... |.+++|+|+|++|++|+.|+.
T Consensus 304 ~~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGR---------------ISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp EEECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCC---------------CCEEEECSSSSEEEEECTTSC
T ss_pred EEECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCc---------------eEEEEECCCCCEEEEeeCCCC
Confidence 999999999999875 9999999985 6655555 334433 559999999999999999999
Q ss_pred EEEEecCCC
Q 010206 423 FRVFGCSEG 431 (515)
Q Consensus 423 i~iw~~~~~ 431 (515)
|++|++...
T Consensus 368 i~iW~~~~~ 376 (380)
T 3iz6_a 368 LKIWAFSGH 376 (380)
T ss_dssp EEEEECCSS
T ss_pred EEEEecCCC
Confidence 999999855
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=314.33 Aligned_cols=342 Identities=15% Similarity=0.180 Sum_probs=253.7
Q ss_pred cccccccceEEEEECCCCC-eEEeecCCCeEEEEEc----ccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
....|.++|++++|+|+|+ +||+|+.||.|++|++ .+++..-.+ .+...+...+.+|.
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~---- 102 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-------------TIIAELRHPFALSA---- 102 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-------------EEEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc-------------cccccccccccccc----
Confidence 3456779999999999999 9999999999999999 665520000 00001111122210
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
....+...|++++|+ +++.+|++++.|+.|++||. +++....
T Consensus 103 --~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~i~~~-~~~~~~~--------------------------------- 144 (425)
T 1r5m_A 103 --SSGKTTNQVTCLAWS--HDGNSIVTGVENGELRLWNK-TGALLNV--------------------------------- 144 (425)
T ss_dssp -------CBCEEEEEEC--TTSSEEEEEETTSCEEEEET-TSCEEEE---------------------------------
T ss_pred --cccCCCCceEEEEEc--CCCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------------
Confidence 000112789999995 56789999999999999993 3221110
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
+..|...|.+++|+|++++|+++ .|+.|++||++
T Consensus 145 ---------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 145 ---------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp ---------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred ---------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 24677899999999999999998 89999999998
Q ss_pred CCCcccceecccCccccccCCc---------------eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 264 ISNQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~---------------i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++... .+..+... +.+++|+|++ .+++++.++.|++||+++++...
T Consensus 180 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~-------- 241 (425)
T 1r5m_A 180 SGTVMQ--------HFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTG-------- 241 (425)
T ss_dssp TTEEEE--------EECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSE--------
T ss_pred CCcEEE--------EeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceee--------
Confidence 765443 22233333 8899999986 68899999999999998865421
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.+..|...|.+++|+|++++|++++. +.|++||+.. ++.+..+..|... +.+++|
T Consensus 242 --------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~ 297 (425)
T 1r5m_A 242 --------KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------IVSASW 297 (425)
T ss_dssp --------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------EEEEEE
T ss_pred --------eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------EEEEEE
Confidence 14456688999999999999999875 9999999986 7777777766544 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCC------------
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------------ 475 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~------------ 475 (515)
+|++ +|++++.|+.|++||+.++ .....+..|..++..++++|++++|++++.||.|++++-....
T Consensus 298 ~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 298 VGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp ETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 9999 9999999999999999987 4557888999999999999999999999999999992221100
Q ss_pred -----ccccCCccccccC--CeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 476 -----ALDANGNAFDFSM--KLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 476 -----~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
..........|.. .|.+++|+|++++|++++.++ +.+|+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 0001222334544 999999999999999888665 889863
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=307.22 Aligned_cols=298 Identities=16% Similarity=0.311 Sum_probs=227.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCc------ccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE------FDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~ 105 (515)
.+|.+.|.|++|+|||++||+|+ ++.++||++.+++.. ..+..|... +..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 678999999877643 111111100 000
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
.........|++++| ++++++|++++.|++|++||+.+++....
T Consensus 117 ~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~---------------------------------- 160 (393)
T 1erj_A 117 SSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMI---------------------------------- 160 (393)
T ss_dssp ----CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE----------------------------------
T ss_pred cccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------------------------
Confidence 000011145999999 55778999999999999999987653221
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
+.+|...|.+++|+|+++.|+++ .|++|++||+++
T Consensus 161 --------------------------------------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 161 --------------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp --------------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred --------------------------------------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence 35788999999999999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
++.... ..+...+.+++|+| ++ .+|++|+.|+.|++||++++..... +... .....+|..
T Consensus 197 ~~~~~~---------~~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~~~----~~~~-----~~~~~~h~~ 257 (393)
T 1erj_A 197 GQCSLT---------LSIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLVER----LDSE-----NESGTGHKD 257 (393)
T ss_dssp TEEEEE---------EECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEEEE----EC-----------CCCSS
T ss_pred CeeEEE---------EEcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEe----eccc-----ccCCCCCCC
Confidence 654322 12567799999999 66 8999999999999999988764321 1111 111356888
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCC-----------CCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.|.+++|+|++++|++|+. +.|++||++... .+...+.+|... |.+++|+|++
T Consensus 258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~ 322 (393)
T 1erj_A 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQND 322 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGG
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCC
Confidence 9999999999999999875 999999997521 122344444433 5699999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC------CCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~~d~~v~l 468 (515)
++|++|+.|+.|++||+.++ .....+.+|...|.++++++ ++.+|++|+.||+|++
T Consensus 323 ~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 323 EYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp CEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 99999999999999999987 45578999999999999876 6889999999999999
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=307.53 Aligned_cols=245 Identities=9% Similarity=0.094 Sum_probs=187.7
Q ss_pred ccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 231 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+|...|.+++|+|++.+++++.|++|++||+.+++..... .....+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 46788899999999998777668999999999876543211 11345789999999999999 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
||+++++... .+.+|...|.+++|+|++. ++++++ |+.|++||+++ +++...+..+...
T Consensus 166 wd~~~~~~~~----------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~-- 226 (357)
T 4g56_B 166 WDLSQKAVLK----------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASD-- 226 (357)
T ss_dssp EETTTTEEEE----------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCC--
T ss_pred EECCCCcEEE----------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeecccc--
Confidence 9999876532 2566778999999999875 666665 59999999986 5555544332211
Q ss_pred cccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 389 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
..+++++|+|+ +.+|++|+.|+.|++||++++ .....+.+|..+|++++|+|++ ++|++|+.|++|
T Consensus 227 -----------~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 227 -----------TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp -----------SCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred -----------ccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 11568999997 568999999999999999987 4557899999999999999987 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcC-CCCEEEEEcCC-cEEEEeC
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAASN-SLYMYYA 515 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~~~-~~~i~~~ 515 (515)
++++.... +. ...++|...|++++|+| |+++||+++.| .+++|+.
T Consensus 295 ~iwd~~~~---~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 295 AVLDADFS---EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEECTTSC---EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEECCCC---cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 99432211 11 13347899999999999 79999988755 5899973
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=302.61 Aligned_cols=306 Identities=13% Similarity=0.191 Sum_probs=228.3
Q ss_pred ccccccceEEEEE-----CC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 31 ~~~h~~~v~~v~~-----s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
..+|.+.|++++| ++ ++++||+|+.|++|+|||+.+.+..+ ........+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence 4589999999999 77 99999999999999999987654210 0112345677888
Q ss_pred ccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 105 ~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..|++++|+ +++.++++++.|++|++||+++++.......+ .+.+. +++|+|+++
T Consensus 77 --------~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLALS--QENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--------QSEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEEC--SSTTEEEEEETTSEEEEEETTSSCEEEEEECC--------CSCEE-------EEEECSSTT
T ss_pred --------CceEEEEEC--CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--------CCcEE-------EEEECCCCC
Confidence 889999995 56779999999999999999998766555433 23444 889999999
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC----------CEEEEe-C
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-D 253 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~-~ 253 (515)
.+ ++++.|+.|++|| +..... .......+|...|.+++|+|++ .+|+++ .
T Consensus 132 ~l------------~s~~~d~~i~~wd--~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~ 192 (343)
T 2xzm_R 132 QI------------LSAGAEREIKLWN--ILGECK-----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192 (343)
T ss_dssp EE------------EEEETTSCEEEEE--SSSCEE-----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET
T ss_pred EE------------EEEcCCCEEEEEe--ccCCce-----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC
Confidence 98 9999999999999 331110 0001123788999999999987 688888 8
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
|+.|++||.. .+.. ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++...... ..+
T Consensus 193 d~~i~iwd~~-~~~~--------~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~---~~~------- 252 (343)
T 2xzm_R 193 DGRLKVWNTN-FQIR--------YTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQ---REF------- 252 (343)
T ss_dssp TSEEEEEETT-TEEE--------EEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCS---EEE-------
T ss_pred CCEEEEEcCC-Ccee--------EEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccc---eee-------
Confidence 9999999953 2211 1557799999999999999 899999999999999995433211 111
Q ss_pred ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCee--eEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+...|.+++|+|++++++++.++.|++||+.+ .+... .+..+.. ...... ......+++++|+|+|
T Consensus 253 ------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~--~~~~~~--~~~~~~v~~~~~sp~g 321 (343)
T 2xzm_R 253 ------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPI--TKAEGQ--KGKNPQCTSLAWNALG 321 (343)
T ss_dssp ------ECSSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSG--GGBTTB--CCSCCCEEEEEECSSS
T ss_pred ------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcc--hhhhhh--cCCCCceEEEEECCCC
Confidence 123569999999999999988888899999986 44433 3321110 000000 0111236699999999
Q ss_pred CEEEEecCCCcEEEEecCCC
Q 010206 412 GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~ 431 (515)
++|++|+.||.|++|+++++
T Consensus 322 ~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 322 KKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCEEEEETTSEEEEEEEEEE
T ss_pred CeEEEecCCceEEEEEEEcc
Confidence 99999999999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=307.91 Aligned_cols=308 Identities=14% Similarity=0.138 Sum_probs=238.9
Q ss_pred ceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
..+...+.+|. +.|++++|+ +++.+|++|+.|++|++||+.+++.......+ ...+.
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~s--p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h--------~~~v~- 112 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDWT--PEKNWIVSASQDGRLIVWNALTSQKTHAIKLH--------CPWVM- 112 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECC--------CTTCC-
T ss_pred eEEeecccccc------------cEEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCccceEEecC--------CCCEE-
Confidence 34556788998 899999995 56779999999999999999998876665544 23344
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GET 248 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 248 (515)
.++|+|+|+.+ ++++.|+.+++|+ +...............+.+|...|.++.|.|+ +..
T Consensus 113 ------~~~~s~~g~~l------------as~~~d~~v~iw~--~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~ 172 (380)
T 3iz6_a 113 ------ECAFAPNGQSV------------ACGGLDSACSIFN--LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172 (380)
T ss_dssp ------CCEECTTSSEE------------EECCSSSCCEEEE--CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred ------EEEECCCCCEE------------EEeeCCCcEEEEE--CCCCccccCCccceeeccCCCcceEEEEEecCCCCE
Confidence 78999999999 9999999999999 44322111111112225789999999999997 456
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|++| .|++|++||+++++....+ ......+|...|.+++|+|.+.++|++|+.|+.|++||++.....
T Consensus 173 l~s~s~D~~i~~wd~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~-------- 241 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQRISIF---GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA-------- 241 (380)
T ss_dssp EEEECTTSCEEEECTTTCCEEEEE---CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC--------
T ss_pred EEEECCCCcEEEEEcCCCcEEEEe---ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc--------
Confidence 8887 8999999999977644221 111225789999999998733389999999999999999754211
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...+.+|...|.+++|+|++++|++|++ ++|++||+++ ++.+..+..+..... .....+++++
T Consensus 242 -------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~ 305 (380)
T 3iz6_a 242 -------VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVA 305 (380)
T ss_dssp -------CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEE
T ss_pred -------eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEE
Confidence 1225678899999999999999999875 9999999996 666666654432110 1112256899
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeee----ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|+|++|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++++|++|+.|++|++
T Consensus 306 ~s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 306 FSISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 9999999999999999999999877433 344 689999999999999999999999999999
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=298.01 Aligned_cols=299 Identities=15% Similarity=0.220 Sum_probs=229.6
Q ss_pred eeeeecccCCCcccccccccccc-eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~-~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (515)
..+..+.+|. . .|.+++|+ +++.+|++++.|++|++||+.+++.....
T Consensus 6 ~~~~~~~~h~------------~~~v~~l~~s--p~g~~las~~~D~~i~iw~~~~~~~~~~~----------------- 54 (345)
T 3fm0_A 6 VLLGRVPAHP------------DSRCWFLAWN--PAGTLLASCGGDRRIRIWGTEGDSWICKS----------------- 54 (345)
T ss_dssp EEEEEECCST------------TSCEEEEEEC--TTSSCEEEEETTSCEEEEEEETTEEEEEE-----------------
T ss_pred EEeeeecCCC------------CCcEEEEEEC--CCCCEEEEEcCCCeEEEEEcCCCcceeee-----------------
Confidence 4556778887 5 89999994 56789999999999999998876422110
Q ss_pred CCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE
Q 010206 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 170 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (515)
....+|...|.+++|+|++++|
T Consensus 55 ----------------------------------------------------------~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 55 ----------------------------------------------------------VLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp ----------------------------------------------------------EECSSCSSCEEEEEECTTSSEE
T ss_pred ----------------------------------------------------------eeccccCCcEEEEEECCCCCEE
Confidence 0125788999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 250 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
+++ .|++|++||+........ ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++.+.... .
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~----~--- 142 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE----C--- 142 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE----E---
T ss_pred EEEECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE----E---
Confidence 998 899999999876542211 2567899999999999998 899999999999999998753210 0
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
...+.+|...|.+++|+|++++|++++. +.|++||... .. +...+.+|... |+++
T Consensus 143 ------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l 200 (345)
T 3fm0_A 143 ------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSL 200 (345)
T ss_dssp ------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEE
T ss_pred ------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEE
Confidence 1124567789999999999999999875 9999999985 43 34566666654 5699
Q ss_pred EEcCCCCEEEEecCCCcEEEEecCCCCcc--------------eeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 406 CLSGDGGRVATGSYSNLFRVFGCSEGSAE--------------STTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 406 ~~s~~~~~l~s~s~dg~i~iw~~~~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+|+|+|++|++|+.|++|++|+....... ...+.+ |...|..++|+|++..|++++.|+.|++++
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 99999999999999999999997432211 123333 888999999999999999999999999932
Q ss_pred CCCC---Cccc--cCC-ccccccCCeeEEEEcCCCC-EEEEEcCCc-EEEEe
Q 010206 471 GADN---SALD--ANG-NAFDFSMKLLHLAWHPSEN-SIACAASNS-LYMYY 514 (515)
Q Consensus 471 ~~~~---~~~~--~~~-~~~~~~~~i~~~~~s~~~~-~la~~~~~~-~~i~~ 514 (515)
.... .... +.. ...+|...|++++|+|++. +||+++.|+ +.+|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 2111 1000 000 1235889999999999984 898887655 88986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=296.99 Aligned_cols=295 Identities=15% Similarity=0.238 Sum_probs=214.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec-cc-CCCccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 108 (515)
..+|.++|.+++|+|+ +||+|+.|+.|+||++..+.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 4579999999999988 999999999999999875431 122233 23 76
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|++++|+ +++.+|++++.|++|++||+........ .
T Consensus 59 ----~~v~~v~~s--p~~~~las~s~D~~v~iw~~~~~~~~~~---~--------------------------------- 96 (330)
T 2hes_X 59 ----KAIRSVAWR--PHTSLLAAGSFDSTVSIWAKEESADRTF---E--------------------------------- 96 (330)
T ss_dssp ----SCEEEEEEC--TTSSEEEEEETTSCEEEEEC-------C---C---------------------------------
T ss_pred ----CCEEEEEEC--CCCCEEEEEeCCCcEEEEEcccCcCccc---c---------------------------------
Confidence 889999995 5677999999999999999864320000 0
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+... +.+|...|.+++|+|++++|+++ .|++|++||++....
T Consensus 97 ----------------------------------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~ 141 (330)
T 2hes_X 97 ----------------------------------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141 (330)
T ss_dssp ----------------------------------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC
T ss_pred ----------------------------------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC
Confidence 001111 46899999999999999999998 899999999954332
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
....+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||.+++... . ...+.+|...|.+
T Consensus 142 ~~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~------------~~~~~~h~~~v~~ 202 (330)
T 2hes_X 142 EYECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--C------------VAVLNGHEGTVWS 202 (330)
T ss_dssp CCEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--E------------EEEECCCSSCEEE
T ss_pred CeEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--E------------EEEccCCCCcEEE
Confidence 21111 1567899999999999998 89999999999999998764210 0 1125678899999
Q ss_pred EEEccC--CCEEEEEcC-CeEEEEEeeCCCC-------CeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 348 IKFARN--GRHILSRDY-MTLKLWDINMDSG-------PVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 348 ~~~s~~--~~~l~s~~~-~~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
++|+|+ +.+|++|+. ++|++||+..... ....+.. |. ..|++++|++++ +|++
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---------------~~v~~v~~s~~~-~l~s 266 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---------------RQVYNVAWGFNG-LIAS 266 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---------------SCEEEEEECTTS-CEEE
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---------------cceEEEEEcCCC-EEEE
Confidence 999998 778888765 9999999975211 1111111 22 126699999665 7999
Q ss_pred ecCCCcEEEEecCCCCc--ceeeeccCCC-ceeeEEECC--CCCeeEeecCCCeEEE
Q 010206 417 GSYSNLFRVFGCSEGSA--ESTTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~--~~~~~~~~~~-~v~~~~~~~--~~~~l~s~~~d~~v~l 468 (515)
++.||.|++|+..++.. ....+.+|.. .+..++|+| ++++|++|+.||+|++
T Consensus 267 ~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 267 VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 99999999999986632 2233467876 899999999 7899999999999999
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.70 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=232.6
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+ +++.+|++++.|++|++||..+++....
T Consensus 56 ~~~~l~gH~------------~~V~~~~~s--~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 101 (354)
T 2pbi_B 56 TRRTLKGHG------------NKVLCMDWC--KDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------- 101 (354)
T ss_dssp EEEEEECCS------------SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred EEEEecCCC------------CeEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence 445678888 899999995 5678999999999999999877653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+..|...|.+++|+|++..|++
T Consensus 102 ----------------------------------------------------------~~~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 102 ----------------------------------------------------------VTMPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp ----------------------------------------------------------EECSSSCCCEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------EecCCCCEEEEEECCCCCEEEE
Confidence 1345577899999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+.+++|++......... .....+.+|...|.+++|+|++ ..|++++.|+.|++||+++++...
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~---------- 190 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQ---------- 190 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE----------
T ss_pred eeCCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEE----------
Confidence 8 8999999998754221100 0112556799999999999998 899999999999999999876432
Q ss_pred CCCccccccccccceeEEEEcc--CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 331 APGTRSFFTEIIASISDIKFAR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~--~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.+.+|...|.+++|+| ++++|++|+. +.|++||+++ ++++..+..|... |.+++|
T Consensus 191 ------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~ 248 (354)
T 2pbi_B 191 ------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRY 248 (354)
T ss_dssp ------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEE
T ss_pred ------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEE
Confidence 2566778999999987 5789999875 9999999996 7888888877755 569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcceeeec--cCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+|++++|++|+.|++|++||++++. ....+. .+...+..++|+|++++|++|+.|+.|++++.... .......+
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~ 324 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADR-EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFG 324 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999998763 333333 33457889999999999999999999999432211 12223446
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 486 FSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|...|.+++|+||+++|++++.|+ +.+|+
T Consensus 325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999998665 88884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=334.79 Aligned_cols=362 Identities=15% Similarity=0.168 Sum_probs=281.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ...+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-----------------------~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-----------------------VRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-----------------------EEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------------------EEEEecCC----------
Confidence 457999999999999999999999999999999877653 35667787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+| ++.+|++++.||.|++||+.+++.......+ .+.+. .++|+|+++.+
T Consensus 56 --~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~v~-------~~~~s~~~~~l---- 112 (814)
T 3mkq_A 56 --TPVRAGKFIA--RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV---- 112 (814)
T ss_dssp --SCEEEEEEEG--GGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CcEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEE-------EEEEeCCCCEE----
Confidence 8899999965 5679999999999999999998876655433 23344 88999999998
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.++.+++|+ +... ......+.+|...|.+++|+| ++..|+++ .|+.|++||+......
T Consensus 113 --------~~~~~dg~i~vw~--~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 113 --------LSGSDDLTVKLWN--WENN------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp --------EEEETTSEEEEEE--GGGT------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred --------EEEcCCCEEEEEE--CCCC------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence 9999999999999 3321 111222468999999999999 88899998 8999999999876554
Q ss_pred cceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
..+ ...+...+.+++|+| ++ .+|++++.||.|++||+++++... .+.+|...|.
T Consensus 177 ~~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~----------------~~~~~~~~v~ 232 (814)
T 3mkq_A 177 FTL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVA----------------TLEGHMSNVS 232 (814)
T ss_dssp EEE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEE----------------EEECCSSCEE
T ss_pred eEE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEE----------------EEcCCCCCEE
Confidence 321 123448899999999 87 899999999999999998876422 1455678899
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC--EEEEecCCCcE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLF 423 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~s~dg~i 423 (515)
+++|+|++++|++++. |.|++||+.+ ++.+..+..+... +++++|+|+++ ++++++ ++.+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~-~~~~ 295 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLER---------------SWCIATHPTGRKNYIASGF-DNGF 295 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSS---------------EEEEEECTTCGGGEEEEEE-TTEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCc---------------EEEEEEccCCCceEEEEEe-CCCE
Confidence 9999999999999875 9999999986 7777777666543 56899999987 455554 6668
Q ss_pred EEEecCCCCcce------------------------------------------eeeccCCCceeeEEECCCCCeeEeec
Q 010206 424 RVFGCSEGSAES------------------------------------------TTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 424 ~iw~~~~~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.+|++....... ..+..+...+..++++|+++++++++
T Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG 375 (814)
T ss_dssp EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE
T ss_pred EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec
Confidence 888876432110 11123455678999999999999998
Q ss_pred CCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 462 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|+.+.+++... ....+.+.+.+++|+||+++||+++.++ +.+|.
T Consensus 376 -~~~~~i~~~~~--------~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 -DGEYVIYTALA--------WRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp -TTEEEEEETTT--------TEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred -CCEEEEEECcc--------ccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 88888833111 1112356788999999999999887655 77774
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=312.48 Aligned_cols=334 Identities=12% Similarity=0.176 Sum_probs=250.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.+++++|+|+|++|++|+.||.|++||+.+.+.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44568999999999999999999999998766532 1223332 23
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
....| ++++.+|++++.|+.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 44455 45677999999999999999886643221
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 135 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----- 175 (420)
T 3vl1_A 135 ----------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR----- 175 (420)
T ss_dssp ----------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-----
T ss_pred ----------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-----
Confidence 24788999999999999999998 89999999998776543
Q ss_pred cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC------------Cccccccccc
Q 010206 275 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP------------GTRSFFTEII 342 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 342 (515)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+++++... .+..+... ........+.
T Consensus 176 ---~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 247 (420)
T 3vl1_A 176 ---TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIH----TFNRKENPHDGVNSIALFVGTDRQLHEIST 247 (420)
T ss_dssp ---EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE----EECBTTBTTCCEEEEEEEECCCSSCGGGCC
T ss_pred ---EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeE----EeecCCCCCCCccEEEEecCCcceeeeccc
Confidence 567899999999999998 899999999999999999876532 22211100 0011122345
Q ss_pred cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCC-EEEEecC
Q 010206 343 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSY 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~ 419 (515)
..+.+++|+|++++|++|+. |.|++||+++ ++.+..+.. |... +.+++|+|+++ +|++|+.
T Consensus 248 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 248 SKKNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp CCCCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEET
T ss_pred CcccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeC
Confidence 67777888999999999875 9999999986 555554432 3322 56999999999 9999999
Q ss_pred CCcEEEEecCCCCcceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcc------ccCCccccccCCeeE
Q 010206 420 SNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL------DANGNAFDFSMKLLH 492 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~------~~~~~~~~~~~~i~~ 492 (515)
||.|++||++++......+.. |..++..+.+ +++++|++++.|+.|++++-...... ........+...|.+
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 390 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQ 390 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCE
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEE
Confidence 999999999987665667776 6777877755 57889999999999999332221100 011123357789999
Q ss_pred EEEcCCCC----EEEEEcCCcEEEEeC
Q 010206 493 LAWHPSEN----SIACAASNSLYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~----~la~~~~~~~~i~~~ 515 (515)
++|+|+++ +++++..+.+.+|+.
T Consensus 391 ~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 391 FCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp EEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred EEEccCCCCcceEEEEcCCceEEEEec
Confidence 99999999 666777777888863
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=297.04 Aligned_cols=242 Identities=10% Similarity=0.097 Sum_probs=189.4
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.+...|.+++|+|++. |++| .||+|++||+++++...... ..+.+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 80 ~~~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred ccCCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 4567899999999975 5555 89999999998776543211 1346799999999999999 89999999999999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
||+++++... .+.+|...|.+++|+|++. +|++++. ++|++||+++ +++...+..+....
T Consensus 154 wd~~~~~~~~----------------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~- 215 (344)
T 4gqb_B 154 WDLAQQVVLS----------------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY- 215 (344)
T ss_dssp EETTTTEEEE----------------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC-
T ss_pred EECCCCcEEE----------------EEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec-
Confidence 9999876532 2567889999999999875 6777764 9999999986 77766664332211
Q ss_pred cccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC-CeeEeecCCCeE
Q 010206 389 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 466 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v 466 (515)
.+.+++|+|+ +++|++|+.||.|++||++++ ..+.++.+|...|++++|+|++ ++|++|+.|++|
T Consensus 216 ------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 216 ------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 1458999985 578999999999999999987 4557899999999999999998 579999999999
Q ss_pred EEecCCCCCccccCCccccccCCeeEEEEcCCCCE-EEEEc-CCcEEEEe
Q 010206 467 RRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS-IACAA-SNSLYMYY 514 (515)
Q Consensus 467 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-la~~~-~~~~~i~~ 514 (515)
++++.... ++ ....+|...|++++|+|+++. |++++ +..+++|.
T Consensus 283 ~vwd~~~~---~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 283 AVLDSSLS---EL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEECTTCC---EE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEECCCC---cE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99432211 11 234578999999999999875 56666 55688886
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=295.08 Aligned_cols=302 Identities=14% Similarity=0.185 Sum_probs=230.6
Q ss_pred ccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 4589999999999997 689999999999999999876532 122445678888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++.+|++++.|+.|++|+............... .+. ...+++++..+
T Consensus 87 ---~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~~~~l--- 143 (340)
T 4aow_A 87 ---HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK--------DVL-------SVAFSSDNRQI--- 143 (340)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS--------CEE-------EEEECTTSSCE---
T ss_pred ---CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCCC--------cee-------EEEEeecCccc---
Confidence 88999999 56788999999999999999998876655543321 111 55677888877
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++++.|+.+++|| .... ........+|...+..++|++++ .+++++ .|+.|++||+++.+
T Consensus 144 ---------~s~s~d~~~~~~d--~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~ 206 (340)
T 4aow_A 144 ---------VSGSRDKTIKLWN--TLGV------CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206 (340)
T ss_dssp ---------EEEETTSCEEEEC--TTSC------EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred ---------eeecCCCeEEEEE--eCCC------ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence 9999999999999 3321 11222246889999999998764 466777 89999999998765
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... .+.+|...|++++|+|++ ++|++|+.|+.|++||+++.+... .+. +...|.
T Consensus 207 ~~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~----~~~-------------~~~~v~ 260 (340)
T 4aow_A 207 LKT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLY----TLD-------------GGDIIN 260 (340)
T ss_dssp EEE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEE----EEE-------------CSSCEE
T ss_pred eee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceee----eec-------------CCceEE
Confidence 442 557799999999999998 899999999999999998876432 222 225799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++.|+|++.+++++.++.|++||++. ...+..+..+.... ........|++++|+|||++|++|+.||.|+||
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW 333 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVIST------SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceee------eccCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999888888889999999985 55554443321110 001112236799999999999999999999999
Q ss_pred ecCCCC
Q 010206 427 GCSEGS 432 (515)
Q Consensus 427 ~~~~~~ 432 (515)
|+++|+
T Consensus 334 ~~~tGt 339 (340)
T 4aow_A 334 QVTIGT 339 (340)
T ss_dssp EEEC--
T ss_pred eCCCcC
Confidence 999874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=288.96 Aligned_cols=294 Identities=20% Similarity=0.319 Sum_probs=235.4
Q ss_pred CCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCC
Q 010206 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (515)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 165 (515)
..|.+.....+.+|. ..|++++|+ +++++|++++.|+.|++|++.+++....
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------- 60 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKFS--PNGEWLASSSADKLIKIWGAYDGKFEKT-------------- 60 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEE--------------
T ss_pred CCCCceeEEEEcccC------------CcEEEEEEC--CCCCEEEEeeCCCeEEEEeCCCcccchh--------------
Confidence 456777788899998 889999995 5677999999999999999877653221
Q ss_pred CccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC
Q 010206 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD 245 (515)
Q Consensus 166 ~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (515)
+.+|...|.+++|+|+
T Consensus 61 ----------------------------------------------------------------~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 61 ----------------------------------------------------------------ISGHKLGISDVAWSSD 76 (312)
T ss_dssp ----------------------------------------------------------------ECCCSSCEEEEEECTT
T ss_pred ----------------------------------------------------------------hccCCCceEEEEEcCC
Confidence 3467789999999999
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+++|+++ .|+.|++||+++.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++...
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~---- 143 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLK---- 143 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEE----
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEE----
Confidence 9999998 89999999998766442 557799999999999998 899999999999999998875421
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcccee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
.+..|..+|.+++|+|++++|++++. +.|++||+++ ++.+..+..+... .+.
T Consensus 144 ------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~ 196 (312)
T 4ery_A 144 ------------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVS 196 (312)
T ss_dssp ------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEE
T ss_pred ------------EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceE
Confidence 14556688999999999999999875 9999999986 6665555332211 145
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceee---EEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRR---QVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
.++|+|++++|++++.||.|++||+.++ .....+.+|...... ....+++.+|++|+.||.|++++- ...+..
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~---~~~~~~ 272 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIV 272 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET---TTCCEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC---CCchhh
Confidence 8999999999999999999999999987 445677777665433 234578899999999999999332 222233
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEc---CCcEEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~---~~~~~i~~~ 515 (515)
....+|...|.+++|+|++++|++++ +..+.+|..
T Consensus 273 ~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 34456889999999999999999885 556999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=331.16 Aligned_cols=424 Identities=12% Similarity=0.043 Sum_probs=263.4
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee-
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK- 93 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 93 (515)
..|++... .......|.+.|++++|+|++++|++|+.||.|++||+.+++.. .+. . +.....
T Consensus 82 ~lWd~~~~----~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-----~~~--i------~~~~~~~ 144 (902)
T 2oaj_A 82 YVLSLYSQ----KVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-----SFK--L------DNLQKSS 144 (902)
T ss_dssp EEEETTTC----SEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-----EEE--E------CCHHHHH
T ss_pred EEEECCCC----cEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-----cce--e------ccccccc
Confidence 45776531 11223357789999999999999999999999999999876531 000 0 000000
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC----------CC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA----------AG 163 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----------~~ 163 (515)
..+.+|. ..|++++|+|. ++..+++++.|+.| +||+++++.......+..+... ..
T Consensus 145 ~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 145 FFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp TCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 2245666 88999999763 23589999999999 9999998876655443111000 00
Q ss_pred CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeec-----------c
Q 010206 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAH-----------A 232 (515)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~-----------~ 232 (515)
.+.+. +++|+|+|+.+ ++++.|+.|++|| +...+............. .
T Consensus 211 ~~~V~-------~v~fspdg~~l------------asgs~Dg~i~lWd--~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 211 TPKVI-------QSLYHPNSLHI------------ITIHEDNSLVFWD--ANSGHMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp CCCEE-------EEEECTTSSEE------------EEEETTCCEEEEE--TTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred CCCeE-------EEEEcCCCCEE------------EEEECCCeEEEEE--CCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence 12343 89999999998 9999999999999 433221100000000000 1
Q ss_pred CcCCeEEEEec----CCC-CEEEEe-------------------------------------------------------
Q 010206 233 HDYHINSISNN----SDG-ETFISA------------------------------------------------------- 252 (515)
Q Consensus 233 ~~~~v~~~~~~----~~~-~~l~s~------------------------------------------------------- 252 (515)
|...|.+++|+ |++ .+|++|
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL 349 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence 23346666663 222 233333
Q ss_pred ----------------------CCCcEEEEeCCCCCccccee---------------------------------cccCc
Q 010206 253 ----------------------DDLRINLWNLEISNQSFNIV---------------------------------DVKPA 277 (515)
Q Consensus 253 ----------------------~d~~i~iwd~~~~~~~~~~~---------------------------------~~~~~ 277 (515)
.|+.|++||+.++....... .....
T Consensus 350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~ 429 (902)
T 2oaj_A 350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY 429 (902)
T ss_dssp ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence 33444444443221110000 00001
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 357 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 357 (515)
.+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+...- .+....+|...|.+++|+|++++|
T Consensus 430 ~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp SCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeE
Confidence 123344444555667888 899999999999999998874311 11111100 000012677899999999999999
Q ss_pred EEEcC-CeEEEEEeeCCCCC---------------------------------------------eeeEeeecccccccc
Q 010206 358 LSRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLC 391 (515)
Q Consensus 358 ~s~~~-~~i~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~ 391 (515)
|+|+. ++|+|||+.. ++. +..+.+|..
T Consensus 504 Asgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------ 576 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------ 576 (902)
T ss_dssp EEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC------
T ss_pred EEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC------
Confidence 99875 9999999985 321 222333332
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce----eeec-cCCCceeeEEEC-----CCC---CeeE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRP 458 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~ 458 (515)
.|++++||||| +||+|+.|++|++||+++...+. ..+. +|...|++++|+ ||| ++|+
T Consensus 577 ---------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 577 ---------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp ---------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred ---------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 36799999999 99999999999999998653221 2343 899999999999 885 8999
Q ss_pred eecCCCeEEEecC-----CCCCccccCCc-cccccCCeeEEE-Ec----------------------CCCCEEEEEcCCc
Q 010206 459 LGSLSGVVRRVKG-----ADNSALDANGN-AFDFSMKLLHLA-WH----------------------PSENSIACAASNS 509 (515)
Q Consensus 459 s~~~d~~v~l~~~-----~~~~~~~~~~~-~~~~~~~i~~~~-~s----------------------~~~~~la~~~~~~ 509 (515)
+|+.|++|++++- ++.. ..+... ...+.+.|.+++ |+ +++..|+++ ++.
T Consensus 647 sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ 724 (902)
T 2oaj_A 647 CGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDD 724 (902)
T ss_dssp EEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSE
T ss_pred EEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccc
Confidence 9999999999321 1110 011110 112346777777 76 455555554 788
Q ss_pred EEEEeC
Q 010206 510 LYMYYA 515 (515)
Q Consensus 510 ~~i~~~ 515 (515)
+.||+.
T Consensus 725 ir~~~~ 730 (902)
T 2oaj_A 725 IRLITL 730 (902)
T ss_dssp EEEECT
T ss_pred eEEEeC
Confidence 999963
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=289.35 Aligned_cols=295 Identities=16% Similarity=0.216 Sum_probs=228.1
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.+.+..++.+|. +.|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 6 ~~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~------------------ 54 (319)
T 3frx_A 6 VLVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKF------------------ 54 (319)
T ss_dssp EEEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEE------------------
T ss_pred EEEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccc------------------
Confidence 344667789998 89999999653 23699999999999999986432110
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
..+... +.+|...|.+++|+|++++
T Consensus 55 ------------------------------------------------------~~~~~~-~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 55 ------------------------------------------------------GVPVRS-FKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp ------------------------------------------------------EEEEEE-EECCSSCEEEEEECTTSSE
T ss_pred ------------------------------------------------------cccceE-EeCCcccEEEEEECCCCCE
Confidence 001111 4689999999999999999
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+++ .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++....
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~--------- 141 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL--------- 141 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE---------
T ss_pred EEEEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE---------
Confidence 9998 89999999998776442 567899999999999998 8999999999999999965321
Q ss_pred eccCCCccccccccccceeEEEEccC------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARN------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
..+.+|...|.++.|+|. +..+++++. +.|++||+.. .+....+.+|...
T Consensus 142 --------~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~-------------- 198 (319)
T 3frx_A 142 --------ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN-------------- 198 (319)
T ss_dssp --------EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC--------------
T ss_pred --------EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc--------------
Confidence 124567789999999985 447888765 9999999986 6677777777655
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCCCCc--
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSA-- 476 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~~~~-- 476 (515)
|.+++|+|++++|++|+.||.|++||+.++ .....+.. ..++.+++|+|++.++++++.++ +++ ++......
T Consensus 199 -v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~ 274 (319)
T 3frx_A 199 -INTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDL 274 (319)
T ss_dssp -EEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEE
T ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeecc
Confidence 569999999999999999999999999987 44456654 46899999999999999988665 565 22111110
Q ss_pred -cccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 477 -LDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 477 -~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.........+...+.+++|+|||++|++++.|+ +.+|+
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 011111223567899999999999999888665 88996
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=294.50 Aligned_cols=325 Identities=12% Similarity=0.131 Sum_probs=252.4
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 466789999999999999998877766555433221 112233566
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ ++++++++++ |+.|++||+.+++.....
T Consensus 52 ~~v~~~~~~--~~~~~l~~~~-dg~i~iw~~~~~~~~~~~---------------------------------------- 88 (337)
T 1gxr_A 52 EVVCAVTIS--NPTRHVYTGG-KGCVKVWDISHPGNKSPV---------------------------------------- 88 (337)
T ss_dssp SCCCEEEEC--SSSSEEEEEC-BSEEEEEETTSTTCCSCS----------------------------------------
T ss_pred CceEEEEEe--cCCcEEEEcC-CCeEEEEECCCCCceeee----------------------------------------
Confidence 889999995 5677898888 999999999875411100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. .....+|...|.+++|+|++++|+++ .|+.|++||+++.+....
T Consensus 89 ---------------~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~- 134 (337)
T 1gxr_A 89 ---------------S------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK- 134 (337)
T ss_dssp ---------------E------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-
T ss_pred ---------------e------------------cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee-
Confidence 0 00013677899999999999999998 899999999987653221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++... .+..|...|.+++|+
T Consensus 135 -----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~----------------~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 135 -----AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVR----------------QFQGHTDGASCIDIS 192 (337)
T ss_dssp -----EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEEC
T ss_pred -----eecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceee----------------eeecccCceEEEEEC
Confidence 1456788999999999998 899999999999999998875422 144566889999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|++++|++++. +.|++||+++ ++.+..+. +... +.+++|+|++++|++++.|+.|++||+.+
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CCCCEEEEEecCCcEEEEECCC-CceEeeec-CCCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 99999999875 9999999986 55555543 2221 45899999999999999999999999997
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS- 509 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~- 509 (515)
+. ...+..|..++..++++|++++|++++.||.+++++-.... .. ....+...|.+++|+|++++|++++.++
T Consensus 256 ~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 256 PD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SI-FQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EE-EEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred CC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---EE-EEecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 63 35778999999999999999999999999999994322211 11 2234678999999999999999888665
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|+
T Consensus 330 i~iw~ 334 (337)
T 1gxr_A 330 ATVYE 334 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=304.20 Aligned_cols=294 Identities=11% Similarity=0.118 Sum_probs=224.0
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+.|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 46888999999999 5679999999999999999766532 334566787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|++|+|+|. ++.+|++++.|++|++||++++........
T Consensus 165 --~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------ 205 (435)
T 4e54_B 165 --GSITGLKFNPL-NTNQFYASSMEGTTRLQDFKGNILRVFASS------------------------------------ 205 (435)
T ss_dssp --CCCCEEEECSS-CTTEEEEECSSSCEEEEETTSCEEEEEECC------------------------------------
T ss_pred --CCEEEEEEeCC-CCCEEEEEeCCCEEEEeeccCCceeEEecc------------------------------------
Confidence 88999999653 457999999999999999986543222110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
..+...+.+++|+|++++|++| .|+.|++||++.. ..
T Consensus 206 ----------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~- 243 (435)
T 4e54_B 206 ----------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-EL- 243 (435)
T ss_dssp ----------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BC-
T ss_pred ----------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-ee-
Confidence 1233457789999999999999 8999999998743 22
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+.... .....+|..+|++++
T Consensus 244 -------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-------------~~~~~~h~~~v~~~~ 303 (435)
T 4e54_B 244 -------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-------------FLYSLPHRHPVNAAC 303 (435)
T ss_dssp -------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-------------CSBCCBCSSCEEECC
T ss_pred -------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-------------EEEeeecccccccee
Confidence 256789999999999999867899999999999999988653221 111356788999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec----------
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---------- 418 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s---------- 418 (515)
|+|+|++|++++. +.|+|||+.. +.....+..|........ .+..+.|+|++.++++++
T Consensus 304 ~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 373 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCT 373 (435)
T ss_dssp BCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred ECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 9999999999875 9999999986 666666665543211100 012445666655555443
Q ss_pred --CCCcEEEEecCCCCcceeeeccCCCceeeE-EECCCCCeeEeecCCCeEEE
Q 010206 419 --YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 419 --~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~d~~v~l 468 (515)
.++.|++||..++..+.....+|...|.++ +|+|++++|++|+ |+.|++
T Consensus 374 ~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 374 PYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp TTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred ecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 346799999998855444456788889887 6999999999987 788999
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=311.54 Aligned_cols=338 Identities=9% Similarity=0.033 Sum_probs=231.5
Q ss_pred cccccceEEEEECCCC---------CeEEe-------------------ecCCCeEEEEEcccCcccCccccCccccccc
Q 010206 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g---------~~las-------------------g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 83 (515)
..+.+.|.+++|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3456778888888876 56665 557889999998765521
Q ss_pred ccCCccceeeeecccCCCcccccccccccceeEEEEEeec----CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcc
Q 010206 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (515)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 159 (515)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+..++........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---- 254 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---- 254 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC----
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee----
Confidence 01112345555 77999999875 34579999999999999999765311000000
Q ss_pred cCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEE
Q 010206 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS 239 (515)
Q Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (515)
+ ..+... +.+|...|.+
T Consensus 255 ------------------------------------------------------~--------~~p~~~-l~~h~~~v~s 271 (524)
T 2j04_B 255 ------------------------------------------------------C--------EKPSLT-LSLADSLITT 271 (524)
T ss_dssp ------------------------------------------------------C--------CSCSEE-ECCTTTCEEE
T ss_pred ------------------------------------------------------e--------cCceEE-EEcCCCCEEE
Confidence 0 000011 3678899999
Q ss_pred EEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEE--EEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 240 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
++|++++ .|++| .||+|++||++++..... .+.+|...|.++ +|+|++.++|++|+.|++|+|||++++
T Consensus 272 v~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 272 FDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp EEESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred EEecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 9999865 78888 899999999986643321 457899999999 567764368999999999999999987
Q ss_pred cccccccceeeeccCCCccccccccc--cceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+... . +.+|. ..|.+++|+|+++.++++++ ++|++||++. +.++.++.+|...
T Consensus 344 ~~~~----~------------~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~------- 399 (524)
T 2j04_B 344 ATTK----T------------TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT------- 399 (524)
T ss_dssp HHHC----E------------EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC-------
T ss_pred Cccc----c------------cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc-------
Confidence 6432 1 22232 24789999999999998765 9999999986 7777888888765
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-----CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|+|+|++|++|+.||+|++||+..+ ....++. +...+..++++|++..+.. ..+..+..
T Consensus 400 --------V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~ 468 (524)
T 2j04_B 400 --------ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYP 468 (524)
T ss_dssp --------EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CCCCCCCC
T ss_pred --------eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cCCceecc
Confidence 669999999999999999999999998743 2222221 1225678999999885532 11111111
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCC---EEEEEcCCc-EEEEe
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAASNS-LYMYY 514 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~la~~~~~~-~~i~~ 514 (515)
.+ . .........+|...|.+++|+|+++ .||+|+.+| +.||.
T Consensus 469 ~~---~-~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 469 LT---V-NDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -----------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cc---c-CCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 00 0 0112223456889999999999965 999999865 88886
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=286.67 Aligned_cols=301 Identities=16% Similarity=0.180 Sum_probs=216.9
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
+....+.+|. +.|.+++|+| + +|++++.|++|++||+..+......
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~~~~~~------------------ 50 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDDFTLID------------------ 50 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEEET--T--EEEEEESSSCEEEEECSSSCCEEEE------------------
T ss_pred ccceeeccCC------------CceeeeccCC--C--EEEEEcCCCEEEEEEecCCCeEEEE------------------
Confidence 3556788888 8899999953 3 8999999999999998764311110
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee-eccCcCCeEEEEecCCCCEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETF 249 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 249 (515)
.+ ..+|...|.+++|+|++++|
T Consensus 51 ---------------------------------------------------------~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 51 ---------------------------------------------------------VLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp ---------------------------------------------------------EECTTCCCSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------------------EEecCCccCCEEEEEECCCCCEE
Confidence 00 12488999999999999999
Q ss_pred EEe-CCCcEEEEeCCCCCcc---cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 250 ISA-DDLRINLWNLEISNQS---FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 250 ~s~-~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
+++ .|++|++||++..... .... ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++......+.
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~----~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~--- 145 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLL----AIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYEC--- 145 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEE----EEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEE---
T ss_pred EEEeCCCcEEEEEcccCcCccccceeE----EEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEE---
Confidence 998 8999999998643210 0100 2567899999999999998 89999999999999999543211010
Q ss_pred eeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCC-CCCeeeEeeeccccccccccccCCCcccee
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
...+.+|...|.+++|+|++++|++++. ++|++||.... .+++..+.+|... |+
T Consensus 146 ---------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~---------------v~ 201 (330)
T 2hes_X 146 ---------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT---------------VW 201 (330)
T ss_dssp ---------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC---------------EE
T ss_pred ---------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc---------------EE
Confidence 1125667889999999999999999875 99999999852 1466777777655 56
Q ss_pred eEEEcCC--CCEEEEecCCCcEEEEecCCCC-------cceeeecc-CCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 404 ECCLSGD--GGRVATGSYSNLFRVFGCSEGS-------AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 404 ~~~~s~~--~~~l~s~s~dg~i~iw~~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
+++|+|+ +.+|++|+.|++|++||+..+. .....+.. |..+|.+++|++++ +|++++.||.|++++...
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 9999998 7799999999999999997542 11234444 89999999999665 899999999999933211
Q ss_pred CCccccCCccccccC-CeeEEEEcC--CCCEEEEEcCCc-EEEEeC
Q 010206 474 NSALDANGNAFDFSM-KLLHLAWHP--SENSIACAASNS-LYMYYA 515 (515)
Q Consensus 474 ~~~~~~~~~~~~~~~-~i~~~~~s~--~~~~la~~~~~~-~~i~~~ 515 (515)
............|.. .|.+++|+| ++++||+++.|+ +.+|+.
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 000001111234665 899999999 789999888665 888863
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=286.29 Aligned_cols=301 Identities=14% Similarity=0.195 Sum_probs=226.0
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEee----cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCC
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (515)
.+.....+.+|. ..|++++|.+ .+++.+|++|+.|++|++||+.+.+.....
T Consensus 10 ~~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~------------ 65 (343)
T 2xzm_R 10 QVVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF------------ 65 (343)
T ss_dssp EEEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBS------------
T ss_pred Eeeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccccc------------
Confidence 344566788998 8899999932 136779999999999999998764310000
Q ss_pred CCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC
Q 010206 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 244 (515)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (515)
..+... +.+|...|.+++|+|
T Consensus 66 ----------------------------------------------------------~~~~~~-l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 66 ----------------------------------------------------------GIPHKA-LTGHNHFVSDLALSQ 86 (343)
T ss_dssp ----------------------------------------------------------EEEEEE-ECCCSSCEEEEEECS
T ss_pred ----------------------------------------------------------ccccch-hccCCCceEEEEECC
Confidence 001111 468999999999999
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
++.+|+++ .|++|++||+++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||+......
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~--------~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~---- 153 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYK--------RFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF---- 153 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEE--------EEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEE--------EEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----
Confidence 99999998 89999999998776442 567899999999999998 89999999999999999743211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCC----------CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNG----------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~----------~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.. ....+|...|.+++|+|++ .+|++++. +.|++||.. .+....+.+|...
T Consensus 154 -~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~------ 215 (343)
T 2xzm_R 154 -SS---------AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESN------ 215 (343)
T ss_dssp -EC---------CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSC------
T ss_pred -ee---------ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCcccc------
Confidence 00 0123577889999999987 68888765 999999943 5666677777654
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
|.+++|+|+|++|++|+.||.|++||+.........+ .+...+.+++|+|++++++++ .|+.+++++..
T Consensus 216 ---------v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~ 284 (343)
T 2xzm_R 216 ---------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM 284 (343)
T ss_dssp ---------EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred ---------ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence 5699999999999999999999999996543443333 345679999999999888755 57788983321
Q ss_pred --CCCc-cccCC-------ccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 473 --DNSA-LDANG-------NAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 473 --~~~~-~~~~~-------~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
+... ..+.. ...+|...|.+++|+|++++|++|+.|+ +.+|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 1110 00110 0125678899999999999999988666 77886
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=314.19 Aligned_cols=307 Identities=15% Similarity=0.227 Sum_probs=233.2
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++++|+|++ ++|++|+.||.|+||++.+.... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 45899999999999864 79999999999999998765421 112335577888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++++|++++.|++|++||+.+++.......+ .+.|. +++|+|+++.+
T Consensus 431 ---~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l--- 487 (694)
T 3dm0_A 431 ---HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--------TKDVL-------SVAFSLDNRQI--- 487 (694)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--------CCCEE-------EEEEeCCCCEE---
Confidence 88999999 456789999999999999999998766655433 23444 88999999998
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC--CEEEEe-CCCcEEEEeCCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~ 266 (515)
++++.|+.|++|| ...... . .......+|...|.+++|+|++ ..|+++ .|++|++||+++.+
T Consensus 488 ---------~s~s~D~~i~iwd--~~~~~~---~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 488 ---------VSASRDRTIKLWN--TLGECK---Y-TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp ---------EEEETTSCEEEEC--TTSCEE---E-EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred ---------EEEeCCCEEEEEE--CCCCcc---e-eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 9999999999999 322111 0 0011125788999999999986 578887 89999999998665
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... .+.+|...|++++|+|++ ++|++|+.||.|++||+++++.... +. +...|.
T Consensus 553 ~~~--------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~----~~-------------~~~~v~ 606 (694)
T 3dm0_A 553 LRS--------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYS----LE-------------ANSVIH 606 (694)
T ss_dssp EEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEEC----CB-------------CSSCEE
T ss_pred EEE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEE----ec-------------CCCcEE
Confidence 432 567899999999999998 8999999999999999998865321 11 225799
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccc----cccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD----LYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+++|+|++.+|++++++.|++||+.+ +..+..+..+......... .........+++++|+|+|++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999999999888899999986 6666665543221100000 000111223568999999999999999999
Q ss_pred EEEEecC
Q 010206 423 FRVFGCS 429 (515)
Q Consensus 423 i~iw~~~ 429 (515)
|++|++.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=283.18 Aligned_cols=288 Identities=14% Similarity=0.198 Sum_probs=236.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|.
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 74 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT--------- 74 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS---------
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC---------
Confidence 356899999999999999999999999999999988765 335677787
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++.....
T Consensus 75 ---~~v~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------- 112 (369)
T 3zwl_B 75 ---GTIWSIDVD--CFTKYCVTGSADYSIKLWDVSNGQCVATW------------------------------------- 112 (369)
T ss_dssp ---SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred ---CcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-------------------------------------
Confidence 889999995 56779999999999999999876533321
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-----CcEEEEeCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLE 263 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~ 263 (515)
.+...|.+++|+|++++|+++ .+ +.|++||+.
T Consensus 113 ------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~ 150 (369)
T 3zwl_B 113 ------------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE 150 (369)
T ss_dssp ------------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred ------------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence 144678999999999999998 77 999999998
Q ss_pred CCCcccceeccc---CccccccCC--ceEEEEEecCCCcEEEEEecCCeEEEEecCcc-cccccccceeeeccCCCcccc
Q 010206 264 ISNQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 264 ~~~~~~~~~~~~---~~~~~~~~~--~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.......+.... ...+..|.. .+.+++|+|++ ++|++++.||.|++||+++. ... . .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~------------~ 213 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----D------------S 213 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----E------------E
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----E------------E
Confidence 765433222111 123344555 89999999998 89999999999999999873 321 1 1
Q ss_pred ccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 338 FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 338 ~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
+..|...|.+++|+|++++|++++. +.|++||+.+ .+.+..+. +... +..++|+|+++++++
T Consensus 214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 214 IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYE-TDCP---------------LNTAVITPLKEFIIL 276 (369)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEE-CSSC---------------EEEEEECSSSSEEEE
T ss_pred EecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-Cceeeeec-CCCC---------------ceeEEecCCCceEEE
Confidence 4456688999999999999999875 9999999986 77776665 2222 458999999999999
Q ss_pred ecCCC--------------cEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 417 GSYSN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 417 ~s~dg--------------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.++ .+++||+.++ .....+.+|...+..++|+|++++|++++.||.|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp EECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 99888 8999999987 455788999999999999999999999999999999
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=308.38 Aligned_cols=385 Identities=13% Similarity=0.106 Sum_probs=262.9
Q ss_pred cccccccc-eEEEEECC--CCCeEEeecCCCeEEEEEcccCccc----CccccCc---ccccccccCCccceeeeecccC
Q 010206 30 EEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDN----GGQRRDL---EMMDYSMSRHPEFRYKTEFQSH 99 (515)
Q Consensus 30 ~~~~h~~~-v~~v~~s~--~g~~lasg~~dg~v~vw~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h 99 (515)
...+|.+. |++++|+| ++++||+|+.||.|+|||+.+++.. ......+ ......+.|+|+.+++......
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 34579999 99999999 9999999999999999999755110 0111111 2223456777776554432211
Q ss_pred CC------ccc---cccc-ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 100 EP------EFD---YLKS-LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 100 ~~------~~~---~~~~-~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.. .++ .+.. ..+...|.+++|+| ++. .+++++.|+.|++||+.+++.......+... ...+.
T Consensus 138 ~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~~~v~ 210 (615)
T 1pgu_A 138 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-----GSFVR 210 (615)
T ss_dssp SSCSEEEEETTTCCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-----TCCEE
T ss_pred CCCccEEEEEECCCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC-----CceEE
Confidence 00 000 0001 13458899999954 455 7999999999999999988776655433110 00344
Q ss_pred CCCCcCCCceeecC-CCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeec---cCcCCeEEEEecC
Q 010206 169 GSHVSAIPKSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAH---AHDYHINSISNNS 244 (515)
Q Consensus 169 ~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 244 (515)
.++|+|+ ++.+ ++++.++.|++|| +... +....+.. .|...|.+++|+
T Consensus 211 -------~~~~~~~~~~~l------------~~~~~dg~i~vwd--~~~~------~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 211 -------DVEFSPDSGEFV------------ITVGSDRKISCFD--GKSG------EFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp -------EEEECSTTCCEE------------EEEETTCCEEEEE--TTTC------CEEEECCBTTBCCCSCEEEEEES-
T ss_pred -------EEEECCCCCCEE------------EEEeCCCeEEEEE--CCCC------CEeEEecccccccCCceEEEEEc-
Confidence 7899999 9988 9999999999999 4332 23333224 899999999999
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecc---------------------------------cCccc----cccC---
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDV---------------------------------KPANM----EDLT--- 283 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~---------------------------------~~~~~----~~~~--- 283 (515)
++++|+++ .|+.|++||+++.+....+... ..... .+|.
T Consensus 263 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 99999998 8999999999876543221100 00000 0122
Q ss_pred ------------------------------CceEEEEEecCCCcEEEEEecCCeEEEEecCccccc--------------
Q 010206 284 ------------------------------EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-------------- 319 (515)
Q Consensus 284 ------------------------------~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-------------- 319 (515)
..|.+++| +++ ..|++++.|+.|++||+++++..
T Consensus 343 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~ 420 (615)
T 1pgu_A 343 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 420 (615)
T ss_dssp EEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEE
T ss_pred EEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCE
Confidence 23333333 223 45555666666666655432210
Q ss_pred ---------------------------------------------ccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 320 ---------------------------------------------DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 320 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
...++.++..........+.+|...|.+++|+|++
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 421 AVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS
T ss_pred EEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCC
Confidence 00001111000000003456788999999999999
Q ss_pred CEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcC----------CCCEEEEecCCCc
Q 010206 355 RHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSG----------DGGRVATGSYSNL 422 (515)
Q Consensus 355 ~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~s~dg~ 422 (515)
++|++++. +.|++||+.+ ++.+..+.+ |... |++++|+| ++++|++++.||.
T Consensus 501 ~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~---------------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~ 564 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATGSLDTN 564 (615)
T ss_dssp SEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred CEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc---------------eeEEEEcCccccccccccCCCEEEEEcCCCc
Confidence 99999875 9999999986 777666665 5543 56999999 9999999999999
Q ss_pred EEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++||+.++......+.+|..+|.+++|+|+++ |++++.|+.|++
T Consensus 565 i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i 609 (615)
T 1pgu_A 565 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR 609 (615)
T ss_dssp EEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred EEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence 999999987566688999999999999999999 999999999998
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=278.00 Aligned_cols=258 Identities=13% Similarity=0.226 Sum_probs=199.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.|+.|+||++.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 457999999999999999999999999999999865321 1345678898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.|++++|++..++.+|++++.|++|++||+.+++....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--------------------------------------- 92 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--------------------------------------- 92 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---------------------------------------
Confidence 889999997644567999999999999999876531110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
.. +.+|...|.+++|+|+ +.+|+++ .|++|++||++....
T Consensus 93 ------------------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~ 135 (297)
T 2pm7_B 93 ------------------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT 135 (297)
T ss_dssp ------------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC
T ss_pred ------------------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc
Confidence 00 2468889999999997 8899998 899999999986542
Q ss_pred ccceecccCccccccCCceEEEEEecCC------------CcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
... ..+.+|...|.+++|+|++ .++|++|+.|+.|++||++++...... .
T Consensus 136 ~~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------~ 197 (297)
T 2pm7_B 136 TSP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------E 197 (297)
T ss_dssp BCC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------E
T ss_pred eee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------E
Confidence 211 1457799999999999972 268999999999999999875421100 1
Q ss_pred ccccccccceeEEEEccCC---CEEEEEcC-CeEEEEEeeCCCCCe--eeE--eeeccccccccccccCCCccceeeEEE
Q 010206 336 SFFTEIIASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 336 ~~~~~~~~~i~~~~~s~~~---~~l~s~~~-~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
..+.+|...|.+++|+|++ ++|++++. ++|++||+....... ..+ ..|.. .|++++|
T Consensus 198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~ 262 (297)
T 2pm7_B 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASW 262 (297)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEE
T ss_pred EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEE
Confidence 1256788999999999984 78999875 999999998522211 111 11211 2569999
Q ss_pred cCCCCEEEEecCCCcEEEEecCC
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+|+|++|++++.||.|++|+...
T Consensus 263 s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCEEEEEcCCCcEEEEEECC
Confidence 99999999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=278.42 Aligned_cols=285 Identities=11% Similarity=0.172 Sum_probs=229.4
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|++++|+|++++|++++ ||.|++|++.+++..... ......+|.
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~------------------~~~~~~~~~--------- 97 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------------SQLDCLNRD--------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------------EEEECSCTT---------
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee------------------ecccccCCC---------
Confidence 3458999999999999999999999 999999999876532000 111122555
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++++|++++.|+.|++||+.+++......
T Consensus 98 ---~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------------------ 136 (337)
T 1gxr_A 98 ---NYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------ 136 (337)
T ss_dssp ---SBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEE------------------------------------
T ss_pred ---CcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeee------------------------------------
Confidence 789999995 567799999999999999998764211110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+..|...|.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 137 ----------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 137 ----------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp ----------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ----------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence 24677889999999999999998 8999999999876543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+..|...|.+++|+|++ ..|++++.|+.|++||+++++.... ..+...+.++
T Consensus 177 ~--------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~-----------------~~~~~~v~~~ 230 (337)
T 1gxr_A 177 R--------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQQ-----------------HDFTSQIFSL 230 (337)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----------------EECSSCEEEE
T ss_pred e--------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceEee-----------------ecCCCceEEE
Confidence 2 456789999999999998 8999999999999999998764321 1234679999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|+++++++++. +.|++||+.. .+ ...+..|... +.+++|+|++++|++++.||.|++||
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEE
Confidence 99999999999875 9999999985 33 3344444433 56999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+++.. ....|..++.+++++|++++|++++.||.+++
T Consensus 294 ~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 294 TPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TTTCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 9987433 34568889999999999999999999999998
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=284.88 Aligned_cols=303 Identities=14% Similarity=0.165 Sum_probs=234.3
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|++++|+|+|++||+|+.||.|++|++.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999876641 1345677787
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+| ++.+|++++.|+.|++||+.+++......
T Consensus 53 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------- 91 (372)
T 1k8k_C 53 GQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------------------------- 91 (372)
T ss_dssp SCEEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CcccEEEEeC--CCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence 8899999965 67799999999999999998775332211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...|...|.+++|+|++++|+++ .|+.|++||++........
T Consensus 92 -------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~ 134 (372)
T 1k8k_C 92 -------------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC 134 (372)
T ss_dssp -------------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE
T ss_pred -------------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee
Confidence 23567889999999999999998 8999999999876532111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc-eeee-ccCCCccccccccccceeEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFEE-QEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. .....|...|.+++|+|++ .+|++++.|+.|++||++.......... .+.. .........+.+|...|.+++
T Consensus 135 ~----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 209 (372)
T 1k8k_C 135 K----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209 (372)
T ss_dssp E----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred e----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence 1 1235688999999999998 8999999999999999864322110000 0000 000111223456788999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||+++ ++++..+..|... +.+++|+|++++|++| .|+.|++|++
T Consensus 210 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~ 272 (372)
T 1k8k_C 210 FSANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTY 272 (372)
T ss_dssp ECSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence 9999999999875 9999999996 7888888777544 5599999999999888 8999999999
Q ss_pred CC--CCc-------------------------------ce------eee-ccCCCceeeEEEC-CCC---CeeEeecCCC
Q 010206 429 SE--GSA-------------------------------ES------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSG 464 (515)
Q Consensus 429 ~~--~~~-------------------------------~~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~d~ 464 (515)
.+ +.. .. ..+ .+|..+|+++++. +++ .+|++|+.||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg 352 (372)
T 1k8k_C 273 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 352 (372)
T ss_dssp ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred cCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence 87 310 00 223 4899999999865 676 9999999999
Q ss_pred eEEE
Q 010206 465 VVRR 468 (515)
Q Consensus 465 ~v~l 468 (515)
.|++
T Consensus 353 ~i~~ 356 (372)
T 1k8k_C 353 GMSI 356 (372)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 9999
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=317.05 Aligned_cols=381 Identities=14% Similarity=0.157 Sum_probs=281.3
Q ss_pred cccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeee
Q 010206 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKT 94 (515)
Q Consensus 15 ~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (515)
..|++... .......+|..+|++++|+|+|++||+|+.||.|+||++.+++. ..
T Consensus 38 ~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------------------~~ 91 (814)
T 3mkq_A 38 EIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------------------VV 91 (814)
T ss_dssp EEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------------------EE
T ss_pred EEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------------EE
Confidence 45776541 11223347999999999999999999999999999999987763 35
Q ss_pred ecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC-eeEEEeeccCCcccCCCCCCccCCCCc
Q 010206 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (515)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (515)
.+.+|. ..|++++|+ +++.+|++++.|++|++||+.++ ........+ .+.+.
T Consensus 92 ~~~~~~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~v~----- 144 (814)
T 3mkq_A 92 DFEAHP------------DYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------EHFVM----- 144 (814)
T ss_dssp EEECCS------------SCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------SSCEE-----
T ss_pred EEecCC------------CCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------CCcEE-----
Confidence 567787 889999995 56779999999999999999987 444443322 23333
Q ss_pred CCCceeec-CCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEE
Q 010206 174 AIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI 250 (515)
Q Consensus 174 ~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 250 (515)
.++|+| ++..+ ++++.++.|++|| +.... ........+...+.+++|+| ++.+|+
T Consensus 145 --~~~~~p~~~~~l------------~~~~~dg~v~vwd--~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 145 --CVAFNPKDPSTF------------ASGCLDRTVKVWS--LGQST------PNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp --EEEEETTEEEEE------------EEEETTSEEEEEE--TTCSS------CSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred --EEEEEcCCCCEE------------EEEeCCCeEEEEE--CCCCc------ceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 789999 88888 9999999999999 43322 22232345558899999999 999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++||+.+++... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++... .
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~----~---- 265 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEK----T---- 265 (814)
T ss_dssp EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEEE----E----
T ss_pred EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEE----E----
Confidence 98 89999999998765432 556789999999999999 899999999999999998875432 1
Q ss_pred cCCCccccccccccceeEEEEccCCC--EEEEEcCCeEEEEEeeCCCCCeeeEeeecccc------cc-----------c
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLR------PK-----------L 390 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~------~~-----------~ 390 (515)
+..|...+.+++|+|+++ +++++.++.+.+|++.. ..+...+....... .. .
T Consensus 266 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 266 --------LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp --------ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred --------eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 344557899999999987 57778888899999875 33322221100000 00 0
Q ss_pred cccc-----------cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 391 CDLY-----------ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 391 ~~~~-----------~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.... ....-..+.+++|+|+|++|++++ |+.+.+|++.... ..+..++..++|+|+++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~------~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR------NKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE------EEEEEECSEEEECTTSSCEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc------ccCCCceEEEEEeCCCCeEEE
Confidence 0000 001111356899999999999988 8999999986431 123457889999999999999
Q ss_pred ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC---CEEEE-EcCCcEEEEe
Q 010206 460 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIAC-AASNSLYMYY 514 (515)
Q Consensus 460 ~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~la~-~~~~~~~i~~ 514 (515)
++.++.+++++ ...+|...+.+++|+|++ .+|++ +.++.+.+|+
T Consensus 410 ~~~~g~v~l~~-----------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 410 IDETGQIKYYK-----------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp ECTTCCEEEEE-----------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred EeCCCcEEEEE-----------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 99999999932 112356788999999998 45555 5566688886
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=284.50 Aligned_cols=301 Identities=13% Similarity=0.163 Sum_probs=228.6
Q ss_pred ccccccceEEEEECCCC-CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g-~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~--------- 118 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG--------- 118 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT---------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC---------
Confidence 35799999999999999 99999999999999999876532 222234676
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+|. ++.+|++++.|+.|++||+.+........
T Consensus 119 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------ 158 (383)
T 3ei3_B 119 ---DAITGMKFNQF-NTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------------------------ 158 (383)
T ss_dssp ---CBEEEEEEETT-EEEEEEEEETTTEEEEEETTSCEEEEEEC------------------------------------
T ss_pred ---CceeEEEeCCC-CCCEEEEEeCCCEEEEEECCCCceEEEec------------------------------------
Confidence 88999999652 45799999999999999998643221110
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
...|...|.+++|+|++++|+++ .|+.|++||++ .+..
T Consensus 159 ----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~ 197 (383)
T 3ei3_B 159 ----------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI 197 (383)
T ss_dssp ----------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE
T ss_pred ----------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE
Confidence 13456789999999999999998 89999999995 3322
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++|+|++..+|++++.|+.|++||+++.+....... ..+|...|.++
T Consensus 198 ~--------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~~ 256 (383)
T 3ei3_B 198 F--------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA-------------EMPHEKPVNAA 256 (383)
T ss_dssp E--------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE-------------EEECSSCEEEE
T ss_pred E--------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE-------------EecCCCceEEE
Confidence 2 56779999999999999833999999999999999988542211111 12466899999
Q ss_pred EEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc-cccc-CCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 349 KFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC-DLYE-NDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 349 ~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
+|+| ++++|++++. +.|++||+++ .+....+..|......-. .+.. -.....+..++|+|++++ +++.||.|+
T Consensus 257 ~~s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 257 YFNPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp EECTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred EEcCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEE
Confidence 9999 9999999875 9999999997 777777776653211000 0000 000012335777888877 888999999
Q ss_pred EEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.+++ ....+.+ |...+..++|+|++++|++++ |+.|++
T Consensus 334 iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 334 IYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 99999874 4567766 567777889999999999997 999999
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=283.53 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=196.9
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|+|++||+|+.|+.|+|||+.++... ....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------------~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------------LIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------EEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------EEEEEcCCC----------
Confidence 3589999999999999999999999999999998765421 345678898
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|++..++.+|++++.|++|++||+++++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999975445679999999999999998765311110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. +.+|...|.+++|+|+ +.+|+++ .|++|++||++....
T Consensus 98 -------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~ 139 (316)
T 3bg1_A 98 -------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ 139 (316)
T ss_dssp -------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC
T ss_pred -------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC
Confidence 0 3578889999999998 7899998 899999999986532
Q ss_pred ccceecccCccccccCCceEEEEEecCC----------------CcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.... ..+.+|...+.+++|+|+. ..+|++|+.|+.|++||++..... ..
T Consensus 140 ~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~------ 204 (316)
T 3bg1_A 140 WEVK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KE------ 204 (316)
T ss_dssp EEEC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EE------
T ss_pred ccee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----ce------
Confidence 1100 1456789999999999972 158999999999999999654210 00
Q ss_pred CCccccccccccceeEEEEccCC----CEEEEEcC-CeEEEEEeeCCC---CCeeeEeeeccccccccccccCCCcccee
Q 010206 332 PGTRSFFTEIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~----~~l~s~~~-~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
...+.+|...|.+++|+|++ ++|++++. ++|++||+.... .....+..|... |+
T Consensus 205 ---~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~ 266 (316)
T 3bg1_A 205 ---EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VW 266 (316)
T ss_dssp ---EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EE
T ss_pred ---eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EE
Confidence 11256788999999999986 78999875 999999997521 122334444332 56
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+++|+|++++|++++.|+.|++|+...
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999999999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=288.16 Aligned_cols=313 Identities=11% Similarity=0.192 Sum_probs=245.4
Q ss_pred ccccccce-EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v-~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.| +|+ +++|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 45788875 554 4568999999999999999998765 335677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|. +..+++++.|++|++||+.+++....
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------- 194 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT-------------------------------------- 194 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE--------------------------------------
Confidence 889999994 35999999999999999988753221
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+.+|...|.+++|+ ++.|+++ .|+.|++||+++++..
T Consensus 195 ----------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 195 ----------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp ----------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred ----------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence 24677889999985 5678887 8999999999876644
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...|.+++| ++ ..+++|+.||.|++||+++++... .+.+|...|.++
T Consensus 233 ~--------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~v~~~ 285 (445)
T 2ovr_B 233 H--------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLH----------------TLQGHTNRVYSL 285 (445)
T ss_dssp E--------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEE----------------EECCCSSCEEEE
T ss_pred E--------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeE----------------EecCCCCceEEE
Confidence 3 45679999999999 55 789999999999999998876432 145567889999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.| ++.++++++. +.|++||+.+ ++++..+..|... +.++. +++++|++|+.||.|++||
T Consensus 286 ~~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~--~~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 286 QF--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL---------------TSGME--LKDNILVSGNADSTVKIWD 345 (445)
T ss_dssp EE--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC---------------EEEEE--EETTEEEEEETTSCEEEEE
T ss_pred EE--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc---------------EEEEE--EeCCEEEEEeCCCeEEEEE
Confidence 99 7889999865 9999999986 7888888777654 22444 4678999999999999999
Q ss_pred cCCCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCcc-cc-CCccccccCCeeEEEEcCCCCEE
Q 010206 428 CSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL-DA-NGNAFDFSMKLLHLAWHPSENSI 502 (515)
Q Consensus 428 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l 502 (515)
+.++. ....+.. |..++.+++++ ++++++|+.||.|++++-...... .+ ......+.+.|.+++|+|++.+|
T Consensus 346 ~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 346 IKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp TTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred CCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 98874 4466665 88899999995 579999999999999432211100 01 01113567889999999999999
Q ss_pred EEEcCCc-----EEEEe
Q 010206 503 ACAASNS-----LYMYY 514 (515)
Q Consensus 503 a~~~~~~-----~~i~~ 514 (515)
|+++.|+ +.+|+
T Consensus 423 a~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSSSSCCEEEEEE
T ss_pred EEcccCCCCccEEEEEE
Confidence 9999887 77775
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=284.97 Aligned_cols=301 Identities=14% Similarity=0.196 Sum_probs=220.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++| ++++++|++++ ++++++|++.+++............ .+...+
T Consensus 65 ~~V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~---------------------~~~~~~------ 114 (393)
T 1erj_A 65 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------KDPENL------ 114 (393)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred CEEEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc---------------------cccccc------
Confidence 88999999 55677888876 6899999999887655433221000 000000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.......+...|.+++|+|++++|++| .|+.|++||+++.+...
T Consensus 115 ---------------------------------~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~-- 159 (393)
T 1erj_A 115 ---------------------------------NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-- 159 (393)
T ss_dssp ---------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred ---------------------------------cccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 000012344569999999999999998 89999999998765432
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|+|++ ..|++++.|+.|++||+++++... .+ .+...+.+++|+
T Consensus 160 ------~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~----~~-------------~~~~~v~~~~~~ 215 (393)
T 1erj_A 160 ------ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL----TL-------------SIEDGVTTVAVS 215 (393)
T ss_dssp ------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----EE-------------ECSSCEEEEEEC
T ss_pred ------EEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE----EE-------------EcCCCcEEEEEE
Confidence 567899999999999998 899999999999999999876421 11 123579999999
Q ss_pred c-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
| ++++|++|+. +.|++||+.+ +..+..+....... ...-..|++++|+|++++|++|+.|+.|++||+.
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~--------~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESG--------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTT-CCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCC--------CCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 9 8999999875 9999999986 66665552211000 0011126699999999999999999999999997
Q ss_pred CCC-----------cceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcC-
Q 010206 430 EGS-----------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP- 497 (515)
Q Consensus 430 ~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 497 (515)
+.. .....+.+|...|.+++++|++++|++|+.|+.|++++.... .......+|...|.+++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSS
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCC
Confidence 642 123567799999999999999999999999999999432211 12223346889999999986
Q ss_pred -----CCCEEEEEcCCc-EEEEe
Q 010206 498 -----SENSIACAASNS-LYMYY 514 (515)
Q Consensus 498 -----~~~~la~~~~~~-~~i~~ 514 (515)
++++||+++.|+ +.+|+
T Consensus 364 ~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 364 SSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEE
T ss_pred cCcCCCCCEEEEECCCCcEEECc
Confidence 688999888665 88986
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=288.69 Aligned_cols=305 Identities=11% Similarity=0.085 Sum_probs=214.8
Q ss_pred ccceEEEEECCCCCeEEeecC-------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.-||.|++|+|||++||+|+. ++.|++|++........ ..+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~--~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK--EQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH--HHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee--eee-----------eeeeEEEccCCC-------
Confidence 358999999999999999864 33699999876543200 000 000112355666
Q ss_pred cccccceeEEEEEeecCCCcEEEe-----------eeCCCeEEEEEccCCee--EEEeeccCCcccCCCCCCccCCCCcC
Q 010206 108 SLEIEEKINKIRWCQSANSALYLL-----------STNDKTIKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~-----------~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
..|.++++. . ..+++ ++.|+.+++|++..... ........... ......+.
T Consensus 74 -----~~v~s~~~~--~--~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 137 (365)
T 4h5i_A 74 -----DSPTAIDAS--K--GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS-TNADDYTK------ 137 (365)
T ss_dssp -----CCCCEEEEE--T--TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC-CCTTCCEE------
T ss_pred -----CceEEEEeC--C--CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec-CCcccCEE------
Confidence 678888773 2 24444 45688899999876432 22211111110 00011122
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCC
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 254 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d 254 (515)
.++|+|||+.+.+ ++++.|+.|++|| +.. .++... ..|...|.+++|+|++++|+++.+
T Consensus 138 -~v~fSpDg~~la~----------as~~~d~~i~iwd--~~~------~~~~~~--~~~~~~V~~v~fspdg~~l~s~s~ 196 (365)
T 4h5i_A 138 -LVYISREGTVAAI----------ASSKVPAIMRIID--PSD------LTEKFE--IETRGEVKDLHFSTDGKVVAYITG 196 (365)
T ss_dssp -EEEECTTSSCEEE----------EESCSSCEEEEEE--TTT------TEEEEE--EECSSCCCEEEECTTSSEEEEECS
T ss_pred -EEEEcCCCCEEEE----------EECCCCCEEEEeE--CCC------CcEEEE--eCCCCceEEEEEccCCceEEeccc
Confidence 6899999998722 4677899999999 333 222223 257788999999999999999966
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC----eEEEEecCcccccccccceeeecc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+.+.+|+..+++..... ....|...|.+++|+|++ ..+++++.|+ .+++|++..........
T Consensus 197 ~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~------- 262 (365)
T 4h5i_A 197 SSLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRS------- 262 (365)
T ss_dssp SCEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEE-------
T ss_pred eeEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceee-------
Confidence 66777777766544321 345688899999999999 8999998887 68889987654211101
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEc
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..+.+|..+|++++|+|+|++||+|+. ++|+|||+.+ ++++..+ .+|... |++++|+
T Consensus 263 -----~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~---------------V~~v~fS 321 (365)
T 4h5i_A 263 -----KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFA---------------ITEVTIS 321 (365)
T ss_dssp -----EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSC---------------EEEEEEC
T ss_pred -----eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCC---------------EEEEEEC
Confidence 124567789999999999999999875 9999999986 7777765 567755 6699999
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|||++||+||.|++|+||++...
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=279.53 Aligned_cols=304 Identities=14% Similarity=0.173 Sum_probs=228.0
Q ss_pred cccccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec--ccCCCcccc
Q 010206 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~ 105 (515)
.+|.++|++++|+|+ ...+++++.++.|+||++.+++.. ..+..+ ..|.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~----- 69 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD----- 69 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence 479999999999984 445666666779999999866532 011111 1233
Q ss_pred cccccccceeEEEEEeecCC--CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCC
Q 010206 106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g 183 (515)
..|++++|+|... +.+|++++.|+.|++||+.+++....
T Consensus 70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------- 110 (366)
T 3k26_A 70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------- 110 (366)
T ss_dssp -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence 7799999987644 67999999999999999987653221
Q ss_pred CccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEe
Q 010206 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWN 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd 261 (515)
+.+|...|.+++|+| ++++|+++ .|+.|++||
T Consensus 111 ----------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 111 ----------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp ----------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ----------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 246788999999999 89999998 899999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce--ee----------ec
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL--FE----------EQ 329 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~----------~~ 329 (515)
+++++....+. .+..|...|.+++|+|++ .+|++++.||.|++||+++++........ +. ..
T Consensus 145 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 145 IQTDTLVAIFG-----GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp TTTTEEEEEEC-----STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred eecCeEEEEec-----ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 98765443211 236799999999999998 89999999999999999987543211000 00 00
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC-------------eeeEeeecccccccccccc
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP-------------VATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 395 (515)
..........+|...|.+++|+ +++|++++. +.|++||+.+.... +..+..|...
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 287 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD--------- 287 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC---------
T ss_pred eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc---------
Confidence 0000111234488999999999 778998875 99999999863221 3333333322
Q ss_pred CCCccceeeEEEcCC--CCEEEEecCCCcEEEEecCCCCcc---eeeeccC--CCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 396 NDSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~--~~~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|+|+ +++|++|+.||.|++||+.++... ...+..| ..++..++|+|++++|++++.||.|++
T Consensus 288 ------v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 288 ------IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp ------SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ------EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 458899999 999999999999999999987432 2467777 799999999999999999999999998
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=291.42 Aligned_cols=321 Identities=12% Similarity=0.180 Sum_probs=242.5
Q ss_pred cccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCcccee
Q 010206 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (515)
Q Consensus 13 ~~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (515)
....|++...-. ........|...|++++|+|++++|++|+.||.|++|++.+... ....
T Consensus 46 ~v~iw~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-------------------~~~~ 105 (416)
T 2pm9_A 46 SLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-------------------AINS 105 (416)
T ss_dssp CCEEEESSSGGG-CSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-------------------CCCE
T ss_pred eEEEEEccCCCC-CcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-------------------cccc
Confidence 345687764211 11334467999999999999999999999999999999876321 0113
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+|. ++.+|++++.|+.|++||+.+++...... .
T Consensus 106 ~~~~~~h~------------~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~----------------- 154 (416)
T 2pm9_A 106 MARFSNHS------------SSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNY-T----------------- 154 (416)
T ss_dssp EEECCCSS------------SCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTC-C-----------------
T ss_pred hhhccCCc------------cceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccc-c-----------------
Confidence 45677787 88999999653 25699999999999999998764100000 0
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFIS 251 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s 251 (515)
.... .....|...|.+++|+|+ +.+|++
T Consensus 155 -----------------------------------------~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 155 -----------------------------------------PLTP----------GQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp -----------------------------------------CBCC----------CCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred -----------------------------------------cccc----------ccccCCCCCeeEEEeCCCCCcEEEE
Confidence 0000 002467889999999999 788999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC---eEEEEecCcccccccccceee
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+ .|+.|++||+++.+....+. . .....+|...|.+++|+|++..++++++.|+ .|++||++++....
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~------- 254 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLS-Y-TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL------- 254 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEEC-C-CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------
T ss_pred EcCCCCEEEEECCCCCcceEEe-c-cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------
Confidence 8 89999999998765443221 0 0111234788999999999757999999999 99999998863211
Q ss_pred eccCCCcccccc-ccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
..+. +|...|.+++|+| ++++|++++. +.|++||+.+ ++++..+..|... |++
T Consensus 255 --------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~---------------v~~ 310 (416)
T 2pm9_A 255 --------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNW---------------CFK 310 (416)
T ss_dssp --------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSC---------------CCC
T ss_pred --------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCc---------------eEE
Confidence 1234 6778999999999 9999999875 9999999996 7888888877755 458
Q ss_pred EEEcCCC-CEEEEecCCCcEEEEecCCCCcceee----------------------------------eccCCCceeeEE
Q 010206 405 CCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQV 449 (515)
Q Consensus 405 ~~~s~~~-~~l~s~s~dg~i~iw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~ 449 (515)
++|+|++ ++|++++.||.|++|++.+....... ...|..++..++
T Consensus 311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
T 2pm9_A 311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH 390 (416)
T ss_dssp EEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence 9999999 89999999999999999876433211 111677888999
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
|+|+|++|++++.|+.|++
T Consensus 391 ~s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 391 WAFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp EETTTEEECBCTTSSCBCC
T ss_pred EeeCCeEEEEeCCCCeEEE
Confidence 9999999999999999998
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=286.72 Aligned_cols=330 Identities=10% Similarity=0.090 Sum_probs=230.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+| ++|++|+.||.|+||++.+++.. ..+.....+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 458999999999999 79999999999999999876521 1122345566787
Q ss_pred ccceeEEEEEeec--CCC---cEEEeeeCCCeEEEEEccCCee-----EEEeeccCCcccCCCCCCccCCCCcCCCceee
Q 010206 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (515)
Q Consensus 111 ~~~~v~~l~~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (515)
..|++++|+|. .++ .+|++++.|+.|++|++.+++. .......... ...+.+. .+.|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence 88999999764 125 6999999999999999998763 3322221000 0013333 78999
Q ss_pred ----cCCCc-cccccccCCCCCCCCCCCcccEEeeeeeecc------cccccccceeeeee------ccCcCCeEEEEec
Q 010206 181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNN 243 (515)
Q Consensus 181 ----~~g~~-l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~~~~------~~~~~~v~~~~~~ 243 (515)
|+++. + ++++.++.|++|| +.. .+... ..+...+. ..|...|.+++|+
T Consensus 131 ~~~~~~~~~~l------------~~~~~dg~i~iwd--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ 195 (397)
T 1sq9_A 131 ASNDRLLSHRL------------VATDVKGTTYIWK--FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDIS 195 (397)
T ss_dssp CCC----CEEE------------EEEETTSCEEEEE--EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEEC
T ss_pred eccCCCCceEE------------EEEeCCCcEEEEe--CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEEC
Confidence 99998 8 9999999999999 444 22111 01110211 4588899999999
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccc---c---CCceEEEEEecCCCcEEEEEecC---CeEEEEec
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDM 313 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~p~~~~~l~~~~~d---g~i~~wd~ 313 (515)
|++ .|+++ .|+.|++||+++.+... .+.. | ...|.+++|+|++ .+|++++.| +.|++||+
T Consensus 196 ~~~-~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 196 ERG-LIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp TTS-EEEEECTTSEEEEEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEET
T ss_pred CCc-eEEEEeCCCcEEEEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEEC
Confidence 999 99988 89999999998765443 3455 7 8999999999998 899999999 99999999
Q ss_pred CcccccccccceeeeccCCC-ccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe------eecc
Q 010206 314 RQSALCDTHSKLFEEQEAPG-TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ------VHEH 385 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~------~~~~ 385 (515)
++++... .+.....+. .......|...|.+++|+|++++|++++. +.|++||+.+ ++++..+. .|..
T Consensus 266 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~ 340 (397)
T 1sq9_A 266 EFGERIG----SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEE 340 (397)
T ss_dssp TTCCEEE----EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGG
T ss_pred CCCcccc----eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchh
Confidence 8876432 222100000 00001117789999999999999999875 9999999986 77778877 4410
Q ss_pred ccccccccccCCCccceeeEEEcCCC----------CEEEEecCCCcEEEEecCCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~s~dg~i~iw~~~~~ 431 (515)
....-........-..|++++|+|++ ++|++++.||.|++|+++++
T Consensus 341 ~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 341 DILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 00000000000001236799999998 79999999999999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=279.61 Aligned_cols=287 Identities=12% Similarity=0.177 Sum_probs=221.3
Q ss_pred cccccceEEEEECCCCC-eEEeecC---CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIISAIEFDKSGD-HLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~-~lasg~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.+|.+.|++++|+|+++ ++++|+. ||.|+||++.+++.. . ....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~---------------------~-~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK---------------------L-LREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE---------------------E-EEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc---------------------c-eeeeccc-------
Confidence 46999999999999996 4556666 999999999876532 1 1122455
Q ss_pred cccccceeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|.+++|+|.. ++.+|++++.|+.|++||+.+++ ....
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---------------------------------- 106 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS---------------------------------- 106 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE----------------------------------
Confidence 789999996542 25799999999999999998754 1100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEE------EecCCCCEEEEe-CCCcEE
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI------SNNSDGETFISA-DDLRIN 258 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~s~-~d~~i~ 258 (515)
+.+|...|.++ +|+|++++|+++ .|+.|+
T Consensus 107 --------------------------------------------~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 107 --------------------------------------------VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp --------------------------------------------ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred --------------------------------------------EEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 34677888888 467899999998 899999
Q ss_pred EEeCCCCCcccceecccCccccc-cCCceEEEE----EecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 259 LWNLEISNQSFNIVDVKPANMED-LTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 259 iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
+||+++.+.....+. ...+ +...+.+++ |+|++ .+|++++.|+.|++||+++++...
T Consensus 143 vwd~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~------------- 204 (357)
T 3i2n_A 143 VWDPRQKDDPVANME----PVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRW------------- 204 (357)
T ss_dssp EECTTSCSSCSEEEC----CCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEeCCCCCCcceecc----ccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceee-------------
Confidence 999987763332211 1111 234789998 67888 899999999999999999876421
Q ss_pred ccccccccccceeEEEEcc---CCCEEEEEcC-CeEEEEEeeCCCCCeeeEe-----eeccccccccccccCCCccceee
Q 010206 334 TRSFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~---~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
...|...|.+++|+| ++.+|++++. +.|++||++. .++...+. .|... |++
T Consensus 205 ----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~ 264 (357)
T 3i2n_A 205 ----ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQ 264 (357)
T ss_dssp ----EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEE
T ss_pred ----ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEE
Confidence 234557899999999 8999999875 9999999986 55555444 44433 569
Q ss_pred EEEcCCCC-EEEEecCCCcEEEEecCCCCc------------------ceeeeccCCCceeeEEECCCCCeeE-eecCCC
Q 010206 405 CCLSGDGG-RVATGSYSNLFRVFGCSEGSA------------------ESTTLEASKNPMRRQVQTPSRPSRP-LGSLSG 464 (515)
Q Consensus 405 ~~~s~~~~-~l~s~s~dg~i~iw~~~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~ 464 (515)
++|+|+++ +|++++.||.|++||++++.. ....+..|..+|.+++|+|++++|+ +++.|+
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 99999999 899999999999999986532 3467789999999999999999998 899999
Q ss_pred eEEE
Q 010206 465 VVRR 468 (515)
Q Consensus 465 ~v~l 468 (515)
.|++
T Consensus 345 ~i~i 348 (357)
T 3i2n_A 345 TVRV 348 (357)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 9999
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=286.47 Aligned_cols=345 Identities=12% Similarity=0.127 Sum_probs=238.2
Q ss_pred cccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.+.+... .++....+ .|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 57899999999999 99999999999999999987622110 00011111 355
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc---CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|++++|+ +++.+|++++.|++|++||+. .++.......+
T Consensus 112 --~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------- 155 (437)
T 3gre_A 112 --STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-------------------------------- 155 (437)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--------------------------------
T ss_pred --CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--------------------------------
Confidence 889999995 467799999999999999995 44332222111
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc--CcCCeEEEE--ecCCCCEEEEe-CCCcEEEEeC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA--HDYHINSIS--NNSDGETFISA-DDLRINLWNL 262 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~--~~~~~~~l~s~-~d~~i~iwd~ 262 (515)
.++-.. ... +...+.++. +++++.+|+++ .|+.|++||+
T Consensus 156 ------------------~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 199 (437)
T 3gre_A 156 ------------------CIRKIN------------------LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDI 199 (437)
T ss_dssp ------------------EEEEEE------------------GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEET
T ss_pred ------------------eeEEEE------------------ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 000000 111 556677777 67899999998 8999999999
Q ss_pred CCCCcccceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 263 EISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
++.+... .+.. |...|++++|+|++ .+|++|+.||.|++||+++++... .+. ..
T Consensus 200 ~~~~~~~--------~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~----~~~-----------~~ 255 (437)
T 3gre_A 200 RTLERLQ--------IIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIR----SWS-----------FG 255 (437)
T ss_dssp TTCCEEE--------EEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEE----EEB-----------CT
T ss_pred CCCeeeE--------EEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEE----EEe-----------cC
Confidence 8776543 3344 78999999999998 999999999999999999876432 111 14
Q ss_pred cccceeEEEEcc----CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc-----------ccCCCccceee
Q 010206 341 IIASISDIKFAR----NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL-----------YENDSIFDKFE 404 (515)
Q Consensus 341 ~~~~i~~~~~s~----~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~ 404 (515)
|..+|.+++|+| ++++|++|+. +.|++||+.+ ++.+..+.+|........-. ........|++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 557899996654 6789999875 9999999986 78888888775433221110 00112334679
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC---CceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCC
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 481 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~ 481 (515)
++|+ ++++|++|+.||.|++||+.+++ ....+.+|. ..+....+++...+++... + .... ....
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~-~~~~ 401 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELS-SSKAVISPSRFSDVFIPTQVTANLTMLLRKM-K---------RTST-HSVD 401 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGG-GCEEEECC--CCCEEEEEEEETTEEEEEEEC-C------------------
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcc-cceEEecccccCceEEEEEeecceEEEEEec-c---------cccc-cccC
Confidence 9999 88999999999999999999874 446666653 3344455555544443330 0 0000 0111
Q ss_pred ccccccCCeeEEEEcCC--CCEEEEEcCCc-EEEEe
Q 010206 482 NAFDFSMKLLHLAWHPS--ENSIACAASNS-LYMYY 514 (515)
Q Consensus 482 ~~~~~~~~i~~~~~s~~--~~~la~~~~~~-~~i~~ 514 (515)
....|...|++++|+++ +.+|++++.+| +.||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 22347899999999998 77899888766 88884
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=279.99 Aligned_cols=316 Identities=15% Similarity=0.193 Sum_probs=228.1
Q ss_pred ccccccceEEEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.++|++++|+| ++++||+|+.||.|+||++.+++......... . .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---V-------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE---E-------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc---c-------ccccccccccCC---------
Confidence 456999999999999 99999999999999999998776431100000 0 000000113455
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+|. ++.+|++++.|+.|++||+.+++.....
T Consensus 100 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------------------------------------- 138 (408)
T 4a11_B 100 ---YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVF------------------------------------- 138 (408)
T ss_dssp ---SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEE-------------------------------------
T ss_pred ---CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceec-------------------------------------
Confidence 88999999652 4568999999999999999887643322
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
.+...+.++.+++ ++.+++++ .|+.|++||++++
T Consensus 139 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 139 ------------------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp ------------------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred ------------------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 1335567777777 45588888 8999999999876
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+..|...|.+++|+|++..+|++|+.||.|++||++++.......................+|...|
T Consensus 177 ~~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 177 SCSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp CCCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred ceee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence 5442 55679999999999999844799999999999999988753322111111111122233456788999
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEE
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 424 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~ 424 (515)
.+++|+|++++|++++. +.|++||+.+ ++....+..+..... ...+........+..+++++.|+.|+
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGSTIA 317 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCEEE
Confidence 99999999999999865 9999999986 554443332221100 00011222233455667778899999
Q ss_pred EEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.++ .....+.+|..+|.+++|+|++++|++++.||.|++
T Consensus 318 v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 318 VYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp EEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 9999987 556889999999999999999999999999999999
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=287.54 Aligned_cols=321 Identities=12% Similarity=0.216 Sum_probs=244.6
Q ss_pred ccccccce-EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v-~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.| +|+.+ ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 45788775 66666 56799999999999999987765 346677888
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceee--cCCCccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGE 187 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~g~~l~ 187 (515)
..|.+++|+ +++ .+++++.||+|++||+.+++.......+ .+.+. .+.++ ++++.+
T Consensus 163 ---~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~~~~~~~~l- 220 (464)
T 3v7d_B 163 ---GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVR-------CLDIVEYKNIKYI- 220 (464)
T ss_dssp ---SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEEEESSSCEEE-
T ss_pred ---cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEECCC--------CCccE-------EEEEecCCCCCEE-
Confidence 889999995 444 8999999999999999998866655433 23333 66676 577777
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccc----------------eeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
++++.++.+++|| +.......... .......+|...|.++ ++++++|++
T Consensus 221 -----------~s~s~d~~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~ 285 (464)
T 3v7d_B 221 -----------VTGSRDNTLHVWK--LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVS 285 (464)
T ss_dssp -----------EEEETTSCEEEEE--CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEE
T ss_pred -----------EEEcCCCcEEEee--CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEE
Confidence 9999999999999 44332211000 0122246788888877 577889999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .|+.|++||+++.+... .+.+|...|.+++|+|++ ..+++|+.||.|++||+++++...
T Consensus 286 ~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~---------- 346 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY---------- 346 (464)
T ss_dssp EETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEE----------
T ss_pred EeCCCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEE----------
Confidence 8 89999999998765443 556799999999999998 899999999999999999876532
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.+.+|...|.++.|+ +++|++++. |.|++||+.+ ........ +... +..++|++
T Consensus 347 ------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~ 401 (464)
T 3v7d_B 347 ------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYV 401 (464)
T ss_dssp ------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEE
T ss_pred ------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEe
Confidence 145677899999998 578888765 9999999986 44333332 2211 23789999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++++|++|+ ||.|++||+++++.+...+..|..++.+++++ .+..+++++.|+.+.+
T Consensus 402 ~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 402 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 999999998 89999999999855544577889999999997 4455666667776665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=288.38 Aligned_cols=301 Identities=11% Similarity=0.125 Sum_probs=215.9
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.|.++|++++|+|+|++||+|+.||.|+||++.++.. .....+.+|.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------ 55 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------ 55 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------
Confidence 3567999999999999999999999999999986521 1345677887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++|+ +++++|++++.|++|++||+.+++ ....
T Consensus 56 ~~v~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------------------------------- 93 (377)
T 3dwl_C 56 KIVTCVDWA--PKSNRIVTCSQDRNAYVYEKRPDGTWKQT---------------------------------------- 93 (377)
T ss_dssp SCEEEEEEC--TTTCCEEEEETTSSEEEC------CCCCE----------------------------------------
T ss_pred ceEEEEEEe--CCCCEEEEEeCCCeEEEEEcCCCCceeee----------------------------------------
Confidence 889999995 557799999999999999998764 0000
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+.+|...|.+++|+|++++|+++ .|+.|++||+++.+....
T Consensus 94 ------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 94 ------------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp ------------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred ------------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 0034688899999999999999998 899999999987653111
Q ss_pred eecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC--CCccccccccccceeE
Q 010206 271 IVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTRSFFTEIIASISD 347 (515)
Q Consensus 271 ~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~ 347 (515)
. ..+.. |...|.+++|+|++ ++|++++.|+.|++||++................. ......+ +|...|.+
T Consensus 138 ~-----~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 210 (377)
T 3dwl_C 138 S-----KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA 210 (377)
T ss_dssp C-----EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred e-----eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence 1 14455 89999999999998 89999999999999999754422111000000000 0011123 78899999
Q ss_pred EEEccCCCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 348 IKFARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 348 ~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
++|+|++++|++++. +.|++||+.+ ++. +..+..|... |.+++|+|++++|++|+.|+.
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSE
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcE
Confidence 999999999999875 9999999997 555 6677766654 569999999999999987766
Q ss_pred EEEEecCCCC-ccee--------------------------------------------------eeccCCCceeeEEEC
Q 010206 423 FRVFGCSEGS-AEST--------------------------------------------------TLEASKNPMRRQVQT 451 (515)
Q Consensus 423 i~iw~~~~~~-~~~~--------------------------------------------------~~~~~~~~v~~~~~~ 451 (515)
+ +|+....+ .... ....|...|+++.+.
T Consensus 275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~ 353 (377)
T 3dwl_C 275 I-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY 353 (377)
T ss_dssp E-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEE
T ss_pred E-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEecc
Confidence 6 66654221 0000 011388999999876
Q ss_pred CCCC----eeEeecCCCeEEE
Q 010206 452 PSRP----SRPLGSLSGVVRR 468 (515)
Q Consensus 452 ~~~~----~l~s~~~d~~v~l 468 (515)
+... .++|++.||.|++
T Consensus 354 ~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 354 AGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp EEETTEEEEEEEEETTSEEEE
T ss_pred CCCCCceEEEEeecCCCcEEE
Confidence 5443 5999999999998
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=282.05 Aligned_cols=291 Identities=14% Similarity=0.194 Sum_probs=229.0
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
|.+.|++++|+|++++|++|+.||.|++|+. +++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCC-----------------------eeeeccCCC------------c
Confidence 6889999999999999999999999999993 322 335567777 8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|.+++|+ +++.+|++++.|+.|++||+.+++............
T Consensus 151 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 194 (425)
T 1r5m_A 151 PIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGG---------------------------------- 194 (425)
T ss_dssp CEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence 89999995 567799999999999999999887655443321100
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
..+.. .........+.+++|++++. ++++ .++.|++||+++.+...
T Consensus 195 -----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~--- 241 (425)
T 1r5m_A 195 -----------SSINA------------------ENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG--- 241 (425)
T ss_dssp ----------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE---
T ss_pred -----------cceee------------------ccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee---
Confidence 00000 00122334478889998875 5555 89999999998765432
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++... .+.+|...|.+++|+|
T Consensus 242 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~----------------~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 242 -----KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQN----------------CFYGHSQSIVSASWVG 299 (425)
T ss_dssp -----EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSE----------------EECCCSSCEEEEEEET
T ss_pred -----eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccce----------------EecCCCccEEEEEECC
Confidence 456789999999999998 899999999999999998875421 1345668899999999
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
++ ++++++. +.|++||+.+ ++.+..+..|... +.+++|+|++++|++++.||.|++||+.++
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred CC-EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99 7777664 9999999986 7777777766544 569999999999999999999999999876
Q ss_pred C-------------------cceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 S-------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~-------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
. .....+..|.. ++..++|+|++++|++++.||.|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 3 05578888876 9999999999999999999999998
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-37 Score=287.79 Aligned_cols=326 Identities=8% Similarity=-0.014 Sum_probs=234.3
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..-...|.+|+|||||+++|+++.|++|+ |.... ..+.+|.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~--------------------------~~l~gh~----------- 52 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA--------------------------KDINCNS----------- 52 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC--------------------------SCCSSBG-----------
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc--------------------------ceecCCC-----------
Confidence 34568999999999999999999999999 63322 2345777
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.+++|+| +| .++.+.+|+.+... ...... ...|. .++|||+|+.+
T Consensus 53 -~~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~~~~~-------~~~V~-------~vawSPdG~~L----- 100 (588)
T 2j04_A 53 -KNLFHVKEFP--LE-------FENKLDFELAQQNG---LLNSQP-------VCYPR-------VCKPSPIDDWM----- 100 (588)
T ss_dssp -GGTEEEEEEC--CC-------CCCTTTTSCCCSSC---SSTTSC-------SCCEE-------EEEECSSSSCE-----
T ss_pred -ccEEEEEECC--CC-------CcceEEEEeCCCce---EeecCC-------CCcEE-------EEEECCCCCEE-----
Confidence 7899999965 44 45555555543222 111110 23344 88999999999
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-----CeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-----HINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
++++.+|.+++|| .. . +... +. |.. .|.+++|+|||++|++| .||+|++||+.++
T Consensus 101 -------As~s~dg~V~iwd--~~---~-----~l~~-l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 101 -------AVLSNNGNVSVFK--DN---K-----MLTN-LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp -------EEEETTSCEEEEE--TT---E-----EEEE-CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred -------EEEeCCCcEEEEe--CC---c-----eeee-cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999999998 21 1 2222 23 444 59999999999999999 8999999999875
Q ss_pred Ccc-c---ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 266 NQS-F---NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 266 ~~~-~---~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
... . .+..++ ....+|...|.+++|+|++ +++++.|+.|++||+..+... +....+ ..+|
T Consensus 162 ~l~~~~~i~l~ti~-~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL-----------~~~h 225 (588)
T 2j04_A 162 SENTPEFYFESSIR-LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMI-----------QNAS 225 (588)
T ss_dssp TTTCCCCEEEEEEE-CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEE-----------ECCC
T ss_pred ccccccceeeeeee-cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeee-----------cccc
Confidence 420 0 011000 1236688999999999986 888999999999999776521 000111 1346
Q ss_pred ccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCCEEEEecC
Q 010206 342 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSY 419 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~s~ 419 (515)
...|.+++|+ |+.|+++++++|++||+.. ++......+|... +..++| +||+..|++++.
T Consensus 226 ~~~V~svaFs--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~---------------V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLEN---------------FHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSC---------------CCEEEETTCSSCEEEEECSS
T ss_pred cCcEEEEEEE--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCce---------------EEEEEeeeCCCCCEEEEEcC
Confidence 6789999999 6899998889999999984 4332223256654 458999 999999999999
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
||+ ++|... .+.++|++..+++. |+++++ |+....++ ..++....|.+++|||||
T Consensus 288 dG~-klw~~d-----------------~~~~spd~~l~a~~--d~~v~l---W~~~g~~l--~~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 288 TSY-KVLLED-----------------ELHVTADNIIAPYL--EKKFKK---WSTIWNEF--NNYETTLVIHGISLSPDG 342 (588)
T ss_dssp CEE-EEEESS-----------------SEEEECCCSSHHHH--HHHHHH---TTTTTTSS--SSSCCEEEEEEEEECTTS
T ss_pred CCC-EEEeec-----------------cEEECCCceEEEEc--CCEEEE---EECCCCce--eeeccceEEEEEEECCCC
Confidence 999 999987 25699999988886 888888 33321111 122335679999999999
Q ss_pred CEEEEEc
Q 010206 500 NSIACAA 506 (515)
Q Consensus 500 ~~la~~~ 506 (515)
+.+|+++
T Consensus 343 ~~lA~~~ 349 (588)
T 2j04_A 343 YSIAIVY 349 (588)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=275.14 Aligned_cols=263 Identities=14% Similarity=0.210 Sum_probs=205.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|++++||+|+.||.|+||++..... .....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC----------
Confidence 458999999999999999999999999999999874321 2445677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|++..++.+|++++.|+.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 88999999765557899999999999999998875222211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
...|...|.+++|+|+ +.+|+++ .|+.|++||++....
T Consensus 97 ---------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 97 ---------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred ---------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 2467789999999999 9999998 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEec-------------CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
.... .+..|...|.+++|+| ++ .+|++++.|+.|++||++++.......
T Consensus 138 ~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----------- 199 (379)
T 3jrp_A 138 TSPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE----------- 199 (379)
T ss_dssp CCEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEE-----------
T ss_pred eeeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeE-----------
Confidence 3221 4567899999999999 56 899999999999999998764321111
Q ss_pred cccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 335 RSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
..+.+|...|.+++|+|+ +++|++++. +.|++||+............... .....+++++|+|+
T Consensus 200 -~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~ 267 (379)
T 3jrp_A 200 -STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE-----------KFPDVLWRASWSLS 267 (379)
T ss_dssp -EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS-----------CCSSCEEEEEECSS
T ss_pred -EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc-----------cCCCcEEEEEEcCC
Confidence 124567789999999999 899999875 99999999863222111111000 01112569999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
+++|++++.||.|++|++....
T Consensus 268 g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 268 GNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEEESSSSEEEEEEEETT
T ss_pred CCEEEEecCCCcEEEEeCCCCC
Confidence 9999999999999999998653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=273.31 Aligned_cols=278 Identities=12% Similarity=0.195 Sum_probs=222.7
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 4678999986 5888875 899999999887643 223345666 7899
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+|+| ++++.+|++|+.|++|++||+.+++....
T Consensus 152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~--------------------------------------------- 184 (420)
T 4gga_A 152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 184 (420)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence 9999 55788999999999999999988764322
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
..+|...+.++++ ++..|++| .|+.+++||.........
T Consensus 185 ---------------------------------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~----- 224 (420)
T 4gga_A 185 ---------------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA----- 224 (420)
T ss_dssp ---------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE-----
T ss_pred ---------------------------------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE-----
Confidence 2467778888777 46789998 899999999986654432
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++....... ....|...|.+++|+|++.
T Consensus 225 --~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------~~~~~~~~V~~~~~~p~~~ 289 (420)
T 4gga_A 225 --TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ------------TFTQHQGAVKAVAWCPWQS 289 (420)
T ss_dssp --EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSE------------EECCCSSCEEEEEECTTCT
T ss_pred --EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeee------------eecccCCceeeeeeCCCcc
Confidence 567899999999999999 8999999999999999988754322111 2345668999999999654
Q ss_pred -EEEEE--c-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec--CCCcEEEEecC
Q 010206 356 -HILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCS 429 (515)
Q Consensus 356 -~l~s~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s--~dg~i~iw~~~ 429 (515)
+++++ + |++|++||+.+ +++...+..+.. +.++.|+|+++.+++++ .|+.|++||+.
T Consensus 290 ~~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 290 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp TEEEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred cEEEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence 55543 3 49999999986 777766665442 45899999999988754 79999999999
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
++ ..+.++.+|..+|.+++|+|++++|+||+.|++|+++
T Consensus 353 ~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 353 TM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp TC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred CC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 87 5568999999999999999999999999999999993
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=266.23 Aligned_cols=296 Identities=15% Similarity=0.174 Sum_probs=231.1
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+ +++.+|++++.|+.|++||+.+++....
T Consensus 24 ~~~~l~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------- 69 (369)
T 3zwl_B 24 KAIKLTGHE------------RPLTQVKYN--KEGDLLFSCSKDSSASVWYSLNGERLGT-------------------- 69 (369)
T ss_dssp EEEEEECCS------------SCEEEEEEC--TTSCEEEEEESSSCEEEEETTTCCEEEE--------------------
T ss_pred ccEEEEEee------------ceEEEEEEc--CCCCEEEEEeCCCEEEEEeCCCchhhhh--------------------
Confidence 344577787 899999995 5677999999999999999887653221
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+.+|...|.+++|+|++++|++
T Consensus 70 ----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 70 ----------------------------------------------------------LDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp ----------------------------------------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------hhhcCCcEEEEEEcCCCCEEEE
Confidence 3467889999999999999999
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEecCcccccccccce
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~ 325 (515)
+ .|+.|++||+.+++... .+. +...+.+++|+|++ ..+++++.+ +.|++||++.......
T Consensus 92 ~~~dg~i~iwd~~~~~~~~--------~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~---- 157 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVA--------TWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHE---- 157 (369)
T ss_dssp EETTTEEEEEETTTCCEEE--------EEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCC----
T ss_pred EeCCCeEEEEECCCCcEEE--------Eee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCcccee----
Confidence 8 89999999998776543 222 78889999999998 899999998 9999999987654321
Q ss_pred eeeccCCCcccccccccc--ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 326 FEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
+.... ......+..|.. .+.+++|+|++++|++++. +.|++||+.+..+.+..+..|... |
T Consensus 158 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------v 221 (369)
T 3zwl_B 158 LTKVS-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS---------------I 221 (369)
T ss_dssp EEEEC-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------E
T ss_pred ecccc-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------e
Confidence 11100 111122344445 8999999999999999875 999999998645667777766654 5
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC--------------eEEE
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVRR 468 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--------------~v~l 468 (515)
.+++|+|++++|++++.||.|++||+.++. ....+. +..++..++++|+++++++++.++ .+++
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 699999999999999999999999999874 434554 778899999999999999999988 5666
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
++.... +.......|...|.+++|+|++++|++++.++ +.+|+
T Consensus 300 ~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 300 YHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 222111 12223345789999999999999999888655 88886
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=266.16 Aligned_cols=296 Identities=16% Similarity=0.192 Sum_probs=224.7
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
.+..++++|. +.|++|+|+|. ++++|++|+.|++|++||+.+.+....
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~------------------- 76 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYG------------------- 76 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSE-------------------
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccc-------------------
Confidence 3556789999 99999999653 246999999999999999876531110
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
.+.+. +.+|...|.+++|+|++++|+
T Consensus 77 -----------------------------------------------------~~~~~-l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 77 -----------------------------------------------------IPQRA-LRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp -----------------------------------------------------EEEEE-ECCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------eeeEE-EeCCCCCEEEEEECCCCCEEE
Confidence 01111 468999999999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+.|++|+........ ....+...+..+.+++++ ..|++++.|+.+++||+.......
T Consensus 103 s~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~--------- 164 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYT--------- 164 (340)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE---------
T ss_pred EEcccccceEEeecccceee--------eecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEE---------
Confidence 98 89999999998665432 334567788899999998 899999999999999987654211
Q ss_pred cCCCccccccccccceeEEEEccCC--CEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNG--RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
....+|...+..++|++++ .++++++ ++.|++||+.+ .+.+..+.+|... |++++
T Consensus 165 ------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~---------------v~~~~ 222 (340)
T 4aow_A 165 ------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNHIGHTGY---------------LNTVT 222 (340)
T ss_dssp ------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEECCCSSC---------------EEEEE
T ss_pred ------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEecCCCCc---------------EEEEE
Confidence 1135577889999999864 4667765 49999999986 7777888777654 56999
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC--CC----ccccC
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NS----ALDAN 480 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~--~~----~~~~~ 480 (515)
|+|++++|++|+.||.|++||+.+. .....+.. ...+..+.++|++.+ ++++.|+.|++++-.. .. .....
T Consensus 223 ~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 299 (340)
T 4aow_A 223 VSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVIS 299 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTT-EEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC---
T ss_pred ECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEecccccee
Confidence 9999999999999999999999976 34345544 468999999998755 4566799999933211 10 00111
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
.....|...|++++|+||+++|++++.|+ +.||++
T Consensus 300 ~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 300 TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ----CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 12235788999999999999999988665 899973
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=269.58 Aligned_cols=288 Identities=11% Similarity=0.040 Sum_probs=227.9
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.+.|++++|+|++++|++|+.||.|+||++.++... .....+.+|.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~----------- 56 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK----------- 56 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS-----------
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC-----------
Confidence 379999999999999999999999999999999866511 0112344666
Q ss_pred cceeEEEEEeecCCCc-EEEeeeCCCeEEEEEc-cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 112 EEKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|++++|+| ++. +|++++.|+.|++||+ .+++...
T Consensus 57 -~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~--------------------------------------- 94 (342)
T 1yfq_A 57 -HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA--------------------------------------- 94 (342)
T ss_dssp -SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE---------------------------------------
T ss_pred -CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe---------------------------------------
Confidence 8899999965 578 8999999999999999 7654211
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc--CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCC--
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI-- 264 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~-- 264 (515)
+.+ |...|.+++|+| +..|+++ .|+.|++||+++
T Consensus 95 ----------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~ 133 (342)
T 1yfq_A 95 ----------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp ----------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred ----------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence 234 788999999999 9999998 899999999985
Q ss_pred -------CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccc
Q 010206 265 -------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 265 -------~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 336 (515)
.+... .+. |...|.+++|+|++ +++++.|+.|++||+++ +..... .
T Consensus 134 ~~~~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~--------------~ 187 (342)
T 1yfq_A 134 DGVIAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGT--------------I 187 (342)
T ss_dssp TBCEEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCE--------------E
T ss_pred cccccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccce--------------e
Confidence 33221 233 78899999999874 89999999999999987 442110 0
Q ss_pred cccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCC-----CCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 337 FFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
....|...+.+++|+| +++++++++. |.|++|+++.. .+....+..|..... ..+....|.+++|+|
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSP 261 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECT
T ss_pred eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcC
Confidence 1234557899999999 9999999876 99999999874 277778877754210 001112367999999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEeecCCCe-EEE
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR 468 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~-v~l 468 (515)
++++|++++.||.|++||+.++ .....+..| ..+|.+++ |++++|++++.||. .+.
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred CCCEEEEecCCceEEEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 9999999999999999999987 455788888 99999999 99999999999998 443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=262.91 Aligned_cols=283 Identities=16% Similarity=0.241 Sum_probs=220.7
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
.++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|. ..|++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~~ 72 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYISS 72 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEEE
Confidence 5789999986 788774 899999999887643 122345666 78999
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++| ++++++|++|+.|++|++||+++++.......+... ...+++++..+
T Consensus 73 v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l----------- 122 (318)
T 4ggc_A 73 VAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL----------- 122 (318)
T ss_dssp EEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE-----------
T ss_pred EEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE-----------
Confidence 999 556789999999999999999999877665544221 34566777777
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++++.++.+++|+ ..... .....+.+|...+..+.+++++++|+++ .|+.|++||+++++......
T Consensus 123 -~s~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 189 (318)
T 4ggc_A 123 -SSGSRSGHIHHHD--VRVAE------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 189 (318)
T ss_dssp -EEEETTSEEEEEE--TTSSS------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----
T ss_pred -EEEecCCceEeee--cCCCc------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----
Confidence 8999999999988 22211 1222247899999999999999999998 89999999998765433211
Q ss_pred ccccccCCceEEEEEecCCCcEE--EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 277 ANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
.....+...|.+++++|++...+ ++++.++.|++||.+...... ...+...+..+.|+|++
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------AVDAHSQVCSILWSPHY 252 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------EEECSSCEEEEEEETTT
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------cccceeeeeeeeecccc
Confidence 13455788899999999875554 356678999999998765321 12234679999999999
Q ss_pred CEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 355 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 355 ~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..+++++ ++.|++||+.+ ++++.++.+|... |++++|+|||++|+||+.||+|+|||+.+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9887643 49999999997 8899999988765 669999999999999999999999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-34 Score=261.32 Aligned_cols=274 Identities=16% Similarity=0.185 Sum_probs=222.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 4589999999999 999999999999999999987654 234556676
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+| ++.++++++.|+.|++|++.......
T Consensus 60 --~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~~~~~~---------------------------------------- 95 (313)
T 3odt_A 60 --GFLNSVCYDS--EKELLLFGGKDTMINGVPLFATSGED---------------------------------------- 95 (313)
T ss_dssp --SCEEEEEEET--TTTEEEEEETTSCEEEEETTCCTTSC----------------------------------------
T ss_pred --ccEEEEEECC--CCCEEEEecCCCeEEEEEeeecCCCC----------------------------------------
Confidence 8899999954 67799999999999999987532000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.... +.+|...|.+++| +++.|+++ .|+.|++||. .+...
T Consensus 96 ----------------------------------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~ 136 (313)
T 3odt_A 96 ----------------------------------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY 136 (313)
T ss_dssp ----------------------------------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE
T ss_pred ----------------------------------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE
Confidence 0001 3578889999999 57788888 8999999992 22221
Q ss_pred ceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ 347 (515)
.+..|...+.+++|.| ++ ..+++++.|+.|++||..... .. +.. |...+.+
T Consensus 137 --------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~------~~------------~~~~~~~~i~~ 189 (313)
T 3odt_A 137 --------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKVI------KT------------FSGIHNDVVRH 189 (313)
T ss_dssp --------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEEE------EE------------ECSSCSSCEEE
T ss_pred --------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCceE------EE------------EeccCcccEEE
Confidence 4567899999999998 66 899999999999999943321 11 222 5678999
Q ss_pred EEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 348 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 348 ~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++|+|+++ +++++ ++.|++||+++ ++++..+..|... +++++|+|++ .|++++.||.|++|
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEE
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEE
Confidence 99999998 66655 59999999986 7888888877654 5699999999 58899999999999
Q ss_pred ecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+.++ .....+..|..++..++++|+++ +++++.||.|++
T Consensus 252 d~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 252 SKENG-SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp CTTTC-CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred ECCCC-ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 99987 45578899999999999999998 667899999999
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.51 Aligned_cols=291 Identities=11% Similarity=0.143 Sum_probs=217.2
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCC-cEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
.+.....+.+|. ..|++++|+| ++ .+|++++.|+.|++||+.+++......
T Consensus 62 ~~~~~~~~~~h~------------~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------- 113 (383)
T 3ei3_B 62 SYKLHRTASPFD------------RRVTSLEWHP--THPTTVAVGSKGGDIILWDYDVQNKTSFIQ-------------- 113 (383)
T ss_dssp TCEEEEEECCCS------------SCEEEEEECS--SCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------
T ss_pred ccceEEeccCCC------------CCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCCcccceeee--------------
Confidence 344556677787 8899999965 45 699999999999999998765322211
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DG 246 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 246 (515)
..+|...|.+++|+| ++
T Consensus 114 --------------------------------------------------------------~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 114 --------------------------------------------------------------GMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp --------------------------------------------------------------CCSTTCBEEEEEEETTEE
T ss_pred --------------------------------------------------------------cCCcCCceeEEEeCCCCC
Confidence 236889999999999 77
Q ss_pred CEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccce
Q 010206 247 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 325 (515)
Q Consensus 247 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 325 (515)
++|+++ .|+.|++||++. .....+. ....|...|.+++|+|++ .+|++|+.|+.|++||++. +.. .
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~~----~- 198 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HEI----F- 198 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CEE----E-
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CEE----E-
Confidence 899988 899999999985 2222111 223456889999999998 8999999999999999943 221 1
Q ss_pred eeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCC---CCCeeeEeeeccccccccccccCCCcc
Q 010206 326 FEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
.+.+|...|.+++|+|+++ +|++++. +.|++||+++. ..++..+ .|...
T Consensus 199 -----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~-------------- 252 (383)
T 3ei3_B 199 -----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP-------------- 252 (383)
T ss_dssp -----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC--------------
T ss_pred -----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc--------------
Confidence 1456778999999999999 8888765 99999999862 2233333 44433
Q ss_pred ceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcceeeeccCC-------C----------ceeeEEECCCCCeeEeecC
Q 010206 401 DKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-------N----------PMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 401 ~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-------~----------~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++|+| ++++|++++.|+.|++||++++... ..+..|. . .+..++++|++++ +++.
T Consensus 253 -v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 253 -VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp -EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred -eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 56999999 9999999999999999999987443 4444332 2 2334677788877 8889
Q ss_pred CCeEEEecCCCCCccccCCccc--cccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 463 SGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 463 d~~v~l~~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|+.|++++-... +...... .+...+..++|+|++++|++++++.+.+|+.
T Consensus 329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 999999432211 1111222 2456788889999999999999888999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=278.16 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=202.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++|+|+|.. +.+|++|+.||+|+|||+.+++......
T Consensus 120 ~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------------------------------- 159 (435)
T 4e54_B 120 RRATSLAWHPTH-PSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------------------------------- 159 (435)
T ss_dssp SCEEEEEECSSC-TTCEEEEETTSCEEEECSSCCSCCEEEC---------------------------------------
T ss_pred CCEEEEEEeCCC-CCEEEEEeCCCEEEEEECCCCCceeEEE---------------------------------------
Confidence 789999998743 4589999999999999987654211110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+|...|++++|+| ++++|+++ .|++|++||+++.... .
T Consensus 160 -------------------------------------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~ 201 (435)
T 4e54_B 160 -------------------------------------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-V 201 (435)
T ss_dssp -------------------------------------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-E
T ss_pred -------------------------------------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-E
Confidence 257899999999998 68899998 8999999999754321 1
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
+. ....+...+.+++|+|++ .+|++|+.||.|++||++.... ..+.+|...|.+++|
T Consensus 202 ~~-----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~-----------------~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 202 FA-----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKEL-----------------WNLRMHKKKVTHVAL 258 (435)
T ss_dssp EE-----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBC-----------------CCSBCCSSCEEEEEE
T ss_pred Ee-----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCccee-----------------EEEecccceEEeeee
Confidence 11 223345567899999998 8999999999999999865432 125677889999999
Q ss_pred ccCCC-EEEEEc-CCeEEEEEeeCCCCCeeeE---eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 351 ARNGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 351 s~~~~-~l~s~~-~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
+|++. ++++|+ |+.|++||+++ .+....+ .+|... |++++|+|+|++|++++.||.|++
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~i 322 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRV 322 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEE
T ss_pred cCCCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEE
Confidence 99876 566776 59999999986 4333222 234332 569999999999999999999999
Q ss_pred EecCCCCcceeeeccCCC------ceeeEEECCCCCeeEeec------------CCCeEEEecCCCCCccccCCcc-ccc
Q 010206 426 FGCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLGS------------LSGVVRRVKGADNSALDANGNA-FDF 486 (515)
Q Consensus 426 w~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~------------~d~~v~l~~~~~~~~~~~~~~~-~~~ 486 (515)
||+.++... ..+..|.. ......++|++..+++++ .++.|++++.... ...... ..|
T Consensus 323 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~ 398 (435)
T 4e54_B 323 YSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPE 398 (435)
T ss_dssp EESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSS
T ss_pred EECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCC
Confidence 999987443 34443322 122344555555544443 3356777432221 111121 246
Q ss_pred cCCeeEE-EEcCCCCEEEEEcCCcEEEEeC
Q 010206 487 SMKLLHL-AWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 487 ~~~i~~~-~~s~~~~~la~~~~~~~~i~~~ 515 (515)
...|.++ +|+|+|++||+|+++.+.||+.
T Consensus 399 ~~~v~s~~~fspdg~~lasg~d~~i~iW~~ 428 (435)
T 4e54_B 399 SSGISSLNEFNPMGDTLASAMGYHILIWSQ 428 (435)
T ss_dssp CCCCCCEEEECTTSSCEEEECSSEEEECCC
T ss_pred CCcEEEEEEECCCCCEEEEEcCCcEEEEEC
Confidence 7778887 6999999999999999999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=272.72 Aligned_cols=305 Identities=10% Similarity=0.099 Sum_probs=227.3
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....+.+|. ..|++++|+| .+|++++.||+|++|++.+++....
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~-------------------- 51 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENP-------------------- 51 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCG--------------------
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccC--------------------
Confidence 345677888 8999999954 4999999999999999987541000
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----C-
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G- 246 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~- 246 (515)
...... +.+|...|.+++|+|+ +
T Consensus 52 ---------------------------------------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 52 ---------------------------------------------------KDKSYS-HFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp ---------------------------------------------------GGGEEE-EECCTTCEEEEEEEEEEETTTE
T ss_pred ---------------------------------------------------CCcceE-EecCCCcEEEEEEecccccCCc
Confidence 000111 3578899999999999 9
Q ss_pred --CEEEEe-CCCcEEEEeCCCCCcccceecccCcccccc-----CCceEEEEEe----cCCCcE-EEEEecCCeEEEEec
Q 010206 247 --ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDM 313 (515)
Q Consensus 247 --~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~----p~~~~~-l~~~~~dg~i~~wd~ 313 (515)
++|+++ .|+.|++||+.+.+...... ...+..| ...|.+++|+ |++ .. |++++.||.|++||+
T Consensus 80 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 80 ELCLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEE
T ss_pred cccEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeC
Confidence 999998 89999999998766411100 0144556 5899999999 998 78 999999999999999
Q ss_pred Cc------cccccc-ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee---
Q 010206 314 RQ------SALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV--- 382 (515)
Q Consensus 314 ~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~--- 382 (515)
++ ++...- ....+... ......|...|.+++|+|++ ++++++. +.|++||+++ .+++..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~ 228 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHS 228 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC-
T ss_pred CccccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEecccc
Confidence 88 543220 00011110 00013366889999999999 9998876 9999999986 777777776
Q ss_pred e---ccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeecc-------------CCC
Q 010206 383 H---EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKN 443 (515)
Q Consensus 383 ~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~-------------~~~ 443 (515)
| ... +.+++|+|++++|++++.| |.|++||+.++ .....+.. |..
T Consensus 229 h~~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 229 MINNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp --CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSS
T ss_pred ccccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCC
Confidence 5 433 5699999999999999999 99999999987 45577887 999
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc------cc---------------cCCeeEEEEcCCC---
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE--- 499 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~s~~~--- 499 (515)
++.+++|+|++++|++++.|+.|++++-... +...... .| ...|.+++|+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 9999999999999999999999999332211 1111112 34 8899999999998
Q ss_pred -------CEEEEEcCC-cEEEEe
Q 010206 500 -------NSIACAASN-SLYMYY 514 (515)
Q Consensus 500 -------~~la~~~~~-~~~i~~ 514 (515)
++|++++.+ .+.+|+
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEE
T ss_pred cccccccceEEEecCCCcEEEEE
Confidence 789988755 488886
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=271.58 Aligned_cols=305 Identities=12% Similarity=0.111 Sum_probs=220.3
Q ss_pred ceeEEEEEeec--CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 113 ~~v~~l~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|. .....+++++.++.|++||+.+++........
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------------- 63 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------------- 63 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------------
Confidence 88999999763 12446777777889999999876533221110
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC----CCEEEEe-CCCcEEEEeCCCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~-~d~~i~iwd~~~~ 265 (515)
....|...|.+++|+|+ +++|+++ .|+.|++||+.+.
T Consensus 64 --------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 105 (366)
T 3k26_A 64 --------------------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM 105 (366)
T ss_dssp --------------------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC
T ss_pred --------------------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc
Confidence 01246788999999998 6689988 8999999999876
Q ss_pred CcccceecccCccccccCCceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+... .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.... +. .+.+|...
T Consensus 106 ~~~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----~~---------~~~~~~~~ 163 (366)
T 3k26_A 106 QCIK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAI----FG---------GVEGHRDE 163 (366)
T ss_dssp CEEE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEE----EC---------STTSCSSC
T ss_pred eEee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEE----ec---------ccccccCc
Confidence 5442 4567999999999999 66 8999999999999999988764321 11 02467789
Q ss_pred eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccc------------ccccc-cCCCccceeeEEEcCC
Q 010206 345 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK------------LCDLY-ENDSIFDKFECCLSGD 410 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~v~~~~~s~~ 410 (515)
|.+++|+|++++|++++. +.|++||+++ ++....+..+...... ..... ....-..|.+++|+
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 240 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-- 240 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--
Confidence 999999999999999875 9999999985 4333322210000000 00000 00011135689998
Q ss_pred CCEEEEecCCCcEEEEecCCCCc-------------ceeeeccCCCceeeEEECCC--CCeeEeecCCCeEEEecCCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGADNS 475 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~v~l~~~~~~~ 475 (515)
+++|++++.|+.|++||+.++.. ....+..|..++..++++|+ +++|++++.||.|++++-....
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 77999999999999999987643 24667789999999999999 9999999999999993322211
Q ss_pred ccc-cCCccccc--cCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 476 ALD-ANGNAFDF--SMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 476 ~~~-~~~~~~~~--~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
... .......| ...|.+++|+|++++|++++.++ +.+|+.
T Consensus 321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 000 11122234 68999999999999999888664 888873
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=273.01 Aligned_cols=298 Identities=11% Similarity=0.057 Sum_probs=204.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCC-------CeEEEEEccCCeeE------EEeeccCCcccCCCCCCccCCCCcCCCcee
Q 010206 113 EKINKIRWCQSANSALYLLSTND-------KTIKLWKVQEKKVK------KVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (515)
.+|++++|+| ++++|++|+.| +.|++|++...... .......... ... .+++
T Consensus 15 ~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~----~~~---------v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDN----DDS---------PTAI 79 (365)
T ss_dssp SCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTT----SCC---------CCEE
T ss_pred CCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCC----CCc---------eEEE
Confidence 5799999964 67789888653 36999998765321 1111111100 111 2345
Q ss_pred ecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee--eccCcCCeEEEEecCCCCEEEEe---CC
Q 010206 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA---DD 254 (515)
Q Consensus 180 ~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~---~d 254 (515)
++++..+.. ........+++++.++.+++|+ +...+..........+ ...+...+.+++|+|||++++++ .|
T Consensus 80 ~~~~~~~~~-g~~~~~~~l~s~~~d~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d 156 (365)
T 4h5i_A 80 DASKGIILV-GCNENSTKITQGKGNKHLRKFK--YDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP 156 (365)
T ss_dssp EEETTEEEE-ECCCCHHHHHHTSCCCCEEEEE--EETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS
T ss_pred EeCCCEEEE-EECCCccEEEEecCCCcEEEEE--ecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC
Confidence 555554311 1111223446778899999999 4433322111111111 13455678999999999998753 58
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
++|++||+++.+.... + .|...|.+++|+|++ +++++++.+ .+++|+..++.....
T Consensus 157 ~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~------------- 212 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR------------- 212 (365)
T ss_dssp CEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE-------------
T ss_pred CEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee-------------
Confidence 9999999997765432 2 367889999999999 899988855 566666666543211
Q ss_pred cccccccccceeEEEEccCCCEEEEEc-CC----eEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEE
Q 010206 335 RSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
....+|...|.+++|+|+++++++++ ++ .+++|++...... ...+..|... |++++
T Consensus 213 -~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------------V~~~~ 276 (365)
T 4h5i_A 213 -KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG---------------ITSMD 276 (365)
T ss_dssp -ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC---------------EEEEE
T ss_pred -eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC---------------eEeEE
Confidence 11345668899999999999999875 33 6888888752111 1223333322 66999
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|+|||++||+|+.|++|+|||+++++.+...+++|..+|++++|+|++++|+|||.|++||+
T Consensus 277 ~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 277 VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999999885444456899999999999999999999999999999
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=291.92 Aligned_cols=288 Identities=17% Similarity=0.228 Sum_probs=217.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 383 ~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------------ 419 (694)
T 3dm0_A 383 DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAY------------------------------------------ 419 (694)
T ss_dssp SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCS------------------------------------------
T ss_pred ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCccc------------------------------------------
Confidence 89999999653 34689999999999999987542100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
....+ .+.+|...|.+++|+|++++|++| .|++|++||+.++....
T Consensus 420 ------------------------------~~~~~-~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~-- 466 (694)
T 3dm0_A 420 ------------------------------GVAQR-RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR-- 466 (694)
T ss_dssp ------------------------------CEEEE-EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--
T ss_pred ------------------------------ccccc-eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--
Confidence 00011 146899999999999999999998 89999999998765432
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|+|++ ++|++|+.|+.|++||+...... .+. ....+|...|.+++|+
T Consensus 467 ------~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~-----~~~--------~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 467 ------RFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKY-----TIS--------EGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ------EEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEE-----EEC--------SSTTSCSSCEEEEEEC
T ss_pred ------EEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcce-----eec--------cCCCCCCCcEEEEEEe
Confidence 567899999999999998 89999999999999998654211 010 0124677899999999
Q ss_pred cCC--CEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 352 RNG--RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 352 ~~~--~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|++ ..|++++. +.|++||++. .+....+.+|... |++++|+|++++|++|+.||.|++||+
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLSN-CKLRSTLAGHTGY---------------VSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred CCCCcceEEEEeCCCeEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 986 57888765 9999999986 7778888888765 569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc-cccCCc---------------cccccCCeeE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGN---------------AFDFSMKLLH 492 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~-~~~~~~---------------~~~~~~~i~~ 492 (515)
.++. .+..+.. ...+.+++|+|++.++++++ |+.|++++-..... ..+... ...+...+++
T Consensus 591 ~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 591 AEGK-KLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTS 667 (694)
T ss_dssp TTTE-EEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEE
T ss_pred CCCc-eEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeee
Confidence 9874 3345543 46799999999998887775 55588832211100 000000 0011123789
Q ss_pred EEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 493 LAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 493 ~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
++|||||++|++++.|+ +.+|+.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCeEEEEec
Confidence 99999999999998666 788863
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=272.71 Aligned_cols=286 Identities=12% Similarity=0.220 Sum_probs=214.7
Q ss_pred ccccc--eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeeccc-CCCcccccccc
Q 010206 33 QEVDI--ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (515)
Q Consensus 33 ~h~~~--v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (515)
+|.+. +.+++|++ ..+++++.||.|++|++.+++.. ..+.. |.
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~--------- 134 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES--------- 134 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT---------
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC---------
Confidence 34443 45566665 55778889999999999877632 22222 55
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ +++.+|++++.||.|++||+.+++.......+ .+.+. .+.| ++..+
T Consensus 135 ---~~v~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~-------~~~~--~~~~l--- 189 (401)
T 4aez_A 135 ---TYVASVKWS--HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--------QARVG-------CLSW--NRHVL--- 189 (401)
T ss_dssp ---CCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SSCEE-------EEEE--ETTEE---
T ss_pred ---CCEEEEEEC--CCCCEEEEECCCCeEEEEECcCCeEEEEecCC--------CCceE-------EEEE--CCCEE---
Confidence 789999995 46779999999999999999988766655433 22232 4455 55666
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.++.|++|| +.... ..... +.+|...|.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 190 ---------~~~~~dg~i~i~d--~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 190 ---------SSGSRSGAIHHHD--VRIAN-----HQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK 252 (401)
T ss_dssp ---------EEEETTSEEEEEE--TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred ---------EEEcCCCCEEEEe--cccCc-----ceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence 9999999999999 33211 12222 46899999999999999999998 8999999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
. .+..|...|.+++|+|++..++++++ .|+.|++||+++++... .+. +...|.
T Consensus 253 ~--------~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~----~~~-------------~~~~v~ 307 (401)
T 4aez_A 253 F--------TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN----TVD-------------AGSQVT 307 (401)
T ss_dssp E--------EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE----EEE-------------CSSCEE
T ss_pred E--------EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE----EEe-------------CCCcEE
Confidence 3 45678999999999998867888876 79999999999876432 221 336799
Q ss_pred EEEEccCCCEEEE--Ec-CCeEEEEEeeCCCCCeee--EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCC
Q 010206 347 DIKFARNGRHILS--RD-YMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 421 (515)
Q Consensus 347 ~~~~s~~~~~l~s--~~-~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg 421 (515)
+++|+|+++++++ |. ++.|++||+.+ ++.... +.+|... |.+++|+|++++|++++.||
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEECTTSSEEEEECTTS
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEECCCCCEEEEEeCCC
Confidence 9999999999998 43 49999999986 444433 3445433 45899999999999999999
Q ss_pred cEEEEecCCCCcce
Q 010206 422 LFRVFGCSEGSAES 435 (515)
Q Consensus 422 ~i~iw~~~~~~~~~ 435 (515)
.|++|++.+++.+.
T Consensus 372 ~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 372 NLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECCC-----
T ss_pred cEEEEECCCCcccc
Confidence 99999999875443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.66 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=191.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++| ++++++|++++.|++|++||+.......
T Consensus 10 ~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------------------ 45 (297)
T 2pm7_B 10 EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------------------ 45 (297)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------------------
Confidence 88999999 5678899999999999999986432000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
... +.+|...|.+++|+++ +++|+++ .|++|++||+++++...
T Consensus 46 ---------------------------------~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 46 ---------------------------------IDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91 (297)
T ss_dssp ---------------------------------CEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC
T ss_pred ---------------------------------EEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE
Confidence 001 4689999999999864 8899998 89999999998654211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...+.+|...|.+
T Consensus 92 ~------~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--------------~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 92 I------AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--------------PIIIDAHAIGVNS 150 (297)
T ss_dssp C------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--------------CEEEECCSSCEEE
T ss_pred E------EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--------------eeeeecccCccce
Confidence 1 145678999999999997 6 799999999999999998753211 1124567789999
Q ss_pred EEEccC-------------CCEEEEEcC-CeEEEEEeeCCCC----CeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 348 IKFARN-------------GRHILSRDY-MTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 348 ~~~s~~-------------~~~l~s~~~-~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
++|+|+ +++|++|+. ++|++||++. .+ ....+.+|... |.+++|+|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp 214 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSP 214 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECC
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECC
Confidence 999997 578998865 9999999986 44 34566667654 56999999
Q ss_pred CC---CEEEEecCCCcEEEEecCCCCc--ceeee--ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 410 DG---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 410 ~~---~~l~s~s~dg~i~iw~~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++ ++|++++.|++|++||+++... ....+ ..|...+.+++|+|++++|++++.|+.|++
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 95 8999999999999999986431 11233 567889999999999999999999999999
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=266.01 Aligned_cols=288 Identities=10% Similarity=0.138 Sum_probs=222.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|+.|++||+.+++......
T Consensus 9 ~~i~~~~~s--~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------------------------------------- 47 (372)
T 1k8k_C 9 EPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 47 (372)
T ss_dssp SCCCEEEEC--TTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEEC--CCCCEEEEEeCCCEEEEEeCCCCcEEeeee---------------------------------------
Confidence 789999995 567799999999999999998765211111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 48 -------------------------------------~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 90 (372)
T 1k8k_C 48 -------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 90 (372)
T ss_dssp -------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred -------------------------------------ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE
Confidence 34688899999999999999998 8999999999766432211
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+..|...|.+++|+|++ ++|++++.|+.|++||++.+.... .. .....+|...|.+++|+
T Consensus 91 ------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~----~~--------~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 91 ------VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW----VC--------KHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp ------ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE----EE--------EEECTTCCSCEEEEEEC
T ss_pred ------EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcce----ee--------eeeecccCCCeeEEEEc
Confidence 345688999999999998 899999999999999998765210 00 01124567899999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeC-----------------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 352 RNGRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
|++++|++++. +.|++||+.. .++++..+..|... +.+++|+|++++
T Consensus 152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~ 216 (372)
T 1k8k_C 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSR 216 (372)
T ss_dssp TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSE
T ss_pred CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCE
Confidence 99999999875 9999999742 13445555444433 569999999999
Q ss_pred EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC--C-----------------
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--N----------------- 474 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~--~----------------- 474 (515)
|++++.||.|++||++++ .....+..|..++..++++|++++++++ .|+.+++++... .
T Consensus 217 l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR 294 (372)
T ss_dssp EEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred EEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence 999999999999999987 4557889999999999999999999888 899999833221 0
Q ss_pred ------------CccccC------Ccc-ccccCCeeEEEEc-CCC---CEEEEEcCCc-EEEEe
Q 010206 475 ------------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAASNS-LYMYY 514 (515)
Q Consensus 475 ------------~~~~~~------~~~-~~~~~~i~~~~~s-~~~---~~la~~~~~~-~~i~~ 514 (515)
...... ... .+|...|++++|+ ++| ++|++++.|+ +.+|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred hcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 000000 122 3789999999977 666 8999888665 88886
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=267.65 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=218.3
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..+....|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666889999999999999999999987655 334567787 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
++++|+ +++.+|++++.|++|++||+.+++....
T Consensus 143 ~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~-------------------------------------------- 176 (420)
T 3vl1_A 143 TKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRT-------------------------------------------- 176 (420)
T ss_dssp EEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEE--------------------------------------------
T ss_pred EEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceE--------------------------------------------
Confidence 999995 4677999999999999999987642111
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
+.+|...|.+++|+|++++|+++ .|+.|++||+++++....+.
T Consensus 177 ----------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-- 220 (420)
T 3vl1_A 177 ----------------------------------LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-- 220 (420)
T ss_dssp ----------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred ----------------------------------EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee--
Confidence 34788999999999999999998 89999999998776443221
Q ss_pred cCccccccCC---------------------ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 275 KPANMEDLTE---------------------VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 275 ~~~~~~~~~~---------------------~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
....+.. .+.+++|+|++ .+|++|+.||.|++||+++++....
T Consensus 221 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~------------ 284 (420)
T 3vl1_A 221 ---RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQ------------ 284 (420)
T ss_dssp ---BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEE------------
T ss_pred ---cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEE------------
Confidence 1112334 44445557888 8999999999999999988764321
Q ss_pred ccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 334 TRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
....|...|.+++|+|+++ +|++|+. |.|++||+++...++..+..|.... +..+ +.+++
T Consensus 285 ---~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~ 346 (420)
T 3vl1_A 285 ---LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAG 346 (420)
T ss_dssp ---ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETT
T ss_pred ---cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCC
Confidence 1234668899999999998 8888875 9999999997455677777754321 3355 45588
Q ss_pred CEEEEecCCCcEEEEecCCCCcc--------eeeeccCCCceeeEEECCCCC---eeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAE--------STTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~v~l 468 (515)
++|++++.||.|++|++...... ...+..|...+..++|+|+++ .+++.+.+|.+.+
T Consensus 347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 89999999999999999864221 234567889999999999999 6777777888877
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=263.93 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=193.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|++|++||+.+++.....
T Consensus 14 ~~V~~v~~s--~~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQMD--YYGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEEC--GGGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeEc--CCCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 889999995 56779999999999999999876421110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|++ ++++|+++ .|++|++||++++....
T Consensus 52 -----------------------------------~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 52 -----------------------------------D-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK 95 (316)
T ss_dssp -----------------------------------E-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE
T ss_pred -----------------------------------E-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE
Confidence 0 368999999999986 48899998 89999999998653211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
+ ..+.+|...|.+++|+|+ + .+|++|+.|+.|++||++.+... .. ...+.+|...+.+
T Consensus 96 -~-----~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~-------~~------~~~~~~h~~~v~~ 155 (316)
T 3bg1_A 96 -S-----HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW-------EV------KKINNAHTIGCNA 155 (316)
T ss_dssp -E-----EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE-------EE------CCBTTSSSSCBCC
T ss_pred -E-----EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc-------ce------eeeeccccCCcce
Confidence 1 145679999999999998 5 79999999999999999865311 00 1124567788999
Q ss_pred EEEccC-----------------CCEEEEEcC-CeEEEEEeeCCC--CCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 348 IKFARN-----------------GRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 348 ~~~s~~-----------------~~~l~s~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
++|+|+ +++|++|+. +.|++||+.... +++..+.+|... |.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~ 220 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAW 220 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEEC
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEe
Confidence 999997 468888765 999999997422 245566666654 569999
Q ss_pred cCCC----CEEEEecCCCcEEEEecCCC---CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 408 SGDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 408 s~~~----~~l~s~s~dg~i~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|++ ++|++++.|++|++|++.+. ......+..|...+.+++|+|++++|++++.|++|++
T Consensus 221 sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 221 APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred cCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 9987 89999999999999999863 1223456788999999999999999999999999999
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=252.38 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=223.4
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
.++....+.+|. ..|++++| |. +.+|++++.||.|++||+.+++....
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~~--~~~l~s~~~dg~v~vw~~~~~~~~~~----------------- 54 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-VD--DSKVASVSRDGTVRLWSKDDQWLGTV----------------- 54 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-EE--TTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-cC--CCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence 445667889998 89999999 54 56899999999999999977643221
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
...|...|.+++|+|++++
T Consensus 55 -------------------------------------------------------------~~~~~~~v~~~~~~~~~~~ 73 (313)
T 3odt_A 55 -------------------------------------------------------------VYTGQGFLNSVCYDSEKEL 73 (313)
T ss_dssp -------------------------------------------------------------EEECSSCEEEEEEETTTTE
T ss_pred -------------------------------------------------------------eecCCccEEEEEECCCCCE
Confidence 2456788999999999999
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+++ .|+.|++|++........+ ..+.+|...|.+++|+ + .++++++.|+.|++||. +... .
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~~~~----~--- 136 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--GSLV----Y--- 136 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--TEEE----E---
T ss_pred EEEecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--CcEE----E---
Confidence 9998 8999999999765432211 2567799999999994 4 68999999999999992 2211 1
Q ss_pred eccCCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceee
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
.+..|...+.++.|+| ++.++++++. +.|++||. .+....+.. +... +.+
T Consensus 137 ---------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~ 189 (313)
T 3odt_A 137 ---------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRH 189 (313)
T ss_dssp ---------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEE
T ss_pred ---------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEE
Confidence 1455668899999998 8999999875 99999993 445555554 3332 568
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 484 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~ 484 (515)
++|+|++. +++++.||.|++||++++ .....+..|..++.+++++|++ .+++++.||.|++++-.. .+......
T Consensus 190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~---~~~~~~~~ 263 (313)
T 3odt_A 190 LAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN---GSLKQVIT 263 (313)
T ss_dssp EEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT---CCEEEEEE
T ss_pred EEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC---CceeEEEe
Confidence 99999998 899999999999999987 4557889999999999999999 689999999999933221 12222333
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 485 DFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 485 ~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
.|...|.+++|+|++++++.+.++.+.+|+.
T Consensus 264 ~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 264 LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQ 294 (313)
T ss_dssp CSSSCEEEEEECTTSCEEEEETTSCEEEEES
T ss_pred ccCceEEEEEEccCCCEEEEeCCCcEEEEeC
Confidence 5678999999999999777777778999973
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=260.88 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=205.5
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++++|+|++++||+|+.||.|+||++.++.. ..+....+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 458999999999999999999999999999999986542 223455677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|..++.+|++++.|++|++||+.+++.... ++
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~~------ 98 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------GR------ 98 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------SC------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------cc------
Confidence 889999997654577999999999999999987642000 00
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
. ...... +..|...|.+++|+|+ +++|+++ .|+.|++||+++.+.
T Consensus 99 ---------------~----------------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 99 ---------------R----------------WNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp ---------------S----------------EEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ---------------C----------------cceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 0 001111 3578899999999999 9999998 899999999987764
Q ss_pred ccceec-----ccCccccccCCceEEEEEecC---CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 268 SFNIVD-----VKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 268 ~~~~~~-----~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
...+.. ........|...+.+++|+|+ + ..+++++.++.+.+|+...+.... ...+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 211 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV--------------AAKLP 211 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE--------------EEECC
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee--------------eeecC
Confidence 432110 000112357889999999997 6 899999999999888876654310 11245
Q ss_pred ccccceeEEEEccCC----CEEEEEcC-CeEEEEEeeCCC----------------------------------------
Q 010206 340 EIIASISDIKFARNG----RHILSRDY-MTLKLWDINMDS---------------------------------------- 374 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~----~~l~s~~~-~~i~iwd~~~~~---------------------------------------- 374 (515)
+|...|.+++|+|++ ++|++++. +.|++||++...
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 677899999999998 78998765 999999998521
Q ss_pred -----CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 375 -----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 375 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
+++..+.+|. ..|++++|+|++++|++++.||.|++|++.+++.
T Consensus 292 ~~~~~~~~~~~~~h~---------------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 292 SNLQVELLSEHDDHN---------------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp CSEEEEEEEEECTTS---------------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccEEEEEeccc---------------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1112222222 2367999999999999999999999999998743
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=272.69 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=183.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++++.|+.|++||+.++......
T Consensus 12 ~~v~~~~~s--~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---------------------------------------- 49 (377)
T 3dwl_C 12 KPSYEHAFN--SQRTEFVTTTATNQVELYEQDGNGWKHAR---------------------------------------- 49 (377)
T ss_dssp SCCSCCEEC--SSSSEEECCCSSSCBCEEEEETTEEEECC----------------------------------------
T ss_pred CcEEEEEEC--CCCCEEEEecCCCEEEEEEccCCceEEEE----------------------------------------
Confidence 679999995 46779999999999999998876311110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. +.+|...|.+++|+|++++|+++ .|+.|++||+.+.+.....
T Consensus 50 -----------------------------------~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 50 -----------------------------------T-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp -----------------------------------C-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred -----------------------------------E-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 0 35788999999999999999998 8999999999876511111
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKF 350 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~ 350 (515)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.... .. .+.+ |...|.+++|
T Consensus 94 -----~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-~~------------~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 94 -----LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWV-SK------------HLKRPLRSTILSLDW 154 (377)
T ss_dssp -----EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCC-CE------------EECSSCCSCEEEEEE
T ss_pred -----eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccccee-ee------------EeecccCCCeEEEEE
Confidence 1456799999999999998 8999999999999999988652100 11 1333 7789999999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCC-----------------CCeeeEeeeccccccccccccCCCccceeeEEEcCCCC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDS-----------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 412 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 412 (515)
+|++++|++++. +.|++||+.... +++..+ .|.. .|.+++|+|+++
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~ 218 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGN 218 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSS
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCC
Confidence 999999999875 999999996311 111222 2222 266999999999
Q ss_pred EEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 413 RVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 413 ~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+|++++.||.|++||+.++... ...+..|..++.+++|+|++++|++++.++.+.+
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 9999999999999999988541 5788999999999999999999999998888866
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=293.02 Aligned_cols=259 Identities=14% Similarity=0.216 Sum_probs=203.6
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|+|++|++|+.||.|+||++.++.. .....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc----------
Confidence 458999999999999999999999999999999874322 2456678888
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+|..++.+|++++.||+|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999766557899999999999999998765222111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
..+|...|.+++|+|+ ++.|+++ .||.|++||+++...
T Consensus 95 ---------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~ 135 (753)
T 3jro_A 95 ---------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 135 (753)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred ---------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence 3468889999999999 9999998 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEecC-------------CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
... ..+.+|...|.+++|+|. + ..|++|+.||.|++||++++.......
T Consensus 136 ~~~------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----------- 197 (753)
T 3jro_A 136 TSP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE----------- 197 (753)
T ss_dssp CCC------EEEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEE-----------
T ss_pred cce------eEeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceee-----------
Confidence 322 145678999999999994 6 899999999999999998764221111
Q ss_pred cccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeeccccccccccccCCCccceeeEE
Q 010206 335 RSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
..+.+|..+|.+++|+|+ +++|++++. |.|++||+...... ......|.. .|++++
T Consensus 198 -~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------------~v~~l~ 261 (753)
T 3jro_A 198 -STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRAS 261 (753)
T ss_dssp -EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSS---------------CCCCEE
T ss_pred -eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCC---------------ceEEEE
Confidence 124667789999999999 899999875 99999999863211 111111221 255899
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|+|+|++|++|+.||.|++|++..+.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999998653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-33 Score=265.75 Aligned_cols=269 Identities=13% Similarity=0.261 Sum_probs=220.4
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
+|...|.|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56778999887 78999999999999999987765 335677887
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ++.+|++|+.||+|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 88999998 356999999999999999987753221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++|++ ..|+++ .|+.|++||+++.......
T Consensus 209 -------------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~ 249 (435)
T 1p22_A 209 -------------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR 249 (435)
T ss_dssp -------------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred -------------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee
Confidence 246778899999974 488887 8999999999876543211
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+.+|...|.+++| ++ .++++|+.||.|++||+++++... . +.+|...|.++.++
T Consensus 250 -----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~~----~------------~~~~~~~v~~~~~~ 305 (435)
T 1p22_A 250 -----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFVR----T------------LNGHKRGIACLQYR 305 (435)
T ss_dssp -----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEEE----E------------EECCSSCEEEEEEE
T ss_pred -----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEEE----E------------EcCCCCcEEEEEeC
Confidence 145679999999999 45 799999999999999999876432 1 45567889999985
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
++++++|+. +.|++||+++ ++++..+.+|... |.+++| ++++|++|+.||.|++||+.+
T Consensus 306 --~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 306 --DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 678888765 9999999997 8888888877755 447777 789999999999999999976
Q ss_pred CCc--------ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 431 GSA--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 431 ~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.. ....+.+|..+|.++++ ++.+|++++.||.|++
T Consensus 366 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 366 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 531 45778899999999999 7889999999999999
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=266.72 Aligned_cols=323 Identities=12% Similarity=0.159 Sum_probs=240.6
Q ss_pred eecccCCCcccccccccccce-eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
..+.+|. .. +.++.+ + +.++++++.||+|++||+.+++.......+ .+.|.
T Consensus 115 ~~l~~h~------------~~v~~~~~~--~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--------~~~V~---- 166 (464)
T 3v7d_B 115 TTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW---- 166 (464)
T ss_dssp EEEECCS------------SSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE----
T ss_pred EEEcCCC------------CCcEEEEEE--C--CCEEEEEcCCCcEEEEECCCCcEEEEEeCC--------CcCEE----
Confidence 4567776 44 566666 3 459999999999999999999876665533 34444
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec--CCCCEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFI 250 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~ 250 (515)
.++|+|++ .+ ++++.|+.|++|| +.. ..+... +.+|...|.+++|+ +++++|+
T Consensus 167 ---~l~~~~~~-~l------------~s~s~dg~i~vwd--~~~------~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 167 ---ALKYAHGG-IL------------VSGSTDRTVRVWD--IKK------GCCTHV-FEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp ---EEEECSTT-EE------------EEEETTSCEEEEE--TTT------TEEEEE-ECCCSSCEEEEEEEESSSCEEEE
T ss_pred ---EEEEcCCC-EE------------EEEeCCCCEEEEE--CCC------CcEEEE-ECCCCCccEEEEEecCCCCCEEE
Confidence 78888888 66 9999999999999 433 223333 46899999999998 5778899
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecc---------------cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDV---------------KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
++ .|+.|++||+++.......... ....+.+|...+.++ ++++ .++++|+.|+.|++||++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECC
Confidence 98 8999999999876533211000 001456788888877 5666 799999999999999998
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
+++... .+.+|...|.+++|+|+++++++|+. +.|++||+.+ ++++..+.+|...
T Consensus 299 ~~~~~~----------------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~------- 354 (464)
T 3v7d_B 299 QMKCLY----------------ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL------- 354 (464)
T ss_dssp TTEEEE----------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC-------
T ss_pred CCcEEE----------------EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc-------
Confidence 876432 14567789999999999999999875 9999999986 8888888887755
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 473 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~ 473 (515)
|.+++|+ +++|++++.||.|++||+.++... .. ..+...+..++++|+++++++++ |+.|++++-..
T Consensus 355 --------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 --------VGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FS-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --------EEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EE-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred --------EEEEEEc--CCEEEEEeCCCcEEEEECCCCcee-ee-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 4578886 589999999999999999976433 22 24667788889999999999998 89999933221
Q ss_pred CCccccCC-ccccccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 474 NSALDANG-NAFDFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 474 ~~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
. +... ....+...|.+++|+ ...+++++++++..+|
T Consensus 422 g---~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 422 G---KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp C---CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred C---cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 1 1221 234578899999997 3344445556665544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=259.96 Aligned_cols=246 Identities=13% Similarity=0.119 Sum_probs=185.2
Q ss_pred cCcCCeEEEEecCC---CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE------ecCCCcEEEE
Q 010206 232 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY 301 (515)
Q Consensus 232 ~~~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~------~p~~~~~l~~ 301 (515)
+|...|.+++|+|+ +++|+++ .|+.|++||+.+.+.... .+.+|...|.+++| +|++ .+|++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~ 134 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT 134 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence 57789999999998 6899998 899999999987762322 56789999999965 6787 89999
Q ss_pred EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE----EccCCCEEEEEcC-CeEEEEEeeCCCCC
Q 010206 302 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP 376 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~~~~~l~s~~~-~~i~iwd~~~~~~~ 376 (515)
++.|+.|++||++++... ...+..+. ..+...+.+++ |+|++++|++++. +.|++||+++ .+.
T Consensus 135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 202 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP---VANMEPVQ--------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL 202 (357)
T ss_dssp EETTSCEEEECTTSCSSC---SEEECCCT--------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred EeCCCeEEEEeCCCCCCc---ceeccccC--------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence 999999999999887522 12222211 11124788888 7889999999876 9999999985 443
Q ss_pred eeeEeeeccccccccccccCCCccceeeEEEcC---CCCEEEEecCCCcEEEEecCCCCcceeee-----ccCCCceeeE
Q 010206 377 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQ 448 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~s~dg~i~iw~~~~~~~~~~~~-----~~~~~~v~~~ 448 (515)
. ....|... +.+++|+| ++++|++++.||.|++||++++... ..+ .+|..++..+
T Consensus 203 ~-~~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 203 R-WETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp E-EEEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEE
T ss_pred e-eecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEE
Confidence 2 23334332 56999999 9999999999999999999876333 333 4899999999
Q ss_pred EECCCCC-eeEeecCCCeEEEecCCCCCcc----------------ccCCccccccCCeeEEEEcCCCCEEE-EEcC-Cc
Q 010206 449 VQTPSRP-SRPLGSLSGVVRRVKGADNSAL----------------DANGNAFDFSMKLLHLAWHPSENSIA-CAAS-NS 509 (515)
Q Consensus 449 ~~~~~~~-~l~s~~~d~~v~l~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~-~~ 509 (515)
+++|+++ ++++++.||.|++++-...... ........|...|.+++|+|++++|+ +++. ..
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~ 345 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc
Confidence 9999998 8999999999999332211100 11122335788999999999999998 5764 55
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|+
T Consensus 346 i~iw~ 350 (357)
T 3i2n_A 346 VRVLI 350 (357)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88886
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=276.93 Aligned_cols=293 Identities=10% Similarity=0.088 Sum_probs=205.0
Q ss_pred cccccceEEEEECCC------CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 32 VQEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~------g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++....... + . .......+.+|.
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~---------~-~~~p~~~l~~h~----- 266 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--K---------M-CEKPSLTLSLAD----- 266 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--E---------C-CCSCSEEECCTT-----
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--e---------e-ecCceEEEEcCC-----
Confidence 357789999999997 5799999999999999997654210000 0 0 000123466777
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..|++++|++ + ..|++|+.||+|++||++++...
T Consensus 267 -------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~------------------------------------ 300 (524)
T 2j04_B 267 -------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVP------------------------------------ 300 (524)
T ss_dssp -------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSC------------------------------------
T ss_pred -------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCc------------------------------------
Confidence 8899999964 3 48999999999999999864200
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEE--EecCCC-CEEEEe-CCCcEEEEe
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWN 261 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~s~-~d~~i~iwd 261 (515)
...+.+|...|.++ +|+|++ ++|+++ .|++|++||
T Consensus 301 -----------------------------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 301 -----------------------------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp -----------------------------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred -----------------------------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 00035788999999 578887 899998 899999999
Q ss_pred CCCCCcccceecccCccccccC--CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
+++.+... .+.+|. ..|.+++|+|++ ..+++++.|+.|++||++++.... .+.
T Consensus 340 ~~~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~----------------~l~ 394 (524)
T 2j04_B 340 PKDIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVH----------------PLV 394 (524)
T ss_dssp GGGHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCE----------------EEE
T ss_pred CCCCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccce----------------eee
Confidence 98665432 233443 357899999998 789999999999999998865421 245
Q ss_pred ccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 340 EIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
+|.+.|++++|+|+|++|++|+. ++|++||+.. +.+.......... ....+++++|+|+++.+. ..
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~ 461 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-ID 461 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-EC
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-cc
Confidence 68899999999999999999875 9999999863 3333221111000 001245889999999553 22
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC---eeEeecCCCeEEE
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 468 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~~~d~~v~l 468 (515)
.+ +.+|+....+....++.+|..+|.+++|+|+++ ++|+|+.||.|+|
T Consensus 462 ~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 462 SS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp CC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred CC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 22 334443322245578899999999999999965 9999999999999
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=258.06 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=220.6
Q ss_pred ccccccceEEEEECCC---CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~---g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..+|.+.|++++|+|+ |++|++|+.||.|+||++.+.... ....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------------IPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------------EEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------------eEEEecccc-------
Confidence 4589999999999999 699999999999999999863221 334567787
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|++++|+ +++.+|++++.|+.|++||+.+++...
T Consensus 87 -----~~v~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~~~~~------------------------------------- 122 (368)
T 3mmy_A 87 -----GPVLDVCWS--DDGSKVFTASCDKTAKMWDLSSNQAIQ------------------------------------- 122 (368)
T ss_dssp -----SCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEE-------------------------------------
T ss_pred -----CCEEEEEEC--cCCCEEEEEcCCCcEEEEEcCCCCcee-------------------------------------
Confidence 889999995 467799999999999999998765322
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEe--cCCCCEEEEe-CCCcEEEEeCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~ 264 (515)
...|...|.+++| ++++++|+++ .|+.|++||+++
T Consensus 123 ------------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 123 ------------------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ------------------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred ------------------------------------------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 1357788999999 8999999998 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.+... .+.. ...+.++.+.+ ..+++++.++.+++|+++....... .. ...+...
T Consensus 161 ~~~~~--------~~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~-----------~~~~~~~ 214 (368)
T 3mmy_A 161 SNPMM--------VLQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RI-----------ESPLKHQ 214 (368)
T ss_dssp SSCSE--------EEEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---EC-----------CCSCSSC
T ss_pred CcEEE--------EEec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hc-----------cccccCC
Confidence 76443 2232 34567777765 4688899999999999987543211 00 0112234
Q ss_pred eeEEEEccCCCE----EEEEcC-CeEEEEEeeCCC--CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 345 ISDIKFARNGRH----ILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 345 i~~~~~s~~~~~----l~s~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
+.++.+.++... +++++. +.|++||+.... ..+..+..|......... ......|++++|+|++++|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~ 291 (368)
T 3mmy_A 215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA---PQDIYAVNGIAFHPVHGTLATV 291 (368)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC---CEEECCEEEEEECTTTCCEEEE
T ss_pred CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc---cccccceEEEEEecCCCEEEEE
Confidence 566666655543 777765 999999998621 445666666532110000 0011136699999999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.||.|++||+.++ .....+..|..++..++|+|++++|++++.|+..+.
T Consensus 292 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 292 GSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 99999999999987 556888999999999999999999999999886555
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=251.04 Aligned_cols=271 Identities=12% Similarity=0.070 Sum_probs=210.8
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+| ++.+|++++.|+.|++|++.+++.....
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~~---------------------------------------- 49 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDL---------------------------------------- 49 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEE----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCccccc----------------------------------------
Confidence 8899999965 5679999999999999998865411100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeC-CCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~-~~~~~~~ 269 (515)
.. ..+|...|.+++|+|+++ +|+++ .|+.|++||+ .+....
T Consensus 50 ----------------------------------~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~- 93 (342)
T 1yfq_A 50 ----------------------------------LQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ- 93 (342)
T ss_dssp ----------------------------------EE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-
T ss_pred ----------------------------------ee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-
Confidence 00 236778999999999999 99998 8999999999 765431
Q ss_pred ceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCc---------ccccccccceeeeccCCCccccc
Q 010206 270 NIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFF 338 (515)
Q Consensus 270 ~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 338 (515)
.+.+ |...|.+++|+| + ..|++++.|+.|++||+++ ++.... +
T Consensus 94 --------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------------~ 147 (342)
T 1yfq_A 94 --------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------------T 147 (342)
T ss_dssp --------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----------------S
T ss_pred --------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeE----------------E
Confidence 5566 999999999999 7 8999999999999999986 432211 2
Q ss_pred cccccceeEEEEccCCCEEEEEc-CCeEEEEEeeC-CCCCeeeEe-eeccccccccccccCCCccceeeEEEcC-CCCEE
Q 010206 339 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINM-DSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRV 414 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 414 (515)
. |...|.+++|+|++ +++++ ++.|++||++. ......... .+.. .+.+++|+| ++++|
T Consensus 148 ~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------QIRDVALLPKEQEGY 209 (342)
T ss_dssp S-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------CEEEEEECSGGGCEE
T ss_pred e-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------ceeEEEECCCCCCEE
Confidence 2 55789999999987 66655 59999999985 333222222 2222 256999999 99999
Q ss_pred EEecCCCcEEEEecCCC-----CcceeeeccCCC---------ceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 415 ATGSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
++++.||.|++|++... ......+..|.. ++.+++++|++++|++++.||.|++++-.. .+..
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~ 286 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKI 286 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEE
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---HhHh
Confidence 99999999999999876 355577888765 999999999999999999999999943221 1222
Q ss_pred Cccccc-cCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 481 GNAFDF-SMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 481 ~~~~~~-~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.....| ...|.+++ |++++|++++.|+.
T Consensus 287 ~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 287 KNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 234456 88999999 99999999987764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=258.23 Aligned_cols=307 Identities=13% Similarity=0.190 Sum_probs=215.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+|. ++.+|++++.||.|++||+.+++.........
T Consensus 44 ~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------------------------------------ 86 (408)
T 4a11_B 44 GGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA------------------------------------ 86 (408)
T ss_dssp SCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCSSSSCEEECE------------------------------------
T ss_pred CcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCcccceEeccc------------------------------------
Confidence 88999999541 57799999999999999998765322211100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.. ........+|...|.+++|+| ++.+|+++ .|+.|++||+.+.+...
T Consensus 87 ---------------------~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 136 (408)
T 4a11_B 87 ---------------------VC--------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD- 136 (408)
T ss_dssp ---------------------EE--------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE-
T ss_pred ---------------------cc--------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce-
Confidence 00 000000246889999999999 77788888 89999999998765442
Q ss_pred eecccCccccccCCceEEEEEecCCC--cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
...+...+.++.++|.+. .++++++.|+.|++||+++++... .+.+|...|.++
T Consensus 137 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------------~~~~~~~~v~~~ 192 (408)
T 4a11_B 137 --------VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----------------ILQGHRQEILAV 192 (408)
T ss_dssp --------EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----------------EECCCCSCEEEE
T ss_pred --------eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----------------eecCCCCcEEEE
Confidence 123678899999998541 499999999999999998875421 245677899999
Q ss_pred EEccCCCE-EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 349 KFARNGRH-ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 349 ~~s~~~~~-l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
+|+|++++ +++++. +.|++||++....++..+..+...............-..|.+++|+|++++|++++.||.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 99999984 777765 9999999987554555554333221111111111222346799999999999999999999999
Q ss_pred ecCCCCcceeeecc-----CCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 427 GCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 427 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
|+.++.... .+.. ................++.++.|+.+++++.... +......+|...|.+++|+|++++
T Consensus 273 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~ 348 (408)
T 4a11_B 273 NSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQE 348 (408)
T ss_dssp ETTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTE
T ss_pred ECCCCccce-eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCE
Confidence 999875432 2221 1222333333445667778888999999432221 222233458899999999999999
Q ss_pred EEEEcCCc-EEEEe
Q 010206 502 IACAASNS-LYMYY 514 (515)
Q Consensus 502 la~~~~~~-~~i~~ 514 (515)
|++++.++ +.+|+
T Consensus 349 l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 349 LYSGSRDCNILAWV 362 (408)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEECCCCeEEEEe
Confidence 99888665 88886
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=257.71 Aligned_cols=288 Identities=15% Similarity=0.188 Sum_probs=214.9
Q ss_pred ceEEEEECCCCCeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 37 IISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 37 ~v~~v~~s~~g~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
....++++|+...+ ++|+.||.|+||++...... ......+.+|. ..|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 34568899887544 45788999999998654221 01223467787 889
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
++++|+|. ++.+|++++.|++|++||+.++.......
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~~------------------------------------------ 121 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPLR------------------------------------------ 121 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCBC------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCccccC------------------------------------------
Confidence 99999642 56799999999999999998764211000
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
.+... +.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...
T Consensus 122 ----------------------------~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---- 168 (402)
T 2aq5_A 122 ----------------------------EPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL---- 168 (402)
T ss_dssp ----------------------------SCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE----
T ss_pred ----------------------------CceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE----
Confidence 00111 36889999999999998 688888 89999999999765443
Q ss_pred ccCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc-eeEEEE
Q 010206 274 VKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKF 350 (515)
Q Consensus 274 ~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~ 350 (515)
.+ ..|...|.+++|+|++ .+|++++.|+.|++||+++++... .+. .+|.+. +.++.|
T Consensus 169 ----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~----~~~-----------~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 169 ----TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVA----EKD-----------RPHEGTRPVHAVF 228 (402)
T ss_dssp ----EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEE----EEE-----------CSSCSSSCCEEEE
T ss_pred ----EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceee----eec-----------cCCCCCcceEEEE
Confidence 34 5689999999999998 899999999999999999876432 110 234444 899999
Q ss_pred ccCCCEEEEE---c-CCeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEEEcCCCCEEE-EecCCCcEE
Q 010206 351 ARNGRHILSR---D-YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFR 424 (515)
Q Consensus 351 s~~~~~l~s~---~-~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~ 424 (515)
+|++++|++| + ++.|++||++....++..... +... +..++|+|++++|+ +|+.||.|+
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEE
Confidence 9999999998 4 499999999864433444332 2211 45899999999986 566899999
Q ss_pred EEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 425 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 425 iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+||+.+++.....+.. |..++..++|+|++.+++++ ++.+++
T Consensus 294 i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~ 337 (402)
T 2aq5_A 294 YFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF 337 (402)
T ss_dssp EEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred EEEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence 9999987543444544 45899999999999998764 557777
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=253.81 Aligned_cols=279 Identities=13% Similarity=0.060 Sum_probs=202.4
Q ss_pred EEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEE
Q 010206 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (515)
Q Consensus 41 v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~ 120 (515)
..+.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~ 84 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGE 84 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeee
Confidence 345568899999999999999999877643 1111 1 45777778
Q ss_pred eecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCC
Q 010206 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (515)
Q Consensus 121 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 200 (515)
+|. +++++.|++|++|+.....
T Consensus 85 ~~~-----~~s~s~D~~i~~w~~~~~~----------------------------------------------------- 106 (343)
T 3lrv_A 85 HPA-----IISRGPCNRLLLLYPGNQI----------------------------------------------------- 106 (343)
T ss_dssp CCS-----EEEECSTTEEEEEETTTEE-----------------------------------------------------
T ss_pred CCc-----eEEecCCCeEEEEEccCce-----------------------------------------------------
Confidence 543 9999999999999987521
Q ss_pred CCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCcccceecccCc
Q 010206 201 PGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 277 (515)
Q Consensus 201 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (515)
.+|+ +.. ....+....+|...|.+++|+| ++++|+++ .|++|++||+++++... +
T Consensus 107 -------~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~------ 164 (343)
T 3lrv_A 107 -------TILD--SKT------NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI-V------ 164 (343)
T ss_dssp -------EEEE--TTT------CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE-E------
T ss_pred -------EEee--cCC------cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE-E------
Confidence 1111 000 1111222346778999999999 99999998 89999999999776531 1
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEEccCCCE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRH 356 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~ 356 (515)
....+...+.+++|+|++ .+|++|+.||.|++||+++++... . .+.. |..+|.+++|+|++.+
T Consensus 165 ~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~~---~------------~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQAS---S------------RFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp ECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSCC---E------------ECCCCTTSCEEEEEECTTSSE
T ss_pred EecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCCc---c------------EEeccCCCCEEEEEEeCCCCE
Confidence 112356679999999998 899999999999999999876431 1 1344 7789999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcEEEEecCCCCcce
Q 010206 357 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAES 435 (515)
Q Consensus 357 l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i~iw~~~~~~~~~ 435 (515)
|++++++.|++||+++ .+.+..+......... +. ..+++|+|+|++|++++. |+.+++|++.......
T Consensus 229 l~s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 229 MVVECDQTVVCFDLRK-DVGTLAYPTYTIPEFK---------TG-TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp EEEEESSBEEEEETTS-STTCBSSCCCBC--------------C-CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred EEEEeCCeEEEEEcCC-CCcceeeccccccccc---------cc-ceEEEECCCCCEEEEecCCCCcEEEEEEcccccce
Confidence 9998888999999986 5555444332111000 00 025999999999999988 9999999997653322
Q ss_pred eeeccCCCceeeEEECC---CCCeeEeecCCCeEEE
Q 010206 436 TTLEASKNPMRRQVQTP---SRPSRPLGSLSGVVRR 468 (515)
Q Consensus 436 ~~~~~~~~~v~~~~~~~---~~~~l~s~~~d~~v~l 468 (515)
.. .++..+.+.+ +.+.+++++.|+.+++
T Consensus 298 -~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 298 -TK----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp -EE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred -Ee----cCceeEecCccccccceeEEEecCCceEE
Confidence 11 5677888888 8889999999999888
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=254.12 Aligned_cols=247 Identities=19% Similarity=0.316 Sum_probs=202.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~----------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence 3688899999999999999999999999999998766 345677887
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|.++.|. +..|++++.|+.+++||........
T Consensus 190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~----------------------------------------- 223 (420)
T 4gga_A 190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV----------------------------------------- 223 (420)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------------------------
T ss_pred -CceEEEeeC----CCEEEEEeCCCceeEeeecccceee-----------------------------------------
Confidence 779998883 4589999999999999987543110
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
..+.+|...+..+.++|++++++++ .|+.+++|+..+.+....
T Consensus 224 ------------------------------------~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~ 267 (420)
T 4gga_A 224 ------------------------------------ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267 (420)
T ss_dssp ------------------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred ------------------------------------EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce
Confidence 0035788999999999999999998 899999999987654322
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.. .....|...|.+++|+|++..+++++ +.|+.|++||++++..... +. +...+.++
T Consensus 268 ~~----~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~----~~-------------~~~~v~~~ 326 (420)
T 4gga_A 268 PL----QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA----VD-------------AHSQVCSI 326 (420)
T ss_dssp CS----EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE----EE-------------CSSCEEEE
T ss_pred ee----eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee----ec-------------cccceeee
Confidence 11 24567889999999999886777764 4799999999998865321 11 12568999
Q ss_pred EEccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 349 KFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 349 ~~s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
.|+|+++.+++++ ++.|+|||+.+ ++++.++.+|... |++++|+|||++|+||+.|++|+|
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEE
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEE
Confidence 9999999988753 49999999996 8899999998765 669999999999999999999999
Q ss_pred EecCCC
Q 010206 426 FGCSEG 431 (515)
Q Consensus 426 w~~~~~ 431 (515)
||+...
T Consensus 391 Wdv~~~ 396 (420)
T 4gga_A 391 WRCFEL 396 (420)
T ss_dssp ECCSCS
T ss_pred EECCCC
Confidence 999765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=254.68 Aligned_cols=273 Identities=12% Similarity=0.142 Sum_probs=217.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+.++.| ++ ..+++++.|+.|++||+.+++......... .+.+. .++|+|+++.+
T Consensus 95 ~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------~~~v~-------~v~~s~~~~~l------- 149 (401)
T 4aez_A 95 YLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAETDE-------STYVA-------SVKWSHDGSFL------- 149 (401)
T ss_dssp TCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEECCT-------TCCEE-------EEEECTTSSEE-------
T ss_pred eEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeecCC-------CCCEE-------EEEECCCCCEE-------
Confidence 3566777 33 368889999999999999998776655421 23344 88999999998
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
++++.+|.|++|| +... +.... +.+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 150 -----~~~~~dg~i~iwd--~~~~------~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 211 (401)
T 4aez_A 150 -----SVGLGNGLVDIYD--VESQ------TKLRT-MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG-- 211 (401)
T ss_dssp -----EEEETTSCEEEEE--TTTC------CEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE--
T ss_pred -----EEECCCCeEEEEE--CcCC------eEEEE-ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee--
Confidence 9999999999999 3332 22333 4689999999999 45788888 899999999985544332
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||+++++... .+..|...|.+++|+|
T Consensus 212 -----~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~----------------~~~~~~~~v~~~~~~p 269 (401)
T 4aez_A 212 -----TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKF----------------TKTNHNAAVKAVAWCP 269 (401)
T ss_dssp -----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEE----------------EECCCSSCCCEEEECT
T ss_pred -----EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccE----------------EecCCcceEEEEEECC
Confidence 557799999999999998 899999999999999998865421 1445678999999999
Q ss_pred CCC-EEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE--ecCCCcEEEE
Q 010206 353 NGR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRVF 426 (515)
Q Consensus 353 ~~~-~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg~i~iw 426 (515)
++. ++++++ ++.|++||+.+ ++++..+..+. . +.+++|+|++++|++ |+.||.|++|
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~-~---------------v~~~~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGS-Q---------------VTSLIWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTT-CCEEEEEECSS-C---------------EEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred CCCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCC-c---------------EEEEEECCCCCeEEEEeecCCCcEEEE
Confidence 764 555654 59999999986 77777665322 1 559999999999998 5589999999
Q ss_pred ecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 427 GCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 427 ~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++.++.... ..+.+|...+..++++|++++|++++.||.|++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999763332 457799999999999999999999999999999
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=254.79 Aligned_cols=269 Identities=16% Similarity=0.223 Sum_probs=216.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.+++|+ +++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 155 ~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 199 (445)
T 2ovr_B 155 LVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CIHTLYGHT---------- 199 (445)
T ss_dssp CCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS----------
T ss_pred EcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EEEEECCCC----------
Confidence 45799999999998 5699999999999999998765 335677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.++.|. +..+++++.|++|++||+.+++....
T Consensus 200 --~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~--------------------------------------- 234 (445)
T 2ovr_B 200 --STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV--------------------------------------- 234 (445)
T ss_dssp --SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE---------------------------------------
T ss_pred --CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999993 34899999999999999987653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+|...|.+++| +++.|+++ .|+.|++||+++.+...
T Consensus 235 ---------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 235 ---------------------------------------LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp ---------------------------------------EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred ---------------------------------------EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 2467788999998 67888888 89999999998765442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...|.+++| ++ ..+++|+.|+.|++||+++++... . +.+|...+.++.
T Consensus 274 --------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~----~------------~~~~~~~v~~~~ 326 (445)
T 2ovr_B 274 --------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIH----T------------LTGHQSLTSGME 326 (445)
T ss_dssp --------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEE----E------------ECCCCSCEEEEE
T ss_pred --------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEE----E------------EcCCcccEEEEE
Confidence 55678999999999 55 799999999999999999876432 1 345667788887
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
++ ++++++|+. |.|++||+.+ ++++..+..+.... ..|++++|+ +++|++|+.||.|++||+
T Consensus 327 ~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~------------~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 327 LK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQ------------SAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCS------------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred Ee--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCC------------CCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 75 668888765 9999999986 77777776532111 125578885 689999999999999999
Q ss_pred CCCCcceeee-----ccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 429 SEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 429 ~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
.+++ ....+ ..|..++.+++++|++.++++|+.||+
T Consensus 390 ~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 390 KTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp TTCC-EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCCc-eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 9884 44455 478899999999999999999999997
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=252.21 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=214.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCc---ccCccccCcccccccccCCccceeeeecccCCCc--------
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR---DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE-------- 102 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------- 102 (515)
...++.+++|+|||++|+++ .++.|++||+.+++ ........... .....+.....-...+.....+
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDK-IQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCcccc-ccccccccchhhccccccccccccccccCc
Confidence 34688999999999977766 57799999998887 32111100000 0000000000000000000000
Q ss_pred --------cc---c-cccccccceeEEEEEeecCCCcEE-EeeeCCCeEEEEEcc--CCeeEEEeeccCCcccCCCCCCc
Q 010206 103 --------FD---Y-LKSLEIEEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 103 --------~~---~-~~~~~~~~~v~~l~~~~~~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
.. . ...-.+...|++++|+ +++.+| ++++.|+.|++||+. +++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-------------- 144 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT--SDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-------------- 144 (450)
T ss_dssp -------------------CCCCCEEEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE--------------
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEc--CCCCEEEEEECCCCeEEEEECcCCCCceeeeee--------------
Confidence 00 0 0000122579999994 567786 888899999999987 544222111
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
...|...|.+++|+|+++
T Consensus 145 --------------------------------------------------------------~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 145 --------------------------------------------------------------RFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp --------------------------------------------------------------EEECSSCEEEEEECTTSS
T ss_pred --------------------------------------------------------------cccCCCCceEEEEcCCCC
Confidence 124567899999999999
Q ss_pred EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEecCCeEEEEecCccccccccc
Q 010206 248 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
+|+++ .++.|++|++.+....... ...+.+|...|++++|+|+ + .+|++|+.|+.|++||+++++....
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~-- 235 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFT----QEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDK-- 235 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCC----CCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEE--
T ss_pred EEEEEeCCCcEEEEecCCccccccc----ceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeee--
Confidence 99998 8999999999866543200 0255679999999999999 7 8999999999999999987754211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccc--------
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-------- 394 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------- 394 (515)
++.+|...|.+++|+ ++++|++++. +.|++||+.+ ++++..+..+..... .....
T Consensus 236 -------------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 236 -------------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKP-YLNDQHLAPPRFQ 299 (450)
T ss_dssp -------------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGG-GCCTTSBC-----
T ss_pred -------------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhh-hhhhccccccccc
Confidence 134677899999999 9999999875 9999999996 777777765431100 00000
Q ss_pred ---cCCCccceeeEEEcCCCCEEEEec-CCCcEEEEec--CCCC--cceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 395 ---ENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 395 ---~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
....-..+..++|+|++++|++++ .|+.|++|++ .++. .....+..| ..+..++++|++.+++.++.
T Consensus 300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 300 NENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp -----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred ccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence 001112366899999999999998 8999999999 4432 233567777 88999999996555555554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=251.88 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=151.9
Q ss_pred eccCcCCeEEEEecC--------CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE
Q 010206 230 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 230 ~~~~~~~v~~~~~~~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
+.+|...|++++|+| ++++|+++ .|++|++||+++..... .+..|...+.+++|+|++.++|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence 468999999999998 78999998 89999999998765443 44568899999999999756899
Q ss_pred EEecCCeEEEEecCcccccccccceeeecc---------CCCccccccccccceeEEEEc-cCCCEEEEEcC-CeEEEEE
Q 010206 301 YSSSKGSIRLIDMRQSALCDTHSKLFEEQE---------APGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD 369 (515)
Q Consensus 301 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~~~~~s-~~~~~l~s~~~-~~i~iwd 369 (515)
+|+.|+.|++||+++++............. .........+|...+.++.|+ |+++.|++++. +++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 999999999999998764332111110000 001112245688899999997 79999999875 9999999
Q ss_pred eeCCCCCeeeEeeecccccccccc---ccCCCccceeeEEEcC--CCCEEEEecCCCcEEEEecCCCCcceeeeccCCCc
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDL---YENDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 444 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~--~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 444 (515)
+.. .+....+..+.......... .............|+| ++.++++|+.||.|++||+.++.. ...+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCc
Confidence 986 55555555444322211100 0000000112344554 445678899999999999998744 4667788899
Q ss_pred eeeEEECCCCCeeEeecCCCeEEE
Q 010206 445 MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 445 v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|.+++|+|+|++||+++.+|.+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999998887555
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=260.60 Aligned_cols=282 Identities=9% Similarity=0.046 Sum_probs=202.1
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
....|.+++| ++||+++++++.|++|+ |...++.. . .+ ...++ .++|+|+|.
T Consensus 14 ~~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~--gh------~~~v~-------~V~FsPdg~------ 65 (588)
T 2j04_A 14 FEDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---N--CN------SKNLF-------HVKEFPLEF------ 65 (588)
T ss_dssp CSSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---S--SB------GGGTE-------EEEEECCCC------
T ss_pred hhccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---c--CC------CccEE-------EEEECCCCC------
Confidence 3478999999 67899999999999999 65444322 1 11 23455 889999883
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+ +.|+ +++.+... .+...|...|.+++|+|+|+.|+++ .||.|++||.+. ..
T Consensus 66 -------------~---~~~~--~~~~~~~~------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l 118 (588)
T 2j04_A 66 -------------E---NKLD--FELAQQNG------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---ML 118 (588)
T ss_dssp -------------C---CTTT--TSCCCSSC------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EE
T ss_pred -------------c---ceEE--EEeCCCce------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---ee
Confidence 1 2233 23222211 1112557889999999999999998 899999999643 21
Q ss_pred ceecccCccccccCC-----ceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc---ccceeeeccCCCcccccccc
Q 010206 270 NIVDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~-----~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 341 (515)
. .+. |.. .+.+++|+|+| ++|++|+.||+|++||+..+..... ....+..+ ..+|
T Consensus 119 ~-------~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh 181 (588)
T 2j04_A 119 T-------NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGS 181 (588)
T ss_dssp E-------ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTC
T ss_pred e-------ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccc
Confidence 1 233 443 59999999999 9999999999999999988643110 01222211 2567
Q ss_pred ccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCC---eeeEe-eeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 342 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
...|.+++|+|+| +++++.|++|++||+.. +.. ..++. +|... |.+++|+ |++||++
T Consensus 182 ~~~V~sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa 242 (588)
T 2j04_A 182 KDWVTHIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLT 242 (588)
T ss_dssp CCCEEEEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEE
T ss_pred cccEEEEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEE
Confidence 7899999999999 55556679999999985 442 24453 45433 4589999 6899988
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEE--CCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
+ +++|++||+.++. ......+|...+..+++ +|+++.++++++||+ +++.. . .+++
T Consensus 243 ~-~~tIkLWd~~~~~-~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~---------------d----~~~~ 300 (588)
T 2j04_A 243 C-PGYVHKIDLKNYS-ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE---------------D----ELHV 300 (588)
T ss_dssp C-SSEEEEEETTTTE-EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES---------------S----SEEE
T ss_pred e-CCeEEEEECCCCe-EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee---------------c----cEEE
Confidence 7 6999999999763 32223389999999999 999999999999999 77211 1 2558
Q ss_pred cCCCCEEEEE
Q 010206 496 HPSENSIACA 505 (515)
Q Consensus 496 s~~~~~la~~ 505 (515)
+||+..++..
T Consensus 301 spd~~l~a~~ 310 (588)
T 2j04_A 301 TADNIIAPYL 310 (588)
T ss_dssp ECCCSSHHHH
T ss_pred CCCceEEEEc
Confidence 8888776654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=242.59 Aligned_cols=285 Identities=11% Similarity=0.124 Sum_probs=197.4
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..|.+.|++++|+|||++||+|+.+| ++||++.+.+.. . ..+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------~--~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------M--SQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------E--EEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------e--eeec-----------
Confidence 56899999999999999999998776 789998755421 1 1111
Q ss_pred cceeEEEEEeecCCCcEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..+..+++.+.. +.+ ++++.|++|++||+.+++.....
T Consensus 59 -~~~~~~~~~~~~--~~~~~~~~~d~~v~iWd~~~~~~~~~~-------------------------------------- 97 (355)
T 3vu4_A 59 -RHLSKVRMLHRT--NYVAFVTGVKEVVHIWDDVKKQDVSRI-------------------------------------- 97 (355)
T ss_dssp -SCCCEEEECTTS--SEEEEECSSTTEEEEEETTTTEEEEEE--------------------------------------
T ss_pred -CCeEEEEEcCCC--CEEEEEECCccEEEEEECCCCcEEEEE--------------------------------------
Confidence 236777775443 355 56788899999999887643321
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC-Cccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS-NQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~ 269 (515)
.+...|.+++++++. ++++.|+.|++||+.+. +...
T Consensus 98 -----------------------------------------~~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 98 -----------------------------------------KVDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp -----------------------------------------ECSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS
T ss_pred -----------------------------------------ECCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE
Confidence 133578889988764 55566889999999876 3332
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEE--EecCCeEEEEecCcccccccccceeeeccCCCc-ccccccccccee
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 346 (515)
.+.. +...+++++ . .+++ |+.||.|++||++++............. ...+ ...+.+|..+|.
T Consensus 135 --------~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~-~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 135 --------DDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK-AILGKGVLIKAHTNPIK 199 (355)
T ss_dssp --------CCEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEE
T ss_pred --------Eecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCcccccccccccc-ccCcccEEEEccCCceE
Confidence 2222 445566777 3 4444 6889999999998765211100000000 0001 234678999999
Q ss_pred EEEEccCCCEEEEEcC-Ce-EEEEEeeCCCCCeeeEe-e-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 347 DIKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+++|+|+|++|++|+. ++ |++||+++ ++++..+. + |... |.+++|+|++++|++++.|++
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~ 263 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWT 263 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCE
Confidence 9999999999999875 98 99999996 88888887 3 5544 569999999999999999999
Q ss_pred EEEEecCCCCcce-eeec---------------------cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 423 FRVFGCSEGSAES-TTLE---------------------ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~~~~-~~~~---------------------~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++||++...... ..+. .+..+...++|+++++.+++++.||.+++
T Consensus 264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 9999998653211 1111 11223467899999999999999999988
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-31 Score=244.37 Aligned_cols=305 Identities=15% Similarity=0.127 Sum_probs=193.5
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+ +++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVYD--FYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEEC--SSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEEc--CCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 889999995 5677999999999999999986531110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC--CCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||+++.....
T Consensus 49 --------------------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~ 95 (351)
T 3f3f_A 49 --------------------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95 (351)
T ss_dssp --------------------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT
T ss_pred --------------------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc
Confidence 0001 357889999999999 69999998 89999999998764321
Q ss_pred ceecc-cCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 270 NIVDV-KPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 270 ~~~~~-~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
..... ....+..|...|.+++|+|+ + .+|++++.||.|++||+++++........-... ........|...+.
T Consensus 96 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMK---VLSIPPANHLQSDF 171 (351)
T ss_dssp SSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE---SCSCCCSSCSCCCE
T ss_pred cccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccc---ccccccCCccccee
Confidence 00000 00255679999999999999 8 899999999999999999876543211100000 00111235678899
Q ss_pred EEEEccC---CCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCC----CEEEE
Q 010206 347 DIKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVAT 416 (515)
Q Consensus 347 ~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s 416 (515)
+++|+|+ +.++++++. +.+.+|+... ++. +..+.+|... |++++|+|++ ++|++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEE
Confidence 9999997 889998875 7776666653 443 4445555443 5699999998 89999
Q ss_pred ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEE
Q 010206 417 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 417 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
++.||.|++||+.++... .....+..........+....++.+..++.... ..-+............+|...|++++|
T Consensus 236 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999876333 233333333444444455444444444333221 111111111222233458889999999
Q ss_pred cCCCCEEEEEcCCc-EEEEe
Q 010206 496 HPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~~~-~~i~~ 514 (515)
+|++++|++++.|+ +.+|+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEe
Confidence 99999999888665 89996
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-30 Score=235.61 Aligned_cols=276 Identities=11% Similarity=0.168 Sum_probs=213.0
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
.+.|+|+ +++ +|++ +.|++|++||+.+++.......+.+. ..|. +++|+|+|+.+
T Consensus 28 ~~~l~WS--~~~-~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~------~~V~-------~v~~~~~~~~l-------- 82 (318)
T 4ggc_A 28 LNLVDWS--SGN-VLAV-ALDNSVYLWSASSGDILQLLQMEQPG------EYIS-------SVAWIKEGNYL-------- 82 (318)
T ss_dssp CBCEEEC--TTS-EEEE-EETTEEEEEETTTCCEEEEEECCSTT------CCEE-------EEEECTTSSEE--------
T ss_pred ceEEEEC--CCC-EEEE-EeCCEEEEEECCCCCEEEEEEecCCC------CeEE-------EEEECCCCCEE--------
Confidence 5779995 443 5555 56999999999999888776654332 3344 88999999999
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
++|+.|+.|++|+ +.. .++.+. ..+|...+.++.+ ++..++++ .++.+++|+.........
T Consensus 83 ----~sgs~Dg~v~iw~--~~~------~~~~~~-~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~--- 144 (318)
T 4ggc_A 83 ----AVGTSSAEVQLWD--VQQ------QKRLRN-MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA--- 144 (318)
T ss_dssp ----EEEETTSEEEEEE--TTT------TEEEEE-EECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred ----EEEECCCcEEEee--cCC------ceeEEE-ecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE---
Confidence 9999999999999 333 233333 4688888776654 56789988 899999999886654432
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+.+|...+..+.+.+++ .+|++++.|+.|++||+++++........ ...|.+.|.++.++|+
T Consensus 145 ----~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 145 ----TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPW 207 (318)
T ss_dssp ----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTT
T ss_pred ----EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCC
Confidence 557799999999999998 89999999999999999987643221111 2345578999999997
Q ss_pred CCEEE---EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe--cCCCcEEEEe
Q 010206 354 GRHIL---SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFG 427 (515)
Q Consensus 354 ~~~l~---s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--s~dg~i~iw~ 427 (515)
+..++ +++. +.|++||... ........ +... +..++|+|+++.++++ +.|+.|++||
T Consensus 208 ~~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd 270 (318)
T 4ggc_A 208 QSNVLATGGGTSDRHIRIWNVCS-GACLSAVD-AHSQ---------------VCSILWSPHYKELISGHGFAQNQLVIWK 270 (318)
T ss_dssp STTEEEEEECTTTCEEEEEETTT-CCEEEEEE-CSSC---------------EEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEecCCCCEEEEEeccc-cccccccc-ceee---------------eeeeeecccccceEEEEEcCCCEEEEEE
Confidence 65443 3444 9999999985 44433332 2222 4589999999988765 4899999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++++ ..+.++++|..+|++++|+|++++|+||+.||+|++
T Consensus 271 ~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 271 YPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp TTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 9987 556899999999999999999999999999999999
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=246.22 Aligned_cols=249 Identities=16% Similarity=0.168 Sum_probs=197.9
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
...+.+|. ..|++++|+ +++.+|++++.|+.|++||+.........
T Consensus 4 ~~~~~~h~------------~~v~~~~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------- 49 (379)
T 3jrp_A 4 VVIANAHN------------ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLID-------------------- 49 (379)
T ss_dssp -CCEEECC------------CCEEEEEEC--SSSSEEEEEETTSCEEEEEEETTEEEEEE--------------------
T ss_pred cEEecCCc------------ccEEEEEEc--CCCCEEEEEECCCcEEEEecCCCcceeee--------------------
Confidence 34577887 889999995 56779999999999999999754321110
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEE
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFI 250 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 250 (515)
. +.+|...|.+++|+++ +++|+
T Consensus 50 -------------------------------------------------------~-~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 50 -------------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECCGGGCSEEE
T ss_pred -------------------------------------------------------E-ecCCCCcEEEEEeCCCCCCCEEE
Confidence 0 3578899999999987 89999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++ .|+.|++||+++.+.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||+++.....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~------- 139 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS------- 139 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC-------
T ss_pred EeccCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee-------
Confidence 98 899999999987642111 145678999999999999 7 899999999999999998764321
Q ss_pred eccCCCccccccccccceeEEEEcc-------------CCCEEEEEcC-CeEEEEEeeCCCCC----eeeEeeecccccc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPK 389 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~-------------~~~~l~s~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~ 389 (515)
...+.+|...|.+++|+| ++.+|++++. +.|++||++. ... ...+.+|...
T Consensus 140 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~--- 208 (379)
T 3jrp_A 140 -------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW--- 208 (379)
T ss_dssp -------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---
T ss_pred -------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCc---
Confidence 112455778999999999 6999999875 9999999986 432 2344445433
Q ss_pred ccccccCCCccceeeEEEcCC---CCEEEEecCCCcEEEEecCCCCcc----eeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 390 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSAE----STTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~s~dg~i~iw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
|.+++|+|+ +++|++++.||.|++||+.++... ......|...+.+++|+|++++|++++.
T Consensus 209 ------------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 ------------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp ------------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred ------------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 569999999 899999999999999999976322 2233458899999999999999999999
Q ss_pred CCeEEE
Q 010206 463 SGVVRR 468 (515)
Q Consensus 463 d~~v~l 468 (515)
||.|++
T Consensus 277 dg~i~i 282 (379)
T 3jrp_A 277 DNKVTL 282 (379)
T ss_dssp SSSEEE
T ss_pred CCcEEE
Confidence 999999
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=252.50 Aligned_cols=259 Identities=10% Similarity=0.104 Sum_probs=163.1
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--------CCCcEEEE
Q 010206 231 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAY 301 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--------~~~~~l~~ 301 (515)
..|........+.+++.+|+++ .|++|++||++.+....... ...+.+|.+.|.+++|+| ++ ++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las 161 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIAS 161 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEE
Confidence 3455555666677788889998 89999999998765332110 025789999999999998 66 89999
Q ss_pred EecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeee
Q 010206 302 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVAT 379 (515)
Q Consensus 302 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~ 379 (515)
|+.|++|+|||++++.... .+.+|..++.+++|+|++. +|++++. ++|++||+++ ++....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~~----------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~ 224 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPIL----------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEE 224 (393)
T ss_dssp EETTSEEEEEEEETTEEEE----------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----
T ss_pred EECCCeEEEEECCCCceee----------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Cccccc
Confidence 9999999999998765321 1345668899999999874 7888765 9999999986 444333
Q ss_pred Eeeeccccccc----------cccccCCCccceeeEEEc-CCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE
Q 010206 380 FQVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 448 (515)
Q Consensus 380 ~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 448 (515)
...+....... ...........+.++.|+ +|++.|++++.|+.+++||+..+. ....+..|...+..+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPK 303 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-CCceEeeecCccccE
Confidence 32221111000 000001112235578876 799999999999999999998763 334444444333333
Q ss_pred E------------------ECC--CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 449 V------------------QTP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 449 ~------------------~~~--~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
. +.| ++.++++|+.||.|++++.... ........|...|.+++|||||++||+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 2 222 4456788999999999432221 2233445678899999999999999999999
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
++++|.
T Consensus 381 Gv~lvr 386 (393)
T 4gq1_A 381 SVLLTR 386 (393)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999885
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=252.86 Aligned_cols=280 Identities=13% Similarity=0.126 Sum_probs=206.2
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
++++.+|.|++|+ +...... ...... +.+|...|.+++|+| ++++|+++ .|+.|++||+.+........ ...
T Consensus 51 ~~~~~~g~i~v~~--~~~~~~~--~~~~~~-~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-~~~ 124 (402)
T 2aq5_A 51 CEASGGGAFLVLP--LGKTGRV--DKNVPL-VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-EPV 124 (402)
T ss_dssp BCCSSSCCEEEEE--TTCCEEC--CTTCCC-BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC-SCS
T ss_pred EEEcCCCEEEEEE--CccCCCC--CCCCce-EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC-Cce
Confidence 5688999999999 4322111 011112 468999999999999 99999998 89999999998764221100 011
Q ss_pred ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 277 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
..+.+|...|.+++|+|++.++|++++.|+.|++||+++++.... +. ..+|...|.+++|+|++++
T Consensus 125 ~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~----------~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 125 ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT----LG----------PDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE----EC----------TTTCCSCEEEEEECTTSSC
T ss_pred EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE----Ee----------cCCCCCceEEEEECCCCCE
Confidence 256789999999999999756999999999999999998764321 10 0457789999999999999
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeE-eeeccccccccccccCCCccceeeEEEcCCCCEEEEe---cCCCcEEEEecCCC
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEG 431 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---s~dg~i~iw~~~~~ 431 (515)
|++++. +.|++||+++ ++.+..+ ..|.... +..++|+|++++|++| +.|+.|++||+.++
T Consensus 191 l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EEEEETTSEEEEEETTT-TEEEEEEECSSCSSS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred EEEEecCCcEEEEeCCC-CceeeeeccCCCCCc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 999865 9999999986 6666666 4554321 3489999999999999 89999999999987
Q ss_pred Ccceeeec-cCCCceeeEEECCCCCeeE-eecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 432 SAESTTLE-ASKNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 432 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
........ .|...+..++++|++++|+ +|+.|+.|++++-..............+...|.+++|+|++.+++++ ++.
T Consensus 256 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~ 334 (402)
T 2aq5_A 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-CEI 334 (402)
T ss_dssp SSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-TEE
T ss_pred cCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec-cee
Confidence 55333333 5778899999999999986 56689999993322111000011112256899999999999988754 346
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.+|.
T Consensus 335 ~~~~~ 339 (402)
T 2aq5_A 335 ARFYK 339 (402)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77775
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-30 Score=242.84 Aligned_cols=284 Identities=10% Similarity=0.112 Sum_probs=208.6
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
....+.+|. +.|++++|+|.. ++.+|++++.|+.|++||+.+......
T Consensus 31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------- 79 (368)
T 3mmy_A 31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------- 79 (368)
T ss_dssp CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence 345577887 889999996542 157999999999999999986221100
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
..+.+|...|.+++|+|++++|+
T Consensus 80 ---------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 80 ---------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp ---------------------------------------------------------EEEEECSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------EEeccccCCEEEEEECcCCCEEE
Confidence 01357889999999999999999
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++ .|+.|++||+++.+.. .+..|...|.+++| +|++ .+|++++.|+.|++||+++++.. ..+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPM----MVLQ 168 (368)
T ss_dssp EEETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCS----EEEE
T ss_pred EEcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEE----EEEe
Confidence 98 8999999999876533 34568999999999 8888 89999999999999999987643 2222
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
.+ ..+.++.+.+ ..++++ .++.+.+|++................ .+..++
T Consensus 169 ~~-------------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 219 (368)
T 3mmy_A 169 LP-------------ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVA 219 (368)
T ss_dssp CS-------------SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEE
T ss_pred cC-------------CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEE
Confidence 21 3466666664 355555 45999999998532222222111110 122555
Q ss_pred EcCCCCE----EEEecCCCcEEEEecCCCC--cceeeeccCCC------------ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 407 LSGDGGR----VATGSYSNLFRVFGCSEGS--AESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~----l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.++... +++++.||.|++|++.... .....+..|.. ++.+++++|++++|++++.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 5555544 9999999999999998764 23366777765 7999999999999999999999999
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS 509 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~ 509 (515)
++-.. .+.......|...|.+++|+|++++|++++.++
T Consensus 300 wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 300 WDKDA---RTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EETTT---TEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EECCC---CcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 43222 122223446789999999999999999988653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-30 Score=246.27 Aligned_cols=264 Identities=15% Similarity=0.205 Sum_probs=201.0
Q ss_pred ccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 107 ~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+.|.+.|++++|+|. ++.+|++++.||.|++|++........ +.+.
T Consensus 123 ~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------------------~~~~-- 170 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKPE-----------------------------PSGE-- 170 (430)
T ss_dssp EEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSCC-----------------------------TTCC--
T ss_pred EEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCcccccC-----------------------------cccc--
Confidence 33445589999999763 246899999999999999976421000 0000
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~ 264 (515)
...... +.+|...|.+++|+|++. +|+++ .||.|++||+..
T Consensus 171 ------------------------------------~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 171 ------------------------------------CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp ------------------------------------CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred ------------------------------------CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 000111 357889999999999988 89988 899999999987
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
......... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++.... . ...+..|...
T Consensus 214 ~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~------------~~~~~~~~~~ 279 (430)
T 2xyi_A 214 TPKEHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-P------------SHTVDAHTAE 279 (430)
T ss_dssp CCBGGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-C------------SEEEECCSSC
T ss_pred CCCCCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-c------------eeEeecCCCC
Confidence 443222111 0124567999999999999555899999999999999999763110 0 1123457789
Q ss_pred eeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCC
Q 010206 345 ISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSN 421 (515)
Q Consensus 345 i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg 421 (515)
|++++|+|+++ ++++|+. |.|++||++....++..+..|... |++++|+|+++ +|++++.||
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTS
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCC
Confidence 99999999887 5777765 999999999756778888877654 56999999995 699999999
Q ss_pred cEEEEecCCCC-------------cceeeeccCCCceeeEEECCCCC-eeEeecCCCeEEE
Q 010206 422 LFRVFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 468 (515)
Q Consensus 422 ~i~iw~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l 468 (515)
.|++||+.... .+...+.+|...++.++|+|+++ ++++++.|+.|++
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 99999998732 34466778999999999999999 8999999999999
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=250.24 Aligned_cols=269 Identities=17% Similarity=0.254 Sum_probs=199.9
Q ss_pred cccccccceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
....|.+.|++++|+|+ +.+||+|+.+|.|+||++........ ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS--------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC--------
Confidence 35689999999999997 78999999999999999976321100 001123445567787
Q ss_pred ccccceeEEEEEeecCCCc-EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++|+| ++. +|++++.||+|++|++..+......
T Consensus 182 ----~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------------- 220 (430)
T 2xyi_A 182 ----KEGYGLSWNP--NLNGYLLSASDDHTICLWDINATPKEHRV----------------------------------- 220 (430)
T ss_dssp ----SCCCCEEECT--TSTTEEEEECTTSCEEEEETTSCCBGGGE-----------------------------------
T ss_pred ----CCeEEEEeCC--CCCCeEEEEeCCCeEEEEeCCCCCCCCce-----------------------------------
Confidence 7899999965 445 8999999999999999874210000
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+ ..... ..+|...|.+++|+| ++.+|+++ .|+.|++||+++.
T Consensus 221 --------------------------~---------~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~ 264 (430)
T 2xyi_A 221 --------------------------I---------DAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN 264 (430)
T ss_dssp --------------------------E---------ECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS
T ss_pred --------------------------e---------cccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 0 00011 357889999999999 67888888 8999999999976
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.....+ ..+..|...|++++|+|++..+|++|+.||.|++||+++.... . ..+..|...|
T Consensus 265 ~~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~------------~~~~~h~~~v 324 (430)
T 2xyi_A 265 NTSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---L------------HSFESHKDEI 324 (430)
T ss_dssp CSSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---S------------EEEECCSSCE
T ss_pred CCCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---e------------EEeecCCCCE
Confidence 421111 1446789999999999998558999999999999999874321 1 1245577899
Q ss_pred eEEEEccCCC-EEEEEc-CCeEEEEEeeCCC-------------CCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 346 SDIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 346 ~~~~~s~~~~-~l~s~~-~~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.+++|+|+++ +|++++ ++.|++||+...+ ..+..+.+|... |.+++|+|+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~ 389 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPN 389 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSS
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCC
Confidence 9999999985 577765 5999999998522 233333344332 569999999
Q ss_pred CC-EEEEecCCCcEEEEecCCC
Q 010206 411 GG-RVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 411 ~~-~l~s~s~dg~i~iw~~~~~ 431 (515)
++ +|++++.||.|++|++...
T Consensus 390 ~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 390 EPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp STTEEEEEETTSEEEEEEECHH
T ss_pred CCCEEEEEECCCCEEEeEcccc
Confidence 99 8999999999999999753
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=244.20 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=212.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.++.| ++.++++|+.||+|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888887 467999999999999999887653221
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++| +++.|++| .||.|++||+++++...
T Consensus 169 -------------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~-- 207 (435)
T 1p22_A 169 -------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN-- 207 (435)
T ss_dssp -------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--
T ss_pred -------------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--
Confidence 3568889999998 78899998 89999999999776442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|++ ..+++|+.||.|++||++++..... ...+.+|...|.+++|
T Consensus 208 ------~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 208 ------TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ------EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEE-
T ss_pred ------EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-------------eeEecCCCCcEEEEEe-
Confidence 5567999999999974 5899999999999999987653210 1124667789999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+++++++|+. +.|++||+.+ ++.+..+.+|... +.+++| ++++|++|+.||.|++||+++
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred -CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence 6789999865 9999999996 7888888877654 447777 578999999999999999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC--C-CC---ccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--D-NS---ALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~--~-~~---~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
+ .....+.+|..++.++++ ++.++++|+.||.|++++-. . .. ..........|...|.+++| ++++|++
T Consensus 326 ~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 326 G-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp C-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred C-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence 7 455789999999999999 78899999999999993211 1 10 00011223468899999999 7888998
Q ss_pred EcCC-cEEEEe
Q 010206 505 AASN-SLYMYY 514 (515)
Q Consensus 505 ~~~~-~~~i~~ 514 (515)
++.| .+.+|+
T Consensus 401 ~s~Dg~i~iwd 411 (435)
T 1p22_A 401 SSHDDTILIWD 411 (435)
T ss_dssp CCSSSEEEEEC
T ss_pred EeCCCEEEEEE
Confidence 8855 488886
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=248.12 Aligned_cols=318 Identities=11% Similarity=0.145 Sum_probs=215.3
Q ss_pred ccccchhhhh-cc-cccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcc---cCcccCccccCcccccccccCCc
Q 010206 14 PLEWKFSQVF-GE-RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERT---DTRDNGGQRRDLEMMDYSMSRHP 88 (515)
Q Consensus 14 ~~~w~~~~~~-~~-~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~ 88 (515)
-..|++...- +. .......+|..+|++++|+|++++|++|+.||.|++||+. +++.. ..+..
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~----~~~~~--------- 154 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV----KFLNC--------- 154 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE----EEEEE---------
T ss_pred EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee----ecccc---------
Confidence 3458776421 11 1112234799999999999999999999999999999985 33211 00000
Q ss_pred cceeeee--cccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCC
Q 010206 89 EFRYKTE--FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (515)
Q Consensus 89 ~~~~~~~--~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (515)
..... +.. ......+.++.+...+++.+|++++.|+.|++||+++++......
T Consensus 155 --~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------- 209 (437)
T 3gre_A 155 --ECIRKINLKN----------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE------------- 209 (437)
T ss_dssp --EEEEEEEGGG----------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE-------------
T ss_pred --ceeEEEEccC----------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc-------------
Confidence 00011 111 002267889998777888999999999999999998865433211
Q ss_pred ccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC
Q 010206 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 246 (515)
Q Consensus 167 v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (515)
...|...|.+++|+|++
T Consensus 210 ---------------------------------------------------------------~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 210 ---------------------------------------------------------------NSPRHGAVSSICIDEEC 226 (437)
T ss_dssp ---------------------------------------------------------------CCGGGCCEEEEEECTTS
T ss_pred ---------------------------------------------------------------cCCCCCceEEEEECCCC
Confidence 01267899999999999
Q ss_pred CEEEEe-CCCcEEEEeCCCCCcccceecccCcccc-ccCCceEEEEEec----CCCcEEEEEecCCeEEEEecCcccccc
Q 010206 247 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 247 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~p----~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
++|++| .|+.|++||+++.+... .+. .|...|.+++|+| ++ .+|++|+.||.|++||+++++..
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~- 296 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNVLIR--------SWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ- 296 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEE--------EEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE-
T ss_pred CEEEEEcCCCeEEEEEcCCccEEE--------EEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE-
Confidence 999998 89999999998755432 222 5677899996665 55 79999999999999999987643
Q ss_pred cccceeeeccCCCc------------cccccc--cccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc
Q 010206 321 THSKLFEEQEAPGT------------RSFFTE--IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 321 ~~~~~~~~~~~~~~------------~~~~~~--~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
..+..+..... ...+.+ |...|.+++|+ ++++|++|+. +.|++||+.+ ++....+.+|..
T Consensus 297 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~ 371 (437)
T 3gre_A 297 ---YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSR 371 (437)
T ss_dssp ---EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--
T ss_pred ---EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccc
Confidence 22222211100 011333 88899999999 7889999874 9999999996 778888877653
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC--CCeeEeecCC
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS--RPSRPLGSLS 463 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d 463 (515)
... ......++++..+++.. |+.... ........|...|+++++.++ +.+|++|+.|
T Consensus 372 ~~~------------~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 372 FSD------------VFIPTQVTANLTMLLRK--------MKRTST-HSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp CCC------------EEEEEEEETTEEEEEEE--------CC--------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred cCc------------eEEEEEeecceEEEEEe--------cccccc-cccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 321 12255666666555544 333332 233556779999999999988 7899999999
Q ss_pred CeEEE
Q 010206 464 GVVRR 468 (515)
Q Consensus 464 ~~v~l 468 (515)
|.|++
T Consensus 431 G~I~i 435 (437)
T 3gre_A 431 GLIGI 435 (437)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 99998
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=240.08 Aligned_cols=238 Identities=10% Similarity=0.086 Sum_probs=179.0
Q ss_pred ccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCC--CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 231 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
.+|...|.+++|+|++++| +++ .|+.|++||+. +++....+ ....|...|.+++|+|++ .+|++|+.+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g 171 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG 171 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence 4677889999999999996 777 79999999998 55433211 112567889999999998 8999999999
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCCeee-Ee
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~~~~-~~ 381 (515)
.+++|++.++...... ...+.+|...|.+++|+|+ +++|++++. +.|++||+.+ ++.+.. +.
T Consensus 172 ~v~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFT------------QEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCC------------CCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred cEEEEecCCccccccc------------ceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence 9999999877543210 1135667789999999999 999999875 9999999986 666666 44
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec----------------------
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------------- 439 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------------------- 439 (515)
+|... |.+++|+ ++++|++++.|+.|++||+.++.. ...+.
T Consensus 239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhccccccccccc
Confidence 56544 5699999 999999999999999999998743 34443
Q ss_pred ---cCCCceeeEEECCCCCeeEeec-CCCeEEEecC--CCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 440 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 440 ---~~~~~v~~~~~~~~~~~l~s~~-~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.....+..++++|+++++++++ .|+.|++++- ..............+ ..|.+++|+|++.++++++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2245688999999999999998 8999999433 111100111112223 7899999999654444444
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=242.33 Aligned_cols=275 Identities=14% Similarity=0.159 Sum_probs=191.8
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
+.+.|++++|+ +++.+|++|+.||.|++||+.+++......
T Consensus 27 ~~~~V~~v~~s--~~g~~la~g~~dg~v~iw~~~~~~~~~~~~------------------------------------- 67 (447)
T 3dw8_B 27 EADIISTVEFN--HSGELLATGDKGGRVVIFQQEQENKIQSHS------------------------------------- 67 (447)
T ss_dssp GGGSEEEEEEC--SSSSEEEEEETTSEEEEEEECC-----CCC-------------------------------------
T ss_pred ccCcEEEEEEC--CCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------------------------------
Confidence 34889999995 567899999999999999998765211000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc------------CCeEEEEecCCC--CEEEEe-CCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDL 255 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l~s~-~d~ 255 (515)
.+..+ .... +.+|. ..|.+++|+|++ ..|+++ .|+
T Consensus 68 -------------~~~~~----------------~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 68 -------------RGEYN----------------VYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp -------------CCCEE----------------EEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred -------------cccee----------------Eecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 00000 0011 24555 789999999998 788887 899
Q ss_pred cEEEEeCCCCCcccceeccc------------------------------C--ccccccCCceEEEEEecCCCcEEEEEe
Q 010206 256 RINLWNLEISNQSFNIVDVK------------------------------P--ANMEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~------------------------------~--~~~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
+|++||+.+........... + ....+|...|.+++|+|++ .+|++|
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~- 195 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA- 195 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-
Confidence 99999997543210000000 0 0135799999999999998 899998
Q ss_pred cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC-CEEEEEcC-CeEEEEEeeCCCCC----e
Q 010206 304 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----V 377 (515)
Q Consensus 304 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~-~~i~iwd~~~~~~~----~ 377 (515)
.|+.|++||+++.... ...+... ...+.+|...|.+++|+|++ ++|++|+. +.|++||+++ ++. +
T Consensus 196 ~d~~i~iwd~~~~~~~---~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 266 (447)
T 3dw8_B 196 DDLRINLWHLEITDRS---FNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHS 266 (447)
T ss_dssp CSSEEEEEETTEEEEE---EEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTC
T ss_pred CCCeEEEEECCCCCce---eeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-Ccccccee
Confidence 8999999999854321 1111111 11256788999999999998 89999875 9999999986 554 5
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCcee-----------
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR----------- 446 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~----------- 446 (515)
..+..|........ .......|.+++|+|++++|++++. +.|++||+++.......+.+|...+.
T Consensus 267 ~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 267 KLFEEPEDPSNRSF---FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp EEECCC-----CCH---HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eEeccCCCcccccc---ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 66766653100000 0000012669999999999999999 99999999974456678888864322
Q ss_pred ----eEEECCCCCeeEeecCCCeEEEe
Q 010206 447 ----RQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 447 ----~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
.++|+|++++|++|+.||.|+++
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEE
Confidence 38999999999999999999993
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-29 Score=255.05 Aligned_cols=242 Identities=16% Similarity=0.171 Sum_probs=194.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++++|+ +++++|++++.||+|++||+.++......
T Consensus 10 ~~V~~l~~s--~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------------------------- 47 (753)
T 3jro_A 10 ELIHDAVLD--YYGKRLATCSSDKTIKIFEVEGETHKLID---------------------------------------- 47 (753)
T ss_dssp CCEEEECCC--SSSCCEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred ceeEEEEEC--CCCCeEEEEECCCcEEEEecCCCCCccce----------------------------------------
Confidence 899999995 56779999999999999998754321110
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC--CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
. +.+|...|.+++|+|+ +++|++| .||.|++||+.+++...
T Consensus 48 -----------------------------------~-l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~ 91 (753)
T 3jro_A 48 -----------------------------------T-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91 (753)
T ss_dssp -----------------------------------E-ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred -----------------------------------e-ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence 1 3578899999999988 9999998 89999999998764211
Q ss_pred ceecccCccccccCCceEEEEEecC--CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
. ..+.+|...|.+++|+|+ + ..+++|+.||.|++||++++..... ..+.+|...|.+
T Consensus 92 ~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--------------~~~~~~~~~v~~ 150 (753)
T 3jro_A 92 I------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--------------IIIDAHAIGVNS 150 (753)
T ss_dssp E------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--------------EEEECCSSCEEE
T ss_pred c------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--------------eEeecCCCceEE
Confidence 1 155679999999999999 7 8999999999999999988643211 124567789999
Q ss_pred EEEcc-------------CCCEEEEEcC-CeEEEEEeeCCC---CCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 348 IKFAR-------------NGRHILSRDY-MTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 348 ~~~s~-------------~~~~l~s~~~-~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
++|+| ++.++++|+. |.|++||++... .+...+.+|... |++++|+|+
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~---------------V~~l~~sp~ 215 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---------------VRDVAWSPT 215 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---------------EEEEEECCC
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---------------EEEEEeccC
Confidence 99999 5889998865 999999998632 233445555543 569999999
Q ss_pred ---CCEEEEecCCCcEEEEecCCCCc----ceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 411 ---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 411 ---~~~l~s~s~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++|++++.||.|++||+.++.. .......|...+.+++|+|+++++++++.||.|++
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence 89999999999999999987632 22344568899999999999999999999999999
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-28 Score=233.69 Aligned_cols=278 Identities=9% Similarity=0.127 Sum_probs=205.2
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..+.+++|+| ++.++++++.|+.|++||+.+++........
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------- 163 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE------------------------------------- 163 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence 4467899965 5667788888999999999987654321100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
...+|...|.+++|++++++++++ .|+.|++||+++.+...
T Consensus 164 ------------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~-- 205 (433)
T 3bws_A 164 ------------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA-- 205 (433)
T ss_dssp ------------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred ------------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE--
Confidence 024677889999999999999998 89999999998765442
Q ss_pred ecccCccccccCCceEEEEEecCCCcEE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.+..|...+.+++|+|++ ..+ ++++.|+.|++||+++++... .+. +...+.+++|
T Consensus 206 ------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~----~~~-------------~~~~~~~~~~ 261 (433)
T 3bws_A 206 ------TVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIR----KTD-------------KIGLPRGLLL 261 (433)
T ss_dssp ------EEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEE----ECC-------------CCSEEEEEEE
T ss_pred ------EEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEE----Eec-------------CCCCceEEEE
Confidence 345678899999999998 555 566689999999998876422 111 1145899999
Q ss_pred ccCCCEEEEEc---------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCC
Q 010206 351 ARNGRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYS 420 (515)
Q Consensus 351 s~~~~~l~s~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~d 420 (515)
+|+++++++++ ++.|++||+.+ ++.+..+. +... +..++|+|+++.+ ++++.|
T Consensus 262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIG-PPGN---------------KRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp CTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEE-EEEC---------------EEEEEECSSTTEEEEEETTT
T ss_pred cCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeecc-CCCC---------------cceEEECCCCCEEEEEecCC
Confidence 99999998865 47999999985 55554442 2222 3489999999755 677899
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC---------------CCeEEEecCCCCCccccCCcccc
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------------d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
+.|++||+.++ .....+. +...+..++++|+++++++++. ||.|++++..... .. ..+.
T Consensus 325 ~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~-~~~~ 398 (433)
T 3bws_A 325 SKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VK-EFWE 398 (433)
T ss_dssp TEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EE-EEEE
T ss_pred CEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EE-EEec
Confidence 99999999976 3434444 6677889999999998888776 5689984332211 11 1122
Q ss_pred ccCCeeEEEEcCCCCEEEEEc--CCcEEEEe
Q 010206 486 FSMKLLHLAWHPSENSIACAA--SNSLYMYY 514 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~--~~~~~i~~ 514 (515)
....+.+++|+|++++|++++ ++.+.+|.
T Consensus 399 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 399 AGNQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp CSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 356789999999999998764 56788886
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-27 Score=226.61 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=205.1
Q ss_pred CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCC
Q 010206 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (515)
Q Consensus 47 g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~ 126 (515)
+.++++++.|+.|++||+.+++. ...+..| ..+.+++| ++++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~-----------------------~~~~~~~-------------~~~~~~~~--s~dg 43 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVI--SPDG 43 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEE--CTTS
T ss_pred CEEEEEcCCCCEEEEEECCCCeE-----------------------EEEeecC-------------CCcceEEE--CCCC
Confidence 34688899999999999987653 2344555 34899999 4566
Q ss_pred cEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 127 ~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+++ ++++.|++|++||+.+++......... .+. .++|+|+|+.+ ++++..++
T Consensus 44 ~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~ 96 (391)
T 1l0q_A 44 TKVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASS 96 (391)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTT
T ss_pred CEEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCC
Confidence 666 566789999999999998776655432 222 78999999976 13455679
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccC
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 283 (515)
.|++|| +... +....+ .+...+.+++|+|+++.| +++ .++.|++||+.+++... .+.. .
T Consensus 97 ~v~v~d--~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~--------~~~~-~ 157 (391)
T 1l0q_A 97 TLSVID--TTSN------TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN--------TVSV-G 157 (391)
T ss_dssp EEEEEE--TTTT------EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--------EEEC-C
T ss_pred EEEEEE--CCCC------eEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE--------EEec-C
Confidence 999999 3332 222221 234578999999999987 566 79999999998765432 2222 3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-- 361 (515)
..+.+++|+|++..++++++.++.|++||+++++... .+ .+...+.+++|+|++++|++++
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~-------------~~~~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID----TV-------------KVEAAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EE-------------ECSSEEEEEEECTTSSEEEEEEEC
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE----EE-------------ecCCCccceEECCCCCEEEEEecC
Confidence 4579999999993344678889999999998876421 11 1235688999999999988864
Q ss_pred --CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeee
Q 010206 362 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 362 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
++.|++||+.+ ++.+..+..+.. +.+++|+|++++| ++++.|+.|++||+.++ .+...+
T Consensus 221 ~~~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~ 282 (391)
T 1l0q_A 221 KYFNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATM 282 (391)
T ss_dssp SSCCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred cCCCcEEEEECCC-CeEEEEEecCCC----------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEE
Confidence 49999999986 666666655432 3479999999987 67789999999999987 455677
Q ss_pred ccCCCce
Q 010206 439 EASKNPM 445 (515)
Q Consensus 439 ~~~~~~v 445 (515)
..+..+.
T Consensus 283 ~~~~~~~ 289 (391)
T 1l0q_A 283 AVGKNPY 289 (391)
T ss_dssp ECSSSEE
T ss_pred ECCcCCC
Confidence 7666553
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=218.13 Aligned_cols=227 Identities=9% Similarity=0.067 Sum_probs=160.7
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
+..+++.++++.++. + .|++|++||+.+++.... +. +...|.+++|+++. ++++ .++.|++||+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------IK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE--------EE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE--------EE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence 556777787777754 5 689999999987765432 22 56789999999864 3333 47899999998
Q ss_pred cc-cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE--EcC-CeEEEEEeeCCCC---------------
Q 010206 315 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RDY-MTLKLWDINMDSG--------------- 375 (515)
Q Consensus 315 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s--~~~-~~i~iwd~~~~~~--------------- 375 (515)
++ +.... +.. +...+++++ .+++. |+. |.|++||+.+ +.
T Consensus 128 ~~~~~~~~----~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 128 NPWKRITD----DIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL 185 (355)
T ss_dssp TTCCBSSC----CEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred CCceeeEE----ecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence 87 43221 111 234456676 56665 444 9999999986 33
Q ss_pred C-eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc-EEEEecCCCCcceeeec-c-CCCceeeEEEC
Q 010206 376 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT 451 (515)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~-i~iw~~~~~~~~~~~~~-~-~~~~v~~~~~~ 451 (515)
+ +..+.+|... |.+++|+|+|++|++|+.|++ |++||++++. ....+. + |..+|.+++|+
T Consensus 186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-LVREFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCC-EEEEEECTTCCSCEEEEEEC
T ss_pred cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCCCCCcEEEEEEC
Confidence 2 5666667654 569999999999999999998 9999999884 446776 5 99999999999
Q ss_pred CCCCeeEeecCCCeEEEecCCCCC--c-cccCC----c-------------cccccCCeeEEEEcCCCCEEEEEcCCc-E
Q 010206 452 PSRPSRPLGSLSGVVRRVKGADNS--A-LDANG----N-------------AFDFSMKLLHLAWHPSENSIACAASNS-L 510 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l~~~~~~~--~-~~~~~----~-------------~~~~~~~i~~~~~s~~~~~la~~~~~~-~ 510 (515)
|++++|++++.|++|++++-.... . ..+.. . ..........++|+||+++|++++.++ +
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 999999999999999993322111 0 00000 0 000122347799999999999998766 5
Q ss_pred EEEe
Q 010206 511 YMYY 514 (515)
Q Consensus 511 ~i~~ 514 (515)
.+|.
T Consensus 330 ~~~~ 333 (355)
T 3vu4_A 330 ETFK 333 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=224.63 Aligned_cols=185 Identities=10% Similarity=0.035 Sum_probs=134.9
Q ss_pred ccCCceEEEEEec--CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 281 DLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 281 ~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
+|...|.+++|+| ++ .+|++++.||.|++||+++++... ... ..|...+.+++|+|++++|+
T Consensus 123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~----~~~-----------~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYI----VHS-----------AKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEE----EEC-----------CCSSCCCCEEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEE----EEe-----------cCCCCceEEEEECCCCCEEE
Confidence 4668899999999 88 899999999999999999876421 111 12335799999999999999
Q ss_pred EEcC-CeEEEEEeeCCCCCe-eeEee-eccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce
Q 010206 359 SRDY-MTLKLWDINMDSGPV-ATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435 (515)
Q Consensus 359 s~~~-~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~ 435 (515)
+|+. +.|++||+++ ++.+ ..+.. |... |.+++|+|++.+|++++. +.|++||++++...
T Consensus 187 sg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~---------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~- 248 (343)
T 3lrv_A 187 LYSPDGILDVYNLSS-PDQASSRFPVDEEAK---------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGT- 248 (343)
T ss_dssp EECTTSCEEEEESSC-TTSCCEECCCCTTSC---------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTC-
T ss_pred EEcCCCEEEEEECCC-CCCCccEEeccCCCC---------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcc-
Confidence 9865 9999999997 5555 66766 6544 569999999999999994 59999999987433
Q ss_pred eeec---cCCCcee--eEEECCCCCeeEeecC-CCeEEEecC---CCCCccccCCccccccCCeeEEEEcC---CCCEEE
Q 010206 436 TTLE---ASKNPMR--RQVQTPSRPSRPLGSL-SGVVRRVKG---ADNSALDANGNAFDFSMKLLHLAWHP---SENSIA 503 (515)
Q Consensus 436 ~~~~---~~~~~v~--~~~~~~~~~~l~s~~~-d~~v~l~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~la 503 (515)
..+. .|..++. +++|+|++++|++++. |+.+++++- .+.+. ...+..++|+| +.+.|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~ 318 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT----------KDEESALCLQSDTADFTDMD 318 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE----------EEEEEECCC----CCCCEEE
T ss_pred eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE----------ecCceeEecCccccccceeE
Confidence 3333 3445555 5999999999999988 999999321 11121 14566777877 777777
Q ss_pred EEcCCc
Q 010206 504 CAASNS 509 (515)
Q Consensus 504 ~~~~~~ 509 (515)
+++.++
T Consensus 319 ~~~~d~ 324 (343)
T 3lrv_A 319 VVCGDG 324 (343)
T ss_dssp EEEETT
T ss_pred EEecCC
Confidence 666444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=227.02 Aligned_cols=280 Identities=9% Similarity=0.035 Sum_probs=210.0
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.....+.+++|+|++.++++++.++.|++||+.+++..... ....+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~------------------~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLS------------------PPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEEC------------------CCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeec------------------CcccccccC------------
Confidence 34456779999998888889989999999999877642000 001345666
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ++++.++++++.|+.|++||+.+++....
T Consensus 170 ~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~----------------------------------------- 206 (433)
T 3bws_A 170 GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKAT----------------------------------------- 206 (433)
T ss_dssp CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEE-----------------------------------------
T ss_pred CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEE-----------------------------------------
Confidence 78999999 55677999999999999999987653222
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~ 270 (515)
+..|...+.+++|+|+++.++ ++ .|+.|++||+++++...
T Consensus 207 -------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~- 248 (433)
T 3bws_A 207 -------------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR- 248 (433)
T ss_dssp -------------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-
T ss_pred -------------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-
Confidence 134567789999999999885 45 69999999998765432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEe--------cCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
.+. +...+.+++|+|++ ..+++++ .|+.|++||+++++.... ..|.
T Consensus 249 -------~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-----------------~~~~ 302 (433)
T 3bws_A 249 -------KTD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-----------------IGPP 302 (433)
T ss_dssp -------ECC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-----------------EEEE
T ss_pred -------Eec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEee-----------------ccCC
Confidence 222 24458999999998 7888777 488999999988764321 1233
Q ss_pred cceeEEEEccCCCEEEE-EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-
Q 010206 343 ASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY- 419 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~- 419 (515)
..+.+++|+|+++.++. ++. +.|++||+.+ ++.+..+. +... +.+++|+|+|++|++++.
T Consensus 303 ~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~-~~~~---------------~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 303 GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIP-VFDK---------------PNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp ECEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSS---------------EEEEEECTTSSEEEEEECC
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEec-CCCC---------------CCeEEEcCCCCEEEEEecC
Confidence 57889999999986654 454 9999999985 66655554 2221 348999999999888775
Q ss_pred --------------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 420 --------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 420 --------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
||.|++||+.++ .....+.. ...+..++++|++++|++++. |+.|++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CCccccccccccccceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 579999999887 44455555 456889999999999987764 999998
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=209.69 Aligned_cols=185 Identities=11% Similarity=0.032 Sum_probs=135.4
Q ss_pred CCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec---CCCcEEEEEecCCeEEEEecCccc
Q 010206 244 SDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 244 ~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p---~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
++++++.++ .|+.|++|++....+... .+..|...++.++|+| ++ .+|++|+.|++|++||+++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc
Confidence 567777774 399999999955333321 4567888889999998 66 899999999999999999987
Q ss_pred ccccccceeeeccCCCccccccccccceeEEEEccCCCEEE------------EEcC-CeEEEEEeeCCCCCeeeEe---
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRDY-MTLKLWDINMDSGPVATFQ--- 381 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~------------s~~~-~~i~iwd~~~~~~~~~~~~--- 381 (515)
.. +++..+. .+...+.+++|+|+|++++ +|+. ++|++||..+ ++.+..+.
T Consensus 215 ~l----~tL~g~~---------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~ 280 (356)
T 2w18_A 215 LL----KKMHIDD---------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCL 280 (356)
T ss_dssp EE----EEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEECC
T ss_pred EE----EEEcCCC---------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeec
Confidence 63 3333211 1224678889999999874 4554 8999999986 66655442
Q ss_pred --eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCcee-eEEECCCCCeeE
Q 010206 382 --VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR-RQVQTPSRPSRP 458 (515)
Q Consensus 382 --~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~ 458 (515)
+|... .+..+.++.++++++.|++|+|||+.++ +...++++|...+. .++|+|++++|+
T Consensus 281 p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 281 PPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp CTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred cCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 22111 1233334789999999999999999988 45588999987665 589999999999
Q ss_pred eecCCCeEEE
Q 010206 459 LGSLSGVVRR 468 (515)
Q Consensus 459 s~~~d~~v~l 468 (515)
+|+.|++|++
T Consensus 343 SGS~D~TIkl 352 (356)
T 2w18_A 343 AGQKDGNIFV 352 (356)
T ss_dssp EECTTSCEEE
T ss_pred EEECCCcEEE
Confidence 9999999999
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-26 Score=223.71 Aligned_cols=327 Identities=10% Similarity=0.071 Sum_probs=230.0
Q ss_pred EECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEe
Q 010206 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (515)
Q Consensus 42 ~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~ 121 (515)
+|+|++.++++++.++.|.+||..+++.. ..+..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~-----------------------~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV-----------------------KVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE-----------------------EEEecCc------------c-cceEEE-
Confidence 48999999999999999999998877632 3344222 2 888999
Q ss_pred ecCCCcEEEeeeCCCeEEEEEc--cCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCC
Q 010206 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (515)
Q Consensus 122 ~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 199 (515)
++++++|++++.|++|++||+ .+++.....
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i----------------------------------------------- 218 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKVAEI----------------------------------------------- 218 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-----------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-----------------------------------------------
Confidence 567889999999999999999 554432211
Q ss_pred CCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC----CCCEEEEe--CCCcEEEEeCCCCCcccceec
Q 010206 200 PPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 200 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 273 (515)
. +...+..++|+| ++++++++ .+++|.+||..+.+....+ .
T Consensus 219 -------------------------------~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i-~ 265 (543)
T 1nir_A 219 -------------------------------K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-S 265 (543)
T ss_dssp -------------------------------E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-E
T ss_pred -------------------------------e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee-c
Confidence 1 124568899999 99999887 4899999999876654322 1
Q ss_pred ccCccc---cccC-CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 274 VKPANM---EDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 274 ~~~~~~---~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
...... ..|. ..+.++.++|+++.++++...++.|.+||+.+.+.+. ...+. +...+..+.
T Consensus 266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~ 330 (543)
T 1nir_A 266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGG 330 (543)
T ss_dssp CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEE
T ss_pred ccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCce
Confidence 110000 1133 3789999999886778888889999999998765321 01111 224577899
Q ss_pred EccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE-EcCC-CCEEEEec-CCCcEE
Q 010206 350 FARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFR 424 (515)
Q Consensus 350 ~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~s~s-~dg~i~ 424 (515)
|+|+|++++++ .. ++|.+||+.+ ++++..+......-. . . ... ++|+ +.+++++. .|++|.
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g--~---g~~~~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------G--R---GANFVHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEE
T ss_pred ECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------C--C---CcccCCCCCccEEEeccCCCceEE
Confidence 99999987764 33 8999999996 777777654211000 0 0 122 4677 66677775 689999
Q ss_pred EEecCCC------CcceeeeccCCCceeeEEECCCCCeeEeec-------CCCeEEEecCCCCCcc-cc-CC----cccc
Q 010206 425 VFGCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-DA-NG----NAFD 485 (515)
Q Consensus 425 iw~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~d~~v~l~~~~~~~~~-~~-~~----~~~~ 485 (515)
+||+.+. .+.+++++.|...+..+.++|++++|++++ .+++|.+++....... +. .. .+.+
T Consensus 397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 9999872 245588899988889999999999999987 3779999544432211 11 00 0123
Q ss_pred ccCCeeEEEEcCCCCEEEEEc------CCcEEEEeC
Q 010206 486 FSMKLLHLAWHPSENSIACAA------SNSLYMYYA 515 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~------~~~~~i~~~ 515 (515)
+...+.+++|+|||+.|+++. ++.|.||+.
T Consensus 477 ~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 477 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 467899999999999999762 467888863
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=243.15 Aligned_cols=374 Identities=9% Similarity=0.019 Sum_probs=242.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCC------CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (515)
...|...|.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~---- 99 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS---- 99 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC----
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC----
Confidence 45788999999999999999987543 4799999876642 2345555
Q ss_pred cccccccccee-------EEEEEeecCCCcEEEeeeCC------CeEEEEEccCCeeEEEeeccCCccc-----------
Q 010206 105 YLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----------- 160 (515)
Q Consensus 105 ~~~~~~~~~~v-------~~l~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~----------- 160 (515)
..+ ..++| +++++.+++++.+ ..|.+|++.+++...+.........
T Consensus 100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~ 169 (1045)
T 1k32_A 100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 169 (1045)
T ss_dssp --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEecc
Confidence 556 89999 4567667776644 4688888888765443321100000
Q ss_pred -------C----CCCCCcc------------CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeeccc
Q 010206 161 -------A----AGNGPIF------------GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQ 217 (515)
Q Consensus 161 -------~----~~~~~v~------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~ 217 (515)
. .....++ .-......+.|+++ .+++++..++.+++|. +...
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-------------~l~~~~~~dg~~~l~~--~~~~ 234 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-------------RIYFITDIDGFGQIYS--TDLD 234 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-------------EEEEEECTTSSCEEEE--EETT
T ss_pred CCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-------------EEEEEEeccCceEEEE--EeCC
Confidence 0 0000000 00000001222222 1235566778889988 3221
Q ss_pred ccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc---cCccccccCCceEEEEEe-c
Q 010206 218 ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV---KPANMEDLTEVITSAEFH-P 293 (515)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~~-p 293 (515)
.. ..+. +..|. .+...+|+|+|+.|+++.++.|.+||+.. .....+..- .......|...+.+++|+ |
T Consensus 235 g~-----~~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 235 GK-----DLRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp SC-----SCEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred CC-----cceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCC
Confidence 11 1111 23333 45677999999999998889999999843 222111000 000111244578999999 9
Q ss_pred CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccc-ceeEEEEccCCCEEEEEcC-CeEE-EEEe
Q 010206 294 THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDI 370 (515)
Q Consensus 294 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~-~~i~-iwd~ 370 (515)
+| +.|++++ ++.+.+|++..+.... +..|.. .+..++|+ ||+.|+.+++ +.+. +||+
T Consensus 307 dG-~~la~~~-~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~ 366 (1045)
T 1k32_A 307 DG-DLIAFVS-RGQAFIQDVSGTYVLK-----------------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY 366 (1045)
T ss_dssp GG-GCEEEEE-TTEEEEECTTSSBEEE-----------------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred CC-CEEEEEE-cCEEEEEcCCCCceEE-----------------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence 99 7888777 8899999987765311 223334 78999999 9999998776 7777 8888
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
.. ++ ...+..+... +..++|+|||++|++++.++.|++||+.++ .....+..|...+..++|
T Consensus 367 ~~-~~-~~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 367 RT-GK-AEKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAMITDFTI 428 (1045)
T ss_dssp TT-CC-EEECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSCCCCEEE
T ss_pred CC-CC-ceEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCCccceEE
Confidence 64 33 3333333222 458999999999999999999999999987 444566688899999999
Q ss_pred CCCCCeeEeecCCC----------eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 451 TPSRPSRPLGSLSG----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 451 ~~~~~~l~s~~~d~----------~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
+|+|++|++++.++ .+++++.... + ......+...+..++|+|||++|++++.
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 99999998887654 7887332211 1 1123345677889999999999997775
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=223.63 Aligned_cols=217 Identities=14% Similarity=0.117 Sum_probs=159.3
Q ss_pred ccCcCCeEEEEecCCCCEEEEe-CC---CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEE-EEecC
Q 010206 231 HAHDYHINSISNNSDGETFISA-DD---LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 305 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~s~-~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~d 305 (515)
.+|...+.+++|+|+++.|+++ .+ ..|++||+++++.. .+..|...+.+++|+|++ +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 3566789999999999999987 55 49999999876543 345577889999999999 6666 66665
Q ss_pred Ce--EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C--eEEEEEeeCCCCCeee
Q 010206 306 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 379 (515)
Q Consensus 306 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~--~i~iwd~~~~~~~~~~ 379 (515)
+. |++||+++++.. . +..|...+.+++|+|||++|+.+++ + .|.+||+.. ++ ...
T Consensus 245 g~~~i~~~d~~~~~~~-----~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----Q------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCEE-----E------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCEE-----e------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 54 999999876531 1 3345567999999999998887653 4 677778764 33 333
Q ss_pred EeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe
Q 010206 380 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 456 (515)
+..+... +..++|+|||++|++++.+ ..|++||+.++.. ..+..+. .+..++|+|++++
T Consensus 306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence 3333222 4489999999999988764 5899999997743 3455554 8899999999999
Q ss_pred eEeecCCC---eEEEec--CCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 457 RPLGSLSG---VVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 457 l~s~~~d~---~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
|++++.++ .+.+++ +.... ....+.+.|.+++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~~~------~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCCEE------ECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCCCcEE------EeeCCCCCCcCCccccccc
Confidence 99988876 566633 22211 2335778999999999754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-25 Score=207.74 Aligned_cols=318 Identities=8% Similarity=0.067 Sum_probs=211.9
Q ss_pred cccccceEEEEECCCCCeE-EeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~l-asg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++.. ..+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-----------------------~~~~~~----------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-----------------------ATVPAG----------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE-----------------------EEEECS-----------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE-----------------------EEEECC-----------
Confidence 3445568999999999976 67778999999999776532 223322
Q ss_pred ccceeEEEEEeecCCCcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..+.+++|+ +++++++++ +.|+.|++||+.+++......... .+. .++|+|+|+.+
T Consensus 74 --~~v~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l--- 130 (391)
T 1l0q_A 74 --SSPQGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL--- 130 (391)
T ss_dssp --SSEEEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred --CCccceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence 459999994 566677554 567999999999988766554331 122 78999999865
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~ 267 (515)
+++++.++.|++|| +... +....+ .. ...+.+++|+|+++.|+ ++ .++.|++||+++.+.
T Consensus 131 --------~~~~~~~~~v~~~d--~~~~------~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 131 --------YVTNNGDKTVSVIN--TVTK------AVINTV-SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp --------EEEETTTTEEEEEE--TTTT------EEEEEE-EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred --------EEEeCCCCEEEEEE--CCCC------cEEEEE-ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 14667789999999 3322 222222 22 35679999999999884 55 789999999987654
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
... ..+...+.+++|+|++ ..|++++ .++.|++||+++++.. ..+. .| ..
T Consensus 193 ~~~---------~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~------------~~-~~ 245 (391)
T 1l0q_A 193 IDT---------VKVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIP------------VG-PD 245 (391)
T ss_dssp EEE---------EECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEE------------CC-SS
T ss_pred EEE---------EecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEe------------cC-CC
Confidence 321 2245678999999998 7777777 6899999999887542 1222 12 34
Q ss_pred eeEEEEccCCCEEE-EEcC-CeEEEEEeeCCCCCeeeEeeeccccccc--cccccCCCccceeeEEEcCC------C--C
Q 010206 345 ISDIKFARNGRHIL-SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL--CDLYENDSIFDKFECCLSGD------G--G 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~-s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~------~--~ 412 (515)
+.+++|+|++++|+ +++. +.|++||+.+ ++.+..+..+....... ...........+......+. . .
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~ 324 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPV 324 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceE
Confidence 78999999999884 5554 9999999986 77777776554321100 00000111111111222111 1 3
Q ss_pred EEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEe
Q 010206 413 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 413 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 459 (515)
.+...+.|..+++|++.++... .+..+ ...|+++|.+.++
T Consensus 325 ~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 325 QFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVR 364 (391)
T ss_dssp EEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEE
T ss_pred EEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEE
Confidence 4566678899999999877321 22223 3578888877644
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=204.63 Aligned_cols=238 Identities=11% Similarity=0.040 Sum_probs=152.9
Q ss_pred cccceEEEEECCC----CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~----g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
|...|.+++|+|| ++++++++. .++||++.+++.........+.....+.++|+.+.+..+.+|.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--------- 178 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP--------- 178 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC---------
T ss_pred cccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC---------
Confidence 4568999999999 999999874 4888998766543111111233444667788888888888887
Q ss_pred cccceeEEEEEee-cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQ-SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..++.++|++ ..++.+|++++.|++|++||+.+++....+..+... ...+. .++|+|+|+.+
T Consensus 179 ---~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-----v~~v~-------~vafSpdG~~l-- 241 (356)
T 2w18_A 179 ---PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-----QASVC-------HKAYSEMGLLF-- 241 (356)
T ss_dssp ---CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--------CCCE-------EEEEEETTEEE--
T ss_pred ---CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-----eeeeE-------EEEECCCCCEE--
Confidence 6688999987 556789999999999999999999876665422100 00011 33455555443
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+++ .+.. ....+++| .|++|++||+.+++.
T Consensus 242 ----------vs~------------------------------s~~~---------~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 242 ----------IVL------------------------------SHPC---------AKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp ----------EEE------------------------------C---------------------CCEEEEEEETTTTEE
T ss_pred ----------EEe------------------------------ccCC---------CcceeeccCCCcEEEEEECCCCEE
Confidence 000 0000 00134667 799999999987754
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee-
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS- 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 346 (515)
...+. .. .-.+|...+.+..++ + .++++|+.|++|+|||+.+++.... +.+|...+.
T Consensus 273 l~v~~-~~--~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk~l~t----------------L~gH~~~vvs 330 (356)
T 2w18_A 273 VGVML-YC--LPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQCTAL----------------LPPVSDQHWS 330 (356)
T ss_dssp EEEEE-EC--CCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCSEEEE----------------ECCC--CCCC
T ss_pred EEEEE-ee--ccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCcEEEE----------------ecCCCCCeEE
Confidence 32110 00 013566555555554 5 7899999999999999999876422 445555544
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEe
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDI 370 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~ 370 (515)
+++|+|||++|++|+. ++|+|||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999975 99999996
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=228.85 Aligned_cols=335 Identities=8% Similarity=0.047 Sum_probs=212.3
Q ss_pred ccceEEEEECCCCCeEEeecC-CC-----eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
...|.+++|||||++|++++. |+ .|++||+.+++.... +..... .|....+.. ... .......
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~----~~~~~~----~~~~~~~~~-~~~--~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL----VDSKVV----LPGTETLSD-EEK--ARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE----ECGGGT----C---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc----cchhhc----ccccccccc-hhh--hhhhhhh
Confidence 467999999999999999987 88 899999987764200 000000 000000000 000 0000000
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCC---eeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
......|.+++| ++|+++|++++. +.|.+||+.++ +...
T Consensus 105 ~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~----------------------------------- 146 (741)
T 2ecf_A 105 IAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ----------------------------------- 146 (741)
T ss_dssp --CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCB-----------------------------------
T ss_pred hccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEE-----------------------------------
Confidence 000023667777 456667777665 77777777654 2100
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS 265 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 265 (515)
+..|...+.+++|+|||+.|+++.++.|++||+.++
T Consensus 147 --------------------------------------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g 182 (741)
T 2ecf_A 147 --------------------------------------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG 182 (741)
T ss_dssp --------------------------------------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT
T ss_pred --------------------------------------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC
Confidence 234556789999999999999987779999999865
Q ss_pred CcccceecccCccccccCC----------------ceEEEEEecCCCcEEEEEecCC-----------------------
Q 010206 266 NQSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG----------------------- 306 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~----------------~i~~i~~~p~~~~~l~~~~~dg----------------------- 306 (515)
+... + ...+.. .+.+++|+||| +.|++++.|+
T Consensus 183 ~~~~-~-------~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 183 RQMQ-L-------TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEE-C-------CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred CEEE-e-------ccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 4321 1 111111 24789999999 7888887665
Q ss_pred ----------eEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-----C-CeEEEEE
Q 010206 307 ----------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-----Y-MTLKLWD 369 (515)
Q Consensus 307 ----------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-----~-~~i~iwd 369 (515)
.|.+||+.+ ++... +.. ...|...+..++| |||++|+.+. . ..|++||
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~-----~~~---------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQW-----IDL---------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEE-----ECC---------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEE-----ecC---------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 788888877 65311 100 0134567999999 9999998642 2 6899999
Q ss_pred eeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeE-
Q 010206 370 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ- 448 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~- 448 (515)
+.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.+...+. ...+..+...+..+
T Consensus 319 ~~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~ 385 (741)
T 2ecf_A 319 LAS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELL 385 (741)
T ss_dssp TTT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEE
T ss_pred CCC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEe
Confidence 986 66555555443210 00123789999999999999999888887763333 56777777788777
Q ss_pred EECCCCCeeE-eecCCC--eEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 449 VQTPSRPSRP-LGSLSG--VVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 449 ~~~~~~~~l~-s~~~d~--~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.|+|+++.++ +++.++ .++| .+ +.... .+.....+..++||||+++|++..
T Consensus 386 ~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~-------~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 386 AVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ-------RLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE-------ECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee-------ecccCCCceEEEECCCCCEEEEEe
Confidence 5999998764 555555 6776 21 21111 112256688999999999998654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=231.30 Aligned_cols=363 Identities=10% Similarity=0.047 Sum_probs=244.1
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|...+.+++|+++ .++++++.+|.+.||.+..... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~~----------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSFT----------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCCC-----------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCCC-----------
Confidence 478899999999998 6777888889999998753211 011223332
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC---CCCCCccCCCCcCCCceee-cCCCccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYM-ANGGCGE 187 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~-~~g~~l~ 187 (515)
.+..++|+| +++.++.+ .++.|.+|++...++. ........... ...+.+. .++|+ |||+.+
T Consensus 246 --~~~~~~~Sp--DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~-------~~~~S~pdG~~l- 311 (1045)
T 1k32_A 246 --DYYPRHLNT--DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKF-------AEDFSPLDGDLI- 311 (1045)
T ss_dssp --SSCEEEEEE--SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGG-------EEEEEECGGGCE-
T ss_pred --CcceeeEcC--CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccc-------eeeecCCCCCEE-
Confidence 256678854 56678777 5899999999554433 21111000000 0001122 78999 999987
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-CeEEEEecCCCCEEEEe-CCCcEE-EEeCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEI 264 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~-~d~~i~-iwd~~~ 264 (515)
+.+. ++.+.+|+ ....+ .. . +..|.. .+..++|+ +++.|+++ .+..+. +||+..
T Consensus 312 -----------a~~~-~~~i~~~~--~~~~~------~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 312 -----------AFVS-RGQAFIQD--VSGTY------VL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp -----------EEEE-TTEEEEEC--TTSSB------EE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred -----------EEEE-cCEEEEEc--CCCCc------eE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 5444 67888887 33221 11 1 345666 89999999 99999987 777788 889875
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.+.. .+..|...+..++|+|++ +.|++++.++.|++||+.+++... ...+|...
T Consensus 369 ~~~~---------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~----------------~~~~~~~~ 422 (1045)
T 1k32_A 369 GKAE---------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV----------------IERSREAM 422 (1045)
T ss_dssp CCEE---------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE----------------EEECSSSC
T ss_pred CCce---------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEE----------------eccCCCCC
Confidence 5422 233677889999999999 899999999999999998876421 12345577
Q ss_pred eeEEEEccCCCEEEEEcC-----------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 345 ISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
+.+++|||||++|++++. +.|++||+.. ++ ...+..+... +..++|+|||++
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~---------------~~~~~~spdG~~ 485 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSH---------------DYAPAFDADSKN 485 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSB---------------EEEEEECTTSCE
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcc---------------cCCceEcCCCCE
Confidence 899999999999987543 3899999985 43 4444444322 347899999999
Q ss_pred EEEecCCCcEEEEecCCCC------------------------------------------cceeeeccCCCceeeEEEC
Q 010206 414 VATGSYSNLFRVFGCSEGS------------------------------------------AESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~ 451 (515)
|++++.++...+|+..... .....+..|...+..+.++
T Consensus 486 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s 565 (1045)
T 1k32_A 486 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 565 (1045)
T ss_dssp EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC
T ss_pred EEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEc
Confidence 9999887776666532210 0112334466778889999
Q ss_pred CCCCeeEe-----------ecCC--CeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEeC
Q 010206 452 PSRPSRPL-----------GSLS--GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 515 (515)
Q Consensus 452 ~~~~~l~s-----------~~~d--~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~~ 515 (515)
|+++++++ .+.+ ..+.+++..... . .. ....+..++|||||++|++++.+.+.+|++
T Consensus 566 ~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---~--~~--l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~ 635 (1045)
T 1k32_A 566 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---V--TE--VKNNLTDLRLSADRKTVMVRKDDGKIYTFP 635 (1045)
T ss_dssp SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---E--EE--EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCeEEEEecccCcccccccccCCCceEEEEECCCCc---E--EE--eecCcceEEECCCCCEEEEEcCCcEEEEeC
Confidence 99987775 1233 344443221111 0 00 125688999999999999999889999863
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=223.83 Aligned_cols=336 Identities=11% Similarity=0.022 Sum_probs=206.5
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+..|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34678999999998876 68999999999887642 223333300 0148
Q ss_pred EEEEEeecCCCcEEEeeeCC---------CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+++| ++|+++|++++.+ +.+.+||+.+++...+..
T Consensus 64 ~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------- 108 (723)
T 1xfd_A 64 IRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------------------------- 108 (723)
T ss_dssp SEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred ceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence 99999 5678899998764 677788887765311100
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
..+|...+..++|+|||+.|+.+.++.|++||+.+++
T Consensus 109 -------------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~ 145 (723)
T 1xfd_A 109 -------------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQ 145 (723)
T ss_dssp -------------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSC
T ss_pred -------------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCc
Confidence 1234455778899999999999866899999998765
Q ss_pred cccceecccCc--cccccC---------CceEEEEEecCCCcEEEEEecCC-----------------------------
Q 010206 267 QSFNIVDVKPA--NMEDLT---------EVITSAEFHPTHCNMLAYSSSKG----------------------------- 306 (515)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~---------~~i~~i~~~p~~~~~l~~~~~dg----------------------------- 306 (515)
... +...... .+.++. ..+.+++|+||| +.|++++.++
T Consensus 146 ~~~-~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 146 AIR-VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp CEE-EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred eEE-EecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 331 1100000 000111 133789999999 8888877543
Q ss_pred -----eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----C-CeEEEEEeeCCCCC
Q 010206 307 -----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGP 376 (515)
Q Consensus 307 -----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~~~~ 376 (515)
.|++||+.+++.. ..+..+. .+..+...+..++|||||++|++.. . ..|++||+.+ ++.
T Consensus 224 ~~~~~~l~~~d~~~~~~~----~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~ 292 (723)
T 1xfd_A 224 ENPSISLHVIGLNGPTHD----LEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVC 292 (723)
T ss_dssp CCCEEEEEEEESSSSCCC----EECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCE
T ss_pred CCCeeEEEEEECCCCcee----EEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-Ccc
Confidence 6788888766521 1111100 0122346789999999999887642 2 6899999985 665
Q ss_pred eeeEeeec-cccccccccccCCCccceeeEEEcCCCCEEEE--ecCCC------cEEEEecCCCCcc--eeeeccCCCce
Q 010206 377 VATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFGCSEGSAE--STTLEASKNPM 445 (515)
Q Consensus 377 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg------~i~iw~~~~~~~~--~~~~~~~~~~v 445 (515)
...+..+. ..... . ...++|+|||+.|+. +..++ .|++||+.+++.. ...+..+...+
T Consensus 293 ~~~~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 361 (723)
T 1xfd_A 293 TKKHEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV 361 (723)
T ss_dssp EEEEEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE
T ss_pred eEEEEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEE
Confidence 55444332 11100 0 016899999997774 44666 5777773233230 23444333334
Q ss_pred e-eEEECCCCCeeEeecCC---CeEEE--ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 446 R-RQVQTPSRPSRPLGSLS---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 446 ~-~~~~~~~~~~l~s~~~d---~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
. .++|+|+++.|+..+.+ +.++| ++...............+...+..++|+|||++|++..
T Consensus 362 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 4 46899999998765544 66776 22111000000000011456789999999999998654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=197.87 Aligned_cols=291 Identities=11% Similarity=0.098 Sum_probs=205.0
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEc--ccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
+.+++|+|||++|++++.|+.|.+||+ .+++. ...+..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~-----------------------~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-----------------------VAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-----------------------EEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-----------------------EEEEecC-------------CCc
Confidence 889999999999999999999999998 54432 2233322 558
Q ss_pred EEEEEeecC----CCcEEEeee-CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 116 ~~l~~~~~~----~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..++| ++ +++++++++ .+++|.+||..+++...........
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~-------------------------------- 270 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-------------------------------- 270 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC--------------------------------
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc--------------------------------
Confidence 99999 45 688998887 4899999999888765543321000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccC-cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA--DDLRINLWNLEISNQ 267 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~ 267 (515)
... ...| ...+.++.++|++..++++ .++.|.+||+.+.+.
T Consensus 271 --------------------------~~~----------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 271 --------------------------VDT----------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN 314 (543)
T ss_dssp --------------------------SSS----------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS
T ss_pred --------------------------cCc----------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 000 0012 2378899999987776654 799999999987653
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
.. +. .+ .+...+..+.|+|++ ++|+ ++..+++|.+||+.++++.. .+.... ..|.+...
T Consensus 315 l~-~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~~----~i~~g~--------~ph~g~g~ 374 (543)
T 1nir_A 315 LT-VT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLSA----LVDVGK--------TPHPGRGA 374 (543)
T ss_dssp CE-EE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEE----EEECSS--------SBCCTTCE
T ss_pred ce-eE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEEE----eeccCC--------CCCCCCCc
Confidence 32 10 11 245567889999999 6555 55568999999999987532 222211 11323233
Q ss_pred EEEEccC-CCEEEEEc--CCeEEEEEeeCC------CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 347 DIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 347 ~~~~s~~-~~~l~s~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+ ++|+ ++.++++. +++|.+||+.+. .+.++++..|... +..++++|+|++|+++
T Consensus 375 ~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~---------------~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 375 NF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG---------------SLFIKTHPKSSHLYVD 438 (543)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---------------CCCEECCTTCCEEEEC
T ss_pred cc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC---------------ceEEEcCCCCCcEEEe
Confidence 33 4676 66677764 489999999852 5677888777543 2379999999999998
Q ss_pred c-------CCCcEEEEecCCCCcceeee--------ccCCCceeeEEECCCCCeeEeec-----CCCeEEEec
Q 010206 418 S-------YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRVK 470 (515)
Q Consensus 418 s-------~dg~i~iw~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~~-----~d~~v~l~~ 470 (515)
+ .+++|.+||+.+++.....+ ..+...+..++|+|+|+.++.+. .|+.|.+++
T Consensus 439 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 439 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 7 27899999999886553443 45678899999999999988663 478999844
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-22 Score=191.13 Aligned_cols=260 Identities=12% Similarity=0.113 Sum_probs=189.2
Q ss_pred ccccccceEEEEECC--------------CCCeEEeecCC------CeEEEEEcccCcccCccccCcccccccccCCccc
Q 010206 31 EVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~--------------~g~~lasg~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
..+|...+..+++++ .+..++.++.+ +.|++||+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------
Confidence 346666677666664 25566665543 7999999864332
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCC---eEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
..+.+|. ..|.+++| ++++++|++++.|+ .|++||+.+++...
T Consensus 172 ---~~l~~~~------------~~v~~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~----------------- 217 (415)
T 2hqs_A 172 ---FVVHRSP------------QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------------- 217 (415)
T ss_dssp ---EEEEEES------------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEE-----------------
T ss_pred ---EEEeCCC------------CcceeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEE-----------------
Confidence 3345565 77999999 56788999998875 99999998775322
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
+..|...+.+++|+|+++
T Consensus 218 --------------------------------------------------------------l~~~~~~~~~~~~spdg~ 235 (415)
T 2hqs_A 218 --------------------------------------------------------------VASFPRHNGAPAFSPDGS 235 (415)
T ss_dssp --------------------------------------------------------------EECCSSCEEEEEECTTSS
T ss_pred --------------------------------------------------------------eecCCCcccCEEEcCCCC
Confidence 123446788999999999
Q ss_pred EEE-Ee-CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CC--eEEEEecCcccccc
Q 010206 248 TFI-SA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCD 320 (515)
Q Consensus 248 ~l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~ 320 (515)
.|+ ++ .++ .|++||+.+++.. .+..|...+.+++|+|++ +.|++++. ++ .|.+||+.+++..
T Consensus 236 ~la~~~~~~g~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~- 304 (415)
T 2hqs_A 236 KLAFALSKTGSLNLYVMDLASGQIR---------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ- 304 (415)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCEE---------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-
T ss_pred EEEEEEecCCCceEEEEECCCCCEE---------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-
Confidence 888 44 444 5999999865432 445677889999999999 77777775 45 6777788776521
Q ss_pred cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C---CeEEEEEeeCCCCCeeeEeeeccccccccccccC
Q 010206 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 396 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (515)
. +..+...+.+++|+|+|++|++++ + ..|.+||+.+ ++. ..+..+. .
T Consensus 305 ----~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~---------- 355 (415)
T 2hqs_A 305 ----R------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L---------- 355 (415)
T ss_dssp ----E------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S----------
T ss_pred ----E------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C----------
Confidence 1 122335688999999999998754 2 5899999985 443 3333332 1
Q ss_pred CCccceeeEEEcCCCCEEEEecCCC---cEEEEecCCCCcceeeeccCCCceeeEEECCCC
Q 010206 397 DSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 454 (515)
Q Consensus 397 ~~~~~v~~~~~s~~~~~l~s~s~dg---~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 454 (515)
+.+++|+|||++|++++.++ .|++||+..+ ....+..|...+..++|+|.-
T Consensus 356 -----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 356 -----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp -----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCC
T ss_pred -----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCcccccc
Confidence 44899999999999888777 7999999743 446888999999999999974
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=208.23 Aligned_cols=248 Identities=6% Similarity=-0.020 Sum_probs=161.1
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCC-----CCcccceecccCc-------cccccCCceEEEEEecCCCcEEEEE
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
..+.+++|+|||+.|+++.++.|++||+.+ ++... +...... ..+.+...+.+++|+||| +.|+++
T Consensus 121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~-~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~ 198 (706)
T 2z3z_A 121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA-VTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFY 198 (706)
T ss_dssp TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE-SCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEE
T ss_pred ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE-eccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEE
Confidence 345667899999999988789999999986 44321 1100000 000111225889999999 888888
Q ss_pred e---------------------------------cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 303 S---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 303 ~---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
+ .+..|.+||+.+++.... .. ...|...+.+++
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~----~~----------~~~~~~~~~~~~ 264 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL----QT----------GEPKEKFLTNLS 264 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC----CC----------CSCTTCEEEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee----cc----------CCCCceeEeeEE
Confidence 7 346799999987753210 00 113446789999
Q ss_pred EccCCCEEEEEc-CC-----eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC--CCCEEEEecCCC
Q 010206 350 FARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSN 421 (515)
Q Consensus 350 ~s~~~~~l~s~~-~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~s~dg 421 (515)
|+|||+.|++++ ++ .|.+||+.+ ++....+....... .+..+..++|+| ||++|++++.|+
T Consensus 265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 265 WSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred EECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCC
Confidence 999999888753 23 899999986 53333333221110 000023689999 999999999999
Q ss_pred cEEEEecCCCCcceeeeccCCCceee-EEECCCCCeeEeecC-CC----eEEEecCCCCCccccCCccccccCCeeEEEE
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAW 495 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~-d~----~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 495 (515)
.+++|.+.........+..+...+.. ++++|+++.|+.++. ++ .+..++..... ...+.+...+.+++|
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~ 408 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----TKDLTPESGMHRTQL 408 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----CEESCCSSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----ceeccCCCceEEEEE
Confidence 99999886333445667777777776 799999998765544 44 34443211110 122235667899999
Q ss_pred cCCCCEEEEEcC-----CcEEEEe
Q 010206 496 HPSENSIACAAS-----NSLYMYY 514 (515)
Q Consensus 496 s~~~~~la~~~~-----~~~~i~~ 514 (515)
||||++|+++.. ..+++|+
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCCCEEEEEecCCCCCcEEEEEE
Confidence 999999986643 2388886
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-21 Score=177.52 Aligned_cols=288 Identities=9% Similarity=0.098 Sum_probs=181.6
Q ss_pred EEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 41 IEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 41 v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
..|.++++ .+++++.++.|.+||..+++.. ..+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence 45666555 4777788999999999877642 2222222 446 899
Q ss_pred EeecCCCcEEEeeeC-CCeEEEEEccCCee-EEEeeccCCcccCCCCCCccCCCCcCCC-ceeecCCCccccccccCCCC
Q 010206 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (515)
Q Consensus 120 ~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~ 196 (515)
| +++++++++++. ++.|.+||+.+++. .........+ . . ++++|+|+.+
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------~--------~~~~~s~dg~~l---------- 98 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS--------M--------ADVDITPDDQFA---------- 98 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC--------C--------CCEEECTTSSEE----------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC--------c--------cceEECCCCCEE----------
Confidence 9 556776766655 89999999998876 4433332111 1 4 8999999988
Q ss_pred CCCCCCCc-c--cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCc-EEEEeCCCCCcccc
Q 010206 197 SSFPPGGV-S--SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFN 270 (515)
Q Consensus 197 ~~~~~~~~-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~-i~iwd~~~~~~~~~ 270 (515)
++...+ + .|.+|| +...+ ....+ .....+.+++|+|++++|+++ .++. |.+|++........
T Consensus 99 --~~~~~~~~~~~i~v~d--~~~~~------~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 99 --VTVTGLNHPFNMQSYS--FLKNK------FISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp --EECCCSSSSCEEEEEE--TTTTE------EEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred --EEecCCCCcccEEEEE--CCCCC------eEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 544444 3 899999 33221 22221 233456899999999866554 5678 99999985443321
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.. .........+..++|+|++..+++++..++.|.+||+.+++... ....+.. ...+..++|
T Consensus 167 ~~----~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~-------------~~~~~~~~~ 228 (331)
T 3u4y_A 167 TG----QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGT-------------NNLPGTIVV 228 (331)
T ss_dssp EE----EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC-------------SSCCCCEEE
T ss_pred cC----CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccC-------------CCCCceEEE
Confidence 10 01112345579999999993355555678999999998876411 0111211 145688999
Q ss_pred ccCCCEEEEEc-C-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEE
Q 010206 351 ARNGRHILSRD-Y-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRV 425 (515)
Q Consensus 351 s~~~~~l~s~~-~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~i 425 (515)
+|+|++++.+. . +.|.+||+.+ ++. +..+..+-.... ........++|+|||++|+++ ..++.|.+
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLIDP--------RPLFGANQMALNKTETKLFISANISRELKV 299 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCCC--------GGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccCC--------CCcccccceEECCCCCEEEEecCCCCcEEE
Confidence 99999877654 3 8899999985 444 222221100000 111112368999999988654 55679999
Q ss_pred EecCCC
Q 010206 426 FGCSEG 431 (515)
Q Consensus 426 w~~~~~ 431 (515)
||+...
T Consensus 300 ~d~~~~ 305 (331)
T 3u4y_A 300 FTISGK 305 (331)
T ss_dssp EETTSC
T ss_pred EEecCC
Confidence 999854
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=180.21 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=143.4
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd 312 (515)
.+..++|+|+++.|+++ .++.|.+||+..+. ..... ..+. ....+.+++|+|++ +.+++++ .++.|.+||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~~~----~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVGVV----DVVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEEEE----EEEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-ccccc----cccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 56789999999988765 58999999995221 11111 0122 23458899999998 6666666 899999999
Q ss_pred cCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+.+ ++........+... ....+..++|+|+++++++++ . +.|.+||+......+...........
T Consensus 158 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~- 225 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE- 225 (343)
T ss_dssp ECTTSCEEEEEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT-
T ss_pred ecCCCceeeecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc-
Confidence 987 43211000011110 113578899999999776643 3 99999999632222221111110000
Q ss_pred ccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCC--CC-cceeeeccCCCceeeEEECCCCCeeEeec-CCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-LSG 464 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~ 464 (515)
. ......+..++|+|+|++|+ ++..++.|++|++.. +. .....+..+.. +..++++|++++|++++ .++
T Consensus 226 ---~--~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~ 299 (343)
T 1ri6_A 226 ---N--FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH 299 (343)
T ss_dssp ---T--CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred ---c--ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence 0 00011234799999999877 555899999999983 22 22234444444 88999999999888777 579
Q ss_pred eEEEe--cC--CCCCccccCCccccccCCeeEEEEcCCCCE
Q 010206 465 VVRRV--KG--ADNSALDANGNAFDFSMKLLHLAWHPSENS 501 (515)
Q Consensus 465 ~v~l~--~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 501 (515)
.+.++ +. .+.. . ...+.......+++|.|+.+.
T Consensus 300 ~v~v~~~d~~~g~~~---~-~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 300 HISVYEIVGEQGLLH---E-KGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp EEEEEEEETTTTEEE---E-EEEEECSSSCCEEEEEEEC--
T ss_pred eEEEEEEcCCCceee---E-ccccccCCCCeeEEEEcccCC
Confidence 99883 21 1111 0 011112345667777776543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=177.93 Aligned_cols=258 Identities=13% Similarity=0.118 Sum_probs=177.8
Q ss_pred eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEe
Q 010206 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (515)
Q Consensus 52 sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~ 131 (515)
.++.++.|++||+.+++.. .+..|. ..|.+++| ++++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------------------------~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------------------------VVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------------------------EEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCcee------------------------eeccCC------------cceEeeEE--CCCCCEEEE
Confidence 4567899999998876532 233344 77999999 556778888
Q ss_pred eeCCCeEEEEEccC-CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEee
Q 010206 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP 210 (515)
Q Consensus 132 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~ 210 (515)
++ ++.|.+||+.+ ++......
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 80 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDT--------------------------------------------------------- 80 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence 76 78999999987 64322110
Q ss_pred eeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceE
Q 010206 211 VVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 287 (515)
Q Consensus 211 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (515)
..+...+.+++|+|++++|+++ . ++...+|.++....... .+.. ...+.
T Consensus 81 --------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~ 132 (297)
T 2ojh_A 81 --------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSY 132 (297)
T ss_dssp --------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEE
T ss_pred --------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCcc
Confidence 1122557788999999999886 2 34555555432221111 2222 33488
Q ss_pred EEEEecCCCcEEE-EEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCe
Q 010206 288 SAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMT 364 (515)
Q Consensus 288 ~i~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~ 364 (515)
.++|+|++ +.|+ ++..++.+++|++...... .. .+..+...+.++.|+|++++|+.++ ++.
T Consensus 133 ~~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~------------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 196 (297)
T 2ojh_A 133 WHGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ET------------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ 196 (297)
T ss_dssp EEEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EE------------ECCCSSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred ceEECCCC-CEEEEEECCCCceEEEEEECCCCc---ce------------EcccCCCccccceECCCCCEEEEEecCCCC
Confidence 99999999 5555 7888999999986432110 01 1233446789999999999888643 489
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-----------CcEEEEecCCCCc
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSA 433 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-----------g~i~iw~~~~~~~ 433 (515)
+++|++.........+..+... +..++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 197 ~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 197 MQIWRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CEEEEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred ccEEEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999998545555555544322 4589999999999988765 5699999987743
Q ss_pred c-eeeeccCCCceeeEEECCCCCeeEeecCCC
Q 010206 434 E-STTLEASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 434 ~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
. +..+..|...+..+.|+|++++|++++.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 3 234557888999999999999998886653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-21 Score=179.81 Aligned_cols=283 Identities=8% Similarity=0.031 Sum_probs=196.1
Q ss_pred ccccceEEEEECCCCCeEEeecC-------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~------ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND------ 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES------
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC------
Confidence 44567889999999998888763 568999998876632 112211
Q ss_pred cccccccceeEEEEEeecCCCcEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
..+..++|+ ++++++++ ...++.|.+||..+++...........
T Consensus 89 -------~~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------------------- 133 (353)
T 3vgz_A 89 -------LKPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK-------------------------- 133 (353)
T ss_dssp -------SCCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC--------------------------
T ss_pred -------CCcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc--------------------------
Confidence 346778884 55665555 455799999999988765543321000
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEe
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWN 261 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd 261 (515)
.. .......+.+++|+|+++.++++ .++.|.+||
T Consensus 134 -------------------------------~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 134 -------------------------------RT------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp -------------------------------CC------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred -------------------------------cc------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 00 00111236789999999977765 378999999
Q ss_pred CCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+.+.+... .+..+...+.+++|+|++ +.+++++.++.|.+||+.+++.... +.... .++
T Consensus 171 ~~~~~~~~--------~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~----~~~~~--------~~~ 229 (353)
T 3vgz_A 171 GGNIKLKT--------AIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKILSR----KKLLD--------DGK 229 (353)
T ss_dssp TTTTEEEE--------EECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEEEE----EECCC--------SSS
T ss_pred CCCCceEE--------EecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEEEE----EEcCC--------CCC
Confidence 98765432 222244557889999999 8888889999999999988765321 11110 112
Q ss_pred ccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE-ec
Q 010206 342 IASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GS 418 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~s 418 (515)
...+..++|+|++++++.++ . +.|.+||+.+ ++.+..+..... ..++|+|+|++++. ..
T Consensus 230 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 230 EHFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp CCCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEET
T ss_pred CcccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEEC
Confidence 34678899999999887754 4 8999999986 666666654332 17899999996554 45
Q ss_pred CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 419 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 419 ~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.++.|.+||+.++ .....+... ..+..++++|++++|+.+..+
T Consensus 292 ~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 292 QAGKVSVIDAKSY-KVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEETTTT-EEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEECCCC-eEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 7899999999887 444455443 367899999999977666544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-22 Score=179.64 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=163.0
Q ss_pred cCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCC-CCcccceecccCcccccc-CCceEEEEEecCCCcEEEEEe--cCCe
Q 010206 232 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS 307 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~--~dg~ 307 (515)
.|...|.+++|+|++++|+++.++.|++||+.+ ++... ....+ ...+.+++|+|++ +.|++++ .++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEK--------VDTGFATICNNDHGISPDG-ALYAISDKVEFGK 109 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEE--------CCCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceE--------eccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence 466789999999999999998888999999987 54321 12223 4678899999999 8888888 3345
Q ss_pred EEEEec--CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE-EEc-CCeEEEEEeeCCCCCeeeEeee
Q 010206 308 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 308 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~-~~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.++|.+ .++.. ..+ ..+ ..+..++|+|++++|+ ++. ++.++||++.........+..+
T Consensus 110 ~~l~~~~~~~~~~-----~~~------------~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGTP-----RLM------------TKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCCC-----EEC------------CSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCce-----EEe------------ecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 555554 43321 111 111 2488899999999887 454 4899999987534444444433
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
... +..++|+|++++|+.++ .++.+++|++.........+..|...+..+.|+|++++|++++.
T Consensus 172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 322 45899999999887665 58999999987433455677788888999999999999988887
Q ss_pred C-----------CeEEEec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 463 S-----------GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 463 d-----------~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+ +.+.+++ +.+.. .......+...+..++|+||+++|++++.+
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCE---EEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCce---eeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6 3466533 22211 111122456789999999999999977643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=200.16 Aligned_cols=306 Identities=8% Similarity=-0.015 Sum_probs=193.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeC-CC-----eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~-d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+.+++| ++||++|++++. |+ .|++||+.+++.......... .|+|+.+
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~----------------------~~~~~~~ 92 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV----------------------LPGTETL 92 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT----------------------C------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc----------------------ccccccc
Confidence 56999999 667889999988 88 999999999886665543311 0223222
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
.. +.... ..... ......+.+++|+|||++|+++.++.|++||+.++.
T Consensus 93 ------------~~-----------------~~~~~-~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~ 140 (741)
T 2ecf_A 93 ------------SD-----------------EEKAR-RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEG 140 (741)
T ss_dssp ----------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCS
T ss_pred ------------cc-----------------hhhhh-hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCC
Confidence 00 00000 00000 011234778999999999999866999999998762
Q ss_pred --cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc----
Q 010206 267 --QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE---- 340 (515)
Q Consensus 267 --~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 340 (515)
... .+..|...+.+++|+||| +.|++++ ++.|++||+.+++.... ..... .....+
T Consensus 141 ~~~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~~~----~~~~~----~~~~~g~~~~ 202 (741)
T 2ecf_A 141 KAAVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQMQL----TADGS----TTIGNGIAEF 202 (741)
T ss_dssp TTSCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEEEC----CCCCC----SSEEESCCCH
T ss_pred cceEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEEEe----ccCCc----cceeccccce
Confidence 221 445577889999999999 8888776 56999999988654211 00000 000000
Q ss_pred ----cccceeEEEEccCCCEEEEEc-CC---------------------------------eEEEEEeeCCCCCeeeEee
Q 010206 341 ----IIASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 341 ----~~~~i~~~~~s~~~~~l~s~~-~~---------------------------------~i~iwd~~~~~~~~~~~~~ 382 (515)
....+..+.|||||++|++++ ++ .|.+||+.+.++.......
T Consensus 203 v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 282 (741)
T 2ecf_A 203 VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG 282 (741)
T ss_dssp HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC
T ss_pred eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC
Confidence 012257899999999998864 23 7788887630222222111
Q ss_pred --eccccccccccccCCCccceeeEEEcCCCCEEEEecC-----CCcEEEEecCCCCcceeeeccCCC----ceeeEEEC
Q 010206 383 --HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQT 451 (515)
Q Consensus 383 --~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----dg~i~iw~~~~~~~~~~~~~~~~~----~v~~~~~~ 451 (515)
+.. .+..++| |||++|++++. +..|++||+.+++. ...+..+.. .+..++|+
T Consensus 283 ~~~~~---------------~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 283 KEQDI---------------YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp SCSSE---------------EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEEC
T ss_pred CCcce---------------EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEEC
Confidence 111 1458999 99999986653 67899999998743 344444433 45689999
Q ss_pred CCCCeeEeecCCCeEEE--ecCCCCCccccCCccccccCCeeEE-EEcCCCCEEEE-EcCC---cEEEEe
Q 010206 452 PSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHL-AWHPSENSIAC-AASN---SLYMYY 514 (515)
Q Consensus 452 ~~~~~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~la~-~~~~---~~~i~~ 514 (515)
|+++++++++.|+.++| ++... . ......+...|..+ +|+||++.|++ ++.+ .+.||.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG----K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS----C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCCeEEEEecCCCccEEEEEcCCC----C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999997777 22110 0 11223356678787 59999998874 4444 466774
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-22 Score=201.61 Aligned_cols=329 Identities=11% Similarity=0.021 Sum_probs=197.8
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
.++|+|||++++++ .|+.|++||+.+++.. ..+..|.. . ...+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~-----~----~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM-----K----SVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH-----H----TTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc-----c----ccceeeEE
Confidence 78999999766655 5999999999877632 12222210 0 01388999
Q ss_pred EeecCCCcEEEeeeC---------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 120 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
| ++||++|++++. ++.|++||+.+++......
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------------------------------------- 107 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------------------------------------- 107 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-------------------------------------
Confidence 9 567889998876 6889999988876311000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
+ ...+..++|+|||+.|+.+.++.|++||+.+++....
T Consensus 108 ---------------------------------------l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 108 ---------------------------------------L---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp ---------------------------------------C---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred ---------------------------------------c---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEE
Confidence 0 1346678999999999998788999999986654211
Q ss_pred eecccC-ccccccCC---------ceEEEEEecCCCcEEEEEecCC----------------------------------
Q 010206 271 IVDVKP-ANMEDLTE---------VITSAEFHPTHCNMLAYSSSKG---------------------------------- 306 (515)
Q Consensus 271 ~~~~~~-~~~~~~~~---------~i~~i~~~p~~~~~l~~~~~dg---------------------------------- 306 (515)
...... ..+.++.. ...+++|+||| +.|++++.|.
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 000000 00111211 12489999999 8888887652
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEE----eeCCCCCe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPV 377 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd----~~~~~~~~ 377 (515)
.|++||+.+++.... . .+.. ...+.+|...+..++||||++++++..+ ..|.+|| +.+ ++..
T Consensus 225 ~l~~~d~~~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~ 295 (719)
T 1z68_A 225 RIFIIDTTYPAYVGP-Q-EVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCP 295 (719)
T ss_dssp EEEEEESSCHHHHCC-E-ECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECC
T ss_pred EEEEEECCCCCccce-e-EccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceE
Confidence 788899887653100 0 0000 0113456678999999999887777432 3588888 554 3333
Q ss_pred eeE----eeeccccccccccccCCCccceeeEEEcCCCCEEEE--ecCCC--cEEEEecCCCCcceeeeccCCCceeeEE
Q 010206 378 ATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQV 449 (515)
Q Consensus 378 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~ 449 (515)
..+ ..+...... .....+.|+|||+.|+. ...+| .|++|++.++. ...+..+...+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 296 KTQEHIEESRTGWAGG----------FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIF 363 (719)
T ss_dssp GGGEEEEECSSSCSSS----------SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEE
T ss_pred EEEecccccCCceEcc----------ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEE
Confidence 333 223222100 00015789999996553 44555 56777877653 345555556677777
Q ss_pred ECCCCCeeEeecCC-----CeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 450 QTPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 450 ~~~~~~~l~s~~~d-----~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
+. +++.++..+.+ +..++ ++ +.......+.....++...+..++|+||+++++..
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 67 77766555544 66666 22 12110001111111245678899999999988854
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-20 Score=172.37 Aligned_cols=283 Identities=11% Similarity=0.108 Sum_probs=173.8
Q ss_pred ccccccceEEEEECCCCCeEEeecCC-CeEEEEEcc--cCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~d-g~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
...|...+.+++|+|+|++|++++.+ +.|.+|++. +++.. ....+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~-------- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------FAAESALP-------- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------EEEEEECS--------
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------eccccccC--------
Confidence 45677889999999999988888876 899999987 33311 11222221
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+..++| +++++++++++. ++.|.+||+..+.......
T Consensus 84 -----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------------- 123 (343)
T 1ri6_A 84 -----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD--------------------------------- 123 (343)
T ss_dssp -----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEE---------------------------------
T ss_pred -----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccc---------------------------------
Confidence 35788999 556777777654 8899999986332111100
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~ 264 (515)
. . .....+.+++|+|+++.|+++ .++.|.+||+.+
T Consensus 124 -----------------------------------------~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 124 -----------------------------------------V-V-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp -----------------------------------------E-E-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred -----------------------------------------c-c-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 0 0 111346788999999977765 699999999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEE-EEEecCCeEEEEecCc--ccccccccceeeeccCCCcccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.......... . ........+..++|+|++ +.+ +++..++.|.+||+.. +... .......... -...
T Consensus 161 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~------~~~~ 229 (343)
T 1ri6_A 161 DGHLVAQDPA-E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPE------NFSD 229 (343)
T ss_dssp TSCEEEEEEE-E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCT------TCCS
T ss_pred CCceeeeccc-c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCc------cccc
Confidence 3322111000 0 011123568899999999 655 4555899999999954 3211 0111110000 0011
Q ss_pred ccceeEEEEccCCCEEEE-Ec-CCeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 342 IASISDIKFARNGRHILS-RD-YMTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s-~~-~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
...+..++|+|+|++|++ +. ++.|.+||+....... ..+..+.. +..++|+|+|++|++
T Consensus 230 ~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 230 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----------------PRGFNVDHSGKYLIA 293 (343)
T ss_dssp CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----------------CCCEEECTTSSEEEE
T ss_pred cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----------------cceEEECCCCCEEEE
Confidence 235678999999998875 43 4999999998322222 22222111 238999999998887
Q ss_pred ec-CCCcEEEEecC--CCCcc-eeeeccCCCceeeEEECCC
Q 010206 417 GS-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 417 ~s-~dg~i~iw~~~--~~~~~-~~~~~~~~~~v~~~~~~~~ 453 (515)
++ .++.|.+|++. ++... +..+... .....+++.|+
T Consensus 294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 294 AGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp ECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 77 68999999554 44211 2233332 33446666554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-21 Score=193.69 Aligned_cols=307 Identities=12% Similarity=0.054 Sum_probs=186.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+++|||| +.++.+ .++.|++||+.+++.. .+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~------------------------~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT------------------------YLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE------------------------EEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE------------------------EccCCc------------ccc
Confidence 57999999999 555555 3589999999776531 122233 557
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccC-----CeeEEEeeccCCcccCCCCCC-ccC-CCCcCCCceeecCCCcccc
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IFG-SHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~-v~~-~~~~~~~~~~~~~g~~l~~ 188 (515)
.+++| +++|+.|+++ .|+.|++|++.+ ++............ ..+. +.. .......+.|+|||+.|..
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL---VYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE---EESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe---EcccchhhhhcCCCceEEECCCCCEEEE
Confidence 88999 5677788884 689999999998 76554332221100 0000 000 0001127899999998843
Q ss_pred ccccCCC-------------------CCCC--CCCCcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCC
Q 010206 189 NFGCASN-------------------DSSF--PPGGVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDG 246 (515)
Q Consensus 189 ~~~~~~~-------------------~~~~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 246 (515)
....... .+-. ....+..|.+|| +...+ ...... ..|...+.+++|+||+
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d--~~~~~------~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH--LATGK------TVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--TTTTE------EEECCCCSCTTCEEEEEEECTTS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--CCCCc------eEeeccCCCCceeEeeEEEECCC
Confidence 2210000 0000 012456788888 33221 111111 2566789999999999
Q ss_pred CEEEEe-CCC-----cEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCCcEEEEEecCCeEEEEecC-ccc
Q 010206 247 ETFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSA 317 (515)
Q Consensus 247 ~~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~~~l~~~~~dg~i~~wd~~-~~~ 317 (515)
+.|+++ .++ .|++||+.+++....+... ........+.+++|+| ++ ++++++..++.+++|++. ++.
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC
Confidence 998886 444 8999999876333222100 0001112346789999 98 799999999999999876 332
Q ss_pred ccccccceeeeccCCCccccccccccceeE-EEEccCCCEEEEE-cC-C----eEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 318 LCDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~-~~-~----~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.. .. +..|...+.. ++|+|+|+.|+.+ .+ + .|..||+.. ++ ...+. +...
T Consensus 346 ~~----~~------------l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~---- 402 (706)
T 2z3z_A 346 LI----RQ------------VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESG---- 402 (706)
T ss_dssp EE----EE------------CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSS----
T ss_pred EE----Ee------------cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCc----
Confidence 21 11 2334456766 7999999988764 33 4 455555543 22 33332 2211
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCC
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 432 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~ 432 (515)
+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 403 -----------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 -----------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -----------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -----------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4589999999988866433 569999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-20 Score=168.58 Aligned_cols=272 Identities=7% Similarity=0.034 Sum_probs=177.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++.+.++.|.+||+.+++........... + .++++|+|+.+ +++...++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------~-~~~~s~dg~~l-----------~~~~~~~~ 62 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDF---------------V-DTAITSDCSNV-----------VVTSDFCQ 62 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE---------------E-EEEECSSSCEE-----------EEEESTTC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCc---------------c-eEEEcCCCCEE-----------EEEeCCCC
Confidence 345777788999999999999876665533111 1 67899999966 13344478
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC-C--cEEEEeCCCCCcccceecccCccccc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMED 281 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 281 (515)
.|.+|| ....+. .... ...+.....+++|+|++++|+++ .+ + .|.+||+.+.+.... +.
T Consensus 63 ~i~~~d--~~~~~~-----~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~--------~~- 125 (331)
T 3u4y_A 63 TLVQIE--TQLEPP-----KVVA-IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST--------IP- 125 (331)
T ss_dssp EEEEEE--CSSSSC-----EEEE-EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE--------EE-
T ss_pred eEEEEE--CCCCce-----eEEe-cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE--------EE-
Confidence 999998 333221 0112 23444555459999999999966 44 3 999999987654321 12
Q ss_pred cCCceEEEEEecCCCcEEEEEecCCe-EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 282 LTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 282 ~~~~i~~i~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
....+.+++|+|++..+++++..++. |.+|++.......... ... + ........++|+|+|++++.+
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~---------~-~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEF---------I-SGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEE---------E-CSSSSEEEEEECTTSSEEEEE
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC--Ccc---------c-cCCCCccceEECCCCCEEEEE
Confidence 23456899999999445555566688 9999987543211100 000 0 112357899999999977654
Q ss_pred -cC-CeEEEEEeeCCCCC---eeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcc
Q 010206 361 -DY-MTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 361 -~~-~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~ 434 (515)
.. +.|.+||+.+ ++. +..+..... +..++|+|||++|+.+ ..++.|.+||+.+++..
T Consensus 194 ~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 194 NLIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ETTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred eCCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 33 8999999986 666 555543221 2379999999977655 46789999999887431
Q ss_pred -eeeeccC----CCce---eeEEECCCCCeeEee-cCCCeEEEec
Q 010206 435 -STTLEAS----KNPM---RRQVQTPSRPSRPLG-SLSGVVRRVK 470 (515)
Q Consensus 435 -~~~~~~~----~~~v---~~~~~~~~~~~l~s~-~~d~~v~l~~ 470 (515)
...+..+ ..+. ..++++|++++|+.+ ..++.+.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 1222221 2222 458999999987555 4567898833
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=192.82 Aligned_cols=288 Identities=9% Similarity=0.047 Sum_probs=179.0
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC---CeEEEEecCCCCEEEEe
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGETFISA 252 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~ 252 (515)
.++|+|||+.+ ++ +.++.|++|| ..+.+ .... +..|.. .|.+++|+|||++|+++
T Consensus 21 ~~~~spdg~~~------------~~-~~dg~i~~~d--~~~g~------~~~~-~~~~~~~~~~v~~~~~SpDg~~l~~~ 78 (723)
T 1xfd_A 21 EAKWISDTEFI------------YR-EQKGTVRLWN--VETNT------STVL-IEGKKIESLRAIRYEISPDREYALFS 78 (723)
T ss_dssp CCCBSSSSCBC------------CC-CSSSCEEEBC--GGGCC------CEEE-ECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred ccEEcCCCcEE------------EE-eCCCCEEEEE--CCCCc------EEEE-eccccccccccceEEECCCCCEEEEE
Confidence 78999999965 55 6889999999 43322 2222 344443 48999999999999987
Q ss_pred -CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 253 -DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 253 -~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+ +.+.+||+.+++.. .+ .....|...+..++|+||| +.|++++. +.|++||+.+++...
T Consensus 79 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l-----~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~-- 148 (723)
T 1xfd_A 79 YNVEPIYQHSYTGYYVLSKIPHGDPQ-SL-----DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIR-- 148 (723)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCE-EC-----CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEE--
T ss_pred ecCccceeecceeeEEEEECCCCceE-ec-----cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEE--
Confidence 43 78899999876541 11 1223455568899999999 88888776 799999998875421
Q ss_pred cceeeeccCCCccccccccc---------cceeEEEEccCCCEEEEEcC-C-----------------------------
Q 010206 323 SKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRDY-M----------------------------- 363 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~-~----------------------------- 363 (515)
....... ...+.++. +.+.+++|||||+.|++++. +
T Consensus 149 --~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 223 (723)
T 1xfd_A 149 --VVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS 223 (723)
T ss_dssp --EECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred --EecCCCC---CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence 1111000 00011111 13478999999999998642 2
Q ss_pred -----eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----CCcEEEEecCCCCcc
Q 010206 364 -----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGSAE 434 (515)
Q Consensus 364 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~----dg~i~iw~~~~~~~~ 434 (515)
.|++||+.+ ++....+..+.... ..-..+..++|||||++|++.+. +..|++||+.+++..
T Consensus 224 ~~~~~~l~~~d~~~-~~~~~~l~~~~~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 224 ENPSISLHVIGLNG-PTHDLEMMPPDDPR---------MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp CCCEEEEEEEESSS-SCCCEECCCCCCGG---------GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCeeEEEEEECCC-CceeEEeeCCccCC---------CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 677888775 44334443321100 00112458999999999876643 468999999987433
Q ss_pred eeeec-cCCCce----eeEEECCCCCeeEe--ecCCC----e--EEEec---CCCCCccccCCccccccCCeeE-EEEcC
Q 010206 435 STTLE-ASKNPM----RRQVQTPSRPSRPL--GSLSG----V--VRRVK---GADNSALDANGNAFDFSMKLLH-LAWHP 497 (515)
Q Consensus 435 ~~~~~-~~~~~v----~~~~~~~~~~~l~s--~~~d~----~--v~l~~---~~~~~~~~~~~~~~~~~~~i~~-~~~s~ 497 (515)
..+. .+...+ ..++|+|+|+.|+. +..++ . +.+++ +.... ...........+.. ++|+|
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~sp 369 (723)
T 1xfd_A 294 -KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDE 369 (723)
T ss_dssp -EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEET
T ss_pred -EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcC
Confidence 3333 333333 37899999998775 45566 4 44433 11100 01111112334544 69999
Q ss_pred CCCEEEEEcC----CcEEEEe
Q 010206 498 SENSIACAAS----NSLYMYY 514 (515)
Q Consensus 498 ~~~~la~~~~----~~~~i~~ 514 (515)
||+.|++.+. ....||.
T Consensus 370 dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 370 KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp TTTEEEEEESSSCTTCCEEEE
T ss_pred CCCEEEEEEcCCCCcceEEEE
Confidence 9999986543 3466764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=168.85 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=154.3
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc-cc-cccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA-NM-EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 310 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~ 310 (515)
+..++|+|+++.++.+ .++.|.+||+.+++....+. .... .. ......+.+++|+|++ +.+++++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLV-LDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEE-SCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEe-cCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence 4568899999866554 58999999998776433211 1000 00 0001137899999998 6555555 4789999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
||+.+++... .+. .+...+.+++|+|+|+++++++. +.|.+||+.+ ++....+.......
T Consensus 169 ~d~~~~~~~~----~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~-- 229 (353)
T 3vgz_A 169 VDGGNIKLKT----AIQ------------NTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGK-- 229 (353)
T ss_dssp EETTTTEEEE----EEC------------CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSS--
T ss_pred EcCCCCceEE----Eec------------CCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCC--
Confidence 9998876532 111 11234778999999999988765 9999999986 66665554322100
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee-EeecCCCeEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVR 467 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~ 467 (515)
...+..++|+|++++|+.++ .++.|.+||+.+++ ....+.... ...++++|+++++ ++...++.|.
T Consensus 230 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 230 ---------EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp ---------CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred ---------CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence 01134799999999877665 45999999998874 334444333 2579999999965 4555789999
Q ss_pred EecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 468 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 468 l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
+++..... .. ..+.....+..++|+|||++|+++..+
T Consensus 298 ~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 298 VIDAKSYK---VV-KTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEETTTTE---EE-EEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEECCCCe---EE-EEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 84432211 11 112234578999999999988876543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=190.98 Aligned_cols=271 Identities=13% Similarity=0.024 Sum_probs=178.4
Q ss_pred ccccceEEEEECCCCCeEEeecC-CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+..+|.+++|+|||++||+++. ||+++||++.+++.. .+..|.
T Consensus 19 ~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~------------------------~lt~~~----------- 63 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV------------------------KLNREP----------- 63 (582)
T ss_dssp HHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE------------------------ECCSSC-----------
T ss_pred HhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE------------------------eeeccc-----------
Confidence 34678999999999999999876 999999998655421 122222
Q ss_pred cceeEEEEEeecCCCcEEEeeeC---CCeEEEEEccC--CeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 112 EEKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE--KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
...+..+.|+ ++ +.+++++. +...++|.+.. ......
T Consensus 64 ~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~----------------------------------- 105 (582)
T 3o4h_A 64 INSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR----------------------------------- 105 (582)
T ss_dssp CSEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE-----------------------------------
T ss_pred ccccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccc-----------------------------------
Confidence 0468899995 44 56666654 45566665543 110000
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC--EEEEeCCCcEEEEeCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEI 264 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~ 264 (515)
+ ... ..+...+|+|+++ .++++.++.+.+||+.+
T Consensus 106 ---------------------------l---------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~ 141 (582)
T 3o4h_A 106 ---------------------------L---------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDG 141 (582)
T ss_dssp ---------------------------C---------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEET
T ss_pred ---------------------------c---------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccC
Confidence 0 001 1122456777765 44445555566999986
Q ss_pred CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----CeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
++.. .+..+.. .+++|+||| +.|++++.+ +.|++||+.+++.. . +..
T Consensus 142 g~~~---------~l~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~------------l~~ 192 (582)
T 3o4h_A 142 GGLR---------ELARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V------------FDS 192 (582)
T ss_dssp TEEE---------EEEEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E------------ECC
T ss_pred CcEE---------EeecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E------------eec
Confidence 6432 1222223 789999999 899988777 78999999887632 1 344
Q ss_pred cccceeEEEEccCCCEEEEEcC-C--eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 341 IIASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
|...+..++|||||+.|++++. + .|++||+.+ ++.. .+..+........ ..+....+|+|||.+++++
T Consensus 193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~ 263 (582)
T 3o4h_A 193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVA 263 (582)
T ss_dssp SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEE
T ss_pred CCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEE
Confidence 5567899999999999997654 6 899999985 5544 4444433211000 0001123399999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+.|+.+++|++ + .... .....+..++++ +++++++++.+.+
T Consensus 264 ~~~g~~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 264 RREGRSAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp EETTEEEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred EcCCcEEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 99999999999 4 2222 334678889999 9999988887754
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-19 Score=168.63 Aligned_cols=266 Identities=9% Similarity=0.101 Sum_probs=164.9
Q ss_pred cccccceEEEEECCCCCeEEeecC---CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
..+...+..++|+|||+ |++++. ++.|.+|++.+++.. .+..+..+.
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~-------- 85 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG-------- 85 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES--------
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC--------
Confidence 45667788999999999 555443 689999999665421 222223333
Q ss_pred ccccceeEEEEEeecCCCcEEEeee-CCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
..+..++| ++++++|++++ .++.|.+|++. ++........... +.
T Consensus 86 ----~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~~-- 132 (347)
T 3hfq_A 86 ----TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------GH-- 132 (347)
T ss_dssp ----CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------CC--
T ss_pred ----CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------CC--
Confidence 56889999 55677888887 78999999995 3333222211100 00
Q ss_pred ccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 187 ERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
.. . ...+...+.+++|+|+++++++. .++.|.+|++...
T Consensus 133 -------------------------------~p----~-----~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 133 -------------------------------GP----R-----PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp -------------------------------CS----S-----TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred -------------------------------CC----C-----ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 00 0 01233568899999999966556 6899999999833
Q ss_pred CcccceecccCccccc-cCCceEEEEEecCCCc-EEEEEecCCeEEEEecCc--ccccccccceeeeccCCCcccccccc
Q 010206 266 NQSFNIVDVKPANMED-LTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
....... .+.. ....+..++|+|++ + +++++..++.|.+|++.. ++.. ....+...... + ..
T Consensus 173 g~~~~~~-----~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~~-----~-~~ 238 (347)
T 3hfq_A 173 GQLSEQS-----VLTMEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPAD-----Y-TA 238 (347)
T ss_dssp SCEEEEE-----EEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCTT-----C-CS
T ss_pred CcEEEee-----eEEcCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCCC-----C-CC
Confidence 3221111 1111 23357889999999 6 455566789999999874 3321 01111110000 0 01
Q ss_pred ccceeEEEEccCCCEEEE-Ec-CCeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 342 IASISDIKFARNGRHILS-RD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~~~~l~s-~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
...+..++|+|||++|++ .. ++.|.+|++...+. .+..+..+... +..++|+|||++|+++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVV 303 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEE
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEE
Confidence 135788999999998865 44 49999999974222 22223222211 2389999999988877
Q ss_pred cC-CCcEEEEecC
Q 010206 418 SY-SNLFRVFGCS 429 (515)
Q Consensus 418 s~-dg~i~iw~~~ 429 (515)
+. ++.|.+|++.
T Consensus 304 ~~~~~~v~v~~~d 316 (347)
T 3hfq_A 304 NQNTDNATLYARD 316 (347)
T ss_dssp ETTTTEEEEEEEC
T ss_pred EcCCCcEEEEEEe
Confidence 65 5899999553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-20 Score=169.83 Aligned_cols=278 Identities=9% Similarity=0.095 Sum_probs=182.1
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc-cCCCcccccccccccc-eeEEEEEeecCC
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~l~~~~~~~ 125 (515)
++|++++.++.|.+||..+++.. ..+. ++. . .+..++| +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVD-----------------------KVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-----------------------EEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEE-----------------------EEEEcCCC------------CCCccceEE--cCC
Confidence 57899999999999998876532 2222 110 1 3778899 456
Q ss_pred CcEEE-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC--
Q 010206 126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (515)
Q Consensus 126 ~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-- 202 (515)
++.++ ++..++.|.+||+.+++............ ....+ ..++++|+|+.+ +++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE---RVKSL-------FGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE---EEECT-------TCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc---ccccc-------cceEECCCCCEE------------EEEecc
Confidence 65654 45667899999999988665544321000 00011 178999999887 5543
Q ss_pred ----------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCccccee
Q 010206 203 ----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 203 ----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~ 272 (515)
.++.|.+|| +... +....+ .....+.+++|+|++++|+++ ++.|.+||+.+++....+
T Consensus 103 ~~~~~~~~~~~~~~i~v~d--~~~~------~~~~~~--~~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~- 170 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYD--AETL------SRRKAF--EAPRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK- 170 (337)
T ss_dssp EEECSSCEEECCCEEEEEE--TTTT------EEEEEE--ECCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE-
T ss_pred cccccccccccCceEEEEE--CCCC------cEEEEE--eCCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee-
Confidence 468999999 3321 122221 123457889999999988887 688999999876543211
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEe-cCC-----------------------eEEEEecCcccccccccceeee
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg-----------------------~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
....+..+ +.|+|++ ..++..+ .++ .|.+||+.+++.. ...
T Consensus 171 -----~~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~- 235 (337)
T 1pby_B 171 -----PIQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE- 235 (337)
T ss_dssp -----CSTTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE-
T ss_pred -----eccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee-
Confidence 11111122 2678888 4443333 233 4688999887642 111
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
+..+...+.+++|+|+|++++++ ++.|.+||+.+ ++.+..+..+.. +.+++|+
T Consensus 236 ---------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s 288 (337)
T 1pby_B 236 ---------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVS 288 (337)
T ss_dssp ---------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEEC
T ss_pred ---------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEEC
Confidence 12233567889999999999988 68999999985 665555543321 2389999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
|||++|++++.++.|++||+.+++ ....+.
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~-~~~~~~ 318 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLE-KKGQVD 318 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCC-EEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEECcCCc-EEEEEE
Confidence 999999999999999999999874 334443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-19 Score=162.87 Aligned_cols=216 Identities=9% Similarity=0.092 Sum_probs=136.0
Q ss_pred CcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc----cccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
+...+..++|+|++++|+++ .++.|.+|++........+...... ....+...+.+++|+|++ +++++...++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCC
Confidence 34567789999999988776 5899999999643322111110000 001123458899999999 6777777789
Q ss_pred eEEEEecC-cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeee
Q 010206 307 SIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 307 ~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.|.+||+. +++... ...+... ....+..++|+|||+++++. .. +.|.+|++......+......
T Consensus 163 ~v~~~~~~~~g~~~~--~~~~~~~-----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSE--QSVLTME-----------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp EEEEEEECTTSCEEE--EEEEECC-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEE--eeeEEcC-----------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 99999998 443211 1111110 01246789999999977764 33 899999998422222211111
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCC--cceeeeccCCCceeeEEECCCCCeeEee
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
...... . .....+..++|+|||++| ++...++.|.+|++...+ .....+..+...+..++|+|++++|+++
T Consensus 230 ~~~~~~----~--~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 303 (347)
T 3hfq_A 230 KTIPAD----Y--TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV 303 (347)
T ss_dssp ESSCTT----C--CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred eecCCC----C--CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence 100000 0 000124479999999987 455678999999997432 2234555666678899999999988877
Q ss_pred cCC-CeEEE
Q 010206 461 SLS-GVVRR 468 (515)
Q Consensus 461 ~~d-~~v~l 468 (515)
+.+ +.+.+
T Consensus 304 ~~~~~~v~v 312 (347)
T 3hfq_A 304 NQNTDNATL 312 (347)
T ss_dssp ETTTTEEEE
T ss_pred EcCCCcEEE
Confidence 654 88887
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=170.28 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=157.8
Q ss_pred eEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-----------
Q 010206 237 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------- 303 (515)
Q Consensus 237 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~----------- 303 (515)
+..++|+|+++.++. + .++.|.+||+.+++....+. .. ....+...+.+++|+|++ +.++++.
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE-cC--CcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 567899999987655 4 68999999998766432211 00 000012256789999998 7777775
Q ss_pred -cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEee
Q 010206 304 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 304 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~ 382 (515)
.++.|.+||+.+++... .+.. ...+.+++|+|+|++|+++ ++.|.+||+.+ ++....+..
T Consensus 112 ~~~~~i~v~d~~~~~~~~----~~~~-------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~ 172 (337)
T 1pby_B 112 VQPTRVALYDAETLSRRK----AFEA-------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI 172 (337)
T ss_dssp ECCCEEEEEETTTTEEEE----EEEC-------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred ccCceEEEEECCCCcEEE----EEeC-------------CCCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence 57999999998775421 1211 1346788999999988887 57899999986 555554443
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEEEecCC-C-----------------------cEEEEecCCCCcceeee
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL 438 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g-----------------------~i~iw~~~~~~~~~~~~ 438 (515)
+.... .+.|+|++++|+..+.+ + .|.+||+.+++.....+
T Consensus 173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 22110 34678888876544432 2 46899999875444445
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEEeC
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYYA 515 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~~~ 515 (515)
..+...+..++++|++++++++ ++.+.+++..... .. ..+.....+.+++|+||+++|++++. +.+.+|+.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cc-ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5666778889999999999888 7888884432111 10 11223456789999999998887764 55888863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=181.08 Aligned_cols=259 Identities=9% Similarity=0.028 Sum_probs=177.0
Q ss_pred ceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
.+|.+++|+ +||+.|++++. ||+++||++.+++...+
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------------------- 59 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKL---------------------------------------- 59 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEEC----------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEee----------------------------------------
Confidence 569999995 56779998876 99999999866543221
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C---CCcEEEEeCCC--C
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI--S 265 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~--~ 265 (515)
...+...+..++|+|| ++++++ . +....+|.+.. .
T Consensus 60 --------------------------------------t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 60 --------------------------------------NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp --------------------------------------CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred --------------------------------------ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 1122246788999999 666665 3 45566765543 2
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.....+ . ....+...+|+|++...+++.+.++.+.+||+.+++.. .+ ..+..
T Consensus 101 g~~~~l--------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-----~l------------~~~~~-- 152 (582)
T 3o4h_A 101 GEEQRL--------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-----EL------------ARLPG-- 152 (582)
T ss_dssp TCCEEC--------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-----EE------------EEESS--
T ss_pred Cccccc--------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-----Ee------------ecCCC--
Confidence 222111 1 12224466888887444555555555669999877531 11 11112
Q ss_pred eEEEEccCCCEEEEEc-C----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC
Q 010206 346 SDIKFARNGRHILSRD-Y----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 420 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~-~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d 420 (515)
.+++|||||++|++++ + ..|++||+.+ ++. ..+..+... +..++|||||++|+++..+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~ 215 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETA 215 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECS
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCC
Confidence 7899999999999643 3 5789999875 443 455555433 3489999999999988888
Q ss_pred C--cEEEEecCCCCcceeeeccCCCceeeEE--------ECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCe
Q 010206 421 N--LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 490 (515)
Q Consensus 421 g--~i~iw~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i 490 (515)
+ .|++||+.++... .+..|...+..++ |+|+|.++++++.|+.++++.-.+ ... .....|
T Consensus 216 ~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~----~~~----~~~~~v 285 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGE----RVE----APQGNH 285 (582)
T ss_dssp SCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTE----EEC----CCSSEE
T ss_pred CeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECC----eec----cCCCce
Confidence 8 8999999987433 6777887888888 999999899999999999933211 111 134678
Q ss_pred eEEEEcCCCCEEEEEcCC
Q 010206 491 LHLAWHPSENSIACAASN 508 (515)
Q Consensus 491 ~~~~~s~~~~~la~~~~~ 508 (515)
.+++|+ +++++++++.+
T Consensus 286 ~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 286 GRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEEEEE-TTEEEEEEEET
T ss_pred EEEEec-CCEEEEEEcCC
Confidence 999999 99988876543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-18 Score=177.50 Aligned_cols=333 Identities=10% Similarity=0.045 Sum_probs=188.2
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
...+++|+|||++|+++ ||.|++||+.+++.. ..+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence 45689999999999987 899999999887632 223444310 0001234
Q ss_pred EEEEeecCCCcEEEeeeCC---------CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
.+.| ++|+++|+.++.+ +.+.+||+.+++...
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------------------------- 106 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------------------------- 106 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------------------------------
Confidence 5788 6678899998876 445577777665221
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCc
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 267 (515)
+..|...+...+|||||+.|+.+.++.|++||+.++..
T Consensus 107 ------------------------------------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 107 ------------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ------------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred ------------------------------------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCce
Confidence 12344568899999999999998889999999986653
Q ss_pred ccceecccC-ccccccC---------CceEEEEEecCCCcEEEEEecCCe-EEE--------------------------
Q 010206 268 SFNIVDVKP-ANMEDLT---------EVITSAEFHPTHCNMLAYSSSKGS-IRL-------------------------- 310 (515)
Q Consensus 268 ~~~~~~~~~-~~~~~~~---------~~i~~i~~~p~~~~~l~~~~~dg~-i~~-------------------------- 310 (515)
..-..+-.. ..+.++. +....+.|+||| +.|+.++.|.. +.+
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 211000000 0111111 112358999999 78887764332 444
Q ss_pred ---------EecCc---ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----C-CeEEEEEeeCC
Q 010206 311 ---------IDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMD 373 (515)
Q Consensus 311 ---------wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~ 373 (515)
||+.+ ++... ...+.. ...+.+|...+..++|+|||+.++... . ..|.+||+.+
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~--~~~l~~------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t- 294 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNAT--SIQITA------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE- 294 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCC--EEEECC------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-
T ss_pred cCCeeEEEEEECCCCCCCCcce--EEEecC------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-
Confidence 44443 31000 000000 000113667799999999999776532 2 5799999986
Q ss_pred CC----C--eeeE--eeeccccccccccccCCCccceeeEEEcCCCCEEE-Eec-CC--CcEEEEecCCCCcceeeeccC
Q 010206 374 SG----P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGS-YS--NLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 374 ~~----~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s-~d--g~i~iw~~~~~~~~~~~~~~~ 441 (515)
++ + +..+ ..+...+.. .....+.|+|||+.|+ ..+ .+ ..|++||+.++. . ..+...
T Consensus 295 g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~-~~lT~g 362 (740)
T 4a5s_A 295 SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-C-TFITKG 362 (740)
T ss_dssp TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-C-EESCCS
T ss_pred CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-e-EecccC
Confidence 54 1 2222 222222110 0012678999999877 665 33 468888887653 3 233333
Q ss_pred CCceeeEEECCCCCe-eEeecC----CC--eEEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 442 KNPMRRQVQTPSRPS-RPLGSL----SG--VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~-l~s~~~----d~--~v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
...+..+.. ++++. +.+++. .+ .+..+ ++.... ..+..........+..++|||++++++...
T Consensus 363 ~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 363 TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 444444432 33554 444443 12 33332 111110 001100011235678999999999888554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-17 Score=155.47 Aligned_cols=206 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecc------cCccccccCCceEEEEEecCCCcEE-EEEecC
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV------KPANMEDLTEVITSAEFHPTHCNML-AYSSSK 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~d 305 (515)
..+..+++ ++++|+++ .++.|.+|++........+... .+.....+...+.+++|+|++ +.+ +++..+
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~ 176 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGT 176 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCC
Confidence 44566777 77777765 6899999999755433221100 000111234457899999999 655 444458
Q ss_pred CeEEEEecCcccc------cccc--cceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCC
Q 010206 306 GSIRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSG 375 (515)
Q Consensus 306 g~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~ 375 (515)
+.|.+|++..... +... ..... ..+......++|+|+|+++++++ ++.|.+||+.. +.
T Consensus 177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~ 244 (361)
T 3scy_A 177 DQIHKFNINPNANADNKEKFLTKGTPEAFK-----------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GM 244 (361)
T ss_dssp TEEEEEEECTTCCTTTCCCCEEEEEEEEEE-----------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TE
T ss_pred CEEEEEEEcCCCCcccccceeeccccccee-----------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-Cc
Confidence 9999999875431 1000 00001 11124567899999999887765 39999999984 43
Q ss_pred Ce--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC--CCcEEEEecC--CCCc-ceeeeccCCCceeeE
Q 010206 376 PV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQ 448 (515)
Q Consensus 376 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~--dg~i~iw~~~--~~~~-~~~~~~~~~~~v~~~ 448 (515)
.. ..+..... .......++|+|||++|+++.. ++.|.+|++. ++.. ....+.. ...+..+
T Consensus 245 ~~~~~~~~~~~~------------~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~ 311 (361)
T 3scy_A 245 LDEIQTVAADTV------------NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNF 311 (361)
T ss_dssp EEEEEEEESCSS------------CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEE
T ss_pred eEEeEEEecCCC------------CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceE
Confidence 21 11111110 0011348999999999876654 5899999996 3321 2233334 5567899
Q ss_pred EECCCCCeeEeec-CCCeEEE
Q 010206 449 VQTPSRPSRPLGS-LSGVVRR 468 (515)
Q Consensus 449 ~~~~~~~~l~s~~-~d~~v~l 468 (515)
+|+|++++|++++ .++.+.+
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEECCCCCEEE
Confidence 9999999888877 5788888
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-18 Score=157.49 Aligned_cols=290 Identities=10% Similarity=0.066 Sum_probs=170.7
Q ss_pred cccceEEEEECCCCCeEEeecCC----CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
+...+..++|+|||++|++++.+ +.|.+|++....- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 67778889999999999998875 7999999875310 011222222222
Q ss_pred cccceeEEEEEeecCCCcEEEeee-CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.....+++ ++++|++++ .++.|.+|++........... .....+..
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-----------------------~~~~~g~~--- 146 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD-----------------------VIEFKGSG--- 146 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-----------------------EEECCCCC---
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce-----------------------eEEccCCC---
Confidence 34566666 456777765 688999999975321110000 00000000
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 266 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 266 (515)
.. . ...+...+.+++|+|++++|+++ .++.|.+|++....
T Consensus 147 ------------------------------~~----~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 147 ------------------------------PD----K----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp ------------------------------SC----T----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred ------------------------------CC----c----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 00 0 01233457899999999977665 58999999987544
Q ss_pred c----c-cceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 267 Q----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 267 ~----~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
. . .............+...+..++|+|++ +++++++ .++.|.+||+.++.... ...+.. ...
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~ 256 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTV 256 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSS
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCC
Confidence 2 1 100000000112234567899999999 7666666 68999999998664311 111110 111
Q ss_pred cccceeEEEEccCCCEEEEEc---CCeEEEEEeeCC-CC--CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 341 IIASISDIKFARNGRHILSRD---YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~---~~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
+......++|+|||++|+++. ++.|.+|++... ++ .+..+.. ... +..++|+|||++|
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l 320 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYL 320 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEE
Confidence 223467999999999887643 379999999632 22 1222221 111 2389999999988
Q ss_pred EEec-CCCcEEEEecC--CCCcceeee-ccCCCceeeEEEC
Q 010206 415 ATGS-YSNLFRVFGCS--EGSAESTTL-EASKNPMRRQVQT 451 (515)
Q Consensus 415 ~s~s-~dg~i~iw~~~--~~~~~~~~~-~~~~~~v~~~~~~ 451 (515)
++++ .++.|.+|++. ++ .+.... ..+...+.++.|.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g-~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATG-LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEETTTTEEEEEEECTTTC-CEEECSCCEECSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCC-cEeecceeeeCCCCeEEEEc
Confidence 8776 67899996554 44 222111 2233445566553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-18 Score=162.00 Aligned_cols=231 Identities=10% Similarity=0.108 Sum_probs=144.6
Q ss_pred cccccceEEEEECCCCCeEE----eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~la----sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+....... ..........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~------------~~~~~~~~~~~~~h~------- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ------------QKRPFAYHKLLKDAG------- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS------------SCCCSEEEECCCSGG-------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC------------CcceeeeeeccCCCC-------
Confidence 45667899999999999999 8899999999998764110000 000011224456676
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 -----~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------------ 187 (434)
T 2oit_A 150 -----GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA------------------------------------ 187 (434)
T ss_dssp -----GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE------------------------------------
T ss_pred -----CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee------------------------------------
Confidence 88999999764 256899999999999999987632110
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
..+|...|.+++|+|++++|++| .|+.|++||++ ++
T Consensus 188 ------------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 188 ------------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp ------------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred ------------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence 13567889999999999999998 89999999998 33
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEE-EecCC------eEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.... +.........|...|.+++|++++ .++++ +..+| .+++|+++...... ...+.....+ ...+.
T Consensus 225 ~~~~-~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~--~~~~~ 298 (434)
T 2oit_A 225 EKKV-IPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEP--CYGSC 298 (434)
T ss_dssp EEEE-ECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCS--SCCCC
T ss_pred cccc-ccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccC--CCCCC
Confidence 2211 111100111244589999999987 55543 33443 38999998653210 0111111110 00001
Q ss_pred ccccceeEEEEccCCCEEEEEcC--CeEEEEEeeC
Q 010206 340 EIIASISDIKFARNGRHILSRDY--MTLKLWDINM 372 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~ 372 (515)
+...+-..+..-++.+++++++. +.|.|.....
T Consensus 299 ~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 299 TERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp SSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred CCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 11223333444467777777543 6777777553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=169.48 Aligned_cols=230 Identities=9% Similarity=-0.006 Sum_probs=151.3
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
....++.+++++++.++++|+.++ ++||+......... ..... ..... +.....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----~~~~~---------~~~~~-------~~~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----PGDDP---------NKIVD-------KVQGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----TTCCT---------TCEEE-------CCCCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----cccCc---------ccccc-------cCccccccCCC
Confidence 345689999999999999999888 99998653221000 00000 00000 00011122336
Q ss_pred eeEEEEEeecCCCcEEE----eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
.|++++| ++++++|+ +++.|++|++||+.+...... . . .+.
T Consensus 94 ~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~--~------------------------~~~---- 138 (434)
T 2oit_A 94 PIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---Q--Q------------------------KRP---- 138 (434)
T ss_dssp CEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---S--S------------------------CCC----
T ss_pred cccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---C--C------------------------cce----
Confidence 7999999 45677898 788999999999976410000 0 0 000
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCCcEEEEeCCCCCc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 267 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 267 (515)
+ .. ...+.+|...|.+++|+|+ +.+|+++ .|++|++||+++...
T Consensus 139 -----------------~----------------~~-~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 139 -----------------F----------------AY-HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp -----------------S----------------EE-EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred -----------------e----------------ee-eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 0 00 0113578899999999998 8889988 899999999987643
Q ss_pred ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeE
Q 010206 268 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 347 (515)
.. ...+|...|.+++|+|++ ++|++|+.||.|++||++ ++.. ..+..+. .....|...+.+
T Consensus 185 ~~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~-----~~~~~~~~~v~~ 245 (434)
T 2oit_A 185 VC--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP-----FYESDHPVRVLD 245 (434)
T ss_dssp EE--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCT-----TCCTTSCEEEEE
T ss_pred ee--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCc-----ccCCCCceeEEE
Confidence 22 334578899999999998 899999999999999998 3221 1111111 001134457999
Q ss_pred EEEccCCCEEEEEc--C------CeEEEEEeeC
Q 010206 348 IKFARNGRHILSRD--Y------MTLKLWDINM 372 (515)
Q Consensus 348 ~~~s~~~~~l~s~~--~------~~i~iwd~~~ 372 (515)
++|++++.++++.+ + ..+++|++.+
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 99999988886532 2 2499999985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=160.91 Aligned_cols=292 Identities=9% Similarity=0.018 Sum_probs=174.4
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
.+++++++.++++++.++.|.+||..+++.. ..+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------KSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEE-----------------------EEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEE-----------------------EEEecCC-----------CCCCceeE
Confidence 4578899999999999999999999876532 2222211 01467889
Q ss_pred EeecCCCcEEE-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 120 ~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
| ++++++++ +...++.|.+||+.+++..........+.. ....+..++++|||+.+
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg~~l------------ 106 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE---------VGRSMYSFAISPDGKEV------------ 106 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE---------EEECSSCEEECTTSSEE------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc---------ccccccceEECCCCCEE------------
Confidence 9 45666555 455789999999999886655443211000 00011278999999988
Q ss_pred CCCCCc------------ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCC
Q 010206 199 FPPGGV------------SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 266 (515)
Q Consensus 199 ~~~~~~------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 266 (515)
++++.+ +.|.+|| +...+. ...... ..+...+.+++|+|+++ ++++ ++.|.+||+.+++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d--~~~~~~---~~~~~~--~~~~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~~~ 177 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFS--TADGLE---AKPVRT--FPMPRQVYLMRAADDGS-LYVA-GPDIYKMDVKTGK 177 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEE--GGGGGG---BCCSEE--EECCSSCCCEEECTTSC-EEEE-SSSEEEECTTTCC
T ss_pred EEEcccccccccccccCCCeEEEEE--CCCccc---cceeee--ccCCCcccceeECCCCc-EEEc-cCcEEEEeCCCCc
Confidence 655544 8999999 443211 111111 12334688999999999 4444 2239999998765
Q ss_pred cccceecccCcccc-------------ccC----CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 267 QSFNIVDVKPANME-------------DLT----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 267 ~~~~~~~~~~~~~~-------------~~~----~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
....+ ........ ... .....+++++++............+..+|..+++.. .+..
T Consensus 178 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 250 (349)
T 1jmx_B 178 YTVAL-PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH-----TQEF- 250 (349)
T ss_dssp EEEEE-CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE-----EEEE-
T ss_pred eeccc-cccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE-----eccc-
Confidence 43221 11000000 000 034456666554111000001111222444443321 1111
Q ss_pred cCCCccccccccccceeEEEEcc-CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 330 EAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
..+...+..++|+| ++++++++ ++.|.+||+.+ ++.+..+..... +..++|+
T Consensus 251 ---------~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s 303 (349)
T 1jmx_B 251 ---------ADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHT----------------YYCVAFD 303 (349)
T ss_dssp ---------EECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEEC
T ss_pred ---------ccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEcCCCC----------------ccceEEC
Confidence 11224578999999 99999988 78999999986 665555543221 2389999
Q ss_pred CCCCEEEEecCCCcEEEEecCCC
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
|+|++|++++.++.|++||++++
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTT
T ss_pred CCCCEEEEecCCCeEEEEecccc
Confidence 99999888888999999999876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-17 Score=152.35 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=161.7
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+..++| ++++++|++++.+ .|.+|++. +++......... .+... .++++|||+.+.+
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-------~g~~~-------~~~~spdg~~l~~--- 99 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-------GGHPR-------ANDADTNTRAIFL--- 99 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-------CSSGG-------GGCTTSCCEEEEE---
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-------CCCCc-------cEEECCCCCEEEE---
Confidence 35788999 5677789888887 99999997 776544332210 01111 6789999994211
Q ss_pred cCCCCCCCCCC-------------CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCc
Q 010206 192 CASNDSSFPPG-------------GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR 256 (515)
Q Consensus 192 ~~~~~~~~~~~-------------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~ 256 (515)
+++. .++.+.+|+ +... +... .....+...+...+.+++|+|+|++|+++ .++.
T Consensus 100 -------~~~~~~~~~~~~~~~~~~~g~v~v~~--~~~~-g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 100 -------LAAKQPPYAVYANPFYKFAGYGNVFS--VSET-GKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp -------EECSSTTCCEEEEEESSSCCEEEEEE--ECTT-CCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -------EEecCCcceeccceeecCCceEEEEc--cCCC-CcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 3332 578899999 4321 1111 11111111345678999999999988876 4789
Q ss_pred EEEEeCC-CCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeEEEEecC--cccccccccceeeeccCC
Q 010206 257 INLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 257 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~~ 332 (515)
|++||+. +++.. .+... ....|...+..++|+|++ +++++++. ++.|.+|++. +++.... ...+.. .+
T Consensus 169 v~~~~~~~~g~~~-~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~--~~ 240 (365)
T 1jof_A 169 LWTHRKLASGEVE-LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPL--IP 240 (365)
T ss_dssp EEEEEECTTSCEE-EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEES--SC
T ss_pred EEEEEECCCCCEE-EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEc--CC
Confidence 9999997 44321 11000 111235668999999999 77776664 7899999875 3432100 000110 00
Q ss_pred Ccccccccccc------ceeEEE-EccCCCEEEEEcC--C-----eEEEEEeeCCCCCeee---Eeeecccccccccccc
Q 010206 333 GTRSFFTEIIA------SISDIK-FARNGRHILSRDY--M-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDLYE 395 (515)
Q Consensus 333 ~~~~~~~~~~~------~i~~~~-~s~~~~~l~s~~~--~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~ 395 (515)
. -+.+|.. .+..++ |+|||++|++++. + .|.+|++...++.... ...+...
T Consensus 241 ~---~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--------- 308 (365)
T 1jof_A 241 P---GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--------- 308 (365)
T ss_dssp T---TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---------
T ss_pred C---CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---------
Confidence 0 0112222 578999 9999999887542 3 8999999732443321 1111111
Q ss_pred CCCccceeeEEEcC---CCCEEEEecC-CCcEEEEecCCC
Q 010206 396 NDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 431 (515)
Q Consensus 396 ~~~~~~v~~~~~s~---~~~~l~s~s~-dg~i~iw~~~~~ 431 (515)
...++|+| ||++|++++. ++.|.+|++...
T Consensus 309 ------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 ------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 12789999 8999998876 489999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-18 Score=160.34 Aligned_cols=292 Identities=10% Similarity=0.062 Sum_probs=168.4
Q ss_pred EEECCCCCeEEeecC-CC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 41 IEFDKSGDHLATGDR-GG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 41 v~~s~~g~~lasg~~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
.+|||||++||.++. +| .|.+||+.+++.. ....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------------~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------------QLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------------ECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------------EeeeCCC------------CCccc
Confidence 889999999998876 66 4888888766532 2223333 33446
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.| +++++.|+.++.++.|++||+.+++...+....... +. .....++|+|+.+
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~--------~~-----~~~~~~~~dg~~l----------- 139 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW--------VG-----YGTWVANSDCTKL----------- 139 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE--------EE-----EEEEEECTTSSEE-----------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc--------cc-----ccceeECCCCCee-----------
Confidence 678 567889999999999999999998765544322100 00 0001123344332
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE-----EEEe-CCCcEEEEeCCCCCcccce
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-----FISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+. +.. ...+ +.+.... +... .+..|.+||+.+++..
T Consensus 140 -~~--------~~~---~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--- 181 (388)
T 3pe7_A 140 -VG--------IEI---RRED-----------------------WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--- 181 (388)
T ss_dssp -EE--------EEE---EGGG-----------------------CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---
T ss_pred -cc--------ccc---cCcc-----------------------cccccccchhhhhhccCCcceEEEEECCCCceE---
Confidence 00 000 0000 0000000 0011 3467899999876432
Q ss_pred ecccCccccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEecCcccccccccceeeeccCCCccccccccc--
Q 010206 272 VDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-- 342 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 342 (515)
.+..+...+..++|+| ++ +.|+....+ ..|.++|+..+... . +..+.
T Consensus 182 ------~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~------------l~~~~~~ 237 (388)
T 3pe7_A 182 ------VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR-----K------------VKTHAEG 237 (388)
T ss_dssp ------EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE-----E------------SCCCCTT
T ss_pred ------EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE-----E------------eeeCCCC
Confidence 2334566789999999 98 777776653 36777777654321 1 11111
Q ss_pred cceeEEEEccCCCEEEEEc--C-C---eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEE
Q 010206 343 ASISDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 416 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~--~-~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 416 (515)
..+..+.|+|||+.|+..+ . + .|.+||+.+ ++.. .+........ .. ......+|+|||+.|+.
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~~~~-~~--------~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENR-QLTSMPACSH-LM--------SNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEE-EEEEECCEEE-EE--------ECTTSSEEEEEECCC--
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceE-EEEcCCCcee-ee--------ecCCCCeEccCCCccee
Confidence 2477889999999776532 1 2 399999985 4422 2211111000 00 00013579999998875
Q ss_pred e---------cCCCcEEEEecCCCCcceeeeccCCC-----------ceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 417 G---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 417 ~---------s~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
. ..+..|++||+.++. . ..+..+.. .+..++|+|+|+.|+..+. ++...|
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNGT-Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp ----------CCCCEEEEEETTTTE-E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred EeeeccccccCCCCEEEEEeccCCc-e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence 3 456789999998763 2 34555544 5778899999998876653 554444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-17 Score=151.36 Aligned_cols=250 Identities=8% Similarity=0.060 Sum_probs=143.0
Q ss_pred CeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCcccccc----CCceEEEEEecCCCcEEEEEecC----
Q 010206 236 HINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK---- 305 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~p~~~~~l~~~~~d---- 305 (515)
.+..++|+|+++.++. + .++.|.+||+.+++....+ ..... ...+..++|+|++ +.+++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEccccccc
Confidence 3567899999986654 4 6899999999876543221 11100 2236789999999 788887765
Q ss_pred --------CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCe
Q 010206 306 --------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV 377 (515)
Q Consensus 306 --------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~ 377 (515)
+.|.+||+.+++.... ...+. +...+.+++|+|+|+ +++++ +.|.+||+.+ ++..
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~-------------~~~~~~~~~~s~dg~-l~~~~-~~i~~~d~~~-~~~~ 179 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKP-VRTFP-------------MPRQVYLMRAADDGS-LYVAG-PDIYKMDVKT-GKYT 179 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCC-SEEEE-------------CCSSCCCEEECTTSC-EEEES-SSEEEECTTT-CCEE
T ss_pred ccccccCCCeEEEEECCCccccce-eeecc-------------CCCcccceeECCCCc-EEEcc-CcEEEEeCCC-Ccee
Confidence 8999999988653211 11221 113578899999999 55543 3599999986 6665
Q ss_pred eeEeeeccccccc-----cccccCC----CccceeeEEEcCCCCEEEEecCCC-cEEEEecCCCCcceeeeccCCCceee
Q 010206 378 ATFQVHEHLRPKL-----CDLYEND----SIFDKFECCLSGDGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRR 447 (515)
Q Consensus 378 ~~~~~~~~~~~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~~~~~v~~ 447 (515)
..+..+....... ....... .......+++++++.......... .+..++..++......+..+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
T 1jmx_B 180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 259 (349)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence 5554322000000 0000000 000122466666543221111111 12224555443322333345567789
Q ss_pred EEECC-CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEeC
Q 010206 448 QVQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 515 (515)
Q Consensus 448 ~~~~~-~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~~ 515 (515)
++++| ++++++++ ++.|.+++..... .. ..+.....+.+++|+||+++|++++ ++.+.+|+.
T Consensus 260 ~~~sp~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 260 GLRSPKDPNQIYGV--LNRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEECSSCTTEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred eEecCCCCCEEEEE--cCeEEEEECccCe---EE-EEEcCCCCccceEECCCCCEEEEecCCCeEEEEec
Confidence 99999 99999888 7888884322111 10 1112245678999999999888765 455888863
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=167.77 Aligned_cols=282 Identities=8% Similarity=-0.008 Sum_probs=169.6
Q ss_pred ceEEEEECCCCCeEEeecC---------CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.|.+++|||||++||+++. ++.|++||+.+++.... ..+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eec---C-------
Confidence 3899999999999998876 68999999987763100 001 0
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..+..++| ++||+.|+.+. |+.|++|++.+++...+..... . ..+
T Consensus 110 -----~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~------~~v-------------------- 154 (719)
T 1z68_A 110 -----RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-E------NKI-------------------- 154 (719)
T ss_dssp -----SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB-T------TTE--------------------
T ss_pred -----cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC-c------CCe--------------------
Confidence 34788999 56788888875 7899999998876543321100 0 000
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc---------CCeEEEEecCCCCEEEEe-CC---
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD---------YHINSISNNSDGETFISA-DD--- 254 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~-~d--- 254 (515)
..++. ....+++|+|||+.|+++ .|
T Consensus 155 ------------------------------------------~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~ 192 (719)
T 1z68_A 155 ------------------------------------------FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD 192 (719)
T ss_dssp ------------------------------------------EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred ------------------------------------------EcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence 00111 112355666666666654 22
Q ss_pred -------------------------------CcEEEEeCCCCCcc--cceecccCccccccCCceEEEEEecCCCcEEEE
Q 010206 255 -------------------------------LRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 301 (515)
Q Consensus 255 -------------------------------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~ 301 (515)
..|++||+.+++.. ..+ ..+..+.+|...+.+++|+||+ +++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SpD~-~~~~~ 269 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV--PVPAMIASSDYYFSWLTWVTDE-RVCLQ 269 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--CCCHHHHTSCEEEEEEEESSSS-EEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--cCCccCCCCcceEEEeEEeCCC-eEEEE
Confidence 27889999865431 111 0112345678889999999997 77776
Q ss_pred EecC----CeEEEEe----cCcccccccccceeeeccCCCcccccccccccee-----EEEEccCCCEEEE--Ec-CC--
Q 010206 302 SSSK----GSIRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-YM-- 363 (515)
Q Consensus 302 ~~~d----g~i~~wd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~~~~l~s--~~-~~-- 363 (515)
.... ..|.+|| +.+++... .+.. ...+|...+. .+.|+|||+.++. .. ++
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTWDCPK----TQEH--------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSEECCG----GGEE--------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred EeccccCeEEEEEEcccCCCCCCceEE----EEec--------ccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 5433 2488899 77665321 1100 0012334454 7899999996654 32 23
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-----CCcEEEEecCC--CCccee
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSE--GSAEST 436 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----dg~i~iw~~~~--~~~~~~ 436 (515)
.|.+||+.. ++ ...+..+... +..+.++ +++.|+..+. ++..++|.+.. +.....
T Consensus 338 ~l~~~~~~~-~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 399 (719)
T 1z68_A 338 HIHYIKDTV-EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK 399 (719)
T ss_dssp EEEEESSCS-TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred EEEEEECCC-Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence 566677653 33 3344322211 3356666 7777765554 47888998764 211112
Q ss_pred ee----ccCCCceeeEEECCCCCeeEe
Q 010206 437 TL----EASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 437 ~~----~~~~~~v~~~~~~~~~~~l~s 459 (515)
.+ .+|...+..+.|+|++++++.
T Consensus 400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 400 CVTCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp ESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred eccCccCCCCCceEEEEECCCCCEEEE
Confidence 22 235567778999999987764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=160.97 Aligned_cols=205 Identities=9% Similarity=-0.004 Sum_probs=127.9
Q ss_pred CcCCeEEEEecCCCCEEEEe-CC----------CcEEEEeCCCC-----CcccceecccCcccc-ccCCceEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 295 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~i~~~p~~ 295 (515)
|...+.+++|+|||+.|+++ .+ ..|++||+.+. .... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 44567889999999999887 44 58999999862 2221 233 455678889999999
Q ss_pred CcEEEEEecC--------CeEEEEecC-cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C--
Q 010206 296 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-- 363 (515)
Q Consensus 296 ~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-- 363 (515)
+.|+.++.+ ..|.+||+. ++... . ... +..+|...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~-----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRT-----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEE-----------EEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEE-----------eCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 888877755 379999998 45210 0 011 12223467899999999997777654 6
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCC
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
.|.+||+.. ++.......+.... ...-..++..++|+|+++++++++. +.++||.+.........+..+..
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~~~ 336 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGPWT 336 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSSCC
T ss_pred EEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCCCC
Confidence 555555543 33322222111110 0000011347899999999999998 99999944322223466777777
Q ss_pred ceeeE-EECCCCCeeEeecCCCeEEE
Q 010206 444 PMRRQ-VQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~-~~~~~~~~l~s~~~d~~v~l 468 (515)
.+..+ .+.++.-++++++.+....+
T Consensus 337 ~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 337 EWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred eEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 77766 55444444555566654444
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-16 Score=159.23 Aligned_cols=213 Identities=11% Similarity=0.055 Sum_probs=124.0
Q ss_pred EEEEecCCCCEEEEe-CC---------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 238 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
.+++|||||+.|+.+ .+ +.+.+||+.+++.. .+..+...+..++||||| +.|+.+ .++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence 457889999998887 43 66789999876532 345567789999999999 788877 5789
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccc---------cceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCC
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGP 376 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~ 376 (515)
|++||+.++.... .+..+.. ...+.++. +....+.|||||+.|+..+ + +.+.+|++......
T Consensus 134 i~~~~~~~~~~~~---lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 134 IYVKIEPNLPSYR---ITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp EEEESSTTSCCEE---CCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred EEEEECCCCceEE---EcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 9999998775321 0111110 01122222 2234589999999999863 2 54555554210000
Q ss_pred -----------------------eeeEeeec---cccccccccccC----CCccceeeEEEcCCCCEEEEec----CCCc
Q 010206 377 -----------------------VATFQVHE---HLRPKLCDLYEN----DSIFDKFECCLSGDGGRVATGS----YSNL 422 (515)
Q Consensus 377 -----------------------~~~~~~~~---~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~s----~dg~ 422 (515)
+..+.... ........+... ..-.-+..++|+|||+.++... .+..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~ 286 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE
Confidence 00000000 000000000000 0111256899999999766543 3447
Q ss_pred EEEEecCCCC----cc-eeee--ccCCCcee-----eEEECCCCCeeE-eec-CCCeEEE
Q 010206 423 FRVFGCSEGS----AE-STTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR 468 (515)
Q Consensus 423 i~iw~~~~~~----~~-~~~~--~~~~~~v~-----~~~~~~~~~~l~-s~~-~d~~v~l 468 (515)
|++||+.+++ +. ...+ +.|...+. ...|+|||+.++ ..+ .+|.-.|
T Consensus 287 i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 287 MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 9999999875 22 1222 45555444 788999999876 554 4554443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-17 Score=153.46 Aligned_cols=292 Identities=10% Similarity=0.059 Sum_probs=182.3
Q ss_pred cccceEEEEECCCCCeEEeecCC---CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
|...+.+++|||||++||..... ..|.+|++.+++.. .+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~------------------------~l~~~~~--------- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV------------------------QLTEGKG--------- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE------------------------ECCCSSC---------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE------------------------EeecCCC---------
Confidence 33447889999999998876432 36888888766531 1111110
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
.....+.| ++++++|+.++.++.|.+||+.+++...+.... ..++++|+.+
T Consensus 81 --~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~---------------------~~~~~~g~~l---- 131 (396)
T 3c5m_A 81 --DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVD---------------------EEWKGYGTWV---- 131 (396)
T ss_dssp --BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECC---------------------TTEEEEEEEE----
T ss_pred --CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc---------------------cccCCCCCEE----
Confidence 11233678 567889999999999999999988766554422 1255666655
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe------CCCcEEEEeCCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEI 264 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~ 264 (515)
+....+....+|. ..+.|+|+++.++.. .+..|.+||+.+
T Consensus 132 --------~~~~~~~~~~~~~--------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 132 --------ANSDCTKLVGIEI--------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp --------ECTTSSEEEEEEE--------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred --------EeccCCccccccc--------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 4333333333222 123577888877642 356899999986
Q ss_pred CCcccceecccCccccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEecCcccccccccceeeeccCCCcccc
Q 010206 265 SNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
++.. .+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+... .+.
T Consensus 178 g~~~---------~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~---------- 232 (396)
T 3c5m_A 178 GELE---------VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-----KIK---------- 232 (396)
T ss_dssp CCEE---------EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-----ESS----------
T ss_pred CcEE---------eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-----Eee----------
Confidence 5532 2223566789999999 67 666665543 35888887654321 000
Q ss_pred cccc-ccceeEEEEccCCCEEEEEc-C-----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC-
Q 010206 338 FTEI-IASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG- 409 (515)
Q Consensus 338 ~~~~-~~~i~~~~~s~~~~~l~s~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 409 (515)
... ...+..+.|+|+|++|+..+ + +.|++||+.+ ++.. .+..... . .+.|+|
T Consensus 233 -~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~-~l~~~~~----------------~-~~~~s~~ 292 (396)
T 3c5m_A 233 -EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENE-EVMVMPP----------------C-SHLMSNF 292 (396)
T ss_dssp -CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEE-EEEECCS----------------E-EEEEECS
T ss_pred -ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeE-EeeeCCC----------------C-CCCccCC
Confidence 100 13478899999999877642 2 3499999875 4332 2221111 1 378999
Q ss_pred CCCEEEEec----------------CCCcEEEEecCCCCcceeeeccCCC-----------ceeeEEECCCCCeeEeecC
Q 010206 410 DGGRVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 410 ~~~~l~s~s----------------~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~~~ 462 (515)
||++|++++ .++.|++||+.++.. ..+..+.. .+..+.|+|+++.|+..+.
T Consensus 293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 999888754 347899999987632 34444443 2566889999998877654
Q ss_pred -CCeEEE
Q 010206 463 -SGVVRR 468 (515)
Q Consensus 463 -d~~v~l 468 (515)
++...+
T Consensus 371 ~~~~~~l 377 (396)
T 3c5m_A 371 FEGVPAI 377 (396)
T ss_dssp TTSSCEE
T ss_pred CCCCceE
Confidence 444444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-15 Score=139.04 Aligned_cols=280 Identities=9% Similarity=0.014 Sum_probs=166.7
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.++| ++++++++++. .+++|.+||..+.+............ . . ...+..++++|||+.+
T Consensus 54 ~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~--~-~------g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV--Q-G------LNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC--C-B------CCCGGGEEECTTSSEE
T ss_pred ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc--c-c------CCCcceEEECCCCCEE
Confidence 7888 56788888876 36789999999887665544321000 0 0 0112278999999998
Q ss_pred ccccccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeC
Q 010206 187 ERNFGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 262 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 262 (515)
+++. .++.|.+|| +...+ .....+ .. .....+.+.|++ ..+++. .||.+.+|+.
T Consensus 123 ------------~v~n~~~~~~v~v~d--~~~~~------~~~~~i-~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 123 ------------VLQNASPATSIGIVD--VAKGD------YVEDVT-AA-AGCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp ------------EEEEESSSEEEEEEE--TTTTE------EEEEEG-GG-TTEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ------------EEECCCCCCeEEEEE--CCCCc------EEEEEe-cC-CCcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 6554 368999999 33221 111100 11 112234566765 455554 7889999988
Q ss_pred CCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 263 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
............ ...+.....+ ..+.++|++ ..++..+.++.+.++|+....... ...+...... ........
T Consensus 181 ~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~--~~~~~~~p 253 (361)
T 2oiz_A 181 GEDGKVASQSRS-KQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE--DKAKNWVP 253 (361)
T ss_dssp CTTSSEEEEEEC-CCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH--HHHTTCEE
T ss_pred CCCCcEeeeccc-cceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc--cccccccc
Confidence 653322211000 0011112222 133346777 566777788999999987543210 1111100000 00000000
Q ss_pred cceeEEEEccCCCEEEEE-c-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 343 ASISDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~-~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.....++|+|+++.++++ . .+.|.+||+.+ .+.+.++..+. . ..++|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p----------------~~ia~spd 315 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-A----------------LSMTIDQQ 315 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-C----------------CEEEEETT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-e----------------eEEEECCC
Confidence 122237899998877764 2 14899999987 77788877655 2 28999999
Q ss_pred CCEEEEecCCCcEEEEecCCCC-cceeeeccCCCceeeEEECCCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGS-AESTTLEASKNPMRRQVQTPSRP 455 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 455 (515)
|++|++++. +.|.+||..++. +++..+..+......++++|+|+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999998887 999999999862 23355556667778899999975
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=149.73 Aligned_cols=222 Identities=8% Similarity=0.042 Sum_probs=133.8
Q ss_pred EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEE--EEecCCCcEEEEE------------
Q 010206 238 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS------------ 302 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~~p~~~~~l~~~------------ 302 (515)
..+.|+||++.|+.+ .++.|++||+.+++... + ...+...+... .++|++ .+++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCS
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCcccccccc
Confidence 345799999999988 78899999998765432 1 12233434333 348888 666632
Q ss_pred ----------ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-------Ce
Q 010206 303 ----------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MT 364 (515)
Q Consensus 303 ----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-------~~ 364 (515)
..+..|.+||+.+++.. . +..+...+..+.|+| ||+.|+.... ..
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGEST-----V------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCCEE-----E------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred cchhhhhhccCCcceEEEEECCCCceE-----E------------eecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 23467999999887531 1 122335688999999 9998886542 25
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-C----CcEEEEecCCCCcce-eee
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-S----NLFRVFGCSEGSAES-TTL 438 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-d----g~i~iw~~~~~~~~~-~~~ 438 (515)
|.++|.. +.....+..+... ..+..++|+|||+.|+..+. + ..|++||+.+++... ..+
T Consensus 218 l~~~d~~--~~~~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~ 282 (388)
T 3pe7_A 218 MWLINED--GTNMRKVKTHAEG-------------ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSM 282 (388)
T ss_dssp EEEEETT--SCCCEESCCCCTT-------------EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCC--CCceEEeeeCCCC-------------cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcC
Confidence 6666665 3333333322210 01346899999998765443 2 239999999875322 223
Q ss_pred ccCCC---ceeeEEECCCCCeeEee---------cCCCeEEEec--CCCCCccccCCccccccC-----------CeeEE
Q 010206 439 EASKN---PMRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLHL 493 (515)
Q Consensus 439 ~~~~~---~v~~~~~~~~~~~l~s~---------~~d~~v~l~~--~~~~~~~~~~~~~~~~~~-----------~i~~~ 493 (515)
.++.. ......|+|+|+.|+.. ..+..|.+++ +.+.. ....+.. .+.++
T Consensus 283 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~ 356 (388)
T 3pe7_A 283 PACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH------RVARHDTSWKVFEGDRQVTHPHP 356 (388)
T ss_dssp CCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE------EEEECCCCCCCBTTBSSTTCCCC
T ss_pred CCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE------EeccccCcccccccccccCCCCc
Confidence 32110 12234789999988754 4455777732 22211 1111222 47889
Q ss_pred EEcCCCCEEEEEc
Q 010206 494 AWHPSENSIACAA 506 (515)
Q Consensus 494 ~~s~~~~~la~~~ 506 (515)
+|+|||++|++++
T Consensus 357 ~~spDg~~l~~~s 369 (388)
T 3pe7_A 357 SFTPDDKQILFTS 369 (388)
T ss_dssp EECTTSSEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 9999999999766
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-14 Score=131.25 Aligned_cols=268 Identities=10% Similarity=0.161 Sum_probs=172.6
Q ss_pred ccccchhhhhcccccccccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceee
Q 010206 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (515)
Q Consensus 14 ~~~w~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (515)
+..|.+...|+... ...++-..+.+++++++|+++++...++.|.+|+....... .+. ..
T Consensus 10 ~~~~~~~~~~g~~g--~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~-----~~~-------------~~ 69 (286)
T 1q7f_A 10 RQRMIYHCKFGEFG--VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-----QFG-------------EC 69 (286)
T ss_dssp CEEECEEEEECCBS--SSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-----EEC-------------CB
T ss_pred cceeEEEEeccCCC--CCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEE-----Eec-------------cc
Confidence 33455555566443 34567788999999999998888888999999997632210 000 00
Q ss_pred eecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
....++. ..+..+++.+ +++.++++... ++.|.+||. +++......
T Consensus 70 ~~~~~~~------------~~p~~i~~~~-~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~------------------- 116 (286)
T 1q7f_A 70 GKRDSQL------------LYPNRVAVVR-NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG------------------- 116 (286)
T ss_dssp SSSTTCB------------SSEEEEEEET-TTTEEEEEECGGGCEEEEECT-TSCEEEEEC-------------------
T ss_pred CCCcccc------------cCceEEEEEc-CCCeEEEEcCCCCCEEEEECC-CCcEEEEec-------------------
Confidence 0001122 4578888842 34444444433 789999983 443222110
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
..+...+.+++++++++++++.
T Consensus 117 ----------------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~ 138 (286)
T 1q7f_A 117 ----------------------------------------------------------ATILQHPRGVTVDNKGRIIVVE 138 (286)
T ss_dssp ----------------------------------------------------------TTTCSCEEEEEECTTSCEEEEE
T ss_pred ----------------------------------------------------------CccCCCceEEEEeCCCCEEEEE
Confidence 1122456889999999988887
Q ss_pred -CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
.++.|.+||.. ++.... + ....+...+..++++|++ +++++...++.|++||.... .. ..+..
T Consensus 139 ~~~~~i~~~~~~-g~~~~~-~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~--- 202 (286)
T 1q7f_A 139 CKVMRVIIFDQN-GNVLHK-F-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQ-YL----RQIGG--- 202 (286)
T ss_dssp TTTTEEEEECTT-SCEEEE-E-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCC-EE----EEESC---
T ss_pred CCCCEEEEEcCC-CCEEEE-e-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCC-EE----EEEcc---
Confidence 68999999965 322211 1 111344568999999998 78887778999999997432 21 11211
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-C-eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.++...+..++++++|+++++... + .|.+||.. ++.+..+..+.... ....++++|
T Consensus 203 -------~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~~~~i~~~~ 260 (286)
T 1q7f_A 203 -------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------QCFDVALMD 260 (286)
T ss_dssp -------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------CEEEEEEET
T ss_pred -------CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------cceeEEECC
Confidence 111245789999999998888754 5 99999954 66666665543211 134799999
Q ss_pred CCCEEEEecCCCcEEEEecCCC
Q 010206 410 DGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|+++++ +.|++|++|++...
T Consensus 261 ~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCcEEEE-CCCCeEEEEEcccc
Confidence 9987777 56899999998653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=144.82 Aligned_cols=260 Identities=10% Similarity=0.010 Sum_probs=155.4
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcc-cCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
....+..++|+|||++|++++.+ .|.+|++. +++.. .......+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~------------- 82 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG------------- 82 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------
Confidence 33468899999999999998887 89999986 54421 00011101
Q ss_pred ceeEEEEEeecCCCcE--EEeee-------------CCCeEEEEEcc-CCeeEEEeeccCCcccCCCCCCccCCCCcCCC
Q 010206 113 EKINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~--l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (515)
+.+..++| ++++++ ++++. .++++.+|++. +++........... ....+ ..
T Consensus 83 g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~~~-------~~ 149 (365)
T 1jof_A 83 GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENTGI-------HG 149 (365)
T ss_dssp SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTCCE-------EE
T ss_pred CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCCcc-------eE
Confidence 11333566 556764 44443 68999999997 45544322210000 01112 27
Q ss_pred ceeecCCCccccccccCCCCCCCCCC-CcccEEeeeeeecccccccccceeeeee-ccCcCCeEEEEecCCCCEEEEe--
Q 010206 177 KSYMANGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-- 252 (515)
Q Consensus 177 ~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~-- 252 (515)
++|+|||+.+ ++++ .++.|.+|+ +.. .+.. ....... ..|...+..++|+|++++|+++
T Consensus 150 ~~~spdG~~l------------~~~~~~~~~v~~~~--~~~-~g~~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~ 212 (365)
T 1jof_A 150 MVFDPTETYL------------YSADLTANKLWTHR--KLA-SGEV--ELVGSVDAPDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp EEECTTSSEE------------EEEETTTTEEEEEE--ECT-TSCE--EEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEE------------EEEcCCCCEEEEEE--ECC-CCCE--EEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence 8999999977 4433 457899999 431 1111 1111111 1245678999999999998876
Q ss_pred CCCcEEEEeCCC--CCccc--ceecccCccccccCC------ceEEEE-EecCCCcEEEEEecC-C-----eEEEEecC-
Q 010206 253 DDLRINLWNLEI--SNQSF--NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR- 314 (515)
Q Consensus 253 ~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~------~i~~i~-~~p~~~~~l~~~~~d-g-----~i~~wd~~- 314 (515)
.++.|.+|+++. ++... ..+..-+..+.+|.. .+..++ |+|+| ++|+++..+ . .|.+|++.
T Consensus 213 ~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 213 AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECC
Confidence 478999998753 32211 111111111222333 588999 99999 777666543 3 89999996
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEcc---CCCEEEEEc-C-CeEEEEEeeC
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 372 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~~-~-~~i~iwd~~~ 372 (515)
++++. ..... ...+...+..++|+| +|++|++++ + +.|.+|++..
T Consensus 292 ~g~~~----~~~~~---------~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 292 CGSIE----KQLFL---------SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TSCEE----EEEEE---------EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCCEE----Eeeee---------eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 44321 00000 011123456789999 899999875 4 8999999985
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-15 Score=136.54 Aligned_cols=309 Identities=8% Similarity=-0.020 Sum_probs=180.7
Q ss_pred CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeee
Q 010206 134 NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV 213 (515)
Q Consensus 134 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~ 213 (515)
.|+.|.+||..+++......... .+ .++++|||+.+........ ....+..++.|.+||
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spdg~~lyv~~~~~~--~~~~g~~~~~v~v~d-- 87 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAF----------------NG-HVQVSNDGKKIYTMTTYHE--RITRGKRSDVVEVWD-- 87 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCE----------------EE-EEEECTTSSEEEEEEEEET--TSSSSCEEEEEEEEE--
T ss_pred ccCeEEEEECCCCeEEEEecCCC----------------CC-ceEECCCCCEEEEEEeccc--ccccCCCCCEEEEEE--
Confidence 47899999999888665443221 12 6799999998822110000 000123467899999
Q ss_pred ecccccccccceeeeee-c-c---CcCCeEEEEecCCCCEEEEe--C-CCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 214 VTSQETNLVAGCRRIYA-H-A---HDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 214 ~~~~~~~~~~~~~~~~~-~-~---~~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
....+ ...... . . +......++++|++++|+++ . +++|.+||+.+.+....++ . . ..
T Consensus 88 ~~t~~------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i-------~-~-~~ 152 (361)
T 2oiz_A 88 ADKLT------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVT-------A-A-AG 152 (361)
T ss_dssp TTTCC------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEG-------G-G-TT
T ss_pred CcCCc------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEe-------c-C-CC
Confidence 33222 111111 1 1 23456789999999999887 3 6899999999765432101 1 1 12
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C
Q 010206 286 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 363 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~ 363 (515)
...+.+.|++...+++.+.||.+.+|++.. ++.... ... ...+.....++ .+.+++++..++..+. +
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~-~~~---------~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ 221 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ-SRS---------KQMFSVKDDPI-FIAPALDKDKAHFVSYYG 221 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-EEC---------CCCSCTTTSCB-CSCCEECSSEEEEEBTTS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-ccc---------cceEcCCCCce-EEEecccCCEEEEEeCCC
Confidence 234667887657888899999999999865 332100 000 00011111222 2334677776666554 8
Q ss_pred eEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-----------CCcEEEEecCC
Q 010206 364 TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----------SNLFRVFGCSE 430 (515)
Q Consensus 364 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-----------dg~i~iw~~~~ 430 (515)
.+.++|+.. .... ..+......... ..... .....++|+||++.++.+.. ++.|.+||+.+
T Consensus 222 ~v~v~d~~~-~~~~~~~~~~~~~~~~~~-~~~~p----~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t 295 (361)
T 2oiz_A 222 NVYSADFSG-DEVKVDGPWSLLNDEDKA-KNWVP----GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT 295 (361)
T ss_dssp EEEEEECSS-SSCEEEEEEESCCHHHHH-TTCEE----CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred eEEEEEecC-CCceecccccccCccccc-ccccc----CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence 999999874 2211 111110000000 00000 00113789999888776543 35899999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
+ +.+.++..+. +..++++|++++|++++. +.|.+++..... .+..............++++|+|.
T Consensus 296 ~-~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 296 K-QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp T-EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCSSEEEEEECCCSC
T ss_pred C-cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCCCcEEEEecCCCC
Confidence 7 5557777776 889999999999998887 999995432210 011111123456778999999986
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-14 Score=133.58 Aligned_cols=276 Identities=12% Similarity=0.088 Sum_probs=177.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..|.+++|++++..++....++.++.|.-. ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------------------eeEEEeccC------------ccc
Confidence 457788999998888887788888888321 112233333 457
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.+++| ++++.+++++..++.|.+||..+++.....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 88999 566777777788899999998876533221
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC----CcEEEEeCCCCCcccc
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFN 270 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~ 270 (515)
..+...+.+++++++++++++. .+ +.|.+||.++.....
T Consensus 83 -----------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~- 126 (333)
T 2dg1_A 83 -----------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD- 126 (333)
T ss_dssp -----------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE-
T ss_pred -----------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE-
Confidence 1123568899999999988887 55 689999987654321
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEec------CCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+. ....+...+.+++++|++ +++++... .+.|..+|..+++.. .+. .....
T Consensus 127 ~~-----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~------------~~~~~ 183 (333)
T 2dg1_A 127 II-----EDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PII------------QNISV 183 (333)
T ss_dssp EE-----CSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----EEE------------EEESS
T ss_pred EE-----ccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----Eee------------cCCCc
Confidence 11 001234578999999998 77776543 245666665543321 111 11134
Q ss_pred eeEEEEccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
+..++|+|+|+.|+.+ +. +.|.+||+...+..+..+...... ... . ......++++++|+++++...++.
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCE
Confidence 7889999999866654 43 899999997434443332110000 000 0 011347999999998888778899
Q ss_pred EEEEecCCCCcceeeeccCC------CceeeEEECCCCCeeEeecCC
Q 010206 423 FRVFGCSEGSAESTTLEASK------NPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 423 i~iw~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~~~d 463 (515)
|.+||.+ + .....+..+. ..+..++++|+++.|+.++.+
T Consensus 256 v~~~d~~-g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 256 VLVFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEECCC-C-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999984 3 3334444333 267899999998777655554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-15 Score=147.98 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=122.6
Q ss_pred cCCCCE-EEEe--CCCcEEEEeCC--C-CCcccceecccCccccc-----cCCceEEEEEecCCCcEEEEEecC------
Q 010206 243 NSDGET-FISA--DDLRINLWNLE--I-SNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK------ 305 (515)
Q Consensus 243 ~~~~~~-l~s~--~d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~p~~~~~l~~~~~d------ 305 (515)
|||++. |+.+ .+..|.++++. . +. .. .+.. |...+.+++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGP 156 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSST
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCC
Confidence 499998 7776 35667777765 2 22 21 2222 56678899999999 888888776
Q ss_pred ----CeEEEEecCc------ccccccccceeeeccCCCcccccc-ccccceeEEEEccCCCEEEEEc-C--------CeE
Q 010206 306 ----GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRHILSRD-Y--------MTL 365 (515)
Q Consensus 306 ----g~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~-~--------~~i 365 (515)
..|.+||+.+ +... . +. .+...+..++|||||++|+..+ + ..|
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~-----~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVR-----E------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSE-----E------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred CCceeEEEEEECCCCccccCCcee-----E------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 5899999987 4321 1 11 2235678899999999998754 2 379
Q ss_pred EEEEeeCCCC--CeeeEeee-ccccccccccccCCCccceeeEEEcCCCCEEEEecCCC--cEEEEecCCCCcceeeecc
Q 010206 366 KLWDINMDSG--PVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 366 ~iwd~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~ 440 (515)
++||+...+. ....+... ... +..++|+|||+++++++.++ .|++||+.++. .......
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~ 283 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRR 283 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCC
T ss_pred EEEEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccc
Confidence 9999983131 23333322 222 34899999999888888888 66666765553 3233333
Q ss_pred CCCc--------eeeEEECCCCCeeEeecCCCeEEE
Q 010206 441 SKNP--------MRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 441 ~~~~--------v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+... +..++++|+++++++++. +.++|
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 3222 567889999999999998 88888
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-13 Score=132.31 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=202.9
Q ss_pred CCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecC
Q 010206 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (515)
Q Consensus 45 ~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~ 124 (515)
|.+.++++...++.|.++|..+++.. ..+... ..+..+.| ++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~g-------------~~p~~v~~--Sp 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDTG-------------YAVHISRL--SA 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECS-------------SCEEEEEE--CT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeCC-------------CCccceEE--CC
Confidence 44556777778899999999877642 222211 34678888 66
Q ss_pred CCcEEEeeeCCCeEEEEEcc--CCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC
Q 010206 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (515)
Q Consensus 125 ~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 202 (515)
+++++++++.|+.|.+||+. +.+......
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------- 237 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------- 237 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEE-------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-------------------------------------------------
Confidence 78899999999999999985 443221110
Q ss_pred CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEec----CCCCEEEEe--CCCcEEEEeCCCCCcccceecccC
Q 010206 203 GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKP 276 (515)
Q Consensus 203 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~ 276 (515)
. ......++|+ |||++++++ .+++|.++|..+.+.... +....
T Consensus 238 ----------------------------~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~-i~~~~ 286 (567)
T 1qks_A 238 ----------------------------I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI-QSTRG 286 (567)
T ss_dssp ----------------------------C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE-EECCE
T ss_pred ----------------------------c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE-Eeccc
Confidence 0 1234688999 699998887 589999999887664432 21111
Q ss_pred ccc---cccCC-ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 277 ANM---EDLTE-VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 277 ~~~---~~~~~-~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
... ..|.. .+..+..+++++.+++....+|.|.++|....+... ...... ......+.|+|
T Consensus 287 ~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~p 351 (567)
T 1qks_A 287 MTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDG 351 (567)
T ss_dssp ECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECT
T ss_pred cccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECC
Confidence 001 11223 678899999886667777778999999987643110 111111 12356789999
Q ss_pred CCCEEEEEc-C-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEE-EcCCCCE-EEEec-CCCcEEEE
Q 010206 353 NGRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGGR-VATGS-YSNLFRVF 426 (515)
Q Consensus 353 ~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~-l~s~s-~dg~i~iw 426 (515)
+|++++++. . +.|.++|+.+ ++.+..+.. ....-. . . ... ++|++.. .+++. .++.|.++
T Consensus 352 dgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php--------g--~---g~~~~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 352 SHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP--------G--R---GANFVHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp TSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC--------c--c---ceeeECCCCCcEEEeCCCCCCeEEEe
Confidence 999988764 3 8999999986 665555543 111100 0 0 223 5787544 44543 56899999
Q ss_pred ecCCCC------cceeeeccCCCceeeEEECCCCCeeEeecC-------CCeEEEecCCCC-----Ccc-ccCC-----c
Q 010206 427 GCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SAL-DANG-----N 482 (515)
Q Consensus 427 ~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------d~~v~l~~~~~~-----~~~-~~~~-----~ 482 (515)
|..+.+ +.+.+++.....-..+..+|+++++..... ..+|.+++.... ... +... .
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~ 497 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG 497 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence 998732 233555544333345778999998877653 347777443333 100 0100 0
Q ss_pred cccccCCeeEEEEcCCCCEEEEEc------CCcEEEEe
Q 010206 483 AFDFSMKLLHLAWHPSENSIACAA------SNSLYMYY 514 (515)
Q Consensus 483 ~~~~~~~i~~~~~s~~~~~la~~~------~~~~~i~~ 514 (515)
+.+....+.++.|+|+|+.+.++. ++.+.+++
T Consensus 498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 011245789999999999988762 46677765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-13 Score=124.97 Aligned_cols=270 Identities=12% Similarity=0.052 Sum_probs=169.6
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 254 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d 254 (515)
++.|++++..+ +....++.++.|. ...... +..+...+.+++|++++++++++ .+
T Consensus 10 ~~~~~~~~~~~------------~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 10 TLFYSGKSNSA------------VPIISESELQTIT-----------AEPWLE-ISKKGLQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp BCCSCGGGGCS------------SCCCCGGGSCEEE-----------CEEEEE-EESSCCCEEEEEECTTSCEEEEETTT
T ss_pred eeeecCCccce------------eEEeecccCcccc-----------cceeEE-EeccCccccCcEECCCCCEEEEECCC
Confidence 67788887776 6667777777664 112222 24555677899999999988887 78
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----CeEEEEecCcccccccccceeeecc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+.|.+||..+++... + ...+...+.+++++|++ +++++...+ +.|.+||..++.... .+...
T Consensus 66 ~~i~~~d~~~~~~~~-~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~----~~~~~- 131 (333)
T 2dg1_A 66 GNIFKINPETKEIKR-P-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQD----IIEDL- 131 (333)
T ss_dssp CEEEEECTTTCCEEE-E-------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEE----EECSS-
T ss_pred CEEEEEeCCCCcEEE-E-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEE----EEccC-
Confidence 999999988654321 1 11345679999999998 777776666 689999987765310 11100
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.+...+.+++++|+|+++++... ....||.+......+..+...... ...+
T Consensus 132 ---------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~i 187 (333)
T 2dg1_A 132 ---------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---------------ANGI 187 (333)
T ss_dssp ---------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---------------EEEE
T ss_pred ---------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc---------------ccce
Confidence 01246889999999998887542 234555554323333333222111 2379
Q ss_pred EEcCCCCEE-EEecCCCcEEEEecCCCCcceee--------eccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCc
Q 010206 406 CLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTT--------LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA 476 (515)
Q Consensus 406 ~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~ 476 (515)
+|+|+|++| ++.+.++.|++|++.+.+..... +.++ ..+..+++++++.++++...++.|.+++.....-
T Consensus 188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~ 266 (333)
T 2dg1_A 188 ALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPI 266 (333)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEE
Confidence 999999865 45566889999999642222111 1122 3567899999999888877778787743211000
Q ss_pred cccCCcc--ccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 477 LDANGNA--FDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 477 ~~~~~~~--~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
..+.... .++...+.+++|+||++.|++++.+
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 0010000 0111268999999999888766654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-14 Score=128.46 Aligned_cols=260 Identities=9% Similarity=0.071 Sum_probs=165.6
Q ss_pred ccceEEEEECCCCCeEEeecCC------------------------CeEEEEEcccCcccCccccCcccccccccCCccc
Q 010206 35 VDIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (515)
-+.+.+|+++|+|+++++...+ +.|.+||..+++..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------- 82 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------------- 82 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------------
Confidence 3679999999999999888777 35777776655421
Q ss_pred eeeeecc-cCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCe-eEEEeeccCCcccCCCCCCcc
Q 010206 91 RYKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 91 ~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~ 168 (515)
..+. ++- .....+++ ++++.++++...++.|++|+..... ........
T Consensus 83 ---~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------------- 132 (329)
T 3fvz_A 83 ---QSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS------------- 132 (329)
T ss_dssp ---EEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT-------------
T ss_pred ---eccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc-------------
Confidence 1111 121 45788999 5667778777888999999976542 11110000
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCC
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE 247 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 247 (515)
+ ..+. ..++...+..++++| ++.
T Consensus 133 --------------~---------------~~g~---------------------------~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 133 --------------M---------------QPGS---------------------------DQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp --------------T---------------BCCC---------------------------STTCCSSEEEEEECTTTCC
T ss_pred --------------C---------------CCCC---------------------------CccccCCCcEEEEeCCCCe
Confidence 0 0000 012335678999999 788
Q ss_pred EEEEe--CCCcEEEEeCCCCCcccceecccCc---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 248 TFISA--DDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 248 ~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
++++. .++.|++||.. +..... +..... ...++-..+..++++|++..++++...++.|++||..+++...
T Consensus 157 lyv~d~~~~~~I~~~~~~-g~~~~~-~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~-- 232 (329)
T 3fvz_A 157 VFVSDGYCNSRIVQFSPS-GKFVTQ-WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR-- 232 (329)
T ss_dssp EEEEECSSCCEEEEECTT-SCEEEE-ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--
T ss_pred EEEEeCCCCCeEEEEcCC-CCEEEE-eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE--
Confidence 88886 48999999954 332221 100000 0012234589999999832788888889999999998665432
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEE-------EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-------RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-------~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
.+.. ..+...+..++|+| +..+++ ... ..|++||+.+ ++.+..+.....
T Consensus 233 --~~~~----------~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~--------- 289 (329)
T 3fvz_A 233 --EIKH----------ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRK--------- 289 (329)
T ss_dssp --EECC----------TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSS---------
T ss_pred --EEec----------cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCC---------
Confidence 2211 12234677888998 333333 222 5899999886 776666531111
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
.......++++|+|.++++...+++|++|++..
T Consensus 290 ---~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 ---HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ---CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ---ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 111234899999998888889999999999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-13 Score=124.03 Aligned_cols=244 Identities=10% Similarity=0.121 Sum_probs=161.2
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEe-cCCCcEEEEEec-CCeE
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGSI 308 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-p~~~~~l~~~~~-dg~i 308 (515)
++-..+.+++++++++++++. .++.|.+||.. ++....+. .. ....++...+..+++. +++ +++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~-~~-~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFG-EC-GKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEEC-CB-SSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEec-cc-CCCcccccCceEEEEEcCCC-eEEEEcCCCCCEE
Confidence 455678999999999988887 78999999987 33222110 00 0112345678999995 666 66666543 8899
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
.+|| .+++.. ..+.. .+...+.+++++|+|+++++... +.|.+||.. ++.+..+.....
T Consensus 103 ~~~d-~~g~~~----~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~-- 162 (286)
T 1q7f_A 103 QIYN-QYGQFV----RKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKH-- 162 (286)
T ss_dssp EEEC-TTSCEE----EEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTT--
T ss_pred EEEC-CCCcEE----EEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCc--
Confidence 9999 444432 11111 11245789999999998777655 899999964 555544432111
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc--CCCceeeEEECCCCCeeEeecCCC-
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSG- 464 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~- 464 (515)
......++++++|+++++.+.++.|++|+.. + .....+.. +...+..+++++++.++++...++
T Consensus 163 -----------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 163 -----------LEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-G-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp -----------CSSEEEEEECSSSEEEEEEGGGTEEEEEETT-C-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred -----------cCCcEEEEECCCCCEEEEECCCCEEEEEcCC-C-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 1113489999999988888889999999975 3 33344433 346778999999999988888876
Q ss_pred eEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 465 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 465 ~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.|.+++.....-..+.. ......+.+++++|+|+++++..++.+.+|.
T Consensus 230 ~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 230 NLTIFTQDGQLISALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp EEEEECTTSCEEEEEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEEEECCCCCEEEEEcc--cCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 88884321110000100 0112347899999999887776666788886
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=124.93 Aligned_cols=238 Identities=9% Similarity=0.015 Sum_probs=155.9
Q ss_pred ccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010206 231 HAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 308 (515)
Q Consensus 231 ~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i 308 (515)
..+.....+++|+|+++ +++++ .++.|..||..+. . . .+..+...+.+++++|++ +++++...++.|
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i 92 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRL 92 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence 34556678999999998 66666 7899999999865 2 1 223356778999999998 777777677899
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE----Ec-----------C-CeEEEEEeeC
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINM 372 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s----~~-----------~-~~i~iwd~~~ 372 (515)
.+||..+++... ...... ......+..++++|+|+++++ |. + +.-.||.+..
T Consensus 93 ~~~d~~~g~~~~----~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 93 ERQREPGGEWES----IADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EEECSTTCCEEE----EECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEEcCCCCcEEE----EeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 999997775321 111000 001134678999999998887 32 0 1225555553
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc---eeeeccCCCceeeEE
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQV 449 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~---~~~~~~~~~~v~~~~ 449 (515)
. ..+..+..+... ...++|+||++.|++.+.++.|++|++...+.+ ...+..+...+..++
T Consensus 161 ~-g~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~ 224 (296)
T 3e5z_A 161 D-GTLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR 224 (296)
T ss_dssp T-SCEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred C-CCEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence 2 333333222211 237999999999988888899999999732233 223334455677899
Q ss_pred ECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE-cCCCCEEEEEcCCcEEEEe
Q 010206 450 QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY 514 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~la~~~~~~~~i~~ 514 (515)
+.++|.++++. ++.|.+++-. + +.......+.. +.+++| +|+++.|.+++.++++-+.
T Consensus 225 ~d~~G~l~v~~--~~~v~~~~~~---g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 225 VDAGGLIWASA--GDGVHVLTPD---G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp EBTTSCEEEEE--TTEEEEECTT---S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred ECCCCCEEEEc--CCeEEEECCC---C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 99999877766 6666663211 1 11111112234 899999 5899999999988877654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-13 Score=127.17 Aligned_cols=214 Identities=10% Similarity=0.053 Sum_probs=139.7
Q ss_pred cCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecc--cCccccccCCceEEEEEec-CCCcEEEEEe-cCC
Q 010206 232 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMEDLTEVITSAEFHP-THCNMLAYSS-SKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~p-~~~~~l~~~~-~dg 306 (515)
++-..+..++++++++++++. .++.|++||..........+.. .+..-..+...+..++++| ++ .++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCC
Confidence 445678999999999988887 7899999998643212211100 0000123445689999999 66 7888776 699
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC-CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
.|++||. ++... ..+....... ....++......++++|+ ++++++... ++|++||..+ ++.+..+....
T Consensus 167 ~I~~~~~-~g~~~----~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~ 238 (329)
T 3fvz_A 167 RIVQFSP-SGKFV----TQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHAS 238 (329)
T ss_dssp EEEEECT-TSCEE----EEECEECCSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTT
T ss_pred eEEEEcC-CCCEE----EEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccc
Confidence 9999994 44432 2222111000 000122245789999998 655555544 8999999975 67666664332
Q ss_pred cccccccccccCCCccceeeEEEcC------CCCEEEEecCCCcEEEEecCCCCcceeee---ccCCCceeeEEECCCCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRP 455 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~s~dg~i~iw~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 455 (515)
... .+..++|+| +|+..++...+..|++|++.+++ .+..+ ..+...+..++++|+|.
T Consensus 239 ~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 239 FGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSE
T ss_pred cCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCC
Confidence 110 134788888 44433344455699999998874 44555 46777789999999998
Q ss_pred eeEeecCCCeEEE
Q 010206 456 SRPLGSLSGVVRR 468 (515)
Q Consensus 456 ~l~s~~~d~~v~l 468 (515)
.+++...++.|++
T Consensus 305 lyvad~~~~~I~~ 317 (329)
T 3fvz_A 305 VYIGDAHTNTVWK 317 (329)
T ss_dssp EEEEESSSCCEEE
T ss_pred EEEEECCCCEEEE
Confidence 8888888888887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=123.80 Aligned_cols=241 Identities=9% Similarity=0.011 Sum_probs=158.7
Q ss_pred ccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 4556778999999998 7888888999999998755 2 1222333
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..+.++++ ++++.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 55889999 5667777666667899999997776443321100
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE----eC--------------
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----AD-------------- 253 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~-------------- 253 (515)
......+..++++|+|+++++ +.
T Consensus 111 ---------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~ 151 (296)
T 3e5z_A 111 ---------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP 151 (296)
T ss_dssp ---------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred ---------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence 001134567788888887776 21
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC-cccc-cccccceeeeccC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEA 331 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~ 331 (515)
.+.|..++.. .... .+..+...+..++|+|++ +.+++.+.++.|.+||+. ++.. .. ...+
T Consensus 152 ~~~l~~~~~~--g~~~--------~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~----- 213 (296)
T 3e5z_A 152 GRWVFRLAPD--GTLS--------APIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHF----- 213 (296)
T ss_dssp SCEEEEECTT--SCEE--------EEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEE-----
T ss_pred CcEEEEECCC--CCEE--------EeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEe-----
Confidence 2345555544 2221 223345567899999999 777777778999999986 3332 10 1111
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE-cCC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGD 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~ 410 (515)
..+...+..++++++|+++++. .+.|.+||.. ++.+..+..+.. . .+++| +|+
T Consensus 214 -------~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d 267 (296)
T 3e5z_A 214 -------TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPE 267 (296)
T ss_dssp -------CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTT
T ss_pred -------eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCC
Confidence 1122456789999999977777 7899999985 666666655443 1 37889 589
Q ss_pred CCEEEEecCCCcEEEEecCCC
Q 010206 411 GGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~ 431 (515)
++.|+.++.+ .+.-++.++.
T Consensus 268 ~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 268 GRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp SCEEEEEETT-EEEEEECSCC
T ss_pred CCEEEEEcCC-eEEEEEcccc
Confidence 9988888776 3445555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-12 Score=113.43 Aligned_cols=277 Identities=7% Similarity=-0.003 Sum_probs=181.2
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
+...+.+++++++|+++++...++.|.+|+.. ++.. . .....+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence 34678999999999988877668899999976 3321 0 0011112 4
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.+.++++ ++++..+++...++.|..|+.. ++.... .
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~---------------------------------------- 93 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-T---------------------------------------- 93 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-e----------------------------------------
Confidence 5888888 5566666666667888888865 321111 0
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccccee
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
.......+.++++++++.++++. .++.|..||. +++.. ..
T Consensus 94 ------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~- 134 (299)
T 2z2n_A 94 ------------------------------------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY- 134 (299)
T ss_dssp ------------------------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE-
T ss_pred ------------------------------------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee-
Confidence 00122457789999999888887 6889999998 33322 11
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
........+..+++.+++ +++++...++.|..||. +++.. .+.. ......+.++++++
T Consensus 135 -----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~~~ 192 (299)
T 2z2n_A 135 -----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI----------PTPASGPVGITKGN 192 (299)
T ss_dssp -----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECT
T ss_pred -----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC----------CCCCCcceeEEECC
Confidence 112234568999999998 77777767889999998 55431 1111 11124578899999
Q ss_pred CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 353 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 353 ~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
+|++.++... +.|.+||. + ++. ..+.... ....+..++++++|+++++...++.|..||.. +
T Consensus 193 ~g~l~v~~~~~~~i~~~~~-~-g~~-~~~~~~~-------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g 255 (299)
T 2z2n_A 193 DDALWFVEIIGNKIGRITT-S-GEI-TEFKIPT-------------PNARPHAITAGAGIDLWFTEWGANKIGRLTSN-N 255 (299)
T ss_dssp TSSEEEEETTTTEEEEECT-T-CCE-EEEECSS-------------TTCCEEEEEECSTTCEEEEETTTTEEEEEETT-T
T ss_pred CCCEEEEccCCceEEEECC-C-CcE-EEEECCC-------------CCCCceeEEECCCCCEEEeccCCceEEEECCC-C
Confidence 9987777654 89999998 4 442 2222111 01124589999999977777678899999983 4
Q ss_pred CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 432 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
......+..+...+..+++ +++.+.++.+.++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 2222223445567888999 88888777665666665
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=136.93 Aligned_cols=175 Identities=10% Similarity=0.066 Sum_probs=103.9
Q ss_pred EEecCCCcEEEEE-----ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC-
Q 010206 290 EFHPTHCNMLAYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY- 362 (515)
Q Consensus 290 ~~~p~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~- 362 (515)
.|+|++ +.++.. ..+..|.+||+.+++... +..+...+..+.|+| +++.|+..++
T Consensus 148 ~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-----------------~~~~~~~~~~~~~sp~dg~~l~~~~~~ 209 (396)
T 3c5m_A 148 DWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELEV-----------------IHQDTAWLGHPIYRPFDDSTVGFCHEG 209 (396)
T ss_dssp GCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEEE-----------------EEEESSCEEEEEEETTEEEEEEEEECS
T ss_pred ccCCCC-cceeeeeeccCCCcceEEEEECCCCcEEe-----------------eccCCcccccceECCCCCCEEEEEecC
Confidence 456776 554433 356689999998765321 112235688999999 7887766432
Q ss_pred ------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-----CcEEEEecCCC
Q 010206 363 ------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEG 431 (515)
Q Consensus 363 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-----g~i~iw~~~~~ 431 (515)
..|.+||+.. ++ ...+..+... ..+..++|+|||++|+.++.+ +.|++||+.++
T Consensus 210 ~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 210 PHDLVDARMWLVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp CSSSCSCCCEEEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCceEEEEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 2577777753 32 2222221100 113478999999988776544 45999999877
Q ss_pred CcceeeeccCCCceeeEEECC-CCCeeEeec----------------CCCeEEEec--CCCCCccccCCccccccC----
Q 010206 432 SAESTTLEASKNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVK--GADNSALDANGNAFDFSM---- 488 (515)
Q Consensus 432 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------------~d~~v~l~~--~~~~~~~~~~~~~~~~~~---- 488 (515)
.... +.... ... +.++| +++++++++ .+..+.+++ +.+.. ....+..
T Consensus 275 ~~~~--l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~l~~~~~~~~~ 344 (396)
T 3c5m_A 275 ENEE--VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ------KLCKHSTSWDV 344 (396)
T ss_dssp CEEE--EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC------EEEECCCCCCC
T ss_pred CeEE--eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE------EccCCCCcccc
Confidence 4322 11111 122 88999 999888754 235666633 22211 1111222
Q ss_pred -------CeeEEEEcCCCCEEEEEcC
Q 010206 489 -------KLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 489 -------~i~~~~~s~~~~~la~~~~ 507 (515)
.+..++|+|||+.|++++.
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccccccCCCCCceEccCCCeEEEEec
Confidence 2567899999999987663
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-11 Score=109.87 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=154.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+.++++++++.++++. .++.|..||.. ++ . ..+ .+......+.++++.|++ .++++...++.|..||.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~-~~~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~ 127 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I-KEY-----TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD 127 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E-EEE-----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E-EEE-----eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence 457789999999988887 58889999976 22 1 111 112234568999999998 78777777889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.. .+.. ......+..++++++|+++++... +.|..||. . ++... +.....
T Consensus 128 -~g~~~-----~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~------- 181 (299)
T 2z2n_A 128 -DGKIR-----EYEL----------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTP------- 181 (299)
T ss_dssp -TCCEE-----EEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSST-------
T ss_pred -CCCEE-----EecC----------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCC-------
Confidence 44321 1111 111245789999999988887655 89999987 3 43322 211110
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
...+..++++++|+++++...++.|.+|+. ++......+..+...+..+++.+++..+++...++.|..++-.
T Consensus 182 ------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 182 ------ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ------CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 111348999999998887777889999999 5533222234455678899999999977776666777663321
Q ss_pred -CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 473 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 473 -~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... .. ........+.++++ +++++.++...+++..|+
T Consensus 255 g~~~--~~--~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 255 NIIE--EY--PIQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp TEEE--EE--ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred CceE--EE--eCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 111 01 01123457899999 888887776677887764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=138.59 Aligned_cols=250 Identities=10% Similarity=0.004 Sum_probs=152.1
Q ss_pred ccccceEEEEECCCCCeEE-----eecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~la-----sg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+|...+..++|||||++|| .|+.+..|++||+.+++... ...+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~--------- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEG--------- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSC---------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCc---------
Confidence 4556799999999999999 55666799999998876320 000110
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCe-------------EEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcC
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (515)
.....++| ++|++.|+.++.|.. |++|++.++.....
T Consensus 168 -----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------------- 217 (695)
T 2bkl_A 168 -----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT----------------------- 217 (695)
T ss_dssp -----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------------
T ss_pred -----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-----------------------
Confidence 11267889 567888998888765 66666655431000
Q ss_pred CCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C
Q 010206 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 253 (515)
Q Consensus 175 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~ 253 (515)
.++. ...+...+..+.|+|||++|+.+ .
T Consensus 218 ---------------------------------lv~~------------------~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 218 ---------------------------------VVHE------------------RTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp ---------------------------------EEEC------------------CCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred ---------------------------------EEEe------------------cCCCCEEEEEEEECCCCCEEEEEEe
Confidence 0000 12344567889999999998876 4
Q ss_pred CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEecCccccccccccee
Q 010206 254 DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 254 d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
++ .|.+|+..++. .. .+..+...+....+ +++ .+++.+. .++.|.+||+.++.... ...+
T Consensus 247 ~~~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l 313 (695)
T 2bkl_A 247 RGWSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEI 313 (695)
T ss_dssp ETTTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEE
T ss_pred CCCCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEE
Confidence 44 56666554332 11 23334555566666 677 5444444 25789999987754200 0111
Q ss_pred eeccCCCcccccccc-ccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 327 EEQEAPGTRSFFTEI-IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
+..+ ...+..++|+ ++.++++.. ++..+||.+...++....+..+... .+..
T Consensus 314 -----------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~ 367 (695)
T 2bkl_A 314 -----------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASN 367 (695)
T ss_dssp -----------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECC
T ss_pred -----------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEE
Confidence 1111 2457788888 666667665 4888888776434444444333110 1336
Q ss_pred EEEcCCCCEEE----EecCCCcEEEEecCCCC
Q 010206 405 CCLSGDGGRVA----TGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 405 ~~~s~~~~~l~----s~s~dg~i~iw~~~~~~ 432 (515)
++++|+++.|+ +....++|++||+.+++
T Consensus 368 ~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 368 LMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 78889998776 33456899999998764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-13 Score=135.59 Aligned_cols=161 Identities=10% Similarity=0.047 Sum_probs=100.6
Q ss_pred CcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCCC------CCcccceecccCccccccCCceEEEEEecCCCcEEE
Q 010206 233 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 300 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~ 300 (515)
|...+..+.|+|||++|+.+ . +..|++||+.+ +..... .+..+...+.. .|+|+| ..|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~ 301 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT 301 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence 44567789999999998875 3 56899999976 321111 23334444544 488888 5555
Q ss_pred EEec-C---CeEEEEecCcccccccccceeeeccCCCccccccccc--cceeEEEEccCCCEEEEEc-CC--eEEEEEee
Q 010206 301 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRD-YM--TLKLWDIN 371 (515)
Q Consensus 301 ~~~~-d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~s~~-~~--~i~iwd~~ 371 (515)
..+. + +.|.+||+.++... ..+. +..|. ..+..+.|++++.++++.. ++ .|.+||+.
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~------------l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEES--KWKV------------LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGG--GCEE------------EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCCCCEEEEEeCCCCCcc--ccee------------ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC
Confidence 4444 2 36999998775310 0011 11121 2577889987777777764 35 45666664
Q ss_pred CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe----cCCCcEEEEecCCCC
Q 010206 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGS 432 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----s~dg~i~iw~~~~~~ 432 (515)
. ++.+..+..+... +..++++|+++.|+.. ...+.|+.||+.+++
T Consensus 368 ~-g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 T-GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T-CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C-CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 5555666544322 3478899998766522 246799999998774
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-13 Score=122.57 Aligned_cols=281 Identities=10% Similarity=0.027 Sum_probs=154.1
Q ss_pred cccccceEEEEECCCCCeEEeec---------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (515)
+.....+..+++ ||+++|... .++.|.+|++.+++.. .+
T Consensus 11 l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l------ 58 (347)
T 2gop_A 11 FAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI------ 58 (347)
T ss_dssp CCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE------
T ss_pred ceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec------
Confidence 344567788888 899887642 2567899998765421 11
Q ss_pred ccccccccccceeEEEEEeecCCCcEEEeeeCC---C--eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 103 ~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
..+..++| +++|++|+.++.+ + .|.+|++.+++...+..... +. .+
T Consensus 59 ----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----------~~-------~~ 109 (347)
T 2gop_A 59 ----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----------IR-------SL 109 (347)
T ss_dssp ----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----------EE-------EE
T ss_pred ----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----------cc-------ce
Confidence 22778899 5677788887653 3 47777877776544433210 11 45
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcE
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 257 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i 257 (515)
.|+|||+.+ +....+ ... ......+..+.|..++..+.......|
T Consensus 110 ~wspdg~~l------------~~~~~~------------~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 110 EWNEDSRKL------------LIVGFK------------RRE-----------DEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EECTTSSEE------------EEEEEC------------CCC--------------------CCCC---------CEEEE
T ss_pred eECCCCCEE------------EEEEcc------------CCC-----------cCCcEEEcccceeecCcccccCccceE
Confidence 566666654 110000 000 000001112222223222222224678
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC-------eEEEEecCcccccccccceeeecc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
.+||+.+++.... +.. . .+..++|+|++ +++++..+. ...+|.+.+++. ..
T Consensus 155 ~~~d~~~~~~~~~--------l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~----- 212 (347)
T 2gop_A 155 WIFDTESEEVIEE--------FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EK----- 212 (347)
T ss_dssp EEEETTTTEEEEE--------EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EE-----
T ss_pred EEEECCCCeEEee--------ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EE-----
Confidence 9999986653121 122 2 67889999997 666665542 345554443321 11
Q ss_pred CCCccccccccccceeEEEEccCCCEEEEEc-C--------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 331 APGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
+..+ ..+..+ +|+|+.|+..+ + ..|.+|| . ++.......+...
T Consensus 213 -------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~--------------- 264 (347)
T 2gop_A 213 -------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG--------------- 264 (347)
T ss_dssp -------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------
T ss_pred -------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc---------------
Confidence 1112 234444 99999887654 2 3677777 2 4332222222211
Q ss_pred eee-EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 402 KFE-CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 402 v~~-~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+.. +.|+ |+ ++++++.++.+++| +.++ .. ..+..+...+..+.++| .++++++.++.
T Consensus 265 ~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 265 VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp EEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 334 8899 88 88999999999999 8844 33 33444577888999999 66666665554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=120.61 Aligned_cols=210 Identities=11% Similarity=0.065 Sum_probs=133.3
Q ss_pred CeEEEEecCCCCEEEEe-C-C--Cc--EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC----
Q 010206 236 HINSISNNSDGETFISA-D-D--LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 305 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~-d--~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d---- 305 (515)
.+..++|+|||+.|+.. . + +. |.+||+.+++.. .+..+.. +..++|+|++ +.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---------~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~ 128 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---------KILEAKN-IRSLEWNEDS-RKLLIVGFKRRED 128 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE---------EEEEESE-EEEEEECTTS-SEEEEEEECCCC-
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE---------EEEcCCC-ccceeECCCC-CEEEEEEccCCCc
Confidence 46778999999998876 3 2 33 777788754422 1122233 8999999999 777766532
Q ss_pred -----------------------CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 306 -----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 306 -----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
..|.+||+.+++... .+ .. . .+..+.|+|+| +++++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l------------~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EF------------EK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEE----EE------------EE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEe----ee------------cC-C-CcccccCCCCe-EEEEEec
Confidence 568889987765311 11 11 1 47789999999 7776642
Q ss_pred -C-------eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC--------CcEEEE
Q 010206 363 -M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVF 426 (515)
Q Consensus 363 -~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d--------g~i~iw 426 (515)
. ...||.+. .++ ...+..+ .. ...++|||++|+.++.+ ..|++|
T Consensus 190 ~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE-DGK-EEKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp CCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccccccccccccEEEeC-CCc-eEEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 1 45666665 243 3333332 11 22349999988877643 468888
Q ss_pred ecCCCCcceeeeccCCCceee-EEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 427 GCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
| ++ ........+...+.. +.|+ ++ ++++++.++.++|+ -.. + .. .....+...|.+++|+| .+++++
T Consensus 250 d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~--g-~~-~~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 250 D--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD--G-EI-KPIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp C--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES--S-SE-EEEECSSSEEEEEEESS--SEEEEE
T ss_pred C--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC--C-ce-EEEecCCCeEEeeeeeC--cEEEEE
Confidence 8 33 343445566777876 8999 88 88999999988883 211 1 11 12223467799999999 555555
Q ss_pred cC
Q 010206 506 AS 507 (515)
Q Consensus 506 ~~ 507 (515)
+.
T Consensus 318 ~~ 319 (347)
T 2gop_A 318 ET 319 (347)
T ss_dssp EC
T ss_pred cC
Confidence 43
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-11 Score=119.43 Aligned_cols=297 Identities=11% Similarity=0.070 Sum_probs=184.5
Q ss_pred cccceEEEEECCCCCeEEeecCCCeEEEEEcc--cCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
....+..++|+|||++|++++.++.|.+||+. +.+.. ..+...
T Consensus 195 ~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-----------------------~~i~~G------------ 239 (567)
T 1qks_A 195 TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-----------------------AEIKIG------------ 239 (567)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-----------------------EEEECC------------
T ss_pred CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-----------------------EEEecC------------
Confidence 34456799999999999999999999999985 33321 222211
Q ss_pred cceeEEEEEee--cCCCcEEEeeeC-CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 112 EEKINKIRWCQ--SANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 112 ~~~v~~l~~~~--~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.....++|++ .++|++++++.. +++|.++|..+.+...........
T Consensus 240 -~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~------------------------------ 288 (567)
T 1qks_A 240 -SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT------------------------------ 288 (567)
T ss_dssp -SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC------------------------------
T ss_pred -CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc------------------------------
Confidence 3367888941 047778888754 599999998887765543321000
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccC-cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFISA--DDLRINLWNLEIS 265 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 265 (515)
.+. ...| ...+..+..++++..++.. .+|.|.++|....
T Consensus 289 ----------------------------~~~----------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 289 ----------------------------YDE----------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp ----------------------------TTT----------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred ----------------------------ccc----------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 000 0011 1256678888887766665 6899999998765
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEE-EecCCeEEEEecCcccccccccceeee-ccCCCcccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (515)
+... +. .+ ........+.|+|++ ++|++ ...++.|.++|+.++++.. .... .. ..|.+
T Consensus 331 ~~~~-v~-----~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~~----~i~vgg~--------~Phpg 390 (567)
T 1qks_A 331 NNLK-TT-----EI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVA----IEDTGGQ--------TPHPG 390 (567)
T ss_dssp SEEE-EE-----EE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEE----EEECSSS--------SBCCT
T ss_pred ccce-ee-----ee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEEE----EEeccCc--------CCCCc
Confidence 4221 11 11 123456788999999 65554 4468899999999887532 1221 11 11221
Q ss_pred ceeEEEEccC-CCEEEEEc--CCeEEEEEeeCC------CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~-~~~l~s~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.-..+ ++|+ +...+++. ++.|.++|.... .+.++++...... . ..+..+|++++|
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----------~----~~i~~~p~~~~l 454 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----------S----LFIKTHPNSQYL 454 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----------C----CCEECCTTCSEE
T ss_pred cceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----------C----EEEEeCCCCCeE
Confidence 11112 5787 44445553 489999999852 2344555443211 0 157899999998
Q ss_pred EEecC-------CCcEEEEecCCC-----Ccceeeec--------cCCCceeeEEECCCCCeeEeecC-----CCeEEEe
Q 010206 415 ATGSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGSL-----SGVVRRV 469 (515)
Q Consensus 415 ~s~s~-------dg~i~iw~~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~-----d~~v~l~ 469 (515)
..... .++|.++|+.+. ......+. .....+..+.|+|+|+.+..+.+ ++.|.++
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 87652 469999999866 22212222 12456788999999998766633 5777774
Q ss_pred c
Q 010206 470 K 470 (515)
Q Consensus 470 ~ 470 (515)
+
T Consensus 535 D 535 (567)
T 1qks_A 535 D 535 (567)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-12 Score=114.05 Aligned_cols=156 Identities=6% Similarity=0.003 Sum_probs=106.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+..++++++++++++. .++.|.+|+..+..... ........+.+++++|++ +++++...++.|.+||.
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV--------LPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE--------CCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe--------eccccCCCceeEEEeCCC-CEEEEECCCCEEEEEec
Confidence 456789999999988776 68899999765433211 111223457889999998 77777777889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
........ . ..+...+.+++++++|.++++... +.|.+||... ... .......
T Consensus 179 ~~~~~~~~-----~-----------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~-~~~~~~~-------- 232 (270)
T 1rwi_B 179 ESNNQVVL-----P-----------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTS-TVLPFTG-------- 232 (270)
T ss_dssp TTCCEEEC-----C-----------CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCC-EECCCCS--------
T ss_pred CCCceEee-----c-----------ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC-Ccc-eeeccCC--------
Confidence 76542110 0 011145788999999977776654 8999999863 222 2211100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
...+..++++++|+++++...++.|+++++...
T Consensus 233 ------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 233 ------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 111458999999998889899999999998754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=133.94 Aligned_cols=240 Identities=8% Similarity=-0.050 Sum_probs=155.6
Q ss_pred cCcCCeEEEEecCCCCEEEEe-C-CC----cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+..++|||||++|+.+ + +| .|++||+.+++.... .+. ...+.+++|+||+ +.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-------~~~--~~~~~~~~wspDg-~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------VLE--RVKFSCMAWTHDG-KGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------EEE--EECSCCEEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-------ccc--CcccceEEEEeCC-CEEEEEEEC
Confidence 344567899999999999976 3 33 899999987764321 111 1225679999999 788888777
Q ss_pred Ce----------------EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc------CC
Q 010206 306 GS----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YM 363 (515)
Q Consensus 306 g~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~------~~ 363 (515)
+. |++|++.++..... ..+.. ..|...+..+.|||||++|+... ..
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~----------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEF----------PDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECC----------TTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred CccccccccccccCCCCEEEEEECCCCcccce--EEecc----------CCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 65 99999987652111 11111 11234577899999999988743 35
Q ss_pred eEEEEEeeC------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCCc
Q 010206 364 TLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSA 433 (515)
Q Consensus 364 ~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~~ 433 (515)
.|++||+.. +......+..+... + ...|+|+|+.|+..+.+ +.|.+||+.++..
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~---------------~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEG---------------E-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSS---------------C-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEEEEECcccccccCCccceEEeeCCCCc---------------E-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 899999874 22234555444322 1 23588999987765543 3699999987642
Q ss_pred -ceeeeccCCC--ceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 434 -ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 434 -~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
....+..|.. .+..+.+++++.++++...|+..+| ++ ..+.. .....+...+..++++|+++.|++..
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecCCCCCEEEEEE
Confidence 1234444433 6778888888888999999987766 22 11111 01112356788999999998877442
Q ss_pred C-----CcEEEEe
Q 010206 507 S-----NSLYMYY 514 (515)
Q Consensus 507 ~-----~~~~i~~ 514 (515)
. ..+++|+
T Consensus 399 ss~~~P~~i~~~d 411 (710)
T 2xdw_A 399 TSFLSPGIIYHCD 411 (710)
T ss_dssp ECSSCCCEEEEEE
T ss_pred eCCCCCCEEEEEE
Confidence 2 3466664
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=131.36 Aligned_cols=238 Identities=9% Similarity=-0.018 Sum_probs=148.5
Q ss_pred cCcCCeEEEEecCCCCEEEEe------CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+.+++|||||++|+.+ ++..|++||+.+++.... ..+... ....++|+||| +.|+.++.|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~d 188 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWLP 188 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEec
Confidence 455678899999999999953 246899999997764300 011111 12578999999 888888887
Q ss_pred Ce-------------EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-C----eEEE
Q 010206 306 GS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M----TLKL 367 (515)
Q Consensus 306 g~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~----~i~i 367 (515)
.. |++|++.++..... ..+.. ..|...+..+.|||||++|+..+. + .|.+
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW 256 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhce--EEEec----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence 65 99999987653111 11111 123346889999999999887542 3 5555
Q ss_pred EEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec---CCCcEEEEecCCCCc--ceeeeccC-
Q 010206 368 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS- 441 (515)
Q Consensus 368 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s---~dg~i~iw~~~~~~~--~~~~~~~~- 441 (515)
||.. ......+..+... +....+ ++|++++... .++.|.+||+.++.. ....+..+
T Consensus 257 ~~~~--~~~~~~l~~~~~~---------------~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 257 KRPG--EKDFRLLVKGVGA---------------KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS 318 (695)
T ss_dssp ECTT--CSSCEEEEECSSC---------------CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS
T ss_pred EcCC--CCceEEeecCCCc---------------eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC
Confidence 5443 3344455444322 124455 5666444444 358999999987642 12223333
Q ss_pred CCceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEEE
Q 010206 442 KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLYM 512 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~i 512 (515)
...+..+.++ ++.++++...|+..+| ++ +.... .+. ......|..++++|+++.|+.... ..+++
T Consensus 319 ~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 319 SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TVQ---LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--ECC---CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Eec---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 4567778887 6778899999998888 22 22111 111 112456788899999988874432 34666
Q ss_pred Ee
Q 010206 513 YY 514 (515)
Q Consensus 513 ~~ 514 (515)
|+
T Consensus 393 ~d 394 (695)
T 2bkl_A 393 TS 394 (695)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-10 Score=103.93 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=175.6
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4578999999999988877778899999976 3321 0 0111111 45
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
+.++++ .+++..+++...++.|..||.. ++.... .
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~----------------------------------------- 98 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-P----------------------------------------- 98 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-E-----------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-c-----------------------------------------
Confidence 788888 5666666666667888888876 443211 0
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
.......+.+++++++++++++. .++.|..+|.. ++.. ..
T Consensus 99 -----------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~-- 139 (300)
T 2qc5_A 99 -----------------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY-- 139 (300)
T ss_dssp -----------------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE--
T ss_pred -----------------------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec--
Confidence 01112456788999999988887 58899999986 3322 11
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.+......+.++++.+++ +++++...++.|..||. +++.. .+.. ..+...+..++++++
T Consensus 140 ----~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 140 ----DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL----------PTNAAAPVGITSGND 198 (300)
T ss_dssp ----ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECTT
T ss_pred ----cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC----------CCCCCCcceEEECCC
Confidence 112234568999999998 77666666789999998 44321 1111 111245789999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
|++.++... +.|.+||.. ++... +..... ...+..++++++|++.++...++.|..|+.. +.
T Consensus 199 g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~ 261 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTT--GEISE-YDIPTP-------------NARPHAITAGKNSEIWFTEWGANQIGRITND-NT 261 (300)
T ss_dssp SSEEEEETTTTEEEEECTT--CCEEE-EECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred CCEEEEccCCCEEEEEcCC--CcEEE-EECCCC-------------CCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc
Confidence 987777655 789999873 33222 211110 1114589999999977777778899999984 42
Q ss_pred cceeeeccCCCceeeEEECCCCCeeEeec
Q 010206 433 AESTTLEASKNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 433 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 461 (515)
.....+......+..+++.+++.+.++..
T Consensus 262 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 262 IQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 22223343456678999999988766655
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-11 Score=109.22 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=127.0
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCcccccc-CCceEEEEEecCCCcEEEEEec-CCeEEEEec
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS-KGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~p~~~~~l~~~~~-dg~i~~wd~ 313 (515)
.+.++.++|+|++|+ +.++.|..||. +++...+ +..+ ...+.++.+.|+| +++++.+. ++.+..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~--------~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~ 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWN--------IAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEE--------EECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEE--------EcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC
Confidence 456788899999888 55667999998 5654432 2222 3468899999999 88888777 778888875
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++.+.+ +..... ...+......+.+.++|+++++... +.|..||.. ++.+.++.....
T Consensus 107 -~Gk~l~~----~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~------- 166 (276)
T 3no2_A 107 -KGEVLSK----TEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGT------- 166 (276)
T ss_dssp -TSCEEEE----EEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSC-------
T ss_pred -CCCEEEE----EeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCC-------
Confidence 5554322 221110 0111134556678899999999865 999999986 777777765421
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC------CCceeeEEECCCCCeeEee
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~ 460 (515)
..++.+.++|+++++++.+++|..+|..+++ .+..+..+ ...+..++..++|.++++.
T Consensus 167 ---------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~-~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 167 ---------PFSSAFLDNGDCLVACGDAHCFVQLNLESNR-IVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ---------CCEEEECTTSCEEEECBTTSEEEEECTTTCC-EEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ---------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc-EEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 1267888999999999988999999999874 44444322 2236677788888877765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-11 Score=108.31 Aligned_cols=233 Identities=6% Similarity=-0.047 Sum_probs=148.7
Q ss_pred CeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...++++++++++++ +. .++.|.+||..+..... ....+...+.++++++++ +++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--------LPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--------CCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--------EeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence 678999999999877 54 68999999976443211 001223457889999998 6666555 889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
...... .+.. .....+..++++++|+++++... +.|.+|+... .... ......
T Consensus 95 ~~~~~~-----~~~~-----------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~--~~~~~~------- 148 (270)
T 1rwi_B 95 GSNNQT-----VLPF-----------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQT--VLPFTG------- 148 (270)
T ss_dssp TCSCCE-----ECCC-----------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCE--ECCCCS-------
T ss_pred CCceEe-----eeec-----------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeE--eecccc-------
Confidence 654321 1110 11135789999999997777554 8999996543 2211 111110
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
......++++++|+++++...++.|.+|+..... .......+...+..+++.+++..+++...++.|.+++..
T Consensus 149 ------~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 149 ------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp ------CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred ------CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc-eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 0112379999999988887788999999987653 222222333667899999999888887778888773322
Q ss_pred CCCccccCCccccccCCeeEEEEcCCCCEEEEEc-CCcEEEEe
Q 010206 473 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 514 (515)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~-~~~~~i~~ 514 (515)
... ...........+..++++|+|+++++.. ++.+.+|.
T Consensus 222 ~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 111 0001111235689999999998766655 45566664
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-11 Score=110.83 Aligned_cols=159 Identities=8% Similarity=0.112 Sum_probs=101.5
Q ss_pred CCeEEEEecCCCCEEEEe-CC---------------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEe----cC
Q 010206 235 YHINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PT 294 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~----p~ 294 (515)
..+.+++++++++++++. .+ +.|..||.. ++ .. .+..+......++++ |+
T Consensus 117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~--------~~~~~~~~~~~i~~~~~~d~d 186 (314)
T 1pjx_A 117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MI--------QVDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EE--------EEEEEESSEEEEEEEECTTSC
T ss_pred cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EE--------EeccCCCCcceEEEecccCCC
Confidence 346788888988887776 44 567667654 22 21 111233456889999 99
Q ss_pred CCcEEE-EEecCCeEEEEecC-cccccccccceeeeccCCCccccccccc-cceeEEEEccCCCEEEEEc-CCeEEEEEe
Q 010206 295 HCNMLA-YSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRD-YMTLKLWDI 370 (515)
Q Consensus 295 ~~~~l~-~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~-~~~i~iwd~ 370 (515)
+ +.++ +...++.|.+||+. ++.... ...+.. +.++. ..+..++++++|+++++.. .+.|.+||.
T Consensus 187 g-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 187 P-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp E-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred C-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 8 5554 44568899999986 332110 011110 11122 3467899999999888764 489999998
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCC
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~ 431 (515)
.+ ++.+..+..+... +.+++|+++++.| ++...++.|..|++...
T Consensus 255 ~~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 255 DG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CC-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 74 5555555433221 4589999999954 55566789999998754
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-11 Score=108.35 Aligned_cols=232 Identities=9% Similarity=-0.014 Sum_probs=145.8
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
....+.+. +++.+++. .++.|.+||..+.+....+ . ....+..+++++++ +++++...++.|.+||..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~ 113 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPK 113 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETT
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECC
Confidence 34566664 34455555 6899999999987654322 1 24567899999998 666665589999999998
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--CCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
+++... .+..... .+.......+++ .+++++++.. ++.|.++|+.+ ++.+.++......
T Consensus 114 t~~~~~----~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p------ 174 (328)
T 3dsm_A 114 TYEITG----YIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP------ 174 (328)
T ss_dssp TTEEEE----EEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB------
T ss_pred CCeEEE----EEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc------
Confidence 876532 1221110 000113455666 4454444442 48999999986 6666555432211
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCC----------CcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCeeEeec
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS 461 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~d----------g~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 461 (515)
..++++|+|++++++..+ +.|.++|..++ .+...+... ......++++|+++.|..+.
T Consensus 175 ----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 175 ----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp ----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred ----------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 278999999988877655 78999999876 343444332 23678999999999887776
Q ss_pred CCCeEEEecC--CCCCccccCCccccc-cCCeeEEEEcCCCCEEEEEc------CCcEEEEe
Q 010206 462 LSGVVRRVKG--ADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA------SNSLYMYY 514 (515)
Q Consensus 462 ~d~~v~l~~~--~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~------~~~~~i~~ 514 (515)
. .|.+++. .+... ...... ......++++|++..|.++. .+.+.+|+
T Consensus 244 ~--~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp S--SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred c--EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 5 5555332 22211 011111 35688999999655555443 45577775
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=107.01 Aligned_cols=195 Identities=13% Similarity=0.027 Sum_probs=123.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd 312 (515)
..+..++++++++.+++. .++.|.+||+.+.+....+ ... ...+.......+++ .++ .++++.. .++.|.++|
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i-~~g--~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI-ECP--DMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKID 158 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE-ECT--TCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE-EcC--CccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEE
Confidence 345678888888666666 6899999999876543221 110 00011124556777 344 5555544 489999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C----------CeEEEEEeeCCCCCeeeEe
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y----------MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~----------~~i~iwd~~~~~~~~~~~~ 381 (515)
+.+++... .+... .....+.++|+|++++++. + +.|.++|..+ ++....+.
T Consensus 159 ~~t~~~~~----~i~~g-------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~ 220 (328)
T 3dsm_A 159 TETDKVVD----ELTIG-------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFK 220 (328)
T ss_dssp TTTTEEEE----EEECS-------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEE
T ss_pred CCCCeEEE----EEEcC-------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC-CeEEEEEe
Confidence 99876532 12211 2346788999999777753 2 5899999875 55555554
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceee-eccCCCceeeEEECC-CCCeeEe
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT-LEASKNPMRRQVQTP-SRPSRPL 459 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s 459 (515)
...... ...++|+|++++|+.+.. .|.+||..+++..... +.........++++| ++..+++
T Consensus 221 ~~~g~~--------------p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 221 FKLGDW--------------PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CCTTCC--------------CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred cCCCCC--------------ceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 321110 238999999999887655 8999999876432111 222245678899999 5555566
Q ss_pred e----cCCCeEEE
Q 010206 460 G----SLSGVVRR 468 (515)
Q Consensus 460 ~----~~d~~v~l 468 (515)
. ..++.|.+
T Consensus 285 ~~~~y~~~~~V~v 297 (328)
T 3dsm_A 285 DAIDYQQQGIVYR 297 (328)
T ss_dssp ECTTSSSEEEEEE
T ss_pred cccccccCCEEEE
Confidence 5 55677776
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-10 Score=99.55 Aligned_cols=234 Identities=4% Similarity=-0.050 Sum_probs=151.8
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+.++++++++.++++. .++.|..+|.. ++.. . . .+......+.++++.+++ +++++...++.|..||.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~-~-----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E-Y-----PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E-E-----ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E-e-----cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECC
Confidence 457788999999988877 58889999987 4321 1 1 112234668999999998 77777766889999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
. ++.. .+... .....+..+++.++|++.++... +.|..+|.. ++.. .+.....
T Consensus 133 ~-g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~-~~~~~~~------- 186 (300)
T 2qc5_A 133 D-GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLE-EYPLPTN------- 186 (300)
T ss_dssp T-SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEE-EEECSST-------
T ss_pred C-CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEE-EeeCCCC-------
Confidence 6 4421 11111 11245789999999997766654 789998873 4332 2221111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 472 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~ 472 (515)
...+..++++++|++.++....+.|.+|+. ++......+..+...+..+++.+++...++...++.|..++..
T Consensus 187 ------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 187 ------AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ------CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 111348999999998887777788999998 4433323334455667899999999877777666777663321
Q ss_pred CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 473 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 473 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... ...........+.+++++++|++.++.. +++..|+
T Consensus 260 g~~---~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 260 NTI---QEYQLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp SCE---EEEECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CcE---EEEECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 111 0000111235688999999998666655 3777664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=126.63 Aligned_cols=160 Identities=9% Similarity=0.017 Sum_probs=95.4
Q ss_pred CCeEEEEecCCCCEEEEe-CC-----CcEEEEeCCCCCcc-cceecccCccccccCCceEEEEEecCCCcEEEEEec---
Q 010206 235 YHINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--- 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--- 304 (515)
..+..+.|+|||++|+.. .+ ..|++||+.++... .. .+..+...+... ++|++ ..|+..+.
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~-~~~dg-~~l~~~s~~~~ 338 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDF-VDGVG-DQLWFVSGDGA 338 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEE-EEEET-TEEEEEECTTC
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEE-EeccC-CEEEEEECCCC
Confidence 457889999999988875 33 38999999765211 11 222333344444 34887 66666655
Q ss_pred -CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEee
Q 010206 305 -KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 305 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~ 382 (515)
++.|.+||+.++. .. ...+ +..+...+..+.++ ++.++++.. ++..+||.+...++....+..
T Consensus 339 ~~~~l~~~d~~~~~--~~-~~~l-----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 403 (741)
T 1yr2_A 339 PLKKIVRVDLSGST--PR-FDTV-----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL 403 (741)
T ss_dssp TTCEEEEEECSSSS--CE-EEEE-----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC
T ss_pred CCCEEEEEeCCCCc--cc-cEEE-----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC
Confidence 3459999987642 00 0111 12222346677777 455666654 477777766533444444432
Q ss_pred eccccccccccccCCCccceeeEEEcCCCCEEE----EecCCCcEEEEecCCCC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA----TGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~s~dg~i~iw~~~~~~ 432 (515)
+... .+..+.++|+++.|+ +....++|++||+.+++
T Consensus 404 ~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 404 PGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2110 134788999988665 33456899999998763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=103.50 Aligned_cols=218 Identities=7% Similarity=-0.027 Sum_probs=144.8
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccC-CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.+++|+++ .++.|.+||.++++...+ +..+. ..+.++.+.|+| ++++ +.++.|..||. +++.+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------YPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWN- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--------EECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--------eCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEE-
Confidence 45677887 799999999988876543 23333 467899999999 7877 45788999998 7765432
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCcc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 400 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
+... ....+.++.+.++|+++++... +.|..+|. .++.+..+......... ..
T Consensus 71 ---~~~~-----------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~---------~~ 125 (276)
T 3no2_A 71 ---IAAP-----------AGCEMQTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERP---------HA 125 (276)
T ss_dssp ---EECC-----------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSG---------GG
T ss_pred ---EcCC-----------CCccccccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcc---------cc
Confidence 2211 1135778899999999998543 55655554 47777666543221000 00
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ec-CCCCCcc
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK-GADNSAL 477 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~-~~~~~~~ 477 (515)
....+++.++|++|++...++.|..||.+ + +++.++.... .+..+...+++.++++++.++.|.. .+ +...+.
T Consensus 126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~- 201 (276)
T 3no2_A 126 QFRQINKNKKGNYLVPLFATSEVREIAPN-G-QLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR- 201 (276)
T ss_dssp SCSCCEECTTSCEEEEETTTTEEEEECTT-S-CEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE-
T ss_pred cccCceECCCCCEEEEecCCCEEEEECCC-C-CEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE-
Confidence 12256789999999999999999999987 6 5556665543 4456778899999998888877666 22 333332
Q ss_pred ccCCcccc--ccCCeeEEEEcCCCCEEEEE
Q 010206 478 DANGNAFD--FSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 478 ~~~~~~~~--~~~~i~~~~~s~~~~~la~~ 505 (515)
+...... .-..+..++..++|+.+++.
T Consensus 202 -~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 202 -VNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -EEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -ecCCCCCCccccccccceEcCCCCEEEEe
Confidence 1100000 11236788888888888876
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-11 Score=108.39 Aligned_cols=281 Identities=9% Similarity=0.010 Sum_probs=169.1
Q ss_pred ecCCCcEEEeeeC-----CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 122 QSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 122 ~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
|.+++..++++.. ++.|.+.|..+++..........+ .++++|||+.+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-----------------~va~spDG~~l---------- 92 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFI---------- 92 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE----------
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-----------------cEEECCCCCEE----------
Confidence 3566777887754 689999999999877766544322 57999999988
Q ss_pred CCCCCC----------CcccEEeeeeeecccccccccceeeeeecc------CcCCeEEEEecCCCCEEEEe--C-CCcE
Q 010206 197 SSFPPG----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA--D-DLRI 257 (515)
Q Consensus 197 ~~~~~~----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~--~-d~~i 257 (515)
+.++ .++.|.+|| ....+. .....-+ .......++|+|||+++.++ . ++.|
T Consensus 93 --yVan~~~~r~~~G~~~~~VsviD--~~t~~v------~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 93 --AHASTVFSRIARGERTDYVEVFD--PVTLLP------TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp --EEEEEEEEETTEEEEEEEEEEEC--TTTCCE------EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred --EEEcccccccccCCCCCEEEEEE--CCCCeE------EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 4443 357899998 333221 1111111 11245679999999998876 3 6899
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 336 (515)
.++|+.+.+....+ ... + +..+.|.+.+.+++.+.||.+.+.++.. ++........+..
T Consensus 163 sVID~~t~~vv~tI------~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~-------- 222 (386)
T 3sjl_D 163 GVVDLEGKAFKRML------DVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------- 222 (386)
T ss_dssp EEEETTTTEEEEEE------ECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------
T ss_pred EEEECCCCcEEEEE------ECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecc--------
Confidence 99999987654322 111 1 1123354446777888899999999876 4432110011110
Q ss_pred ccccccccee-EEEEc-cCCCEEEEEcCCeEEEEEeeCCC-CCeeeEeeecc--ccccccccccCCCccceeeEEEcCCC
Q 010206 337 FFTEIIASIS-DIKFA-RNGRHILSRDYMTLKLWDINMDS-GPVATFQVHEH--LRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 337 ~~~~~~~~i~-~~~~s-~~~~~l~s~~~~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
-..++. ...|. ++|++++...+|+|.+.|+.... +....+..-.. ..... .......+++++++
T Consensus 223 ----~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~-------~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 223 ----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-------RPGGWQQVAYHRAL 291 (386)
T ss_dssp ----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-------EECSSSCEEEETTT
T ss_pred ----ccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccc-------cCCCcceeeECCCC
Confidence 001121 23554 68877776666999999987421 12222220000 00000 00001257889999
Q ss_pred CEEEEecC----------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEe-ecCCCeEEEecCC
Q 010206 412 GRVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPL-GSLSGVVRRVKGA 472 (515)
Q Consensus 412 ~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~d~~v~l~~~~ 472 (515)
+.|+.... .+.|.+.|+++++ .+..+..- .++..++++++++ .|++ ...++.|.+++..
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k-v~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGE-RLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCe-EEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 98887643 3579999999884 43444322 2677999999997 5555 4558999985433
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-11 Score=124.29 Aligned_cols=237 Identities=11% Similarity=0.074 Sum_probs=144.3
Q ss_pred CcCCeEEEEecCCCCEEEEe-C-C----CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 233 HDYHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
|...+..++|+|||++|+.+ + + ..|++||+.+++.... ..+...+..++|+|| . .|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------~~~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------ELKWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------EEEEEESCCCEESTT-S-EEEEEECCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------cCCCceeccEEEECC-C-EEEEEEecC
Confidence 33467789999999999986 3 3 3599999997764311 111112357889999 4 455555443
Q ss_pred --------------eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-----CeEE
Q 010206 307 --------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLK 366 (515)
Q Consensus 307 --------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-----~~i~ 366 (515)
.|++|++.++..... ..+.. ..+...+..+.|||||++|+... + ..|+
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFAT----------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE--EEECC----------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE--EEecc----------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 388899876542111 11221 11223478899999999888743 2 4899
Q ss_pred EEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----CCcEEEEecCCCC-cceeeecc
Q 010206 367 LWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGS-AESTTLEA 440 (515)
Q Consensus 367 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~----dg~i~iw~~~~~~-~~~~~~~~ 440 (515)
+||+..+. +....+..+... +... ++|+|+.|+..+. ++.|.+||+.++. .....+..
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~---------------~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKA---------------QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp EEEEETTEECCCEEEECSSSS---------------CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred EEECCCCCCcccEEecCCCCc---------------eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 99998521 214444433321 1133 4589998887765 3459999998642 33334455
Q ss_pred CCCceeeEEECCCCCeeEeecCCCeEEE--ec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEE
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 511 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~ 511 (515)
+...+..+.+. ++.++++...|+..+| ++ +.... .+. ......+..++++|+++.|+.... ..++
T Consensus 362 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 362 SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AVS---LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--ECB---CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ecc---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 55566667776 6677888888998877 22 22111 111 112467889999999987774322 3466
Q ss_pred EEe
Q 010206 512 MYY 514 (515)
Q Consensus 512 i~~ 514 (515)
+|+
T Consensus 436 ~~d 438 (741)
T 1yr2_A 436 ALD 438 (741)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-10 Score=102.63 Aligned_cols=314 Identities=9% Similarity=0.017 Sum_probs=176.2
Q ss_pred EEEECCCCCeEEeecC-----CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 40 AIEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
.....|+++.+.+... ++.|.+.|..+.+.. ..+..-. .+
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----------------------~~I~vG~------------~P 81 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF------------LP 81 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----------------------EEEECCC------------CC
Confidence 3566799998888765 679999998877643 2222211 22
Q ss_pred eEEEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 115 INKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
. +++ ++++++++++. .++.|.+||..+.+............ ......+..++++|||+
T Consensus 82 -~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 82 -N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp -E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSS
T ss_pred -c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCC
Confidence 3 888 56788888775 36789999999998776654321000 00001112789999999
Q ss_pred ccccccccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-eCCCcEEEEe
Q 010206 185 CGERNFGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-ADDLRINLWN 261 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~d~~i~iwd 261 (515)
.+ +.+. .++.+.++| ....+. ....... .. ...+....+.+++ +.||++.+.+
T Consensus 150 ~l------------yVan~~~~~~VsVID--~~t~~v------v~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~ 205 (386)
T 3sjl_D 150 TL------------LFYQFSPAPAVGVVD--LEGKAF------KRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVA 205 (386)
T ss_dssp EE------------EEEECSSSCEEEEEE--TTTTEE------EEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEE
T ss_pred EE------------EEEEcCCCCeEEEEE--CCCCcE------EEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEE
Confidence 88 5443 367899988 333221 1111000 01 1112222334444 3677777777
Q ss_pred CCCCCcccceecccCccccccCCceE-EEEEe-cCCCcEEEEEecCCeEEEEecCccccc-ccccceeeeccCCCccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFF 338 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 338 (515)
+.+........ ...+.....++. ...|. ++| ++++ .+.+|.+.+.|+.+.... ......+..... ..
T Consensus 206 ~~~~g~v~~~~---~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~-----~~ 275 (386)
T 3sjl_D 206 FGTEGTPEITH---TEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAER-----AD 275 (386)
T ss_dssp CCSSSCCEEEE---CCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHH-----HT
T ss_pred CCCCCeEEEee---cceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccc-----cc
Confidence 76522221100 001111112221 23564 566 4444 666899999999765421 111110110000 00
Q ss_pred cccccceeEEEEccCCCEEEEEc----------C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 339 TEIIASISDIKFARNGRHILSRD----------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~----------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.........++++++++.++... . +.|.+.|+.+ .+.+.++..... ++++++
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~----------------~~~lav 338 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE----------------IDSINV 338 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE----------------ECEEEE
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCC----------------cceEEE
Confidence 00113445678899988888742 1 5799999987 788887765432 248999
Q ss_pred cCCCC-EEEE-ecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC
Q 010206 408 SGDGG-RVAT-GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 408 s~~~~-~l~s-~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~ 453 (515)
++|++ +|++ ...++.|.++|..+++ .+.+++.-. ..+.+.+++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCC-SSCCEEEECC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCc-EEEEecCCC-CCceeEECCc
Confidence 99997 6665 4568999999999874 444444322 2224555554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-10 Score=100.67 Aligned_cols=242 Identities=7% Similarity=0.032 Sum_probs=148.0
Q ss_pred cCCeEEEEecCCCCEEEE-------e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC-CCcEEEEEec
Q 010206 234 DYHINSISNNSDGETFIS-------A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSS 304 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s-------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~-~~~~l~~~~~ 304 (515)
-....+++|++++.++++ + .++.|..||..+++.. .+. . ....++...+.+++++++ + +++++ +.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~-~--~~~~~~~~~~~~i~~~~~~g-~l~v~-~~ 90 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VIC-K--PEVNGYGGIPAGCQCDRDAN-QLFVA-DM 90 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEE-C--CEETTEECCEEEEEECSSSS-EEEEE-ET
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEE-e--cccCCCCCCCceEEEecCCC-cEEEE-EC
Confidence 346789999999999988 5 6889999998765432 110 0 011224567899999999 6 55554 44
Q ss_pred CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCC--------------eEEEEEe
Q 010206 305 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM--------------TLKLWDI 370 (515)
Q Consensus 305 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~--------------~i~iwd~ 370 (515)
.+.|.+||.. ++..... ..... ......+.+++++++|+++++.... ...||.+
T Consensus 91 ~~~l~~~d~~-g~~~~~~---~~~~~--------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIA---KKDSE--------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp TTEEEEEETT-SCEEECC---SBCTT--------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCCEEEEeCC-CCEEEEE---eccCC--------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 4578899987 5431100 00000 0111357899999999888775431 1344444
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEc----CCCCEEE-EecCCCcEEEEecC-CCCc----ceeeecc
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS----GDGGRVA-TGSYSNLFRVFGCS-EGSA----ESTTLEA 440 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~-s~s~dg~i~iw~~~-~~~~----~~~~~~~ 440 (515)
...++ ...+..+... ...++|+ |+++.|+ +...++.|.+|++. ++.. ....+..
T Consensus 159 ~~~g~-~~~~~~~~~~---------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 159 TTDGQ-MIQVDTAFQF---------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp CTTSC-EEEEEEEESS---------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred CCCCC-EEEeccCCCC---------------cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence 43233 2222221111 2378999 9997654 44678899999986 3311 1123334
Q ss_pred CC-CceeeEEECCCCCeeEeecCCCeEEEecCC--CCCccccCCccccccCCeeEEEEcCCCCEEEEEcCC--cEEEEe
Q 010206 441 SK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN--SLYMYY 514 (515)
Q Consensus 441 ~~-~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~--~~~i~~ 514 (515)
+. ..+..+++.++|.++++...++.|.+++-. +.. .....+...+.+++|+|+++.|.+++.+ ++..|.
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 43 557789999999988887677777763321 111 1111234678999999999977766654 787775
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-10 Score=99.79 Aligned_cols=232 Identities=8% Similarity=0.087 Sum_probs=144.0
Q ss_pred ceEEEEECCC-CCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 37 IISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 37 ~v~~v~~s~~-g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
--.+..|+|+ +.++++...++.|..||..+++.. .+. .. ..+
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~~-~~------------~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RVT-MD------------APV 56 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EEE-CS------------SCE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EEe-CC------------Cce
Confidence 4468899995 556667777889999998765421 111 11 558
Q ss_pred EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.++++ .+++. |+++. ++.|.+||..+++.........
T Consensus 57 ~~i~~--~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~--------------------------------------- 93 (297)
T 3g4e_A 57 SSVAL--RQSGG-YVATI-GTKFCALNWKEQSAVVLATVDN--------------------------------------- 93 (297)
T ss_dssp EEEEE--BTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCT---------------------------------------
T ss_pred EEEEE--CCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCC---------------------------------------
Confidence 89999 55666 44444 5679999998876543322110
Q ss_pred CCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC---------CcEEEEeCCCC
Q 010206 196 DSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEIS 265 (515)
Q Consensus 196 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~ 265 (515)
......+++++++|+|+++++. .. ..-.+|.+...
T Consensus 94 -----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 94 -----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp -----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred -----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence 0011346788899999877764 22 23455555432
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec--CcccccccccceeeeccCCCcccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (515)
..... +.........++|+|++..++++.+.++.|.+||+ .++.+.. .+.+.. +..+..
T Consensus 139 g~~~~--------~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~ 199 (297)
T 3g4e_A 139 HHVKK--------YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQ 199 (297)
T ss_dssp SCEEE--------EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGC
T ss_pred CCEEE--------EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCC
Confidence 22211 12233456899999998334456666889999997 3443211 011110 111224
Q ss_pred ceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc-CCCCEEEEec
Q 010206 344 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 418 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s 418 (515)
....++++++|++.++... +.|..||..+ ++.+..+..+... +++++|. |+++.|+..+
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEE
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEc
Confidence 5788999999988777655 8899999875 7777777655322 4589998 8888766544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-08 Score=94.25 Aligned_cols=294 Identities=7% Similarity=-0.007 Sum_probs=165.4
Q ss_pred EECCCCCeEEeecC--CC---eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 42 ~~s~~g~~lasg~~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
...|+++++.+... .+ .|.+||..+++.. ..+.... .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~p-- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------LP-- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------CC--
Confidence 44578887777653 22 7899998876632 2222111 22
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+++ ++++++++++. .++.|.+||..+.+.............. .+ ..+..++++|||+.+
T Consensus 70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g------~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VG------PYSWMNANTPNNADL 139 (373)
T ss_pred CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--cC------CCccceEECCCCCEE
Confidence 7888 56777888875 3678999999987765544332000000 00 011278999999998
Q ss_pred ccccccCCCCCCCCCCC--cccEEeeeeeecccccccccceeee-eeccCcCCeEEEEecCCCC-EEEEe-CCCcEEEEe
Q 010206 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWN 261 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd 261 (515)
+.++. ++.|.++| +.. +.... . ... .++.+.|+++ .+++. .||.+.++|
T Consensus 140 ------------~v~n~~~~~~v~viD------~t~---~~~~~~i--~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV------QGG---SSDDQLL--SSP---TCYHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred ------------EEEecCCCCeEEEEE------CCC---CEEeEEc--CCC---ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence 55442 45666543 111 11111 1 011 1244555554 33343 799999999
Q ss_pred CCCCCcccceecccCccccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccc
Q 010206 262 LEISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 340 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
. +++.... ....+ .+ ....+ .....+.+++ ..++..+..+.+.+.|+....... ...++........ ...
T Consensus 194 ~-~g~~~~~-~~~~~-~~-~~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~~--~~~ 264 (373)
T 2mad_H 194 H-AGGAAGA-GLVGA-ML-TAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRKA--DTW 264 (373)
T ss_pred C-CCcEEEE-Eeccc-cc-cCCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCcccc--cce
Confidence 9 6654311 10000 01 11122 2235567776 343434477899999987543210 1112111000000 000
Q ss_pred cccceeEEEEccCCCEEEEEc-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcC
Q 010206 341 IIASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 341 ~~~~i~~~~~s~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.......+.++|+++.++... .+.|.++|+.+ .+.+.++...... ..++|+|
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~ 327 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQ 327 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECC
Confidence 112345578999988877742 15799999986 7777777543321 3899999
Q ss_pred CCC-EEEEec-CCCcEEEEecCCCCcc
Q 010206 410 DGG-RVATGS-YSNLFRVFGCSEGSAE 434 (515)
Q Consensus 410 ~~~-~l~s~s-~dg~i~iw~~~~~~~~ 434 (515)
||+ +++++. .++.|.+||+.+++..
T Consensus 328 Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 328 DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 999 777776 5899999999987433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-09 Score=98.90 Aligned_cols=232 Identities=10% Similarity=0.029 Sum_probs=142.8
Q ss_pred cCcCCeEEEEecCCCC-EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 232 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
..........|+|+++ ++++. .++.|..|+.. ++. . .+..+...+..++++++| +++++...++.|.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~--~-------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV--D-------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAIT 110 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE--E-------EEEESCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE--E-------EEeCCCCccceeeECCCC-CEEEEECCCCEEE
Confidence 3445667899999998 45555 68999999874 331 1 223345678999999998 7776656668899
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE----Ec--------------CCeEEEEEee
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDIN 371 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s----~~--------------~~~i~iwd~~ 371 (515)
+|+.. ++. ..+..... ......+..++++|+|+++++ |. .+.|..||..
T Consensus 111 ~~~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 111 RSDAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EECTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EECCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 99975 432 11111000 001134678999999998886 32 1345556554
Q ss_pred CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC------CcEEEEecCCCCcce--eee-ccCC
Q 010206 372 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TTL-EASK 442 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d------g~i~iw~~~~~~~~~--~~~-~~~~ 442 (515)
+ ++.. .+. .... ...++|+||++.|+.+... +.|++|++..+. +. ..+ ....
T Consensus 178 ~-g~~~-~~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~ 238 (305)
T 3dr2_A 178 G-SPLQ-RMA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPD 238 (305)
T ss_dssp S-CCCE-EEE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSS
T ss_pred C-CcEE-EEe-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCC
Confidence 3 3332 222 1111 2378999999987766554 789999987543 21 111 1123
Q ss_pred CceeeEEECCCCCeeEeecCCCeEEEecC-CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 443 NPMRRQVQTPSRPSRPLGSLSGVVRRVKG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 443 ~~v~~~~~~~~~~~l~s~~~d~~v~l~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.....+++.++|.+.++ +.++ |.+++- .+.. ..+.....+..++|+|+++.|.+++.++++-+.
T Consensus 239 ~~pdgi~~d~~G~lwv~-~~~g-v~~~~~~g~~~------~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 239 GLPDGFCVDRGGWLWSS-SGTG-VCVFDSDGQLL------GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCCCSEEECTTSCEEEC-CSSE-EEEECTTSCEE------EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCCeEEECCCCCEEEe-cCCc-EEEECCCCCEE------EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 34567899999985444 4555 444221 1111 011122358899999999999998888887664
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2e-09 Score=96.97 Aligned_cols=228 Identities=10% Similarity=0.007 Sum_probs=140.7
Q ss_pred CcCCeEEEEecCCCCEE-EEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 233 HDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
+..-..+..|++++..| ++. .++.|..||..+.... . ......+.+++++|++ +++++ . ++.|.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~--------~~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~ 77 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--R--------VTMDAPVSSVALRQSG-GYVAT-I-GTKFCA 77 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--E--------EECSSCEEEEEEBTTS-SEEEE-E-TTEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--E--------EeCCCceEEEEECCCC-CEEEE-E-CCeEEE
Confidence 33455688999965554 455 6899999999865431 1 1134678999999999 65554 3 678999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----------CCeEEEEEeeCCCCCeeeE
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----------YMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----------~~~i~iwd~~~~~~~~~~~ 380 (515)
||..+++.. .+...... .....+..++++|+|+++++.. ...-.||.+...++ +..+
T Consensus 78 ~d~~~g~~~-----~~~~~~~~-------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~ 144 (297)
T 3g4e_A 78 LNWKEQSAV-----VLATVDND-------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKY 144 (297)
T ss_dssp EETTTTEEE-----EEEECCTT-------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEE
T ss_pred EECCCCcEE-----EEEecCCC-------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEE
Confidence 999876531 11111000 0113578899999999777532 12346776664233 2222
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecC--CCCcc----eeeeccCCCceeeEEECCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCS--EGSAE----STTLEASKNPMRRQVQTPS 453 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~--~~~~~----~~~~~~~~~~v~~~~~~~~ 453 (515)
...... ...++|+||++.| ++.+.++.|.+|++. ++... ...+..+......+++.++
T Consensus 145 ~~~~~~---------------pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 145 FDQVDI---------------SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE 209 (297)
T ss_dssp EEEESB---------------EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred eecccc---------------ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence 222111 2379999999876 456678899999873 44211 1222333456678999999
Q ss_pred CCeeEeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEc-CCCCEEEEEc
Q 010206 454 RPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 506 (515)
Q Consensus 454 ~~~l~s~~~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~ 506 (515)
|.+.++...++.|..++- .+.. .........+++++|. ||++.|.+++
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~-----~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRL-----QTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEE-----EEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEcCCCceEE-----EEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 987777766776766321 1211 1111124678999998 8998887655
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-09 Score=101.71 Aligned_cols=295 Identities=7% Similarity=0.014 Sum_probs=166.6
Q ss_pred CCCCeEEeecCC-----CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 45 ~~g~~lasg~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
++++.+++.... +.|.++|..+.+.+ ..+..-. .+ .+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 577766665442 69999999877643 2222111 23 788
Q ss_pred EeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 120 ~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+ ++++++++++. .++.|.++|..+.+............... ...+..+.++|||+.+
T Consensus 125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~--------g~~P~~~~~spDGk~l--- 191 (426)
T 3c75_H 125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV--------GTYQWMNALTPDNKNL--- 191 (426)
T ss_dssp E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB--------SCCGGGSEECTTSSEE---
T ss_pred E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc--------CCCcceEEEcCCCCEE---
Confidence 8 56777888875 46789999999988776554320000000 0011178999999998
Q ss_pred cccCCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCC-CEEEEe-CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.+. .++.|.+.| ....+. ...+..+. +....|++ ..+++. .||.+.+.+..+.
T Consensus 192 ---------yV~n~~~~~~VsVID--~~t~kv------v~~I~v~g-----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 192 ---------LFYQFSPAPAVGVVD--LEGKTF------DRMLDVPD-----CYHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp ---------EEEECSSSCEEEEEE--TTTTEE------EEEEECCS-----EEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred ---------EEEecCCCCeEEEEE--CCCCeE------EEEEEcCC-----ceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 5543 257888888 332221 11111111 11222322 333333 6777777776433
Q ss_pred CcccceecccCccccccCCce-EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc
Q 010206 266 NQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i-~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+.... .. ..+.....++ ..+.+.+++ ..++.....+.+.+.|+....... ...+....... .........
T Consensus 250 ~v~~~-~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~--i~~g~~p~g 320 (426)
T 3c75_H 250 ETKVT-NT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAE--RADDWRPGG 320 (426)
T ss_dssp CCEEE-EC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTT--GGGTEEECS
T ss_pred cEEEE-ee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccc--cccccccCC
Confidence 22110 00 0011011111 235678888 555556778899999986543211 11111100000 000001122
Q ss_pred eeEEEEccCCCEEEEEc-----------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-
Q 010206 345 ISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG- 412 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 412 (515)
...++++|+++.++... .+.|.+.|+.+ .+.+.++...... ..++|+|||+
T Consensus 321 ~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~ 383 (426)
T 3c75_H 321 WQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEP 383 (426)
T ss_dssp SSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSC
T ss_pred ceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCE
Confidence 33468999988777642 15799999997 8888888654422 3899999999
Q ss_pred EEEEec-CCCcEEEEecCCCCcceeee
Q 010206 413 RVATGS-YSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 413 ~l~s~s-~dg~i~iw~~~~~~~~~~~~ 438 (515)
++++.. .++.|.++|+.+++ .+.++
T Consensus 384 ~lyv~n~~s~~VsVID~~t~k-vv~tI 409 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATGE-ELRSV 409 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence 888777 59999999999884 43444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-09 Score=100.07 Aligned_cols=268 Identities=11% Similarity=0.111 Sum_probs=154.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
.....|+| ++++.++++...++.|++||..++.+........ .+ .++++++++.+
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~----------------~~-~ia~~~~g~~l------ 185 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK----------------GG-KPAVTKDKQRV------ 185 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC----------------BC-BCEECTTSSEE------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC----------------CC-ceeEecCCCcE------
Confidence 35778999 5667666666777999999999887766544321 11 36888999876
Q ss_pred CCCCCCCCCCCcc--cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVS--SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+.+..++ .|.+++ ... . ................+.+++++|++..|..+ .++.|+.||..+....
T Consensus 186 ------~~~d~~~~~~I~~~d--~~~--~-~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~- 253 (409)
T 3hrp_A 186 ------YSIGWEGTHTVYVYM--KAS--G-WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT- 253 (409)
T ss_dssp ------EEEBSSTTCEEEEEE--GGG--T-TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-
T ss_pred ------EEEecCCCceEEEEE--cCC--C-ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-
Confidence 5555544 566655 211 1 11001101001144667889999954445446 6889999999865421
Q ss_pred ceecccCccccccCCce-E-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc-CCCcc--ccccccccc
Q 010206 270 NIVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIAS 344 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i-~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 344 (515)
++... ...++...- . .++|+|++..++++-..++.|+.|+..... ..+.... ..... ......-..
T Consensus 254 -~~~~~--~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 254 -LIKQL--ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp -EEEEC--CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSS
T ss_pred -EEecc--cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCC
Confidence 11000 011122221 3 999999643777777778999999975431 1111111 00000 000001134
Q ss_pred eeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCc
Q 010206 345 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 422 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~ 422 (515)
...++++|+|+++++-. . +.|+.|++.. + .+.++.++...............+.....++++++|.++++-..+++
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~-G-~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~ 402 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILD-G-YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKA 402 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTT-T-EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCE
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCC-C-EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCe
Confidence 78999999999777766 5 8999999753 3 35555554211100000000111223458999999988888888889
Q ss_pred EEEEec
Q 010206 423 FRVFGC 428 (515)
Q Consensus 423 i~iw~~ 428 (515)
|+.+++
T Consensus 403 Ir~i~~ 408 (409)
T 3hrp_A 403 IRKYAV 408 (409)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 988775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.5e-10 Score=101.66 Aligned_cols=271 Identities=7% Similarity=0.003 Sum_probs=157.9
Q ss_pred cceEEEEECCCCCeEEeec--CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ |... .....|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----PF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----ES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----cC----------CCcc--cCcccce------------e
Confidence 5789999999999988853 2343667776533211 00 0000 0011222 5
Q ss_pred eeEEEEEeecCCCcEEEeeeC-----CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
.+..+++ ++++.++++-.. ++.|.+||+.+++..........
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 6899999 556655554333 57899999998875444332100
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe----CCCcEEEEeCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA----DDLRINLWNLE 263 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~----~d~~i~iwd~~ 263 (515)
...+...+..+++++++..+ ++. .++.|.+||+.
T Consensus 115 -----------------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~ 153 (343)
T 2qe8_A 115 -----------------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ 153 (343)
T ss_dssp -----------------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT
T ss_pred -----------------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC
Confidence 00122345678888764444 442 36889999998
Q ss_pred CCCcccceecccCccccccCCceE-EEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccc
Q 010206 264 ISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+++.. .+ +.+|..... ...+.+++ ..+.+.+.++.++.|..
T Consensus 154 ~g~~~-r~-------~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~~----------------------------- 195 (343)
T 2qe8_A 154 TGLAA-RV-------LQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPHL----------------------------- 195 (343)
T ss_dssp TCCEE-EE-------CTTCTTTSCCSCCCEETT-EECBEECTTSCEECCCC-----------------------------
T ss_pred CCCEE-EE-------ecCCCcccccccceeECC-EEEEeccCCCceeceec-----------------------------
Confidence 65432 21 122211100 13455566 66777777777765531
Q ss_pred cceeEEEEccCCCEEEEEcC--CeEEEEEeeC--CCCC-----ee--eEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 343 ASISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 343 ~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+..++|+|+|+.|+.++. ..+..++... .... .. ...++... ...++++++|
T Consensus 196 -~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G 259 (343)
T 2qe8_A 196 -GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDH 259 (343)
T ss_dssp -CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTC
T ss_pred -ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCC
Confidence 2578999999998888754 4555444321 0110 00 11111111 1279999999
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeec-cCCCceeeEEECCCCCeeEeecCCC
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSG 464 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~ 464 (515)
+++++...++.|.+||.+++ ....... .+...+..+++.+++.++++.+..+
T Consensus 260 ~l~va~~~~~~V~~~d~~~G-~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 260 NIYVGDLAHSAIGVITSADR-AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CEEEEEGGGTEEEEEETTTT-EEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred CEEEEccCCCeEEEEECCCC-CEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 99999999999999998555 2322222 1245578999999988777765443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-09 Score=98.43 Aligned_cols=232 Identities=12% Similarity=0.044 Sum_probs=141.8
Q ss_pred ccccceEEEEECCCCC-eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~-~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 4556678899999998 66777788999999873 321 1122222
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..++.+++ +++++++++...++.|.+|+.. ++.........
T Consensus 86 -~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------------- 126 (305)
T 3dr2_A 86 -AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------------- 126 (305)
T ss_dssp -SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------------
T ss_pred -CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------------
Confidence 45888999 5667655555556789999875 44322211000
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE----e-C-------------
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D------------- 253 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~-~------------- 253 (515)
......+++++++++|+++++ | .
T Consensus 127 ---------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 127 ---------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp ---------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ---------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 000133556777777777765 2 1
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC------CeEEEEecCcccccccccceee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~ 327 (515)
.+.|..+|..+++... +. .......++|+|++ +.|+.+... +.|.+|++..+.+ .. ...+.
T Consensus 168 ~~~v~~~d~~~g~~~~---------~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~-~~~~~ 234 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQR---------MA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL-HD-RRHFA 234 (305)
T ss_dssp CEEEEEECSSSCCCEE---------EE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE-EE-EEEEE
T ss_pred CCeEEEEcCCCCcEEE---------Ee-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc-cC-CeEEE
Confidence 2456667765443221 11 23456789999998 766666654 7899999875431 10 11111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 407 (515)
.. .......++++++|++.++. .+.|.+|+.. ++.+..+..+.. +..++|
T Consensus 235 ~~-----------~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f 284 (305)
T 3dr2_A 235 SV-----------PDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTF 284 (305)
T ss_dssp CC-----------SSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEE
T ss_pred EC-----------CCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEE
Confidence 00 11335678899999955554 4458888874 666666654432 237999
Q ss_pred cCCCCEEEEecCCC
Q 010206 408 SGDGGRVATGSYSN 421 (515)
Q Consensus 408 s~~~~~l~s~s~dg 421 (515)
+++++.|+.++.++
T Consensus 285 ~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 285 DQAQQRLFITGGPC 298 (305)
T ss_dssp CTTSCEEEEEETTE
T ss_pred eCCCCEEEEEcCCe
Confidence 99999888777654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-10 Score=114.43 Aligned_cols=160 Identities=8% Similarity=0.038 Sum_probs=95.1
Q ss_pred CcCCeEEEEecCCCCEEEEe--C---CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--
Q 010206 233 HDYHINSISNNSDGETFISA--D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 305 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-- 305 (515)
|...+..+.|+||+++|+.. . ...|+++|+.++..... .+..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 34456788999999988653 2 35899999986642222 233344444554 666663555555543
Q ss_pred -CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C--CeEEEEEeeCCCCCeeeE
Q 010206 306 -GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATF 380 (515)
Q Consensus 306 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~--~~i~iwd~~~~~~~~~~~ 380 (515)
+.|..+|+.++... ..+. +..|...+. .|+++++.|+... + ..|++||+. +.....+
T Consensus 304 ~~~l~~~d~~~~~~~--~~~~------------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l 365 (693)
T 3iuj_A 304 NRRLVTVDAANPGPA--HWRD------------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREV 365 (693)
T ss_dssp TCEEEEEETTSCCGG--GCEE------------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEE
T ss_pred CCEEEEEeCCCCCcc--ccEE------------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEe
Confidence 67889998775421 0111 122223343 8899898887643 3 378888876 3333333
Q ss_pred eeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCC
Q 010206 381 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 432 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~ 432 (515)
...... .+..+.++++++.|+....+ +.++.||+.+++
T Consensus 366 ~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 366 ALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 322110 12356677888766644433 789999998763
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-10 Score=105.60 Aligned_cols=179 Identities=9% Similarity=0.108 Sum_probs=121.8
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc--eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.++.+++++...++++|....+++|++........ -.+..+.....+.. |+.++| ++ ..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 68899999999999998444677798764331100 00011111223556 999999 77 788888 8899999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE-cCCeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
++..... . ...|..++.++.+.+.. ++++ ++|.|.+||+.. +.... +...
T Consensus 114 ~sl~~~~----~------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~~------ 164 (388)
T 1xip_A 114 EELSEFR----T------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQN------ 164 (388)
T ss_dssp SSTTCEE----E------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEES------
T ss_pred hhhhccC----c------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccCC------
Confidence 8754211 1 12233557777776542 5554 569999999985 44332 1111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-eeee------c---cCCCceeeEEECCCCCeeEe
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL 459 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~s 459 (515)
|.+++|||+| ++.|..||++++|+...+... ..++ . +|...|.++.|.+++.++++
T Consensus 165 ---------Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 165 ---------VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ---------EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred ---------ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 5699999999 677899999999988765321 3344 3 47788999999999998876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-08 Score=93.14 Aligned_cols=294 Identities=6% Similarity=-0.097 Sum_probs=162.1
Q ss_pred cCCCcEEEeeeC--CC---eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 123 ~~~~~~l~~~~~--d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
.+++.+++++.. .. +|.++|..+++......... .+ .++++|||+.+.+...... .
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spDg~~lyv~n~~~~--~ 89 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----------------LP-NPVAAHSGSEFALASTSFS--R 89 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----------------CC-CeEECCCCCEEEEEecccc--c
Confidence 355566666543 22 88999999988654433221 12 7899999998822110000 0
Q ss_pred CCCCCCcccEEeeeeeecccccccccce--eeeeeccCcCCeEEEEecCCCCEEEEe--C-CCcEEEEeCCCCCccccee
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~ 272 (515)
...+..++.+.++| ....+....... ...+ .+......+.|+|||++|+++ . ++.|.++| .+.+....++
T Consensus 90 ~~rg~~~~~v~viD--~~t~~~~~~i~~~~~~~~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i 164 (373)
T 2mad_H 90 IAKGKRTDYVEVFD--PVTFLPIADIELPDAPRF--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLL 164 (373)
T ss_pred cccCCCCCeEEEEE--CCCCcEEEEEECCCcccc--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEc
Confidence 00112467888888 332221100000 0000 011235589999999999986 3 58899999 8765432101
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccc-eeEEEEc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s 351 (515)
. .. .++.+.|++.+.+++.+.||.+.++|. +++.... ..... .+ ....+ .....+.
T Consensus 165 -------~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~-~~~~p~~~~~~~~ 221 (373)
T 2mad_H 165 -------S-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------ML-TAAQNLLTQPAQA 221 (373)
T ss_pred -------C-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cc-cCCcceeecceeE
Confidence 1 11 135566776567788888999999999 7654311 00000 00 00011 1234566
Q ss_pred cCCCE-EEEEcCCeEEEEEeeCCC-CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC----------
Q 010206 352 RNGRH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---------- 419 (515)
Q Consensus 352 ~~~~~-l~s~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---------- 419 (515)
+++.. ++....+.+.+.|+.... ..+..+........ .. .........++++||++.|+.+..
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~-~~----~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~ 296 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK-AD----TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA 296 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc-cc----ceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence 65544 344444889999986421 11222211110000 00 000001124789999998777543
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec-CCCeEEEec
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVK 470 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~v~l~~ 470 (515)
++.|.++|+.++ +.+..+... .....++++|+++ .++++. .++.|.+++
T Consensus 297 ~~~V~VID~~t~-~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 297 AKEVTSVTGLVG-QTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred CCeEEEEECCCC-EEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 357999999987 444555432 2577999999999 677776 488888844
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-09 Score=94.57 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=87.8
Q ss_pred CCeEEEEecCCCCEEEEe-CC------CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE-EEEecCC
Q 010206 235 YHINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKG 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~~dg 306 (515)
..+++++++|+|+++++. .+ +.|..++ +++ ... +.........++|+|++ +.+ ++.+.++
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~--------~~~~~~~~~~i~~s~dg-~~lyv~~~~~~ 201 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTK--------LFADISIPNSICFSPDG-TTGYFVDTKVN 201 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEE--------EEEEESSEEEEEECTTS-CEEEEEETTTC
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEE--------eeCCCcccCCeEEcCCC-CEEEEEECCCC
Confidence 356788999999877765 22 3455555 222 211 11223456789999998 555 4445678
Q ss_pred eEEEEecC--cc-cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEee
Q 010206 307 SIRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 307 ~i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~ 382 (515)
.|.+||+. ++ .... ...+.. +.........++++++|.+.++... +.|.+||.. ++.+..+..
T Consensus 202 ~I~~~d~~~~~Gl~~~~--~~~~~~---------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~ 268 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGK--AEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEV 268 (326)
T ss_dssp EEEEEEBCTTTCCBSSC--CEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEEC
T ss_pred EEEEEEcccccCCcccC--ceEEEE---------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEEC
Confidence 99999986 44 3211 111111 0111234678999999987777644 889999873 566665554
Q ss_pred eccccccccccccCCCccceeeEEEc-CCCCEEEEec
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGS 418 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s 418 (515)
+... +++++|+ ++++.|+.++
T Consensus 269 ~~~~---------------~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 269 PGKQ---------------TTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCSB---------------EEEEEEESTTSCEEEEEE
T ss_pred CCCC---------------cEEEEEecCCCCEEEEEe
Confidence 3322 4589998 8888765444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-08 Score=90.92 Aligned_cols=225 Identities=12% Similarity=0.025 Sum_probs=134.8
Q ss_pred CeEEEEecCCCCE-EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...+..|+|++.. +++. .++.|..||..+++.. . + .....+.+++++|++ +++++ +. ..|.+||.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~-------~-~~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~ 116 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT--V-------H-ALPFMGSALAKISDS-KQLIA-SD-DGLFLRDT 116 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--E-------E-ECSSCEEEEEEEETT-EEEEE-ET-TEEEEEET
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--E-------E-ECCCcceEEEEeCCC-eEEEE-EC-CCEEEEEC
Confidence 3567889997554 4455 6899999998765321 1 1 124578999999998 66664 44 45999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.+++.. .+..... ......+.+++++|+|+++++... ....||.+.. ++. ..+......
T Consensus 117 ~~g~~~-----~~~~~~~-------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~-~~~~~~~~~-- 180 (326)
T 2ghs_A 117 ATGVLT-----LHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKV-TKLFADISI-- 180 (326)
T ss_dssp TTCCEE-----EEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEE-EEEEEEESS--
T ss_pred CCCcEE-----EEeeCCC-------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcE-EEeeCCCcc--
Confidence 776531 1111000 001135889999999997776431 2344555542 432 222211111
Q ss_pred cccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecC--CC-Cc----ceeeeccCCCceeeEEECCCCCeeEee
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCS--EG-SA----ESTTLEASKNPMRRQVQTPSRPSRPLG 460 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~--~~-~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~ 460 (515)
...++|+||++.|+ +.+.++.|.+|++. ++ .. ....+.........+++.++|.+.++.
T Consensus 181 -------------~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 181 -------------PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp -------------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred -------------cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 23789999998765 44567899999986 44 21 112222334456788999999877776
Q ss_pred cCCCeEEEecCCCCCccccCCccccccCCeeEEEEc-CCCCEEEEEc
Q 010206 461 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 506 (515)
Q Consensus 461 ~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~ 506 (515)
..++.|..++-.. +...........+.+++|+ |+++.|.+++
T Consensus 248 ~~~~~v~~~d~~g----~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 248 WGEGAVDRYDTDG----NHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ETTTEEEEECTTC----CEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred eCCCEEEEECCCC----CEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 5566666632210 0100111124568999998 9988877654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-10 Score=104.32 Aligned_cols=184 Identities=10% Similarity=0.031 Sum_probs=123.2
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCccccccc-ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCC
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 363 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~ 363 (515)
+++.+++++.. .++++|+.+ .+.+|++........ ....++ ......+.. |+.++| ++++|+++.++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-------~~~~~~lp~-V~~l~f--d~~~L~v~~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLT-------FKWEKEIPD-VIFVCF--HGDQVLVSTRN 106 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-------CSEEEECTT-EEEEEE--ETTEEEEEESS
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhcccccccc-------ceEEeeCCC-eeEEEE--CCCEEEEEcCC
Confidence 68899999998 789988887 556699866431000 000011 001223446 999999 89999999669
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCC
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
.|++||+.. .........+... +.++.+.+. .+++++.||.|.+||++++... .+..
T Consensus 107 ~l~v~dv~s-l~~~~~~~~~~~~---------------v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~~~ 163 (388)
T 1xip_A 107 ALYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QLAQ 163 (388)
T ss_dssp EEEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EEEE
T ss_pred cEEEEEchh-hhccCccceeecc---------------eeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cccC
Confidence 999999986 4444444444322 335555544 3888899999999999976432 2456
Q ss_pred ceeeEEECCCCCeeEeecCCCeEEEe--cCCCCC-ccccCC-----ccccccCCeeEEEEcCCCCEEEEE
Q 010206 444 PMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNS-ALDANG-----NAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 444 ~v~~~~~~~~~~~l~s~~~d~~v~l~--~~~~~~-~~~~~~-----~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
.|++++|+|+| ++.|..||.++++ ++.... +.++.. +..++...|.++.|.+++.++++-
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 89999999999 6788889999982 222210 101110 111367889999999999999863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-08 Score=96.39 Aligned_cols=260 Identities=9% Similarity=-0.013 Sum_probs=147.1
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
.....|+|+++|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 46789999999998888878899999998765532 111111 223
Q ss_pred EEEEEeecCCCcEEEeeeCCC--eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 116 ~~l~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
. ++| ++++..|+++..++ .|.+|+..++............ ... .+..++++|++..|
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~----~~~-------~p~~iav~p~~g~l------- 233 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST----FSG-------KIGAVALDETEEWL------- 233 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT----SCS-------CCCBCEECTTSSEE-------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch----hcC-------CcEEEEEeCCCCeE-------
Confidence 3 888 55677888887765 7888888765432222000000 001 11278888844444
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCe-E-EEEecCC-CCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI-N-SISNNSD-GETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
+....++.|..|| ........ .......++...- . .++|+|+ +.++++- .++.|+.|+.... ..
T Consensus 234 -----yv~d~~~~I~~~d--~~~~~~~~---~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~ 301 (409)
T 3hrp_A 234 -----YFVDSNKNFGRFN--VKTQEVTL---IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CE 301 (409)
T ss_dssp -----EEECTTCEEEEEE--TTTCCEEE---EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE
T ss_pred -----EEEECCCcEEEEE--CCCCCEEE---EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EE
Confidence 3345567888877 32221100 0000011222211 3 8999996 5555554 6889999997633 11
Q ss_pred ceeccc-Ccc------ccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeecc-CCCcc--ccc
Q 010206 270 NIVDVK-PAN------MEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFF 338 (515)
Q Consensus 270 ~~~~~~-~~~------~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 338 (515)
.+.... ... ....-.....++++|++ +++++-. .++.|+.||+.++.. ..+.... ..... ...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence 111100 000 00112347899999999 7777777 789999999877653 1222110 00000 000
Q ss_pred cccccceeEEEEccCCCEEEEEcC-CeEEEEEe
Q 010206 339 TEIIASISDIKFARNGRHILSRDY-MTLKLWDI 370 (515)
Q Consensus 339 ~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~ 370 (515)
...-.....++++++|.++++-.. ++|+.+++
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 011245789999999877776554 78887765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-09 Score=97.29 Aligned_cols=282 Identities=9% Similarity=0.021 Sum_probs=167.4
Q ss_pred eecCCCcEEEeeeC-C----CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCC
Q 010206 121 CQSANSALYLLSTN-D----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (515)
Q Consensus 121 ~~~~~~~~l~~~~~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 195 (515)
.|.+++..++++.. + +.|.++|..+.+..........+ .++++|||+.+
T Consensus 79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-----------------gia~SpDgk~l--------- 132 (426)
T 3c75_H 79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-----------------HPVAAEDGSFF--------- 132 (426)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE---------
T ss_pred cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-----------------ceEECCCCCEE---------
Confidence 34455566666544 2 69999999999887776654322 68999999988
Q ss_pred CCCCCCC----------CcccEEeeeeeecccccccccceeeeeecc------CcCCeEEEEecCCCCEEEEe--C-CCc
Q 010206 196 DSSFPPG----------GVSSLRLPVVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA--D-DLR 256 (515)
Q Consensus 196 ~~~~~~~----------~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~--~-d~~ 256 (515)
+.+. .++.|.++| ....+. ......+ .......+.++||++++..+ . ++.
T Consensus 133 ---yVan~~~~~~~~G~~~~~VsviD--~~t~~v------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 133 ---AQASTVFERIARGKRTDYVEVFD--PVTFLP------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC--TTTCCE------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ---EEEeccccccccCCCCCEEEEEE--CCCCcE------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 4443 467888888 333221 1111111 11235578999999999886 3 688
Q ss_pred EEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccc
Q 010206 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
|.+.|+.+.+....+ ... + +....|++.+.+++.+.||.+.+.+..+++........+....
T Consensus 202 VsVID~~t~kvv~~I------~v~---g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~------ 263 (426)
T 3c75_H 202 VGVVDLEGKTFDRML------DVP---D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED------ 263 (426)
T ss_dssp EEEEETTTTEEEEEE------ECC---S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT------
T ss_pred EEEEECCCCeEEEEE------EcC---C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC------
Confidence 999999977654322 111 1 1334455446667777788888888755443211000111110
Q ss_pred cccccccc-eeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCC--eeeEeeeccccccccccccCCCccceeeEEEcCCCC
Q 010206 337 FFTEIIAS-ISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 412 (515)
Q Consensus 337 ~~~~~~~~-i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 412 (515)
.+ ...+.+++++..++..+. +.+.+.|+.. ... +..+...... .+. . .........++++|+++
T Consensus 264 ------~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~-~~~~v~~~~~~~~~~--~i~-~--g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 264 ------ELLINHPAFSLRSGRLVWPTYTGKIFQADLTA-EGATFRAPIEALTEA--ERA-D--DWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp ------SCBCSCCEECTTTCEEEEEBTTSEEEEEEECS-SCEEECCCEESSCTT--TGG-G--TEEECSSSCEEEEGGGT
T ss_pred ------CceeeEeeecCCCCEEEEEeCCCcEEEEeccC-CceEEeeeeeecccc--ccc-c--ccccCCceeeEEcCCCC
Confidence 11 123567888887766555 8999999864 221 1111100000 000 0 00000011478999998
Q ss_pred EEEEecC----------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCC-eeEeec-CCCeEEEecC
Q 010206 413 RVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKG 471 (515)
Q Consensus 413 ~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~d~~v~l~~~ 471 (515)
.++.... ++.|.+.|+.+.+ .+.++.... ....++++|+++ .+++.. .++.|.+++.
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~k-vv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGE-RINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCC-EEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCe-EEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 7776532 4579999999874 445554322 467999999999 777777 4899998543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-08 Score=90.82 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=142.4
Q ss_pred EEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcc
Q 010206 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l 186 (515)
.+.+ ++++++++++. .++.|.+||+.+++............... + ..+-.++++|||+.+
T Consensus 69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~--g------~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV--G------PRVHIIGNCASSACL 138 (368)
T ss_dssp EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB--S------CCTTSEEECTTSSCE
T ss_pred ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc--C------CCcceEEEcCCCCEE
Confidence 6888 56777888875 37899999999998877665431000000 0 001178999999998
Q ss_pred ccccccCCCCCCCCCCC--cccEEe--eeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEE-EEe-CCCcEEEE
Q 010206 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLW 260 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~-~d~~i~iw 260 (515)
+.+.. ...+.+ +| ... ......+. ++.+.|+++.. ++. .|+.+.+.
T Consensus 139 ------------yVan~~~~~~v~V~~iD--~~t---------v~~i~v~~-----~~~~~p~g~~~~~~~~~dg~~~~v 190 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPG--ASD---------DQLTKSAS-----CFHIHPGAAATHYLGSCPASLAAS 190 (368)
T ss_dssp ------------EEEECSSSCEEEEEETT--TEE---------EEEEECSS-----CCCCEEEETTEEECCCCTTSCEEE
T ss_pred ------------EEEccCCCCeEEEEEEc--hhh---------ceEEECCC-----ceEEccCCCeEEEEEcCCCCEEEE
Confidence 55442 456777 77 222 11110111 11233444333 332 68888888
Q ss_pred eCCC----CCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccc
Q 010206 261 NLEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 336 (515)
Q Consensus 261 d~~~----~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
|+.+ ........ . ..+.-...+. . .+++ ..++..+. +.+.+.|+...... ....+...... ..
T Consensus 191 d~~~~~~~~~~v~~~~--t-~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~--~~ 257 (368)
T 1mda_H 191 DLAAAPAAAGIVGAQC--T-GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESG--RK 257 (368)
T ss_dssp ECCSSCCCCEECCCCS--C-TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTH--HH
T ss_pred ECccccccCCeEEEEe--e-eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcce--EEEEEEecccc--cc
Confidence 8875 22111000 0 0111122333 3 6666 45555555 89999998653210 00111100000 00
Q ss_pred cccccccceeEEEEccCCCEEEEE-c---------CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 337 FFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 337 ~~~~~~~~i~~~~~s~~~~~l~s~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...........++++|+++.++.+ . .+.+.++|+.+ .+.+.++...... ..++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~ 320 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAII 320 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEE
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEE
Confidence 000011122336899999888764 2 22566999997 7777777655432 3899
Q ss_pred EcCCCC-EEEEec-CCCcEEEEecCCCCcceeeeccCCC
Q 010206 407 LSGDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASKN 443 (515)
Q Consensus 407 ~s~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~ 443 (515)
|+|||+ .+++.. .++.|.++|+.++ +.+.+++....
T Consensus 321 ~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~vg~~ 358 (368)
T 1mda_H 321 AAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVELDKG 358 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECCCCSC
T ss_pred ECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEECCCC
Confidence 999998 455666 5999999999987 44455554443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-09 Score=106.03 Aligned_cols=237 Identities=11% Similarity=0.102 Sum_probs=141.9
Q ss_pred cCcCCeEEEEecCCCCEEEEe-C-----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC
Q 010206 232 AHDYHINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 305 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d 305 (515)
+|...+..++|||||++|+.+ + ...|++||+.+++.... .+.. .....++|+ |+ +.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~~--~k~~~~~Ws-Dg-~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLKD--VKFSGISWL-GN-EGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEEE--EESCCCEEE-TT-TEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccCC--ceeccEEEe-CC-CEEEEEEec
Confidence 355678889999999999854 2 25799999998764321 1111 112467899 98 777777776
Q ss_pred C-------------eEEEEecCcccccccccceeeeccCCCccccccc-cccceeEEEEccCCCEEEEE-c---C-CeEE
Q 010206 306 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK 366 (515)
Q Consensus 306 g-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~-~---~-~~i~ 366 (515)
. .|++|++.+...... ..++. .. |...+..+.|+|||++|+.. . . +.|+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGA----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESC----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEec----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 3 488999877543111 11111 11 22346789999999988652 1 2 5899
Q ss_pred EEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-EecC---CCcEEEEecCCCCcc-eeeeccC
Q 010206 367 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY---SNLFRVFGCSEGSAE-STTLEAS 441 (515)
Q Consensus 367 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~---dg~i~iw~~~~~~~~-~~~~~~~ 441 (515)
++|+..+......+..+.... ... ++++|..|+ .... .+.|..+++.++... ...+..|
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 999976333455555443221 123 666766555 4333 368999999876431 2345555
Q ss_pred CCceeeEEECCCCCeeEeecC-CCe--EEEe--cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-----CcEE
Q 010206 442 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 511 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~-d~~--v~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-----~~~~ 511 (515)
...+. .+++++..|+.... ++. ++++ ++.... .+ .......+..++++|+++.|+.... ..++
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 55544 88888888766654 443 4442 222111 11 1122356778888999888775432 3455
Q ss_pred EEe
Q 010206 512 MYY 514 (515)
Q Consensus 512 i~~ 514 (515)
.|+
T Consensus 400 ~~d 402 (693)
T 3iuj_A 400 RFE 402 (693)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-07 Score=86.38 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=90.6
Q ss_pred EEEecCCCCEEEEeC--------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCC
Q 010206 239 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 296 (515)
Q Consensus 239 ~~~~~~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~ 296 (515)
.+.|+|+++.+++++ +.+|.+||+.+.+. ...+. +.........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~-~~tI~-----vg~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR-IHSLT-----LGEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE-EEEEE-----SCTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE-eeEEe-----cCCCCCccceeEeeECCCC-
Confidence 466677777777763 78999999987532 22221 1111223456666 9998
Q ss_pred cEEEEEe------cCCeEEEEecCcccccccccceeeeccC--CCcc----ccccccccceeEEEEccCCCEEEEEcC--
Q 010206 297 NMLAYSS------SKGSIRLIDMRQSALCDTHSKLFEEQEA--PGTR----SFFTEIIASISDIKFARNGRHILSRDY-- 362 (515)
Q Consensus 297 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~i~~~~~s~~~~~l~s~~~-- 362 (515)
+++++++ .+++|.+|....+... ..+.++.... .... .-+.+-......+.+|+||++|+++..
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 5555555 5678888776554321 1122211110 0000 000111235788999999999998764
Q ss_pred CeEEEEEeeCCCC--CeeeEeeeccccccccccccCCCc-cceeeEEEcCCCCEEEEec
Q 010206 363 MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 363 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~s 418 (515)
+.|.+||+....+ .+..+...... .+.... ....+ ..-..++++|||++|+++.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVKLGGIF-HRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEECBTTT-TCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEEecCCCCcEEEEEEEeCCee-cccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999964332 22222221100 000000 00000 0012789999999998877
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-08 Score=88.91 Aligned_cols=254 Identities=7% Similarity=-0.052 Sum_probs=145.7
Q ss_pred CCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-----CC
Q 010206 235 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-----dg 306 (515)
..+..++++++++.+++. .++.++||.+.+++ ........ .....+...+.++++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 678899999999999985 24535566554222 11100000 0122355679999999998 66665544 57
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEE-EEEc---C-CeEEEEEeeCCCCCeeeEe
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD---Y-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~---~-~~i~iwd~~~~~~~~~~~~ 381 (515)
.|.+||+.+++.. +.+..+... ..+...+..+++++++..+ ++.. . +.|.+||+.+ ++....+.
T Consensus 94 ~i~~~d~~tg~~~----~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQLS----RVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEEE----EEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeEE----EEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 8999999887643 222221100 1122356889999865444 4433 4 8999999975 55444443
Q ss_pred eecccccccc-------ccc---cCCC----ccceeeEEEcCCCCEEEEecCCC-cEEEEecC---CCC----ccee--e
Q 010206 382 VHEHLRPKLC-------DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCS---EGS----AEST--T 437 (515)
Q Consensus 382 ~~~~~~~~~~-------~~~---~~~~----~~~v~~~~~s~~~~~l~s~s~dg-~i~iw~~~---~~~----~~~~--~ 437 (515)
.|......-. .++ .... ...+..++|+|||+.|+.+..++ .++.++.. .+. .... .
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 3211110000 000 0000 01246899999999888777655 55444432 110 0000 1
Q ss_pred eccCCCceeeEEECCCCCeeEeecCCCeEEEecC--CCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 438 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 438 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
..++......++++++|.++++...++.|.+++- .+.. .... .........++|+++++++++.+
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~---~~~~-~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK---LLVT-DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE---EEEE-CGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE---EEEE-CCceecCCeeEECCCCcEEEEeC
Confidence 1233445668999999999999888888888432 1111 0100 01234678999999998877765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-07 Score=84.93 Aligned_cols=233 Identities=11% Similarity=0.076 Sum_probs=138.9
Q ss_pred CCCCEEEEe--CCCcEEEEeCCCCCcccceecc-cCcccc-c-cCCceEEEEEecCCCcEEEEEecC------CeEEEEe
Q 010206 244 SDGETFISA--DDLRINLWNLEISNQSFNIVDV-KPANME-D-LTEVITSAEFHPTHCNMLAYSSSK------GSIRLID 312 (515)
Q Consensus 244 ~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~~-~-~~~~i~~i~~~p~~~~~l~~~~~d------g~i~~wd 312 (515)
+++++|+.. .++.|.++|+.+.....++... .|..+. . .......+...|++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 778888774 7999999999754322222211 011111 1 12245778889998 55665555 7899999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--------------------CCeEEEEEeeC
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--------------------YMTLKLWDINM 372 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--------------------~~~i~iwd~~~ 372 (515)
..+.+... .++....+ ..--..+-|+|+++.+++.+ ..+|.+||+.+
T Consensus 171 ~~T~~v~~----~~~~~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 171 HYSFEPLG----KWEIDRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTTCCEEE----ECCSBCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCCeEEE----EEccCCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 99887643 23211110 01234688899999999874 38999999986
Q ss_pred CCCCeeeEeeecc-ccccccccccCCCccceeeEE--EcCCCCEEEEec------CCCcEEEEecCCCCcce-eee--cc
Q 010206 373 DSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECC--LSGDGGRVATGS------YSNLFRVFGCSEGSAES-TTL--EA 440 (515)
Q Consensus 373 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~s------~dg~i~iw~~~~~~~~~-~~~--~~ 440 (515)
++.++++..... .. ...+. |+|++++++.++ .+++|.+|....+.... +.+ ..
T Consensus 238 -~k~~~tI~vg~~g~~--------------P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~ 302 (462)
T 2ece_A 238 -RKRIHSLTLGEENRM--------------ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPA 302 (462)
T ss_dssp -TEEEEEEESCTTEEE--------------EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECC
T ss_pred -CcEeeEEecCCCCCc--------------cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCC
Confidence 666666654311 10 01344 499999987766 46688776655431111 110 10
Q ss_pred ----------------CCCceeeEEECCCCCeeEeecC-CCeEEEecCCCCCccccCCcc-cc-------c------cCC
Q 010206 441 ----------------SKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNA-FD-------F------SMK 489 (515)
Q Consensus 441 ----------------~~~~v~~~~~~~~~~~l~s~~~-d~~v~l~~~~~~~~~~~~~~~-~~-------~------~~~ 489 (515)
-......+.+++|+++|..+.. .+.|.+++-......++.... .+ + ...
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 0234678999999998866655 678887432211111111110 00 0 113
Q ss_pred eeEEEEcCCCCEEEEEc
Q 010206 490 LLHLAWHPSENSIACAA 506 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~ 506 (515)
-..++++|||++|.++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 58899999999999887
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-07 Score=92.34 Aligned_cols=195 Identities=9% Similarity=0.062 Sum_probs=114.1
Q ss_pred EEEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCcccccc-------CCceEEEE
Q 010206 238 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDL-------TEVITSAE 290 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~i~ 290 (515)
..++++|++..++.+ .++ .|..+|.++++...... ...| .....-+.
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~------~~~~d~wd~~~~~~p~l~~ 319 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ------ETPGDNWDYTSTQPMILAD 319 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCCEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe------cCCCcccccccCCCcEEEe
Confidence 357788888888876 443 59999999887654321 1111 11222333
Q ss_pred EecCCC--cEEEEEecCCeEEEEecCcccccccccce-------eeeccCCC----------ccccc---cccccceeEE
Q 010206 291 FHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKL-------FEEQEAPG----------TRSFF---TEIIASISDI 348 (515)
Q Consensus 291 ~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~---~~~~~~i~~~ 348 (515)
...+|. ..++.++.+|.+.++|.++++.+...... ++....+. ....+ .+. ..-..+
T Consensus 320 ~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~-~~w~~~ 398 (677)
T 1kb0_A 320 IKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA-HNWHPM 398 (677)
T ss_dssp EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS-SCSSCC
T ss_pred cccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc-cCCCCc
Confidence 444552 47888999999999999999875331100 00000000 00000 000 011357
Q ss_pred EEccCCCEEEEEc-------------------------------------------C-CeEEEEEeeCCCCCeeeEeeec
Q 010206 349 KFARNGRHILSRD-------------------------------------------Y-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 349 ~~s~~~~~l~s~~-------------------------------------------~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+++|++.++++.. . +.|..||+.+ ++.+-.+....
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 477 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVS 477 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESS
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCC
Confidence 8899887777631 1 6788888876 66554443221
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-CCCceeeEEECCCCCee
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 457 (515)
. ++...+..++.+++.++.||.+++||.++++ ++..+.. +...-..+.+.++|+.+
T Consensus 478 ~----------------~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 478 P----------------WNGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp S----------------CCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEE
T ss_pred C----------------CcCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeeeCCCCcccCCEEEEeCCEEE
Confidence 1 1244566788889999999999999999984 4445543 33333455666777644
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-07 Score=92.37 Aligned_cols=199 Identities=12% Similarity=0.068 Sum_probs=113.1
Q ss_pred EEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCccccc--cCCceEEEEEecCCC
Q 010206 239 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 296 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~ 296 (515)
.++++|+..+++.+ .++ .|..+|.++++....... .+...-. ...++.......+|
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~-~~~d~wd~~~~~~~~l~d~~~~G- 316 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT-TPGDAWDYTATQHMILAELPIDG- 316 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES-STTCCSCCCCCSCEEEEEEEETT-
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec-CCcccccccCCCCcEEEeeccCC-
Confidence 57788888888887 555 399999998876543210 0000000 11222222333355
Q ss_pred c---EEEEEecCCeEEEEecCcccccccccc---eeeecc----------------CCCcc--cccccc--ccceeEEEE
Q 010206 297 N---MLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQE----------------APGTR--SFFTEI--IASISDIKF 350 (515)
Q Consensus 297 ~---~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~----------------~~~~~--~~~~~~--~~~i~~~~~ 350 (515)
. .++.++.+|.++++|.++++.+..... .+.... .+... ....+. ...-..+++
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 4 788899999999999999987532100 000000 00000 000000 001233788
Q ss_pred ccCCCEEEEEc----------------------------------------------CCeEEEEEeeCCCCCeeeEeeec
Q 010206 351 ARNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 351 s~~~~~l~s~~----------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
+|+..++++.. +|.|..||+.+ ++.+-.+..+.
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~ 475 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVT 475 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESS
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCC
Confidence 88877777531 25688888876 66555544332
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-CCceeeEEECCCCCee
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSR 457 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 457 (515)
.. ....+...+.+++.|+.||.|+.||.++++ ++..++.. ......+.+..+|+.+
T Consensus 476 ~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~-~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 476 IF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTGE-KLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SC----------------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEE
T ss_pred Cc----------------cCccceECCCEEEEECCCCcEEEEECCCCc-cceeeeCCCCcccCceEEEECCEEE
Confidence 11 133566678899999999999999999985 44455433 2223456666777643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-05 Score=80.61 Aligned_cols=385 Identities=11% Similarity=0.037 Sum_probs=204.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
|.++...++|.+.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88898888887655 555444888887655421 000 00011 45777
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+.. ..++ .+..++.++-|.+||..+++..........+ .......|. ++...++|..
T Consensus 220 i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~l------------ 276 (795)
T 4a2l_A 220 ILQ--QSPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNP-KSISSNYIR-------SLAMDSQNRL------------ 276 (795)
T ss_dssp EEE--EETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCT-TSCSCSBEE-------EEEECTTSCE------------
T ss_pred EEE--cCCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCc-cccCCCeEE-------EEEEcCCCCE------------
Confidence 776 3444 4555665545889998887655442211000 011112222 4444555554
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA 277 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (515)
..++.. .+.+++ ..................-....|.++...++|.+.+...++-|..|+..+... ......+.
T Consensus 277 -Wigt~~-Gl~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~ 350 (795)
T 4a2l_A 277 -WIGTFN-DLNIYH--EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPY 350 (795)
T ss_dssp -EEEESS-CEEEEE--TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--EEECCCTT
T ss_pred -EEEeCC-hhheEc--CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--eEEcCCCC
Confidence 344444 566666 211110000000000001123579999999999877766667788888764331 11100000
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc-CCCccccccccccceeEEEEccCCCE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
.-.-....|.++...+++ . |-.|+.++-|..||..++... .+.... .+. ..-....|.++...++|+.
T Consensus 351 ~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~----~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 351 KNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFT-----SYTLQEDESA----RGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp SSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEE-----EECCC----------CCSCSCEEEEEEETTTTE
T ss_pred CCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEE-----EEecCCCCcc----cCCCCccEEEEEEcCCCCE
Confidence 001124569999998887 4 455788878999998765421 111000 000 0001246899999889984
Q ss_pred EEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcce
Q 010206 357 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 435 (515)
Q Consensus 357 l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~ 435 (515)
|..|+. +.|..||..+ ++ ...+..... .+ .-..|.++...++|++.+.. . +.|.+|+..++....
T Consensus 420 lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~---~l-------~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNS-GQ-VENFNQRNS---QL-------VNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEETTTEEEEEETTT-CC-EEEECTTTS---CC-------SCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEE
T ss_pred EEEEeCcCceeEEeCCC-Cc-EEEeecCCC---Cc-------CCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEE
Confidence 444544 7799999874 32 333321100 00 00125688888888866544 3 458889987653221
Q ss_pred eee-----ccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccC-CccccccCCeeEEEEcCCCCEEEEEcCC
Q 010206 436 TTL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASN 508 (515)
Q Consensus 436 ~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~la~~~~~ 508 (515)
... ......+.++...+++...+... .|..++ .+.... ..... .........|.++...++|++.+... +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~ 562 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E 562 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C
Confidence 111 11235688888888887665554 666555 222211 00000 01111346789999999998655444 4
Q ss_pred cEEEEe
Q 010206 509 SLYMYY 514 (515)
Q Consensus 509 ~~~i~~ 514 (515)
|++.|+
T Consensus 563 Gl~~~d 568 (795)
T 4a2l_A 563 GFYCFN 568 (795)
T ss_dssp CEEEEE
T ss_pred CceeEC
Confidence 888875
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-05 Score=80.23 Aligned_cols=390 Identities=9% Similarity=0.035 Sum_probs=208.8
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...|.++...++|.+.+....+| |.+|+..+++.. .... ....+ ..+ ....
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~---------------------~~~~-~~~~~-----~~l-~~~~ 264 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK---------------------NYLH-SPSNP-----KSI-SSNY 264 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE---------------------EECC-CTTCT-----TSC-SCSB
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE---------------------Eeec-CCCCc-----ccc-CCCe
Confidence 45788888888887655433344 888887654421 0000 00000 000 0145
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|.++.. ..++. |..|+.+ -|.+|+..+++........... ..+....|. ++...++|..
T Consensus 265 i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~D~~g~l--------- 323 (795)
T 4a2l_A 265 IRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVEN-GSLSQRSVR-------SIFMDSQGGM--------- 323 (795)
T ss_dssp EEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTST-TSCSSSCEE-------EEEECTTSCE---------
T ss_pred EEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCC-CCCCCCcEE-------EEEEeCCcCE---------
Confidence 888887 55554 5555555 5889998887765443221111 111122232 4445555553
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecc
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
..|+.++.|..++ .....-.... .......-....|.++...+++.+.+...++-|..||..+..... ...
T Consensus 324 ----Wigt~~~Gl~~~~--~~~~~~~~~~-~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~--~~~ 394 (795)
T 4a2l_A 324 ----WLGTYFGGLNYYH--PIRNRFKNIR-NIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS--YTL 394 (795)
T ss_dssp ----EEEESSSCEEEEC--GGGGSSEEEC-CCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE--ECC
T ss_pred ----EEEECCCCeEEeC--CCcccceEEc-CCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE--Eec
Confidence 5566666777665 2111100000 000000012456999999999987776677678899987543211 100
Q ss_pred cCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc
Q 010206 275 KPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352 (515)
Q Consensus 275 ~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 352 (515)
.+... .-....|.++...+++ ++|..|+.++.+..||..+++.. .+.... + ......|.++...+
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~-----~~~~~~-~------~l~~~~v~~i~~d~ 461 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVE-----NFNQRN-S------QLVNENVYAILPDG 461 (795)
T ss_dssp C------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEE-----EECTTT-S------CCSCSCEEEEEECS
T ss_pred CCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEE-----EeecCC-C------CcCCCeeEEEEECC
Confidence 00000 0124568999998887 64666888788999998876531 111100 0 01124689999988
Q ss_pred CCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 353 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 353 ~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
+|++.++.. +.|.+||..+ + ....+..... ...+ .-..|.++..+++|++.+... +.|..|+..++.
T Consensus 462 ~g~lwigt~-~Gl~~~~~~~-~-~~~~~~~~~~-~~~~-------~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EGNLWLGTL-SALVRFNPEQ-R-SFTTIEKEKD-GTPV-------VSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SSCEEEEES-SCEEEEETTT-T-EEEECCBCTT-CCBC-------CCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CCCEEEEec-CceeEEeCCC-C-eEEEcccccc-cccc-------CCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 888776655 4688888764 2 2222211100 0000 001255888898998766544 568889887653
Q ss_pred cceee-----eccCCCceeeEEECCCCCeeEeecCCCeEEEe-cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 433 AESTT-----LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 433 ~~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
. ... -......+.++...++|.+.++.. .|..++- +...... ......-....|.++...++|++.+.+
T Consensus 529 ~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~~--~~~~~gl~~~~i~~i~~d~~g~lWi~t- 603 (795)
T 4a2l_A 529 I-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EGFYCFNEKDKQIKR--YNTTNGLPNNVVYGILEDSFGRLWLST- 603 (795)
T ss_dssp E-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE--ECGGGTCSCSCEEEEEECTTSCEEEEE-
T ss_pred E-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CCceeECCCCCcEEE--eCCCCCCchhheEEEEECCCCCEEEEc-
Confidence 2 100 012345678888888888655444 3766661 1111110 000000113468899999988765544
Q ss_pred CCcEEEEe
Q 010206 507 SNSLYMYY 514 (515)
Q Consensus 507 ~~~~~i~~ 514 (515)
.+|+..|+
T Consensus 604 ~~Gl~~~~ 611 (795)
T 4a2l_A 604 NRGISCFN 611 (795)
T ss_dssp TTEEEEEE
T ss_pred CCceEEEc
Confidence 68888775
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-09 Score=100.66 Aligned_cols=149 Identities=7% Similarity=-0.007 Sum_probs=71.0
Q ss_pred CCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc
Q 010206 244 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 322 (515)
Q Consensus 244 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 322 (515)
.++..++++ .|+.|+.||.++++...... ....... ...++ +. .+ ..+++++.++.+..||.++++...+.
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEECS-CCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEEe
Confidence 345566665 79999999998776532210 0000000 01111 11 23 46778889999999999999864321
Q ss_pred cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccc
Q 010206 323 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 401 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
.. + . ...++|++..+++++. +.|+.||.++ ++.+-.+......
T Consensus 119 ----~~------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~--------------- 162 (369)
T 2hz6_A 119 ----SS------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA--------------- 162 (369)
T ss_dssp ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred ----cC------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence 11 1 0 1344567777877764 9999999987 6665555433211
Q ss_pred eeeEEEcCCC---CEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 402 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 402 v~~~~~s~~~---~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
..+++++. ..+++++.||.|+.||.++++ .+...+
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~ 200 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD-VLWIQN 200 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCC-EEEEEE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCc-EEEEec
Confidence 23333332 456678889999999999884 334443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-08 Score=88.12 Aligned_cols=209 Identities=10% Similarity=0.106 Sum_probs=124.3
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCcc
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 278 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 278 (515)
+.++.++.+..+| .. + .....+ ......+.++...+++.+++...++.|..+|.. ++....
T Consensus 111 ~v~t~~~~l~~~d--~~---g----~~~~~~-~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~-------- 171 (330)
T 3hxj_A 111 YVTSMDGHLYAIN--TD---G----TEKWRF-KTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWR-------- 171 (330)
T ss_dssp EEECTTSEEEEEC--TT---S----CEEEEE-ECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEE--------
T ss_pred EEEecCCEEEEEc--CC---C----CEEEEE-cCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEE--------
Confidence 5566677777766 21 1 111111 223334566677778876665578999999987 543321
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 279 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 279 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
.......+.++...+++ .++ .++ +.+..+| .+++.... +.. ....+.++...++|.+.+
T Consensus 172 ~~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~~~~~----~~~------------~~~~~~~~~~~~~g~l~v 230 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-PDGTEKWN----FYA------------GYWTVTRPAISEDGTIYV 230 (330)
T ss_dssp EECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-TTSCEEEE----ECC------------SSCCCSCCEECTTSCEEE
T ss_pred EecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-CCCcEEEE----Ecc------------CCcceeceEECCCCeEEE
Confidence 11223445667777777 444 444 7888999 66543211 111 113477788888887666
Q ss_pred EEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee
Q 010206 359 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 359 s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~ 438 (515)
...++.|..+|.. ++.+..+...... +..+.+.+++. |..++.+|.|..+|. ++ .....+
T Consensus 231 ~t~~~gl~~~~~~--g~~~~~~~~~~~~---------------~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g-~~~~~~ 290 (330)
T 3hxj_A 231 TSLDGHLYAINPD--GTEKWRFKTGKRI---------------ESSPVIGNTDT-IYFGSYDGHLYAINP-DG-TEKWNF 290 (330)
T ss_dssp EETTTEEEEECTT--SCEEEEEECSSCC---------------CSCCEECTTSC-EEEECTTCEEEEECT-TS-CEEEEE
T ss_pred EcCCCeEEEECCC--CCEeEEeeCCCCc---------------cccceEcCCCe-EEEecCCCCEEEECC-CC-cEEEEE
Confidence 6556788888642 5554444322211 11455565665 556778888999996 44 344444
Q ss_pred ccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
......+.++...+++. |..++.+|.+++
T Consensus 291 ~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~ 319 (330)
T 3hxj_A 291 ETGSWIIATPVIDENGT-IYFGTRNGKFYA 319 (330)
T ss_dssp ECSSCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred EcCCccccceEEcCCCE-EEEEcCCCeEEE
Confidence 44556677777777776 455778888887
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-06 Score=79.34 Aligned_cols=259 Identities=11% Similarity=0.074 Sum_probs=135.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
+..+++++.++.|..+|..+++.......... +. ..... .++ .+ +.++.++
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---------~~------~~p~~-~~~-~v------------~v~~~~g 153 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---------AL------SRPVV-SDG-LV------------LIHTSNG 153 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSC---------CC------SCCEE-ETT-EE------------EEECTTS
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---------eE------cCCEE-ECC-EE------------EEEcCCC
Confidence 45788889999999999999987765544311 10 01111 122 22 5566777
Q ss_pred cEEeeeeeecccccccccceeeeeeccCcCCe------EEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCcc
Q 010206 206 SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 278 (515)
Q Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 278 (515)
.+..+| ..+.+ ....+.. ...+ ..... .+..++.+ .++.+..+|..+++.........+..
T Consensus 154 ~l~~~d--~~tG~------~~W~~~~--~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 154 QLQALN--EADGA------VKWTVNL--DMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp EEEEEE--TTTCC------EEEEEEC--CC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred eEEEEE--CCCCc------EEEEEeC--CCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 788777 32221 1111110 0111 11111 13456666 78999999998877554321000000
Q ss_pred ---ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC
Q 010206 279 ---MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 355 (515)
Q Consensus 279 ---~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 355 (515)
+............. + ..++.++.++.+..+|.++++...+ ... .....+... +.
T Consensus 222 ~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~------~~~------------~~~~~~~~~--~~ 278 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK------REL------------GSVNDFIVD--GN 278 (376)
T ss_dssp --------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE------ECC------------CCEEEEEEE--TT
T ss_pred CcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee------ccC------------CCCCCceEE--CC
Confidence 00000000011111 2 4677788899999999998875422 110 123333333 44
Q ss_pred EEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 356 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 356 ~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.++ ++.|..+|..+ ++.+-......... ...... .+..|+.++.+|.|+.+|.++++ .
T Consensus 279 ~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~-~ 340 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------LTSPVL--YNGNLVVGDSEGYLHWINVEDGR-F 340 (376)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------CCCCEE--ETTEEEEECTTSEEEEEETTTCC-E
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------ccCCEE--ECCEEEEEeCCCeEEEEECCCCc-E
Confidence 555554 48999999986 65543332111000 012222 24678888999999999999884 4
Q ss_pred eeeeccCCCceee-EEECCCCCeeEeecCCCeEEE
Q 010206 435 STTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d~~v~l 468 (515)
+...+.....+.. ... .+..|..++.+|.+..
T Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 341 VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 3444332222221 222 2345666777776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-07 Score=85.63 Aligned_cols=255 Identities=10% Similarity=0.058 Sum_probs=136.4
Q ss_pred EEEECCCCCeEEeec----------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccC-CCccccccc
Q 010206 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (515)
Q Consensus 40 ~v~~s~~g~~lasg~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (515)
.++|+|||++++++. .++.|.+||..+.+.. .++... ..++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~----- 120 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRF----- 120 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSC-----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCcccc-----
Confidence 699999999999886 3688999999887753 111110 0000
Q ss_pred ccccceeEEEEEeecCCCcEEEeeeC--CCeEEE--EEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCC
Q 010206 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~ 184 (515)
........+++ ++++++++++.. +..+.+ +|..+ ...+ ... . ...+.|+|+
T Consensus 121 -~~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~--~-----------------~~~~~p~g~ 175 (368)
T 1mda_H 121 -SVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSA--S-----------------CFHIHPGAA 175 (368)
T ss_dssp -CBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECS--S-----------------CCCCEEEET
T ss_pred -ccCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECC--C-----------------ceEEccCCC
Confidence 00012446777 677888998864 467888 99887 2222 111 0 112334443
Q ss_pred ccccccccCCCCCCCCCCCcccEEeeeeeeccc---ccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEE
Q 010206 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQ---ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLW 260 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iw 260 (515)
.. +++.+.++.+.+.+ +... +.......... ..-...+. . .+++..++.. . +.+.+.
T Consensus 176 ~~-----------~~~~~~dg~~~~vd--~~~~~~~~~~v~~~~t~~-i~vg~~P~---~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASD--LAAAPAAAGIVGAQCTGA-QNCSSQAA---Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp TE-----------EECCCCTTSCEEEE--CCSSCCCCEECCCCSCTT-SCBCSCCE---E-ETTTTEEEECBS-SCCEEE
T ss_pred eE-----------EEEEcCCCCEEEEE--CccccccCCeEEEEeeee-eeCCCCcc---c-cccCCEEEEEcC-CEEEEE
Confidence 32 13444566655555 2210 00000000000 01111222 3 4555555544 7 899999
Q ss_pred eCCCCCc-ccceecccCccccc---cCCceEEEEEecCCCcEEEEEec---------CCeEEEEecCcccccccccceee
Q 010206 261 NLEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 261 d~~~~~~-~~~~~~~~~~~~~~---~~~~i~~i~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
|+..... ....+.+....... .......++++|++ +.++.+.. ++.+.++|+.+++...+ +.
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~----i~ 311 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----IS 311 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC----CE
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEE----EE
Confidence 9864321 11111110000000 11112226899998 55554432 23566999998875432 22
Q ss_pred eccCCCccccccccccceeEEEEccCCCE-EEEEc--CCeEEEEEeeCCCCCeeeEeeecc
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEH 385 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~ 385 (515)
.. .....++|+|||+. +++.. ++.|.++|+.+ .+.+.++.....
T Consensus 312 vg-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~ 358 (368)
T 1mda_H 312 NG-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG 358 (368)
T ss_dssp EE-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred CC-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCC
Confidence 11 24788999999984 55544 49999999997 777777765443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-06 Score=88.63 Aligned_cols=334 Identities=10% Similarity=0.038 Sum_probs=172.3
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC--CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCC
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 203 (515)
+..+++++.++.|..+|..+++.+............ .....+. ..++. ++..+ +.++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~--~~g~v------------~v~~~ 129 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVN------RGVAV--WKGKV------------YVGVL 129 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCC------CCCEE--ETTEE------------EEECT
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCC------CccEE--ECCEE------------EEEcc
Confidence 347788888899999999999988776543221100 0000000 01111 22333 66777
Q ss_pred cccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecC---CCCEEEEeC------CCcEEEEeCCCCCcccceec
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~ 273 (515)
++.+..+| ..+. +....+... +......+..+| ++..++... ++.|+.||.++++...+...
T Consensus 130 dg~l~AlD--a~TG------~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 130 DGRLEAID--AKTG------QRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp TSEEEEEE--TTTC------CEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEE--CCCC------CEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence 88888877 3222 222221111 111111111122 444444322 68999999998886544321
Q ss_pred cc--Cc-c-----c-------c--------ccCCceEEEEEecCCCcEEEEEecCCe-------------------EEEE
Q 010206 274 VK--PA-N-----M-------E--------DLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLI 311 (515)
Q Consensus 274 ~~--~~-~-----~-------~--------~~~~~i~~i~~~p~~~~~l~~~~~dg~-------------------i~~w 311 (515)
.. +. . + . ++......++++|++ .+++.+..++. |..+
T Consensus 202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 10 00 0 0 0 111112367889987 78888887764 9999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC---EEEEEcC-CeEEEEEeeCCCCCeeeEeeecc-c
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEH-L 386 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~-~ 386 (515)
|.++++..... +..... ..-+. ...++.......+|+ .++.++. |.++++|..+ ++++........ .
T Consensus 281 D~~TG~~~W~~----~~~~~d--~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w 352 (689)
T 1yiq_A 281 NADTGEYVWHY----QTTPGD--AWDYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSW 352 (689)
T ss_dssp ETTTCCEEEEE----ESSTTC--CSCCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSS
T ss_pred EccCCceeEee----ecCCcc--ccccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEecccccccccc
Confidence 99999865431 110000 00000 011222222333565 6777765 9999999987 776643322110 0
Q ss_pred ccccc----------c-c--ccCCC----------ccceeeEEEcCCCCEEEEecC------------------------
Q 010206 387 RPKLC----------D-L--YENDS----------IFDKFECCLSGDGGRVATGSY------------------------ 419 (515)
Q Consensus 387 ~~~~~----------~-~--~~~~~----------~~~v~~~~~s~~~~~l~s~s~------------------------ 419 (515)
...+. . . +.... -..-..++++|+..++++.+.
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 00000 0 0 00000 000124789999888776532
Q ss_pred ---------------------CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec---CCCCC
Q 010206 420 ---------------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNS 475 (515)
Q Consensus 420 ---------------------dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~---~~~~~ 475 (515)
+|.|+.||+.++ +.+-.++.+. +...-.+...+..++.++.||.++.++ |..++
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 478999999988 4444444443 233335555777889999999999943 33334
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEE
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIA 503 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la 503 (515)
...+. ......-+.|..+|+..+
T Consensus 511 ~~~~~-----~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 511 EQPAA-----SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEECS-----SCCCSCCEEEEETTEEEE
T ss_pred eeeCC-----CCcccCceEEEECCEEEE
Confidence 21111 122224477788887544
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-05 Score=69.03 Aligned_cols=177 Identities=11% Similarity=0.023 Sum_probs=102.0
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEE
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~ 310 (515)
.....+++++++..|..+ ..+.|.++++...... .+. .........++++|++..++++... .+.|..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~ 150 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-EEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEE
Confidence 356788999876655554 5789999998643211 111 1112457899999965244444433 468888
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+++..... ..+.. ........+++++++..|+.++ . +.|.++|+.. .. ...+......
T Consensus 151 ~~~dg~~~-----~~~~~-----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~-~~~~~~~~~~-- 210 (267)
T 1npe_A 151 SHMDGTNR-----RILAQ-----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PG-RRKVLEGLQY-- 210 (267)
T ss_dssp EETTSCCC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EE-EEEEEECCCS--
T ss_pred EecCCCCc-----EEEEE-----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-Cc-eEEEecCCCC--
Confidence 88753221 11110 0013468899999888777664 3 8999999863 22 2222111000
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC-CceeeEEECCCC
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR 454 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 454 (515)
-..++.. ++.++++....+.|..+|..++ .....+.... .....+++.|++
T Consensus 211 -------------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 211 -------------PFAVTSY-GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp -------------EEEEEEE-TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECSC
T ss_pred -------------ceEEEEe-CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCcc
Confidence 1255554 3444455556789999999877 3444554332 235677777764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.77 E-value=0.00016 Score=74.51 Aligned_cols=393 Identities=10% Similarity=-0.002 Sum_probs=200.5
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
...|.++...++|.+.+ |+..+-|.+++..+..... +. .+.+........ . ..+ ....
T Consensus 257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-----~~--------~~~f~~~~~~~~-~------~~l-~~~~ 314 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLL-----PE--------QIRFEFIREGDN-N------YSL-SNAS 314 (781)
T ss_dssp CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------------------CEEECBCSS-T------TSB-SSSC
T ss_pred CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeee-----ee--------ccccccccCCCC-C------CCC-CCCe
Confidence 35699999988886554 5553458888876554210 00 000000000000 0 000 0145
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccC-CcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
|.++.. +.++ .|-.|+.++-|..++.............. ..........|. ++...++|..
T Consensus 315 v~~i~~--D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~l-------- 376 (781)
T 3v9f_A 315 ARYIFQ--DSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGKL-------- 376 (781)
T ss_dssp EEEEEE--CSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSCE--------
T ss_pred EEEEEE--eCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCCE--------
Confidence 888877 5555 46677777778999887765444321100 000011112222 3334444443
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceec
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 273 (515)
..|+.++.|..++ ......... ... .......|.++...+++.+.+...++-+..+|..+++... .
T Consensus 377 -----Wigt~~~Gl~~~~--~~~~~~~~~---~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~--~- 442 (781)
T 3v9f_A 377 -----WIGTDGGGINVFE--NGKRVAIYN---KEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI--I- 442 (781)
T ss_dssp -----EEEEBSSCEEEEE--TTEEEEECC---------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE--C-
T ss_pred -----EEEeCCCcEEEEE--CCCCeEEEc---cCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE--e-
Confidence 5556556677666 211100000 000 0123467899998888887775566678888886543211 0
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
.. . ......|.++...+++ .+ ..|+. +.+..||..+++.. .+...... ......|.++...++
T Consensus 443 -~~-~-~~~~~~v~~i~~d~~g-~l-wigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~ 505 (781)
T 3v9f_A 443 -EL-E-KNELLDVRVFYEDKNK-KI-WIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSE 505 (781)
T ss_dssp -CS-T-TTCCCCEEEEEECTTS-EE-EEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTT
T ss_pred -cc-C-CCCCCeEEEEEECCCC-CE-EEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCC
Confidence 00 0 1134678999988887 44 44555 56888998765431 11110000 001256899999999
Q ss_pred CCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCc
Q 010206 354 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 433 (515)
Q Consensus 354 ~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~ 433 (515)
|++.++...+-|..||... .....+...... .-..|.++...++|++.++.. +|.|..||..++..
T Consensus 506 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l-----------~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 506 GRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF-----------CSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp CCEEEEESSSCEEEECTTC--CEEEEECTTTTC-----------SCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred CCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC-----------CCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 9877766544577777653 233333211110 011255888888888666444 66558898876532
Q ss_pred ceeee-cc-CCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 434 ESTTL-EA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 434 ~~~~~-~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
..... .+ ....+.++...++|.+.++ +..|..++ .+..........-......-...++...++|++ ..|+.+|+
T Consensus 572 ~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l-~~g~~~Gl 649 (781)
T 3v9f_A 572 QVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLI-YFGSINGL 649 (781)
T ss_dssp EEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCE-EEEETTEE
T ss_pred EEccccCCCCCceEEEEEECCCCCEEEE-cCCceEEEECCCCceEEecccCCccccccccCceEECCCCEE-EEECCCce
Confidence 21111 11 1345778888888875554 46777776 111111000000000001112346677777764 55666788
Q ss_pred EEEe
Q 010206 511 YMYY 514 (515)
Q Consensus 511 ~i~~ 514 (515)
..|+
T Consensus 650 ~~f~ 653 (781)
T 3v9f_A 650 CFFN 653 (781)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8775
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.76 E-value=8.5e-07 Score=84.80 Aligned_cols=200 Identities=8% Similarity=0.073 Sum_probs=117.6
Q ss_pred CCeEEEEe-c-CCCCEEEEeC-------------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec
Q 010206 235 YHINSISN-N-SDGETFISAD-------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 293 (515)
Q Consensus 235 ~~v~~~~~-~-~~~~~l~s~~-------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p 293 (515)
..+..+++ + |+++++.++. ++.+.+.|.++.+...++. . .+....++++|
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------V---gg~pd~~~~sp 204 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------V---SGNLDNCDADY 204 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------E---SSCCCCEEECS
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE------e---CCCccceEECC
Confidence 45778887 5 8888887761 3578888888765443321 1 11345678999
Q ss_pred CCCcEEEEEecCC---------------eEEEEecCcccccc--------cccceeeeccCCCcc--ccccccccceeEE
Q 010206 294 THCNMLAYSSSKG---------------SIRLIDMRQSALCD--------THSKLFEEQEAPGTR--SFFTEIIASISDI 348 (515)
Q Consensus 294 ~~~~~l~~~~~dg---------------~i~~wd~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~i~~~ 348 (515)
+| +++++.+.+. .|.+.|........ ..+..++........ ..+. -.....++
T Consensus 205 dG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv 282 (595)
T 1fwx_A 205 EG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGC 282 (595)
T ss_dssp SS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCE
T ss_pred CC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEE
Confidence 98 6777766543 35566544321100 011222222100000 0011 11245779
Q ss_pred EEccCCCEEEEEcC--CeEEEEEeeCCCC------------CeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 349 KFARNGRHILSRDY--MTLKLWDINMDSG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 349 ~~s~~~~~l~s~~~--~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
.++|||+++++++. .+|.++|+.+ .+ ......... .-..++|+|+|...
T Consensus 283 ~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~----------------gP~h~aF~~dG~aY 345 (595)
T 1fwx_A 283 NMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGL----------------GPLHTAFDGRGNAY 345 (595)
T ss_dssp EECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCS----------------CEEEEEECTTSEEE
T ss_pred EEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCC----------------CcceEEECCCCeEE
Confidence 99999999998753 8999999985 21 111111111 12378999999444
Q ss_pred EEecCCCcEEEEecCCC---------CcceeeeccCCCce-----eeEEECCCCCeeEeecC
Q 010206 415 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPM-----RRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~ 462 (515)
++.-.|+.|.+||+.+. .+.+.++..|..|- ..+..+|||++|++.+.
T Consensus 346 ~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 346 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 56678999999999862 23446666665543 23456899999988743
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.69 E-value=0.00025 Score=72.95 Aligned_cols=396 Identities=10% Similarity=0.013 Sum_probs=198.7
Q ss_pred cceEEEEECC--CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 36 DIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 36 ~~v~~v~~s~--~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
..|.++.... +|.+.+ ++.++-|..|+..+++.. .+..... ..+. ..
T Consensus 115 ~~i~~i~~d~~~~g~lwi-~t~~~gl~~~~~~~~~~~------------------------~~~~~~~-----~~l~-~~ 163 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLWV-CTYYRGIEYLDIATGKFT------------------------HYNKSTV-----PALP-SE 163 (781)
T ss_dssp SCEEEEEECSSTTSEEEE-EESSSCEEEEETTTTEEE------------------------EESTTTC-----TTCS-CC
T ss_pred CcceEEEecCccCCCEEE-EECCCCeeEEECCCCeEE------------------------eeccCcc-----cCCC-cc
Confidence 3688998888 776544 553444888887654421 0000000 0000 13
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
.|.++.. ..++ .|..++.++-|..||..+++..........+ .......+. .+...++|..
T Consensus 164 ~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~l-------- 224 (781)
T 3v9f_A 164 QTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNP-NSLPGNDVR-------CIYKDTNGNI-------- 224 (781)
T ss_dssp CEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC---------CCSSEE-------EEEECTTCCE--------
T ss_pred ceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCc-ccCCCCcee-------EEEEcCCCCE--------
Confidence 4777766 3344 5666776656889998887654432111000 000111222 3334444543
Q ss_pred CCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceec
Q 010206 194 SNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 194 ~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 273 (515)
..++.. .+.+|| ..................-....|.++...+++.+.+....+-|.++|..+..... ...
T Consensus 225 -----wigt~~-Gl~~~d--~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~ 295 (781)
T 3v9f_A 225 -----WIGTSK-GLALFN--ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLL-PEQ 295 (781)
T ss_dssp -----EEEETT-EEEEEE--TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------
T ss_pred -----EEEeCC-cHheEC--CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeee-eec
Confidence 334444 566666 22111100000000000012356899999888877665554568888887543211 000
Q ss_pred -------ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 274 -------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 274 -------~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
............|.++...++| . |-.|+.++-|..|+...... ..+.......... .-....|.
T Consensus 296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~~--~l~~~~v~ 366 (781)
T 3v9f_A 296 IRFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTF-----HTWSYSPTQMNES--SLSNKVVS 366 (781)
T ss_dssp --CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSC-----EEEC----CCCSS--CCSSSCEE
T ss_pred cccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcc-----eeeccCccccccC--CCCCcceE
Confidence 0000011234679999999887 4 55577777888888765432 1111000000000 00124689
Q ss_pred EEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEE
Q 010206 347 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw 426 (515)
++...++|.+.+...++-|..||..+ . ....+...... .-..|.++...++|++.+ |+.++.|..+
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~~~~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~ 432 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGK-R-VAIYNKENREL-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYY 432 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTE-E-EEECC-----C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCC-C-eEEEccCCCCC-----------CCcceEEEEECCCCCEEE-EeccCCEEEE
Confidence 99998888766654456688888653 1 11111100000 011255888888887655 6666778899
Q ss_pred ecCCCCcceeee-ccCCCceeeEEECCCCCeeEeecCCCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 427 GCSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 427 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
+..++....... ......|.++...+++.+.+.. ..|..++ .+..+................|.++...++|++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig 511 (781)
T 3v9f_A 433 NTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG 511 (781)
T ss_dssp CSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred cCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence 987653221111 1234678888888887755444 4665555 122111100000000011467899999999887665
Q ss_pred EcCCcEEEEe
Q 010206 505 AASNSLYMYY 514 (515)
Q Consensus 505 ~~~~~~~i~~ 514 (515)
...+|++.|+
T Consensus 512 t~~~Gl~~~~ 521 (781)
T 3v9f_A 512 TFGGGVGIYT 521 (781)
T ss_dssp ESSSCEEEEC
T ss_pred EcCCCEEEEe
Confidence 5557888774
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-06 Score=85.09 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=51.3
Q ss_pred CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeec
Q 010206 306 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 306 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
|.|..||+.+++...+. . +..++....+..++..++.++. +.+++||..+ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~~----~-------------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSV----E-------------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEE----E-------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeec----C-------------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 67899999888764331 1 1123344456667778888765 9999999997 88888887554
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEE
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVA 415 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 415 (515)
... ..-+.+..+|+.++
T Consensus 519 ~~~--------------~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVV--------------AAPSTYMVDGRQYV 535 (677)
T ss_dssp CCC--------------SCCEEEEETTEEEE
T ss_pred Ccc--------------cCCEEEEeCCEEEE
Confidence 321 11466777887544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.8e-06 Score=77.55 Aligned_cols=212 Identities=11% Similarity=0.049 Sum_probs=119.2
Q ss_pred CCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccc
Q 010206 246 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 324 (515)
Q Consensus 246 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 324 (515)
+..+..+ .++.|..+|.. ++.... .......+.++...+++ . +..++.++.+..||.. ++....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~--------~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~--- 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWR--------FKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWR--- 171 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEE--------EECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEE---
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEE--------EcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEE---
Confidence 3345555 78899999987 543322 11223345566677776 4 5667888999999987 553221
Q ss_pred eeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 325 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
+... ...+.++.+.+++.+.++. +.|..+| .+ ++....+...... +.+
T Consensus 172 -~~~~------------~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~ 219 (330)
T 3hxj_A 172 -FKTN------------DAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR 219 (330)
T ss_dssp -EECS------------SCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred -EecC------------CCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence 1111 1346667777778766555 7889998 43 5544443322211 337
Q ss_pred EEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccc
Q 010206 405 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 484 (515)
Q Consensus 405 ~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~ 484 (515)
+..+++|.+. .++.++.|..++. ++ .....+......+..+...+++ .|..++.+|.+..++.. + +......
T Consensus 220 ~~~~~~g~l~-v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~---g-~~~~~~~ 291 (330)
T 3hxj_A 220 PAISEDGTIY-VTSLDGHLYAINP-DG-TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD---G-TEKWNFE 291 (330)
T ss_dssp CEECTTSCEE-EEETTTEEEEECT-TS-CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT---S-CEEEEEE
T ss_pred eEECCCCeEE-EEcCCCeEEEECC-CC-CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC---C-cEEEEEE
Confidence 7888887654 4566778888874 33 3334444444444556665555 45556667655553211 0 0000111
Q ss_pred cccCCeeEEEEcCCCCEEEEEcCCcEEEE
Q 010206 485 DFSMKLLHLAWHPSENSIACAASNSLYMY 513 (515)
Q Consensus 485 ~~~~~i~~~~~s~~~~~la~~~~~~~~i~ 513 (515)
.....+.++...+++++. +++.+|++.+
T Consensus 292 ~~~~~~~~~~~d~~g~l~-~gt~~G~~~~ 319 (330)
T 3hxj_A 292 TGSWIIATPVIDENGTIY-FGTRNGKFYA 319 (330)
T ss_dssp CSSCCCSCCEECTTCCEE-EECTTSCEEE
T ss_pred cCCccccceEEcCCCEEE-EEcCCCeEEE
Confidence 123456777787887754 4665665443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-06 Score=81.11 Aligned_cols=261 Identities=10% Similarity=0.021 Sum_probs=146.7
Q ss_pred CCCCeEEeecC-CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeec
Q 010206 45 KSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (515)
Q Consensus 45 ~~g~~lasg~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~ 123 (515)
+||++|..... +++|.+.|+.+.+.... ..+.. ......+++...
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~i---------------------i~ip~-------------g~~phg~~~~~~ 144 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAI---------------------LEIPN-------------AKGIHGLRPQKW 144 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEE---------------------EECSS-------------CCSEEEEEECCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeE---------------------EeCCC-------------CCCCcceeeeec
Confidence 38888877664 56899999987664310 01110 133666666322
Q ss_pred CCCcEEEeee------------------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 124 ANSALYLLST------------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 124 ~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
+++.++++++ .++.+.+.|..+.+..........+. .++++|+|+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd----------------~~~~spdGk~ 208 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD----------------NCDADYEGKW 208 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC----------------CEEECSSSSE
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc----------------ceEECCCCCE
Confidence 5666777763 35689999999988777666532221 6778888887
Q ss_pred cccccccCCC------------CCCC------------CCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEE
Q 010206 186 GERNFGCASN------------DSSF------------PPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINS 239 (515)
Q Consensus 186 l~~~~~~~~~------------~~~~------------~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (515)
+-........ +.+. .|. .-+.+.+.| ....+.. ...... .-.....+
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID--~~~~~~~---~~~~~I--pvg~~PhG 281 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD--GRKEASS---LFTRYI--PIANNPHG 281 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE--CSGGGCC---SSEEEE--EEESSCCC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe--CcccCCc---eeEEEE--ecCCCceE
Confidence 7433211100 0000 000 002355544 2211000 001111 11235678
Q ss_pred EEecCCCCEEEEe--CCCcEEEEeCCCCCcccc-eecccC---ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 240 ISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 240 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
+.++|||++++++ .+.+|.++|+.+.+.... .++... ... .-......++|+|+| ...++...|+.|.+||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 9999999998886 599999999985421100 000000 011 123457899999999 77778888999999998
Q ss_pred Cccc------ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeE-----------EEEEee
Q 010206 314 RQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTL-----------KLWDIN 371 (515)
Q Consensus 314 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i-----------~iwd~~ 371 (515)
.... .....+..+..+. -.+|...-..+.++|||++|++... .++ .++|+.
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~y-------qpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHY-------QPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDIS 430 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSS-------CEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECS
T ss_pred hHhhhhhcccccceeEEEeeccc-------ccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcC
Confidence 7631 1111222222221 1133333344567899999999643 344 889985
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-08 Score=94.05 Aligned_cols=176 Identities=8% Similarity=0.007 Sum_probs=86.9
Q ss_pred CCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccc
Q 010206 245 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 323 (515)
Q Consensus 245 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 323 (515)
++..++++ .|+.|+.||..+++...+. .. +.+.+..+..++ .++++++.|+.|+.||..+++...+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~--------~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL--------KE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE--------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe--------cC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeee
Confidence 45667776 8999999999988765432 11 334444455666 678878899999999998887532211
Q ss_pred ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccce
Q 010206 324 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
. .... . ....++ +. ++..+++++ ++.|+.||..+ ++.+..+..+.
T Consensus 77 ~--~~~~-------~-~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------ 122 (369)
T 2hz6_A 77 F--TIPE-------L-VQASPC----RS-SDGILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------ 122 (369)
T ss_dssp C--CHHH-------H-HTTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred c--cCcc-------c-cccCce----Ee-cCCEEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence 0 0000 0 000111 11 233455554 48999999987 76665554432
Q ss_pred eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCC---CeeEeecCCCeEEEe
Q 010206 403 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRRV 469 (515)
Q Consensus 403 ~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~l~ 469 (515)
...++|++..|++++.|+.|+.||.++++.+ ..+..+. ....++.++. ..++.++.||.+..+
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCC-CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEeccc--ccCccccCCccccceEEEECCCCEEEEE
Confidence 1234568888999999999999999988433 3332211 1233344432 456677888988873
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-05 Score=70.23 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=88.3
Q ss_pred eEEEEecC-CCCEEEEe-C-----------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCc
Q 010206 237 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 297 (515)
Q Consensus 237 v~~~~~~~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~ 297 (515)
...+++.+ +|.++++- . ++.|..+|..+.+... +.........++++|++ +
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---------~~~~~~~p~gia~~~dg-~ 197 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---------LLKELHVPGGAEVSADS-S 197 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---------EEEEESCCCEEEECTTS-S
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---------eccCCccCcceEECCCC-C
Confidence 45677777 77666653 2 3667778876443211 01112334679999998 6
Q ss_pred EE-EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----------CeE
Q 010206 298 ML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----------MTL 365 (515)
Q Consensus 298 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----------~~i 365 (515)
.| ++-...+.|..|++..... .....+.. ..+ ...+++.++|++.++... +.|
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKK--GTAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTT--TCEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcC--CccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 44 4445678999999875321 00111111 012 577899999987776422 456
Q ss_pred EEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 366 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..+|.. ++.+..+....... ...+..+++ .+++++++....+.|..+++...
T Consensus 263 ~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 263 IKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 666643 66666665433210 111235666 46676667667889999998643
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.7e-06 Score=77.67 Aligned_cols=275 Identities=8% Similarity=0.022 Sum_probs=136.9
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCC-CCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCc
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~ 204 (515)
+..+++++.++.|..+|..+++................ ...+ ......++..+ +.++.+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v------------~v~~~~ 112 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALL--------SGGVTVSGGHV------------YIGSEK 112 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCE--------EEEEEEETTEE------------EEEETT
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccc--------ccCceEeCCEE------------EEEcCC
Confidence 45788888899999999999987766554321100000 0000 01111223333 566677
Q ss_pred ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccC-cccccc
Q 010206 205 SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDL 282 (515)
Q Consensus 205 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~ 282 (515)
+.+..+| ..+. +....+. ........... .++ .++.+ .++.|..+|.++++.........+ ......
T Consensus 113 g~l~a~d--~~tG------~~~W~~~-~~~~~~~~p~~-~~~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 113 AQVYALN--TSDG------TVAWQTK-VAGEALSRPVV-SDG-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp SEEEEEE--TTTC------CEEEEEE-CSSCCCSCCEE-ETT-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CEEEEEE--CCCC------CEEEEEe-CCCceEcCCEE-ECC-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 7888777 2221 1111111 11010011111 134 55555 789999999988875543210000 000000
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC-ccccccccccceeEEEEccCCCEEEEEc
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG-TRSFFTEIIASISDIKFARNGRHILSRD 361 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 361 (515)
...... + ..++.++.++.+..+|..+++...+... ....... ..........++ + .+..++.++
T Consensus 182 ----~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~p~----~--~~~~v~~~~ 246 (376)
T 3q7m_A 182 ----SAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRI--SQATGSTEIDRLSDVDTTPV----V--VNGVVFALA 246 (376)
T ss_dssp ----CCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEEC--CC-----------CCCCCCE----E--ETTEEEEEC
T ss_pred ----CCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEec--ccCCCCcccccccccCCCcE----E--ECCEEEEEe
Confidence 111222 3 3677788899999999998876432110 0000000 000000000111 1 234555555
Q ss_pred -CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-
Q 010206 362 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE- 439 (515)
Q Consensus 362 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~- 439 (515)
++.+..+|..+ ++.+-...... ...+.. ++..|+.++.++.|..+|..+++.+ ....
T Consensus 247 ~~g~l~~~d~~t-G~~~w~~~~~~-----------------~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~ 305 (376)
T 3q7m_A 247 YNGNLTALDLRS-GQIMWKRELGS-----------------VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSD 305 (376)
T ss_dssp TTSCEEEEETTT-CCEEEEECCCC-----------------EEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECT
T ss_pred cCcEEEEEECCC-CcEEeeccCCC-----------------CCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-Eeecc
Confidence 48999999986 65544332111 112333 4667778888999999999988433 3332
Q ss_pred cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 440 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 440 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
........... .+..|..++.+|.+..+
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 11222223333 24577788888888773
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-05 Score=68.44 Aligned_cols=212 Identities=8% Similarity=-0.007 Sum_probs=128.1
Q ss_pred ccccc--ceEEEEECCCCCeEEeecC--CCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~--~v~~v~~s~~g~~lasg~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
+.|.. ...-++|+||+.+.++.+. ++.|.+.|+.+++.... ..+..+
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~---------------------i~l~~~-------- 65 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI---------------------HKMDDS-------- 65 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE---------------------EECCTT--------
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE---------------------EecCCC--------
Confidence 34443 3578999999765555443 57999999998875311 011111
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
.....+++ .. +..+++.-.++.+.++|..+.+........ .+. ...+++||+.+
T Consensus 66 -----~fgeGi~~--~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~~l- 119 (266)
T 2iwa_A 66 -----YFGEGLTL--LN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGKIL- 119 (266)
T ss_dssp -----CCEEEEEE--ET-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSSSE-
T ss_pred -----cceEEEEE--eC-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCCEE-
Confidence 11234555 32 334444556899999999998877665433 111 45677888877
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEIS 265 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 265 (515)
+.+..++.+.+.| ..+.+. .........+ .-..++.+.|. ++..++.. .++.|.+.|+.++
T Consensus 120 -----------~vs~gs~~l~viD--~~t~~v---~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 120 -----------YGSDGTSILYEID--PHTFKL---IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp -----------EEECSSSEEEEEC--TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred -----------EEECCCCeEEEEE--CCCCcE---EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 5555678888877 222111 1111110011 11246778887 77666555 6899999999987
Q ss_pred CcccceecccCc--c--cc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 266 NQSFNIVDVKPA--N--ME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 266 ~~~~~~~~~~~~--~--~~--~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
+.... +++... . .. ........|+|+|++.++++++...+.+...++...
T Consensus 183 ~V~~~-I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 183 TLLGW-ILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CEEEE-EECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cEEEE-EECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 65432 222100 0 00 012457899999998677888888899988887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-05 Score=69.88 Aligned_cols=194 Identities=11% Similarity=-0.007 Sum_probs=122.6
Q ss_pred CCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+.|++++.++++. . ++.|+++|+.+++....+ .+..+ .....+++. +..+.++.-.++.+.++
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------~l~~~-~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------KMDDS-YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------ecCCC-cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 346899999987666664 2 689999999988755332 11111 122355565 32566666678999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|..+.+...+ +.... -....+++||+.++.++. +.|.++|..+ .+.+..+.......
T Consensus 92 D~~t~~v~~~----i~~g~--------------~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~--- 149 (266)
T 2iwa_A 92 DRRTLSNIKN----FTHQM--------------KDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGH--- 149 (266)
T ss_dssp ETTTTEEEEE----EECCS--------------SSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred ECCCCcEEEE----EECCC--------------CCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCc---
Confidence 9998775432 22110 012335668887777655 8999999986 67666665432210
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC-------------CCceeeEEECCCCCe-
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPS- 456 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~- 456 (515)
.+...+.+.|. +|+..+....++.|.+.|..+++ ....+... ....+.++++|+++.
T Consensus 150 -------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~-V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 150 -------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGT-LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCC-EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred -------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCc-EEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 01112367777 77666666678899999999884 33444321 134579999999864
Q ss_pred eEeecCCCeEEE
Q 010206 457 RPLGSLSGVVRR 468 (515)
Q Consensus 457 l~s~~~d~~v~l 468 (515)
++++.....+..
T Consensus 221 fVTgk~~~~v~~ 232 (266)
T 2iwa_A 221 FVTGKLWPKLFE 232 (266)
T ss_dssp EEEETTCSEEEE
T ss_pred EEECCCCCeEEE
Confidence 566656666665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-05 Score=76.13 Aligned_cols=177 Identities=14% Similarity=0.154 Sum_probs=100.1
Q ss_pred EEEecCCCCEEEEe-CCC-------------------cEEEEeCCCCCcccceecccCccccccC-------CceEEEEE
Q 010206 239 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMEDLT-------EVITSAEF 291 (515)
Q Consensus 239 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~i~~ 291 (515)
.++++++...+..+ .++ .|..+|.++++...+.. ...|. .++....+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~------~~~~~~wd~~~~~~~~~~d~ 307 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ------VTPGDSWDFTATQQITLAEL 307 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE------SSTTCCSCCCCCSCEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee------cCCCccccccCCCCcEEEEe
Confidence 46788887787776 554 49999999887654321 11121 23333333
Q ss_pred ecCCCc---EEEEEecCCeEEEEecCcccccccccce---eeeccC--CCc-----cc--------cccccc--cceeEE
Q 010206 292 HPTHCN---MLAYSSSKGSIRLIDMRQSALCDTHSKL---FEEQEA--PGT-----RS--------FFTEII--ASISDI 348 (515)
Q Consensus 292 ~p~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~~--~~~-----~~--------~~~~~~--~~i~~~ 348 (515)
..++ + .++.++.+|.+.++|.++++.+...... +...-. ... .. .+.+.. ..-..+
T Consensus 308 ~~~G-~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~ 386 (668)
T 1kv9_A 308 NIDG-KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM 386 (668)
T ss_dssp EETT-EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred ccCC-cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence 3455 3 6888999999999999999875221000 000000 000 00 000000 001225
Q ss_pred EEccCCCEEEEE------------------------------------cC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 349 KFARNGRHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 349 ~~s~~~~~l~s~------------------------------------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+++|+...++.. .. |.|..||+.+ ++.+-........
T Consensus 387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~----- 460 (668)
T 1kv9_A 387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW----- 460 (668)
T ss_dssp EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC-----
T ss_pred eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC-----
Confidence 677766555431 12 6788888876 6555444332211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 440 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 440 (515)
....+...+.+++.++.||.|+.||.++++ ++..++.
T Consensus 461 -----------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~-~l~~~~~ 497 (668)
T 1kv9_A 461 -----------NGGTLSTAGNLVFQGTAAGQMHAYSADKGE-ALWQFEA 497 (668)
T ss_dssp -----------CCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEEC
T ss_pred -----------cCceeEeCCCEEEEECCcccchhhhhhcCh-hheEecC
Confidence 133455578889999999999999999884 4444443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-05 Score=68.50 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=111.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCC--cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010206 235 YHINSISNNSDGETFISA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~w 311 (515)
.....+.|+ ++.++.+. .+| .|+.+|+++++...++ .+.. ...--.+++. +.++.+..-.++.+.+|
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------ELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------ECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------ecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 334789998 66655554 444 9999999988755432 1111 1111234444 32566666668999999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
|..+.+...+ +... -....++++++.|+..+. +.|.++|..+ .+.+.++.......
T Consensus 113 D~~t~~~~~t----i~~~---------------~eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~--- 169 (262)
T 3nol_A 113 NIRNLRQVRS----FNYD---------------GEGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE--- 169 (262)
T ss_dssp ETTTCCEEEE----EECS---------------SCCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE---
T ss_pred ECccCcEEEE----EECC---------------CCceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc---
Confidence 9998876432 2211 122334467777777654 8899999986 67777766532110
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC------------CCceeeEEECCCCCeeE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRP 458 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~ 458 (515)
.+..+..+.|. +|+..+..-.++.|.+.|.++++ ....+... .+-.+.++++|+++.|.
T Consensus 170 -------~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~-V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 170 -------ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK-VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB-EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred -------cccccceeEEE-CCEEEEEEccCCeEEEEECCCCc-EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 01112246676 77766666578899999999884 33333321 23457899999876554
Q ss_pred ee
Q 010206 459 LG 460 (515)
Q Consensus 459 s~ 460 (515)
..
T Consensus 241 VT 242 (262)
T 3nol_A 241 VT 242 (262)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-05 Score=65.83 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=113.4
Q ss_pred cccccc--eEEEEECCCCCeEEeecCCC--eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 32 VQEVDI--ISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 32 ~~h~~~--v~~v~~s~~g~~lasg~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..|... ...+.|+ ++.+..+.+.+| .|+++|+.+++.. ....-.
T Consensus 37 ~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------- 84 (262)
T 3nol_A 37 YPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------- 84 (262)
T ss_dssp EECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC--------
T ss_pred ecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC--------
Confidence 345433 4788998 677777776665 8999999988753 111110
Q ss_pred ccccccee--EEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 108 SLEIEEKI--NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 108 ~~~~~~~v--~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
... ..+.. .. +..+.+.-.++.+.+||..+.+.......... ...+.+|++.
T Consensus 85 -----~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~ 138 (262)
T 3nol_A 85 -----KRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQY 138 (262)
T ss_dssp -----TTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSC
T ss_pred -----CccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCE
Confidence 112 22444 22 23444445689999999999988777665421 4466677877
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCc-CCeEEEEecCCCCEEEEe-CCCcEEEEeCC
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLE 263 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 263 (515)
| +....++.|.++| ..+.+. .........+.. ..++.+.|. +|+.++.. .+..|.+.|.+
T Consensus 139 L------------~~SdGs~~i~~iD--p~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 139 L------------IMSDGTPVLRFLD--PESLTP---VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp E------------EECCSSSEEEEEC--TTTCSE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred E------------EEECCCCeEEEEc--CCCCeE---EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 6 5555577888877 222111 111111111111 345567776 77766666 68899999999
Q ss_pred CCCcccceecccC---cc--ccccCCceEEEEEecCCCcEEEEE
Q 010206 264 ISNQSFNIVDVKP---AN--MEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 264 ~~~~~~~~~~~~~---~~--~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
+++... .+++.. .. ........+.|+|+|++.+++++|
T Consensus 201 tG~V~~-~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTG-IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEE-EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEE-EEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 876443 332221 00 011134578999999984455544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00043 Score=62.16 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=104.8
Q ss_pred CeEEEEecCCCCEEEEe-CC--CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
.+..++++++++++++. .. ..|..+|..+++.. .+... . .......++..+++ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 46788999999877665 32 24666776654422 11111 1 11223455555554 5555544688899998
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCC--eeeEeeeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~--~~~~~~~~~~~~ 388 (515)
...+.... ......-.. ......-.....+ +|+++.|+.++. +.|..+++...+.. ...+.... .
T Consensus 145 ~~~~~~~v---~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~-~-- 213 (306)
T 2p4o_A 145 VVQPSGSI---WLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT-N-- 213 (306)
T ss_dssp TTTTEEEE---EEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC-C--
T ss_pred CCCCcEeE---EEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC-C--
Confidence 76532100 000000000 0000000123445 788888777653 89999998742221 11111100 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc-eeeeccCCCceeeEEEC---CCCCeeEeec
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS 461 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~s~~ 461 (515)
...++++++|+++++....+.|.+++.. ++.. ...+.......+++++. |+++.|...+
T Consensus 214 -------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 214 -------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp -------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred -------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 1278999999988877778899999975 4221 12233333557889998 7877665544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.5e-05 Score=66.66 Aligned_cols=183 Identities=11% Similarity=-0.024 Sum_probs=113.1
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.....+.|+. +.++.+. .+|.|+.+|+++++...++ +.+ ...-..+++. +.++.+....++.+.+||.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLASD--GERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEEC--SSCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEEe--CCEEEEEEccCCEEEEEEC
Confidence 4457888874 4455554 7888999999988765433 211 1111335554 3356666677999999999
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.+.+...+ +... ..-..+ ++|++.|+.++. +.|.++|..+ .+.+.++.......
T Consensus 124 ~Tl~~~~t----i~~~-------------~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~----- 178 (268)
T 3nok_A 124 MPPQRERT----TRYS-------------GEGWGL--CYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ----- 178 (268)
T ss_dssp TTTEEEEE----EECS-------------SCCCCE--EEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE-----
T ss_pred CcCcEEEE----EeCC-------------CceeEE--ecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc-----
Confidence 99876432 2211 111233 356788877664 8999999986 77777766543221
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-------------CCCceeeEEECCCCCee-E
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPSR-P 458 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l-~ 458 (515)
.+..+..+.|. +|+..+..-.++.|.+.|.++++ ....+.. ..+-.+.+++.|+++.| +
T Consensus 179 -----~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 179 -----PVELINELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp -----ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred -----ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 11112356776 77666655578899999999884 3333321 12356889999976544 4
Q ss_pred ee
Q 010206 459 LG 460 (515)
Q Consensus 459 s~ 460 (515)
+|
T Consensus 252 TG 253 (268)
T 3nok_A 252 TG 253 (268)
T ss_dssp EE
T ss_pred eC
Confidence 43
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00042 Score=59.49 Aligned_cols=176 Identities=11% Similarity=0.126 Sum_probs=95.7
Q ss_pred CeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc--ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..-.+++.+++.++++. .++.+.++++....... ....+. ......+...-.++|+|.+ ..|.++.......+|.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~-~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIP-LQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECC-CSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc-cccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence 34567777888776766 67888888876554311 111110 0011234557899999998 5566566655556666
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCC-EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
+. +................ -..+...+.+++++|... +++..+. ..|.++|.. ++.+..+....+.-...
T Consensus 149 ~~-g~~~~~~l~i~~~~~~~-----~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~ 220 (255)
T 3qqz_A 149 VN-GLLSSNELHISKDKALQ-----RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLS 220 (255)
T ss_dssp EE-STTCSSCCEEEECHHHH-----HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCS
T ss_pred Ec-ccccCCceeeecchhhc-----cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcc
Confidence 54 21110111111110000 000123578999999544 4444444 889999876 66666665443210000
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
..+..-..++|.++|++.++ ++.+.++.|.-
T Consensus 221 ------~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 221 ------HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp ------SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ------cccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 01111237999999985555 67777777654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00012 Score=61.81 Aligned_cols=192 Identities=9% Similarity=0.044 Sum_probs=113.7
Q ss_pred eeeeeccCcCCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEE
Q 010206 226 RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS 302 (515)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~ 302 (515)
.+.+..........+.|++ +.++.+. . ...|+.+|+.+++...++ .+..+ ..--.+++. +.++....
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~-~fgeGi~~~--~~~ly~lt 81 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPP-YFGAGIVAW--RDRLIQLT 81 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCC-cceeEEEEe--CCEEEEEE
Confidence 3444233345567899987 4555553 3 469999999988755332 11111 111334444 32566666
Q ss_pred ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEe
Q 010206 303 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 303 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~ 381 (515)
-.++.+.+||..+.+...+ +... . ....+.+++..|+.++. +.|.++|..+ .+.+.++.
T Consensus 82 w~~~~v~v~D~~tl~~~~t----i~~~-------------~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTPRAR----FRYP-------------G--EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIK 141 (243)
T ss_dssp SSSSEEEEEETTTTEEEEE----EECS-------------S--CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEE
T ss_pred eeCCEEEEEECCcCcEEEE----EeCC-------------C--CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEE
Confidence 7799999999998876432 2211 1 12233456776666554 8999999986 77777766
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc-------------CCCceeeE
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQ 448 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-------------~~~~v~~~ 448 (515)
...... .+..+..+.+. +|+..+..-.+..|.+.|.++++ ....+.. ..+-.+.+
T Consensus 142 V~~~g~----------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V~~~idl~~l~~~~~~~~~~~~~vlNGI 209 (243)
T 3mbr_X 142 VTAGGR----------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGK-VVAWIDLQALVPDADALTDSTNDVLNGI 209 (243)
T ss_dssp CEETTE----------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-EEEEEECGGGSTTTTSCCCTTSSCEEEE
T ss_pred EccCCc----------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-EEEEEECCcCccccccccCCcCCceEEE
Confidence 543211 11112355655 67666555567899999999884 3333321 12345789
Q ss_pred EECCCCCeeEe
Q 010206 449 VQTPSRPSRPL 459 (515)
Q Consensus 449 ~~~~~~~~l~s 459 (515)
++.|+++.|..
T Consensus 210 A~d~~~~~lfV 220 (243)
T 3mbr_X 210 AFDAEHDRLFV 220 (243)
T ss_dssp EEETTTTEEEE
T ss_pred EEcCCCCEEEE
Confidence 99997655433
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=0.0014 Score=58.82 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
....+ +|++..++++-...+.|..|++.. +... ....+.. ......++++++|+++++...
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~-------------~~~P~gi~vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE-------------QTNIDDFAFDVEGNLYGATHIY 232 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE-------------SCCCSSEEEBTTCCEEEECBTT
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec-------------cCCCCCeEECCCCCEEEEeCCC
Confidence 34556 788734555556678999999875 3221 0111110 023567899999987666544
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc---CCCCEEEEecCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS---GDGGRVATGSYS 420 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~s~d 420 (515)
+.|.++|.. ++.......... ....++++|. |+++.|+..+..
T Consensus 233 ~~V~~~~~~--G~~~~~~~~~~~-------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 233 NSVVRIAPD--RSTTIIAQAEQG-------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCEEEECTT--CCEEEEECGGGT-------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CeEEEECCC--CCEEEEeecccc-------------cCCceEEEEecccCCCCEEEEECCC
Confidence 889998864 433211111111 1113489998 887777655543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00043 Score=62.71 Aligned_cols=194 Identities=11% Similarity=0.024 Sum_probs=110.6
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCc-------------cccccCCceEEEEEec-CCCcEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-------------NMEDLTEVITSAEFHP-THCNML 299 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~i~~~p-~~~~~l 299 (515)
....+++|+++++++.++ .++.|..||....... .+. .... ........+..+++.+ ++ + |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFA-YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEE-ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEe-cccccccccccccccchhccccCCCCceEEEcCCCC-c-E
Confidence 456688999999866676 7899999988754321 110 0000 0001124578999998 65 4 4
Q ss_pred EEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEcC----------------
Q 010206 300 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY---------------- 362 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~---------------- 362 (515)
+.+...+.|..+|..++.. ..+..... .........+++.+ +|++.++-..
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~ 162 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTC
T ss_pred EEEECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccC
Confidence 4455556688888775532 11110000 00012467899999 9987776321
Q ss_pred --CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCc-ceeee
Q 010206 363 --MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTL 438 (515)
Q Consensus 363 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~-~~~~~ 438 (515)
+.|..||... ++ +..+...... ...++++|+|++|+.+ +..+.|..|++..... ....+
T Consensus 163 ~~g~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 163 KTGRLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp CCEEEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred CCceEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence 5677777653 22 2222111111 1278999999865544 6678999999875311 11111
Q ss_pred ccCCCceeeEEECCCCCeeEeecC
Q 010206 439 EASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 439 ~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
..... ...+++.++|.+.++...
T Consensus 226 ~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 226 VKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EECSS-EEEEEECTTSCEEEEEEE
T ss_pred EeCCC-CCCeEECCCCCEEEEecC
Confidence 11112 667899999987666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0003 Score=69.01 Aligned_cols=29 Identities=3% Similarity=0.016 Sum_probs=23.8
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
+..+++++.|+.|..+|..+++.......
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 143 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecC
Confidence 34788888899999999999998776554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00012 Score=62.46 Aligned_cols=190 Identities=9% Similarity=0.098 Sum_probs=113.2
Q ss_pred eEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEE
Q 010206 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (515)
Q Consensus 38 v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (515)
...+.|+ ++.+..+.+.+|.|+++|+.+++..... +... .--..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~----------------------l~~~-------------~FgeG 100 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME----------------------RLGN-------------IFAEG 100 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE----------------------ECTT-------------CCEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE----------------------CCCC-------------cceeE
Confidence 4678887 4667777788889999999988754110 1111 01123
Q ss_pred EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 118 l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
+++ .. +..+.+.-.++.+.+||..+.+.......... ...+.+|++.|
T Consensus 101 it~--~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e------------------GwGLt~Dg~~L----------- 148 (268)
T 3nok_A 101 LAS--DG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE------------------GWGLCYWNGKL----------- 148 (268)
T ss_dssp EEE--CS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSC------------------CCCEEEETTEE-----------
T ss_pred EEE--eC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCc------------------eeEEecCCCEE-----------
Confidence 444 32 34455556789999999999988777665321 34556778877
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeecc-CcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+....++.|.++| ..+.+. .........+ .-..++.+.|. +|+.++.. .+..|.+.|.++++.. ..+++.
T Consensus 149 -~vSdGs~~l~~iD--p~T~~v---~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~ 220 (268)
T 3nok_A 149 -VRSDGGTMLTFHE--PDGFAL---VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDAS 220 (268)
T ss_dssp -EEECSSSEEEEEC--TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECH
T ss_pred -EEECCCCEEEEEc--CCCCeE---EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECC
Confidence 5556678888877 222211 1111110011 11245677776 77666666 6889999999887643 333222
Q ss_pred C---cc---ccccCCceEEEEEecCCCcEEEEEe
Q 010206 276 P---AN---MEDLTEVITSAEFHPTHCNMLAYSS 303 (515)
Q Consensus 276 ~---~~---~~~~~~~i~~i~~~p~~~~~l~~~~ 303 (515)
. .. ...-....+.|+++|++.+++++|-
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1 00 1112346789999998756666553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00088 Score=58.70 Aligned_cols=219 Identities=7% Similarity=-0.037 Sum_probs=122.4
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++++..|..+ ..+.|..+++...... .+ ..........++++|++..++++-...+.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~-------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TI-------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EE-------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EE-------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 356789999976666655 5889999998754321 11 1112246789999997535566656678999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----CCeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
+..... ..+... .......++++|++..|+.++ .+.|..+++. +.....+.... .
T Consensus 108 ~~g~~~-----~~~~~~-----------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~~~~-~-- 166 (267)
T 1npe_A 108 MDGTQR-----RVLFDT-----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILAQDN-L-- 166 (267)
T ss_dssp TTSCSC-----EEEECS-----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEECTT-C--
T ss_pred cCCCCE-----EEEEEC-----------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEEECC-C--
Confidence 864321 111100 012467899999766555443 2578777775 33333332110 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
..-..++++++++.|+ +-...+.|.++++... .....+..-.. ...++.. .+..+++....+.|.
T Consensus 167 -----------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~-P~gi~~d-~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 167 -----------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVI 232 (267)
T ss_dssp -----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEE
T ss_pred -----------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCCC-ceEEEEe-CCEEEEEECCCCeEE
Confidence 0123799999877655 5556789999998743 22223332222 3456554 344444444556776
Q ss_pred EecC--CCCCccccCCccccccCCeeEEEEcCCCC
Q 010206 468 RVKG--ADNSALDANGNAFDFSMKLLHLAWHPSEN 500 (515)
Q Consensus 468 l~~~--~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 500 (515)
.++. .+... .+.. +.......+++.|++.
T Consensus 233 ~~d~~~g~~~~-~i~~---g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 233 AMDLAISKEMD-TFHP---HKQTRLYGITIALSQC 263 (267)
T ss_dssp EEETTTTEEEE-EECC---SSCCCCCCEEEECSCC
T ss_pred EEeCCCCCceE-EEcc---ccccccceeeecCccC
Confidence 6332 11110 1111 1112356777777764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-05 Score=74.54 Aligned_cols=59 Identities=10% Similarity=-0.014 Sum_probs=39.0
Q ss_pred eEEEcCCCCEEEEecCC-----------CcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecC
Q 010206 404 ECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~d-----------g~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
+++..|++++++.|+.+ ..+.+||..+..... ..+...........+.|+++.++.|+.
T Consensus 460 ~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 460 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 55677899999999854 468999998754322 112222222234556799999999985
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00035 Score=59.07 Aligned_cols=184 Identities=9% Similarity=0.079 Sum_probs=108.0
Q ss_pred CceEEEEEecCCCcEEEEEecC--CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 361 (515)
.....+.|++ + .++.+.+.+ ..|+.+|+.+++...+ .... .........+++..|+...
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~----~~l~-------------~~~fgeGi~~~~~~ly~lt 81 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQR----AEVP-------------PPYFGAGIVAWRDRLIQLT 81 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEE----EECC-------------TTCCEEEEEEETTEEEEEE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEE----EeCC-------------CCcceeEEEEeCCEEEEEE
Confidence 4467899987 4 677777775 4899999999876432 1111 1122222333455666654
Q ss_pred --CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec
Q 010206 362 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 362 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
++.+.+||..+ .+.+.++...... +.++ +|++.|+.+..++.|.++|.++.+ ...+++
T Consensus 82 w~~~~v~v~D~~t-l~~~~ti~~~~~G----------------wglt--~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~ 141 (243)
T 3mbr_X 82 WRNHEGFVYDLAT-LTPRARFRYPGEG----------------WALT--SDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIK 141 (243)
T ss_dssp SSSSEEEEEETTT-TEEEEEEECSSCC----------------CEEE--ECSSCEEEECSSSEEEEECTTTCC-EEEEEE
T ss_pred eeCCEEEEEECCc-CcEEEEEeCCCCc----------------eEEe--eCCCEEEEECCCCeEEEEeCCCCe-EEEEEE
Confidence 49999999987 7788877654321 1344 566666666668899999999874 334443
Q ss_pred c--CCC---ceeeEEECCCCCeeEeecCCCeEEEec--CCCCCc-cc---cCCcc----ccccCCeeEEEEcCCCCEEEE
Q 010206 440 A--SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSA-LD---ANGNA----FDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 440 ~--~~~---~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~-~~---~~~~~----~~~~~~i~~~~~s~~~~~la~ 504 (515)
. +.. .++.+.+. +|+..+....+..|.+++ ..+... .. +.... .......+.+||+|+++.|.+
T Consensus 142 V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfV 220 (243)
T 3mbr_X 142 VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFV 220 (243)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEE
T ss_pred EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEE
Confidence 3 222 23444544 666665554455555521 111110 00 00000 012345699999999998888
Q ss_pred EcC
Q 010206 505 AAS 507 (515)
Q Consensus 505 ~~~ 507 (515)
.+.
T Consensus 221 TGK 223 (243)
T 3mbr_X 221 TGK 223 (243)
T ss_dssp EET
T ss_pred ECC
Confidence 774
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0038 Score=57.91 Aligned_cols=171 Identities=9% Similarity=0.045 Sum_probs=95.0
Q ss_pred EEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEecC
Q 010206 238 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMR 314 (515)
Q Consensus 238 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd~~ 314 (515)
..+++++.+..|..+ ..+.|.+.++...... .+ +.........+++.|.+..++.+-... +.|..+++.
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-Ee-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 456777655554444 5677888887633211 11 112234578999999763444444444 678888875
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.... ..+-. ........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 234 G~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~------ 289 (386)
T 3v65_B 234 GSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLP------ 289 (386)
T ss_dssp SCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCS------
T ss_pred CCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCC------
Confidence 4321 11110 01134688999987777777653 888888876 3332333211100
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
.-..+++. ++.++++-...+.|..++..+++.. ..+.........+++
T Consensus 290 --------~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 290 --------HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp --------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred --------CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 01267773 4556666677889999986666433 444433333334433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00037 Score=69.94 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=152.8
Q ss_pred CcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccC--CCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCC
Q 010206 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (515)
Q Consensus 126 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 203 (515)
+..+++++.++.|..+|..+++.+............ .....+. ..+++ .+..+ +.++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~v------------~v~~~ 125 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVN------RGVAL--WGDKV------------YVGTL 125 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCC------CCCEE--EBTEE------------EEECT
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCc------cceEE--ECCEE------------EEEcC
Confidence 347778888899999999999988776544221100 0000000 01111 12222 56667
Q ss_pred cccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC---CCCEEEEe-C------CCcEEEEeCCCCCcccceec
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-D------DLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~ 273 (515)
++.+..+| ..+. +....+..........+.-.| ++ .++.+ . ++.|..+|.++++...+...
T Consensus 126 dg~l~alD--~~tG------~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 126 DGRLIALD--AKTG------KAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp TSEEEEEE--TTTC------CEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEE--CCCC------CEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 78888777 2222 112111111000000011111 34 44444 2 48899999998876544321
Q ss_pred c--cCcc-------------cc--------ccCCceEEEEEecCCCcEEEEEecCC-------------------eEEEE
Q 010206 274 V--KPAN-------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLI 311 (515)
Q Consensus 274 ~--~~~~-------------~~--------~~~~~i~~i~~~p~~~~~l~~~~~dg-------------------~i~~w 311 (515)
. .+.. .. ++......+++.|+. .+++.++.++ .|..+
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 0000 00 111122357888887 6788887766 38999
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCC---EEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc-
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL- 386 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~- 386 (515)
|.++++...+.... .+.... +. ...+.....+..+|+ .++.++. |.++++|..+ ++++.........
T Consensus 276 D~~tG~~~W~~~~~--~~~~wd----~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w 347 (668)
T 1kv9_A 276 RPDTGKLAWHYQVT--PGDSWD----FT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTW 347 (668)
T ss_dssp CTTTCCEEEEEESS--TTCCSC----CC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCS
T ss_pred cCCCCceeeEeecC--CCcccc----cc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEecccccccccc
Confidence 99999865432110 000000 00 012222223334665 5667765 9999999987 7766443322100
Q ss_pred cccc-----c------ccccCCC---------ccceeeEEEcCCCCEEEEe-----------------------------
Q 010206 387 RPKL-----C------DLYENDS---------IFDKFECCLSGDGGRVATG----------------------------- 417 (515)
Q Consensus 387 ~~~~-----~------~~~~~~~---------~~~v~~~~~s~~~~~l~s~----------------------------- 417 (515)
...+ . ..|..+. ...-..++++|+..+++..
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 0000 0 0000000 0000137888887766541
Q ss_pred -------cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 418 -------SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 418 -------s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
..+|.|..||+.+++ ..-..+.+ .+.........+.+++.++.|+.++.+
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~-~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~ 484 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQK-AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAY 484 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTE-EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cCCCCCCCccceEEEEeCCCCc-EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhh
Confidence 134889999999884 33333332 223333344467788889999999983
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0047 Score=56.41 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=91.6
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEec
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 313 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd~ 313 (515)
...+++++.+..|..+ ..+.|.+.++...... .+ ....-.....++++|.+..++.+-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-EE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4567787755555444 5778999888743321 11 112234578999999763555554445 78888887
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
..... ..+- .........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 190 dG~~~-----~~~~-----------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~----- 246 (349)
T 3v64_C 190 DGSGR-----RIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLP----- 246 (349)
T ss_dssp TSCSC-----EESC-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCS-----
T ss_pred CCCCc-----EEEE-----------ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCC-----
Confidence 54321 1110 001134688999998777777653 889999886 3332332211100
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.-..+++. ++.++++-...+.|..++..+++..
T Consensus 247 ---------~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 247 ---------HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ---------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ---------CceEEEEE-CCEEEEecCCCCeEEEEEccCCCcc
Confidence 01267773 4555666667788988886666433
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00098 Score=66.94 Aligned_cols=210 Identities=9% Similarity=0.022 Sum_probs=101.8
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cC-----Ce
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GS 307 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~d-----g~ 307 (515)
...++++..++++++.| .+..+.+||+.+.+... + . .+..... -.+++..+++ ++++.|+ .+ ..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~-~---~--~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~ 315 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-G---P--DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKN 315 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-C---C--CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCC
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeE-C---C--CCCcccc-ccceEEecCC-eEEEEeCcccCCccccc
Confidence 34456777899999987 46789999988654221 1 0 1111111 1345566787 8888888 34 56
Q ss_pred EEEEecCcccccccccceeeeccCCCcc-ccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
+.+||..+.+.... ........+... .....+...+..+.. .+|+.+..+....+..||... .............
T Consensus 316 ~e~yd~~t~~W~~~--~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~ 391 (656)
T 1k3i_A 316 GEVYSPSSKTWTSL--PNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSN 391 (656)
T ss_dssp EEEEETTTTEEEEE--TTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEET
T ss_pred ceEeCCCCCcceeC--CCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCccccc
Confidence 89999977542110 000000000000 000001112222211 133333333336788899875 3322222111110
Q ss_pred cccccccccCCCccceeeEEEc-CCCCEEEEecCCC-----------cEEEEecCCCCcceee-eccCCC-ceeeEEECC
Q 010206 387 RPKLCDLYENDSIFDKFECCLS-GDGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKN-PMRRQVQTP 452 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~dg-----------~i~iw~~~~~~~~~~~-~~~~~~-~v~~~~~~~ 452 (515)
.. . ...... -.++.|. .++++++.|+.++ .|.+||..+....... -..... .-...+..|
T Consensus 392 ~~-~----~~~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~ 465 (656)
T 1k3i_A 392 RG-V----APDAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP 465 (656)
T ss_dssp TE-E----CCCCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT
T ss_pred cc-c----CCCCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC
Confidence 00 0 000000 1134444 3778888887543 6788888765433211 011112 223456678
Q ss_pred CCCeeEeecCC
Q 010206 453 SRPSRPLGSLS 463 (515)
Q Consensus 453 ~~~~l~s~~~d 463 (515)
+++.++.|+.+
T Consensus 466 ~g~i~v~GG~~ 476 (656)
T 1k3i_A 466 DGSTFITGGQR 476 (656)
T ss_dssp TSCEEEECCBS
T ss_pred CCCEEEECCcc
Confidence 99999999865
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00025 Score=69.64 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=43.1
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 442 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 442 (515)
|.|..||+.+ ++.+-........ ..-.....+.+++.|+.||.++.||.++++ ++..++...
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG~-~lW~~~~~~ 527 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSGK-ELWKFQTGS 527 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSS
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCCC-EEEEecCCC
Confidence 6788888876 5555444322111 111222346788889999999999999984 444444332
Q ss_pred Cc-eeeEEECCCCC
Q 010206 443 NP-MRRQVQTPSRP 455 (515)
Q Consensus 443 ~~-v~~~~~~~~~~ 455 (515)
.. -..+.+..+|+
T Consensus 528 g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 528 GIVSPPITWEQDGE 541 (582)
T ss_dssp CCCSCCEEEEETTE
T ss_pred CcccCceEEEECCE
Confidence 21 12344545555
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0053 Score=55.21 Aligned_cols=234 Identities=7% Similarity=-0.031 Sum_probs=126.3
Q ss_pred EEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
|+.+.. ..|+..|+.+.+...+...... +..+++.+.+..+ +++....+.|.
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~~----------------p~g~~~d~~~~~l-----------y~~D~~~~~I~ 55 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRN----------------VVALDTEVASNRI-----------YWSDLSQRMIC 55 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCSS----------------EEEEEEETTTTEE-----------EEEETTTTEEE
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCCc----------------eEEEEEEeCCCEE-----------EEEECCCCcEE
Confidence 444333 5688888887765443321111 1167777765544 13444456777
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
.++ ..... ............-..+..+++++.+..|..+ ..+.|.+.++.... ...+. .......
T Consensus 56 ~~~--~~g~~---~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P 122 (316)
T 1ijq_A 56 STQ--LDRAH---GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKP 122 (316)
T ss_dssp EEE--C-----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEE-------ECTTCCE
T ss_pred EEE--CCCCC---CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEE-------ECCCCCc
Confidence 666 22200 0001111112222456788998755555444 68899999987432 21111 1123467
Q ss_pred EEEEEecCCCcEEEEEecC-CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--C
Q 010206 287 TSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M 363 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~ 363 (515)
..++++|.+..++.+.... +.|..+++..... +.+-. ..-.....+++++++..|+.++. +
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~-----------~~~~~P~gla~d~~~~~lY~~D~~~~ 186 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLH 186 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-----EEEEE-----------CCCCCceEEEEeccCCEEEEEECCCC
Confidence 8999999763444444333 6788888753221 11110 01134688999998887777653 7
Q ss_pred eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 364 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.|..+|+. +.....+...... ...-..+++. ++.++++-...+.|..++..+++..
T Consensus 187 ~I~~~d~d--g~~~~~~~~~~~~------------~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 187 SISSIDVN--GGNRKTILEDEKR------------LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEETT--SCSCEEEEECTTT------------TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred eEEEEecC--CCceEEEeecCCc------------cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 99999986 3333333221100 0001267775 4556666677889999998776433
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0036 Score=61.42 Aligned_cols=80 Identities=10% Similarity=0.135 Sum_probs=45.8
Q ss_pred EEecCCCCEEEEe-CC----------------CcEEEEeCCCCCcccceecccC--ccccccCCceEEEEEe-cCCC--c
Q 010206 240 ISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKP--ANMEDLTEVITSAEFH-PTHC--N 297 (515)
Q Consensus 240 ~~~~~~~~~l~s~-~d----------------~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~-p~~~--~ 297 (515)
+++.++..++..+ .+ +.|..+|.++++.......... ..+.....++. +... .+|. .
T Consensus 246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 4556666677666 43 3789999998876543210000 00001112222 2222 3442 3
Q ss_pred EEEEEecCCeEEEEecCcccccc
Q 010206 298 MLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 298 ~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
.++.++.+|.+.++|.++++.+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEECCCcEEEEEECCCCCEee
Confidence 67778899999999999998654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0039 Score=53.46 Aligned_cols=213 Identities=12% Similarity=0.085 Sum_probs=118.2
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 279 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 279 ~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
+.+-...+..++++|++..++++...++.|...|.. ++...+ +.. .+ ......+++.+++.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~----i~l----------~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT----IPL----------DF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE----EEC----------SS-CSSEEEEEECSTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE----Eec----------CC-CCChHHeEEeCCCEEEE
Confidence 344456799999999874677778888999999987 554321 111 00 13467888888888777
Q ss_pred EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC--CCcce
Q 010206 359 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAES 435 (515)
Q Consensus 359 s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~--~~~~~ 435 (515)
+... +.+.++++..... +.......-. +.....+. +...++|+|+++.|+++.......+|.+.. .....
T Consensus 86 s~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp EETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred EECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 7544 8999999975332 2222211100 00011111 234899999998777776655555555531 00111
Q ss_pred eee-------ccCCCceeeEEECCCCC-eeEeecCCCeEEE--ecCCCCCccccCCcccc---ccCCeeEEEEcCCCCEE
Q 010206 436 TTL-------EASKNPMRRQVQTPSRP-SRPLGSLSGVVRR--VKGADNSALDANGNAFD---FSMKLLHLAWHPSENSI 502 (515)
Q Consensus 436 ~~~-------~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~l--~~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l 502 (515)
..+ ..+.....++++.|... +++....+..+-. .++.-.....+.....+ --..-..++|.++|+..
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 111 11234567888888654 4444444444444 22221111111111100 01356899999999976
Q ss_pred EEEcCCcEEEEe
Q 010206 503 ACAASNSLYMYY 514 (515)
Q Consensus 503 a~~~~~~~~i~~ 514 (515)
+++-.|-++.|.
T Consensus 239 IvsE~n~~y~f~ 250 (255)
T 3qqz_A 239 IVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTEEEEEE
T ss_pred EEcCCceEEEEE
Confidence 676666666664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00024 Score=72.51 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=104.9
Q ss_pred CeEEEEec-CCCCEEEEe-C-CC----cEEEEeCCCC-CcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--
Q 010206 236 HINSISNN-SDGETFISA-D-DL----RINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 305 (515)
Q Consensus 236 ~v~~~~~~-~~~~~l~s~-~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-- 305 (515)
.+...+|| |||++|+.+ + +| +|+++|+.++ +.... .+. ....+++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~---~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS---GTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE---EECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc---CceeeEEEecCC-CEEEEEEECCC
Confidence 67789999 999999865 2 33 4999999877 42211 111 113467899998 666666654
Q ss_pred ---CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc---C-CeEEEEEeeCCCCCe-
Q 010206 306 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y-MTLKLWDINMDSGPV- 377 (515)
Q Consensus 306 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~-~~i~iwd~~~~~~~~- 377 (515)
..|.++++.++.... ...++.. .......+.|||||++|+... . ..|.++|+..+....
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCCEEEEEECCCCchhc--EEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 257777776653211 1122211 112356789999999988632 2 678888887521122
Q ss_pred -eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----CcEEEEecCCCCcceee-eccCCC--ceeeEE
Q 010206 378 -ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSAESTT-LEASKN--PMRRQV 449 (515)
Q Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----g~i~iw~~~~~~~~~~~-~~~~~~--~v~~~~ 449 (515)
..+...... ..+++.|+.++.+++....+ ..|..+++.+.+.. .. +-.+.. .+..+.
T Consensus 311 ~~~l~~~~~~--------------~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~ 375 (751)
T 2xe4_A 311 LEIVRPREKG--------------VRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIA 375 (751)
T ss_dssp EEESSCCCTT--------------CCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEE
T ss_pred eEEeecCCCC--------------ceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEE
Confidence 222211100 01244444333344444333 35666777642121 22 222322 334455
Q ss_pred ECCCCCeeEeecCCCeEEE
Q 010206 450 QTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 450 ~~~~~~~l~s~~~d~~v~l 468 (515)
+. .+.++++...++..++
T Consensus 376 ~~-~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EC-SSEEEEEEEETTEEEE
T ss_pred EE-CCEEEEEEEeCCEEEE
Confidence 54 3445677777887666
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0064 Score=61.99 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=41.7
Q ss_pred CeEEEEecCCCCEEEEe----CCCcEEEEeCCCCCccc--ceecccCccccccCCceEEEEEecCCCcEEEEEecC--C-
Q 010206 236 HINSISNNSDGETFISA----DDLRINLWNLEISNQSF--NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--G- 306 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g- 306 (515)
....+.|+||+++|+.. ....|.++|+.++.... .. ..........++.|+..+ .+++....+ +
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~ 344 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VRPREKGVRYDVQMHGTS-HLVILTNEGGAVN 344 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SSCCCTTCCEEEEEETTT-EEEEEECTTTCTT
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------eecCCCCceEEEeeeeCC-EEEEEeCCCCCCC
Confidence 34578899999988764 24568888987653211 11 112234455666665544 555555444 2
Q ss_pred -eEEEEecCc
Q 010206 307 -SIRLIDMRQ 315 (515)
Q Consensus 307 -~i~~wd~~~ 315 (515)
.|..+|+.+
T Consensus 345 ~~L~~~d~~~ 354 (751)
T 2xe4_A 345 HKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTS
T ss_pred cEEEEEcCCC
Confidence 566666653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.96 E-value=0.012 Score=54.78 Aligned_cols=247 Identities=8% Similarity=0.001 Sum_probs=131.9
Q ss_pred EEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccE
Q 010206 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (515)
Q Consensus 128 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i 207 (515)
+|+.+ ....|+..++.......+.... ..+. .++|.+.+..| +++-...+.|
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~---------~~~~-------~l~~d~~~~~l-----------ywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNL---------RNVV-------ALDTEVASNRI-----------YWSDLSQRMI 136 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSC---------SCEE-------EEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEEe-ccceeEEEccCCcceeEecccc---------Ccce-------EEeeeeccCce-----------EEEecCCCeE
Confidence 44443 4467888888876544433211 1111 67777655544 1333344566
Q ss_pred EeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCc
Q 010206 208 RLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 285 (515)
Q Consensus 208 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
..++ +..... .................+++.+.+..|..+ ..+.|.+.+++..... .+ +......
T Consensus 137 ~~~~--~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~-~l-------~~~~~~~ 203 (400)
T 3p5b_L 137 CSTQ--LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TL-------FRENGSK 203 (400)
T ss_dssp EEEE--C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEE-EE-------EECSSCC
T ss_pred EEEE--cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceE-EE-------EeCCCCC
Confidence 6555 222110 001111122234567889998855555544 5788999988744321 11 1122345
Q ss_pred eEEEEEecCCCcEEEEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 286 ITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 286 i~~i~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
...|++.|.+ ..|+.... .+.|...++..... ..+- ...-.....|++++++..|+.++.
T Consensus 204 P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~-----~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 204 PRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp EEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred cceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc-----EEEE-----------ECCCCceEEEEEEeCCCEEEEEECC
Confidence 7899999976 44444442 36788888754321 1110 011135688999998888877653
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccC
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+.|..+|+. +.....+...... +..-..+++. .+.++++-...+.|..++..+++.. ..+...
T Consensus 267 ~~~I~~~d~d--G~~~~~~~~~~~~------------l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~ 330 (400)
T 3p5b_L 267 LHSISSIDVN--GGNRKTILEDEKR------------LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAEN 330 (400)
T ss_dssp TTEEEEEETT--SCCCEEEEECSST------------TSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECS
T ss_pred CCEEEEEeCC--CCccEEEEeCCCC------------CCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecC
Confidence 789988886 3333333321110 0001256663 3445556667788999997777444 444433
Q ss_pred CCceeeE
Q 010206 442 KNPMRRQ 448 (515)
Q Consensus 442 ~~~v~~~ 448 (515)
......+
T Consensus 331 ~~~p~~i 337 (400)
T 3p5b_L 331 LLSPEDM 337 (400)
T ss_dssp CSCEEEE
T ss_pred CCCCceE
Confidence 3333344
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0054 Score=57.82 Aligned_cols=268 Identities=9% Similarity=0.020 Sum_probs=134.7
Q ss_pred eeEEEEEeec-CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
....|+|.|. .++ .|+.+...+.|+.++..++.......... .+..++++++|+.+
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~~----------------~P~giavd~dG~ly------ 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNIG----------------QCADVNFTLNGDMV------ 196 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCCS----------------CEEEEEECTTCCEE------
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCCC----------------CccEEEECCCCCEE------
Confidence 3568888542 234 45555444889999998887665543111 11278899999833
Q ss_pred CCCCCCCCCCCc--ccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 193 ASNDSSFPPGGV--SSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 193 ~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++.... ..-.++. +.. ....... .. + ..-.....++++| ++.++++- .++.|+.+|..++...
T Consensus 197 ------Vad~~~~~~~~gv~~--~~~-~~~~~~~--~~-~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~ 263 (433)
T 4hw6_A 197 ------VVDDQSSDTNTGIYL--FTR-ASGFTER--LS-L-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT 263 (433)
T ss_dssp ------EEECCSCTTSEEEEE--ECG-GGTTCCE--EE-E-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred ------EEcCCCCcccceEEE--EEC-CCCeecc--cc-c-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence 211100 0111111 111 1111000 01 1 1224456788999 67666665 6888999998755431
Q ss_pred cceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCc--ccccccccceeeec-cCCCccc--cccccc
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEII 342 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ 342 (515)
..+... +.......++|+|++ + ++++-...+.|+.+++.. +... ....+.+. ....... .....-
T Consensus 264 ~~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~ 334 (433)
T 4hw6_A 264 EEEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARL 334 (433)
T ss_dssp EEEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBC
T ss_pred EEEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEE
Confidence 121110 112223579999999 6 555555678999988653 2211 01111111 0000000 000011
Q ss_pred cceeEEEE---------ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc--ccccccc-cccCCCccceeeEEEc-
Q 010206 343 ASISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS- 408 (515)
Q Consensus 343 ~~i~~~~~---------s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s- 408 (515)
.....+++ .++|.+.++-.. +.|+.++.. + .+.++.+... ......- ......+..-..++++
T Consensus 335 ~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~ 411 (433)
T 4hw6_A 335 WGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM 411 (433)
T ss_dssp SSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred cCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence 24567888 666766665444 788888742 3 3444443321 0000000 0001112223479999
Q ss_pred CCCCEEEEecCCCcEEEEecC
Q 010206 409 GDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~ 429 (515)
++|.++++-...++|+.++++
T Consensus 412 ~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 412 KRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEecC
Confidence 677777766677888888764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.013 Score=55.60 Aligned_cols=217 Identities=14% Similarity=0.037 Sum_probs=110.8
Q ss_pred CCeEEEEe-------cCCCCEEEEe-C-CC------cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE
Q 010206 235 YHINSISN-------NSDGETFISA-D-DL------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 299 (515)
Q Consensus 235 ~~v~~~~~-------~~~~~~l~s~-~-d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l 299 (515)
.....++| +++++.|+.+ . ++ .|.+++...........+. ..+... .....++++|++..++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~~-~~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAAY-KQCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEEE-SCCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeeccC-CCceEEEEcCCCCeEE
Confidence 35778889 9999866665 3 32 2666664331111100000 011111 2345778899653677
Q ss_pred EEEecCCeEEEEecC-------cccccccc-------c-ceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-
Q 010206 300 AYSSSKGSIRLIDMR-------QSALCDTH-------S-KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y- 362 (515)
Q Consensus 300 ~~~~~dg~i~~wd~~-------~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~- 362 (515)
++-..++.|..+|+. ++..-... . ..+.. +.......++|+|+|++|+.++ .
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-----------~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-----------ADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-----------SSSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEec-----------CCCCCceEEEEcCCCCEEEEEeCCC
Confidence 777778899999987 44320000 0 00111 0113457899999999766654 3
Q ss_pred CeEEEEEeeCCCCCe---eeEeeeccccccccccccCCCcccee-eEEEc-------CCCCEEEEecCCCcEEEEecCCC
Q 010206 363 MTLKLWDINMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..|+.++.......+ .++.+.........-......+..-. .++.. ++|.++++=....+|+.++. ++
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 889988876322221 33433311100000000001111112 24444 46677777777889999984 34
Q ss_pred CcceeeeccC------------------------CCceeeEEECCC-CCeeEeecCCCeEEE
Q 010206 432 SAESTTLEAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR 468 (515)
Q Consensus 432 ~~~~~~~~~~------------------------~~~v~~~~~~~~-~~~l~s~~~d~~v~l 468 (515)
.. .++-+. ......+++.++ +.++++-.....||.
T Consensus 411 -~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 411 -IV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp -BE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred -CE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 22 233221 123556777775 655555555566665
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.011 Score=57.99 Aligned_cols=29 Identities=3% Similarity=-0.147 Sum_probs=22.6
Q ss_pred cEEEeeeC-CCeEEEEEc-cCCeeEEEeecc
Q 010206 127 ALYLLSTN-DKTIKLWKV-QEKKVKKVFDWN 155 (515)
Q Consensus 127 ~~l~~~~~-d~~i~iwd~-~~~~~~~~~~~~ 155 (515)
..+++++. ++.|.-+|. .+++.+......
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~ 93 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPK 93 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCC
Confidence 36777776 889999999 899988776554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0065 Score=59.57 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=29.4
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
+|.|..||+.+++ .+-..+.. .++........+..+..++.|+.++.++
T Consensus 443 ~g~l~a~D~~tG~-~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 443 MGQIRAFDLTTGK-AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CEEEEEECTTTCC-EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEEEEECCCCC-EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 5789999999884 33333322 2222222233455677788999998833
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0065 Score=57.25 Aligned_cols=265 Identities=9% Similarity=0.042 Sum_probs=131.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccC
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~ 193 (515)
....|++.|. ++..|+++...+.|+.+|+..+.+..+..... .+..++++++|+.|
T Consensus 138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~----------------~P~~ia~d~~G~~l------- 193 (430)
T 3tc9_A 138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLS----------------KVRTICWTHEADSM------- 193 (430)
T ss_dssp CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCCS----------------CEEEEEECTTSSEE-------
T ss_pred CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCCC----------------CcceEEEeCCCCEE-------
Confidence 4577888541 23356666555889999998877655433111 11278899999855
Q ss_pred CCCCCCCCCC-cc----cEEeeeeeecccccccccceeeeeeccCcCCeEEEEecC-CCCEEEEe-CCCcEEEEeCCCCC
Q 010206 194 SNDSSFPPGG-VS----SLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 194 ~~~~~~~~~~-~~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
+.+.. .+ .+...+ .+...... ... . .......++++| ++.++++- .++.|..++.....
T Consensus 194 -----yvad~~~~~~~~~v~~~~-----~~g~~~~~--~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 194 -----IITNDQNNNDRPNNYILT-----RESGFKVI--TEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp -----EEEECCSCTTSEEEEEEE-----GGGTSCSE--EEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred -----EEEeCCCCcccceEEEEe-----CCCceeee--eee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 22221 11 122121 11111100 111 1 123456788999 67766665 68899999987543
Q ss_pred cccceecccCccccccCCceEEEEEecCCCc-EEEEEecCCeEEEEecCcc--cccccccceeeec-cCCCccc--ccc-
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQS--ALCDTHSKLFEEQ-EAPGTRS--FFT- 339 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~-~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~-~~~~~~~--~~~- 339 (515)
.. .+. ... .......++|+|++ + ++++-...+.|..++.... ... ....+... ....... ...
T Consensus 260 ~~-~~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a 329 (430)
T 3tc9_A 260 TT-PLF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDWKTKRLT--TPYIVCGQQGAKDWVDGVGKKA 329 (430)
T ss_dssp EE-EEE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEECTTCBCCBCEEGGGC
T ss_pred EE-EEE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCccccccc--ceEEEeccCCCCCCCCCCCcce
Confidence 21 111 111 12446899999999 6 5555566889999886532 110 01112111 0000000 000
Q ss_pred ccccceeEEEEc--------cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecc--ccccccc-cccCCCccceeeEEE
Q 010206 340 EIIASISDIKFA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCL 407 (515)
Q Consensus 340 ~~~~~i~~~~~s--------~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~ 407 (515)
....+-..+... ++|.+.++-.. +.|+.++.. + .+.++.+... ......- ......+..-..+++
T Consensus 330 ~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~--G-~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giav 406 (430)
T 3tc9_A 330 RMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ--G-RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVY 406 (430)
T ss_dssp BBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT--S-EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEE
T ss_pred EeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC--C-cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEE
Confidence 011122245553 33544444333 788888732 3 3444443310 0000000 000011222348999
Q ss_pred cCC-CCEEEEecCCCcEEEEecC
Q 010206 408 SGD-GGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 408 s~~-~~~l~s~s~dg~i~iw~~~ 429 (515)
+|+ +.++++-...+.|+.++++
T Consensus 407 d~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 407 DEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp ETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECCCCEEEEEECCCCeEEEEccC
Confidence 994 6666666677788888764
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.87 E-value=0.044 Score=58.30 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.4
Q ss_pred ccceEEEEECCC------CCeEEeecC-CCeEEEEEcccC
Q 010206 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT 67 (515)
Q Consensus 35 ~~~v~~v~~s~~------g~~lasg~~-dg~v~vw~~~~~ 67 (515)
.+.|+|+++.|. ++++|+|.. |++|+|+++.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 467999999873 369999996 999999998753
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0084 Score=54.28 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=110.7
Q ss_pred CeEEEEecCCCCEEEEe-------------CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec--CCC-cEE
Q 010206 236 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 299 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p--~~~-~~l 299 (515)
..-++...|+|..++++ .+|.|.++|+++.......+.+....+.........+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566777887777765 58999999997543222211111000122345678888866 342 244
Q ss_pred EEEec--CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---------------
Q 010206 300 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--------------- 362 (515)
Q Consensus 300 ~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--------------- 362 (515)
++-.. +..|.+|++............++... -...+.+.+.++|++.++...
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44444 56788888765432222233333221 135789999999998877531
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcce--eee
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAES--TTL 438 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~--~~~ 438 (515)
..=.+|.+.. ++ +..+...-.. -..++||||++.|+.+ +..+.|+.|++...+.+. ..+
T Consensus 200 ~~~g~vyr~d~-~~-~~~~~~~l~~---------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 200 LAWSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CCCEEEEEECT-TC-CEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEEEC-Ce-EEEeecCCcc---------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 1234454442 32 2222111111 2379999999877655 467899999987433322 233
Q ss_pred ccCCCceeeEEECC-CCCeeEeecCC
Q 010206 439 EASKNPMRRQVQTP-SRPSRPLGSLS 463 (515)
Q Consensus 439 ~~~~~~v~~~~~~~-~~~~l~s~~~d 463 (515)
. .....-.+++.+ +|.+.+++..+
T Consensus 263 ~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 263 S-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred e-CCCCCceEEEeCCCCcEEEEecCC
Confidence 2 234455778888 48776655433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.016 Score=53.66 Aligned_cols=192 Identities=10% Similarity=-0.025 Sum_probs=112.2
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++.+..|..+ ..+.|..+++...... .+. .........+++.+.+..++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 457789999766665554 6889999998754321 111 111234567889986535666666678888888
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+..... ..+. .........++++|.+..|+..+. +.|..+++. +.....+.....
T Consensus 188 ~dg~~~-----~~l~-----------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~---- 245 (386)
T 3v65_B 188 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHL---- 245 (386)
T ss_dssp TTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSC----
T ss_pred CCCCce-----EEee-----------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCC----
Confidence 754321 1111 011134688999997777666543 567776665 443333322111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
..-..++++|++..|+ +-+..+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus 246 ----------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 246 ----------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp ----------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ----------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 0123799998766655 4456778999998743 332333333444557777 44455566555666655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.019 Score=58.31 Aligned_cols=162 Identities=10% Similarity=0.016 Sum_probs=95.3
Q ss_pred CcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-C-CeE
Q 010206 233 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-K-GSI 308 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-d-g~i 308 (515)
.......|++.+.++.|..+ ..+.|.+.++..... ..++ .........|++.|.+ ..|+.... . +.|
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~-------~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLF-------RENGSKPRAIVVDPVH-GFMYWTDWGTPAKI 539 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEE-------ECTTCCEEEEEEETTT-TEEEEEECSSSCEE
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEE-------eCCCCCcceEEEecCC-CCEEEecCCCCCeE
Confidence 34556789999877666655 588999999874332 1111 1223457899999986 34444443 3 678
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
...++..... ..+- .........|++++.+..|+.++. +.|...++. +.....+......
T Consensus 540 ~~~~~dG~~~-----~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~ 601 (791)
T 3m0c_C 540 KKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKR 601 (791)
T ss_dssp EEEETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTT
T ss_pred EEEecCCCce-----EEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCc
Confidence 8888754321 1111 111135788999987777777653 788888876 4444444321110
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+..-+.+++.. +.++++-...+.|...+..+++.+
T Consensus 602 ------------l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 602 ------------LAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp ------------TSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred ------------cCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 00012566542 344445556788888887776443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.028 Score=51.21 Aligned_cols=192 Identities=10% Similarity=-0.038 Sum_probs=112.1
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|++....|..+ ..+.|..+++...... .+. .........+++.+.+.+++++-...+.|.+.+
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 346789999766666655 5888999998754322 111 111234578999986535666666678999999
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
+..... ..+. .........++++|.+..|+..+ . +.|..+++. +.....+....
T Consensus 145 ~dG~~~-----~~l~-----------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~----- 201 (349)
T 3v64_C 145 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTH----- 201 (349)
T ss_dssp TTSCSC-----EEEE-----------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSS-----
T ss_pred CCCCce-----EEEE-----------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECC-----
Confidence 864321 1111 01113468899999766666544 2 567777665 33333322111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..-..++++|++..|+.+ +..+.|..+++... .....+.........+++ ..+..+.+-...+.|..
T Consensus 202 ---------~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 270 (349)
T 3v64_C 202 ---------LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 270 (349)
T ss_dssp ---------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred ---------CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEE
Confidence 1112379999877666544 56678999998743 332333333444556777 34455555555566555
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.027 Score=51.38 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=62.6
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEecC-----C
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~d-----g 306 (515)
.....++|.|+++++++-.++.|.+++ . ++ ...+.++. ...........++++|+ +..++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 456799999999977776669999998 2 32 11111111 11122456899999998 42455544433 5
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.|..|+...+.. ......+..-... .-..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~-~~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERG-VLDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCE-EEEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCc-CceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEE
Confidence 677787764321 1101111110000 00112 2368999999987776
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.032 Score=50.33 Aligned_cols=231 Identities=11% Similarity=0.087 Sum_probs=117.8
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..+.++.+++ +..++++..+.|.. ...+....+... ....+...+..+.+.+++ ..++.+ .++.| |...
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~----~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIP----LDPKLPGSPRLIKALGNG-SAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECC----CCTTCSSCEEEEEEEETT-EEEEEE-TTCCE--EEES
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECc----cccCCCCCeEEEEEECCC-CEEEEe-CCccE--EEEc
Confidence 3466777765 45555566664433 222222222110 001123457788887776 566655 45543 2222
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEE-EEeeCCCCCeeeEeeecccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.+- ..+.... ..+...+..+.+.+++++++.+..+.+.. +|- .+..-..+.....
T Consensus 149 DgG------~tW~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~~~~-------- 204 (327)
T 2xbg_A 149 DSG------KNWQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNRTTS-------- 204 (327)
T ss_dssp STT------SSEEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEECCSS--------
T ss_pred CCC------CCCEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCCCCC--------
Confidence 211 1121111 11224688899999999988887654433 332 1222222211110
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec----cCCCceeeEEECCCCCeeEeecCCCeEEE-
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----ASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 468 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l- 468 (515)
..+..+.+++++++++. +.+|.+++.+...+ ..-..+. .+...+..+++.+++..++.+. ++.+..
T Consensus 205 ------~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S 275 (327)
T 2xbg_A 205 ------RRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCS 275 (327)
T ss_dssp ------SCEEEEEECTTSCEEEE-ETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEE
T ss_pred ------CccceeEECCCCCEEEE-eCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEe
Confidence 11347888999886654 45677777642212 1111111 1223477888888887777765 666655
Q ss_pred ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEE
Q 010206 469 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 511 (515)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~ 511 (515)
.++.+.+.... ........+.++.|.+++..++++.+..++
T Consensus 276 ~DgG~tW~~~~--~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~ 316 (327)
T 2xbg_A 276 QDGGQTWQQDV--DVKKVPSNFYKILFFSPDQGFILGQKGILL 316 (327)
T ss_dssp SSTTSSCEECG--GGTTSSSCCCEEEEEETTEEEEECSTTEEE
T ss_pred CCCCcccEEcC--ccCCCCCCeEEEEEECCCceEEEcCCceEE
Confidence 55555552111 011123567899998766666665544333
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00087 Score=67.44 Aligned_cols=175 Identities=12% Similarity=0.019 Sum_probs=92.6
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEe
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID 312 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd 312 (515)
....|++.+.+..|..+ ..+.|.++++...... .++ .........|++.|.+..++++-... +.|..++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 35578888654444444 5788999998743321 111 11123457888998763444433222 6777776
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
+..... +.+. .........|+|+|++..|+.++ . +.|..+++. +.....+......
T Consensus 526 ~dG~~~-----~~l~-----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~---- 583 (699)
T 1n7d_A 526 LNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKR---- 583 (699)
T ss_dssp SSSCCC-----CEES-----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSS----
T ss_pred CCCCCe-----eEEE-----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCc----
Confidence 643211 1110 00012457899999877666654 3 789999886 3322333211100
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
+..-..+++..+ .++++....+.|..++..+++ ....+.........+++
T Consensus 584 --------~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~-~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 584 --------LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS-DVNLLAENLLSPEDMVL 633 (699)
T ss_dssp --------CSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE-EEECCCTTCSSCCCCCB
T ss_pred --------CCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC-ceEEeecCCCCCcEEEE
Confidence 000125666544 455566677899999987663 33444333223334443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.06 Score=52.83 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=42.0
Q ss_pred CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEec---CCCCCccccCCccccccCCeeEEEEc
Q 010206 420 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 420 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~---~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+|.|.-||+.+++.+ -..+... +...-.....+..++.++.|+.++.++ |..++...... ...-.-+.|.
T Consensus 465 ~G~l~A~D~~tG~~~-W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-----g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV-WEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-----GIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCCEE-EEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCEEEE
T ss_pred cceEEEEECCCCCEE-EEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-----CcccCceEEE
Confidence 688999999988433 3333222 222211222456777799999999833 33344222211 1111236677
Q ss_pred CCCC-EEEEE
Q 010206 497 PSEN-SIACA 505 (515)
Q Consensus 497 ~~~~-~la~~ 505 (515)
.+|+ |+++.
T Consensus 538 ~~G~qYv~~~ 547 (582)
T 1flg_A 538 QDGEQYLGVT 547 (582)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 8887 44443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.048 Score=48.87 Aligned_cols=183 Identities=7% Similarity=-0.071 Sum_probs=103.0
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+|+.+....|+..|+...+... + ......+..++|++.+..++.+-..++.|..+++............+.
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~-~--------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTS-L--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEE-E--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred EEEEECCCeEEEEECCCcceEe-h--------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence 4556655678999988654321 1 112345789999987635555555678999999875210000000111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
........+++++.+..|+..+ . +.|.++++. +.....+...... ....+
T Consensus 74 ------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~--------------~P~~i 125 (316)
T 1ijq_A 74 ------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 125 (316)
T ss_dssp ------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred ------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEECCCC--------------CcceE
Confidence 0012357889987666565543 3 899999886 4433333221100 12378
Q ss_pred EEcCCCCEEEEecC-C-CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee-EeecCCCeEEE
Q 010206 406 CLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 468 (515)
Q Consensus 406 ~~s~~~~~l~s~s~-d-g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~l 468 (515)
+++|.+..|+.... . +.|...++... .............+.+++++++..| .+-+..+.|..
T Consensus 126 avdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 126 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 99997666554443 3 68888887632 2222222334567799999876655 44445567766
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.076 Score=53.96 Aligned_cols=183 Identities=7% Similarity=-0.086 Sum_probs=104.9
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+|+.+....|+..++...... .+......+..++|++.+..++++-...+.|+.+++............+
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~---------~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi- 466 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYT---------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI- 466 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCE---------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-
T ss_pred ccccccccceeEeeccCCcce---------eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-
Confidence 455555566887777644321 1122345678999998653555565667889888886532100001111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
.........|++.+.++.|+..+ . +.|.+.++. +....++...... ....+
T Consensus 467 -----------~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI 519 (791)
T 3m0c_C 467 -----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 519 (791)
T ss_dssp -----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred -----------ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence 11113467899998887777654 3 899999886 4444444322111 12389
Q ss_pred EEcCCCCEEEEec-C-CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE
Q 010206 406 CLSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 468 (515)
Q Consensus 406 ~~s~~~~~l~s~s-~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l 468 (515)
+++|.+.+|+... . .+.|...++... .....+.......+.|++.+.+..|..+ .....|..
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 9999866666544 2 368888888743 3323333444667889999766555444 44556665
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.053 Score=48.03 Aligned_cols=217 Identities=9% Similarity=0.028 Sum_probs=116.9
Q ss_pred cCCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccceecccCcccc--cc-CCceEEEEE---ecCCCcEEEEEec-
Q 010206 234 DYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANME--DL-TEVITSAEF---HPTHCNMLAYSSS- 304 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~-~~~i~~i~~---~p~~~~~l~~~~~- 304 (515)
.....++.|++....|. +. ..++|..||...+... .+ .+. .+. +. ...+..+.| .|++ +++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 34455788987545554 45 6999999998744321 11 110 100 11 123579999 6887 77776442
Q ss_pred ------------CCeEEEEecC---cccccccccceeeeccCCCccccccc-cccceeEEEEccCCCEEEEEcCCeEEEE
Q 010206 305 ------------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDYMTLKLW 368 (515)
Q Consensus 305 ------------dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~~~i~iw 368 (515)
+..+..||+. +++.... .+............+ -......++..++|+..++++.+.=.||
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~----~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWS----VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE----EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEE----ecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 6789999998 6654321 110000000000000 0134789999999998888664212355
Q ss_pred EeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec--cC---CC
Q 010206 369 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KN 443 (515)
Q Consensus 369 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~---~~ 443 (515)
.+...++.+..+....... ......+.++++|+|+.|++...+|.|..+|+.........+. +. ..
T Consensus 163 rV~pdG~~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~ 233 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLS 233 (334)
T ss_dssp EECTTSCCEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCT
T ss_pred EEeCCCCEEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCccccc
Confidence 5554455444443221110 0111234899999999888776699999999984321001121 21 12
Q ss_pred ceeeE-EECCCCCe-eEeecCCCeEEE
Q 010206 444 PMRRQ-VQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 444 ~v~~~-~~~~~~~~-l~s~~~d~~v~l 468 (515)
....+ ....+|+. |++.+..+.+.+
T Consensus 234 ~~dgilp~~~~G~vllV~~~~~~~~~l 260 (334)
T 2p9w_A 234 GTEKIVTVPVGNESVLVGARAPYAISF 260 (334)
T ss_dssp TEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CcccccccccCCEEEEEEcCCCCEEEE
Confidence 22332 33356777 555555666555
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.11 Score=51.29 Aligned_cols=370 Identities=12% Similarity=0.005 Sum_probs=178.5
Q ss_pred ccceEEEEECCCCCeEEeec-CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccc
Q 010206 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (515)
......++|++.+..|..+. ..+.|..+++.+.... ...+...- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 44577899998666665554 4677888887643210 00111111 3
Q ss_pred eeEEEEEeecC-CCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 114 KINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 114 ~v~~l~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
....|++ +. .+.++++-...+.|.+.++.......+..... ..+..+++.|.+..|
T Consensus 85 ~P~GlAv--D~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l------ 141 (619)
T 3s94_A 85 SPDGLAC--DWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM------ 141 (619)
T ss_dssp CEEEEEE--ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE------
T ss_pred CcCeEEE--EecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE------
Confidence 4677888 43 33344444667899999998765433332111 012277888765544
Q ss_pred CCCCCCCCCC--CcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcc
Q 010206 193 ASNDSSFPPG--GVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 268 (515)
Q Consensus 193 ~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 268 (515)
+.+. ..+.|...+ .++ ..........-...+.|++++++..|..+ ..+.|...|+......
T Consensus 142 ------y~tD~g~~~~I~r~~-----~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 142 ------YWTDWGEVPKIERAG-----MDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp ------EEEECSSSCEEEEEE-----TTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred ------EEeccCCCCEEEEEE-----CCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence 2221 123333222 121 11111122234567899999987777776 5788888888743221
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccc---------cceeeeccCCCcccccc
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------SKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 339 (515)
.+. .+.......+++..+ .++.+-...+.|...|..+++..... +..+.....+.......
T Consensus 207 -~~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~ 276 (619)
T 3s94_A 207 -AVV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG 276 (619)
T ss_dssp -----------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTT
T ss_pred -EEE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCcccccc
Confidence 111 111122346666544 45555556788999998776532111 11111111110000000
Q ss_pred ccccceeEEE-----------EccCC---------------CEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 340 EIIASISDIK-----------FARNG---------------RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 340 ~~~~~i~~~~-----------~s~~~---------------~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
...+....++ ..|.| .+|+.+..+.|+..++.........+..
T Consensus 277 ~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~----------- 345 (619)
T 3s94_A 277 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL----------- 345 (619)
T ss_dssp TTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCC-----------
T ss_pred CCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEec-----------
Confidence 0000111111 11221 1333333345555555431111111100
Q ss_pred ccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-CCeeEeecCCCeEEEe--
Q 010206 394 YENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRRV-- 469 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~l~-- 469 (515)
..+.....++|++.+..|+ +-...+.|+.+++... .....+.........+++.+. +..+.+-+..+.|.+.
T Consensus 346 ---~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~-~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~ 421 (619)
T 3s94_A 346 ---EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS-GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421 (619)
T ss_dssp ---SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ---cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC-ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeC
Confidence 1112245789998655555 4456788999998754 222333333455668888864 4455666667778772
Q ss_pred cCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 470 KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
+|.... .+.. .--....+++++|...+|..+.
T Consensus 422 ~G~~~~--~l~~---~~l~~P~~iavdp~~G~ly~tD 453 (619)
T 3s94_A 422 NGTMRK--ILIS---EDLEEPRAIVLDPMVGYMYWTD 453 (619)
T ss_dssp TSCSCE--EEEC---TTCCSEEEEEEETTTTEEEEEE
T ss_pred CCCeEE--EEEE---CCCCCeeeEEEEcCCCcEEEec
Confidence 222111 1111 1124568999999755555443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.083 Score=48.13 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec---C---
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 305 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~---d--- 305 (515)
.....++|.|+++++++-.++.|+++|.. ++ ..+..+. ...........|+++|+ +..++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45789999999987777666999998743 32 1111111 11122356889999997 4245454432 3
Q ss_pred -CeEEEEecCcccc-cccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 306 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 306 -g~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
..|..|+...... .......+..-.. -..| ....++|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence 5677777654310 0000011111000 0112 2467999999987777
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.017 Score=54.42 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=88.3
Q ss_pred ceEEEEEec-CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-
Q 010206 285 VITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 362 (515)
Q Consensus 285 ~i~~i~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~- 362 (515)
....++++| ++ ..|+.....+.|+.+|+..+... .+.. .......++|+++|++|+.++.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~-----~~~~------------~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS-----TVYS------------GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE-----EEEC------------CCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE-----EEec------------CCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 34 45555555588999998775431 1111 1135788999999996666542
Q ss_pred -C----eEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceeeEEEcC-CCCEEEEecCCCcEEEEecCCCCcc
Q 010206 363 -M----TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 363 -~----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+ .+.+++.. +... ..+..... ...++++| +|.++++-..++.|+.++...+...
T Consensus 200 ~~~~~~~v~~~~~~--g~~~~~~~l~~~~~----------------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE--SGFKVITELTKGQN----------------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG--GTSCSEEEEEECSS----------------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC--CceeeeeeeccCCC----------------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 2 23333332 3222 22221111 12789999 7777777777889999998865221
Q ss_pred eeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 435 STTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
.............++++|++++ +++-.....|..
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 1111112234668999999994 455555666666
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.1 Score=48.98 Aligned_cols=128 Identities=5% Similarity=-0.019 Sum_probs=67.7
Q ss_pred eEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccc----ceecc-cCccc------cccCCceEEEEE---------ecC
Q 010206 237 INSISNNSDGETFISA--DDLRINLWNLEISNQSF----NIVDV-KPANM------EDLTEVITSAEF---------HPT 294 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~----~~~~~-~~~~~------~~~~~~i~~i~~---------~p~ 294 (515)
-..++|+|+++.|..+ ..+.|+.+++......+ .+... ....+ ...-.....+++ .++
T Consensus 275 ~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 275 NFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 3579999999966655 57899998875321111 11100 00000 011234678999 666
Q ss_pred CCcEEEEEecCCeEEEEecCcccccccccceeeeccC---CCcc---ccccccccceeEEEEc-cCCCEEEEEcC-CeEE
Q 010206 295 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRDY-MTLK 366 (515)
Q Consensus 295 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~i~~~~~s-~~~~~l~s~~~-~~i~ 366 (515)
+ .++++-...+.|+.++. ++.. ..+-+... .... ......-.....|+++ ++|.++++-.. ++|+
T Consensus 355 g-~lyvaD~~n~~I~~~~~-~G~v-----~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr 427 (433)
T 4hw6_A 355 Y-DFYFCDRDSHTVRVLTP-EGRV-----TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVR 427 (433)
T ss_dssp E-EEEEEETTTTEEEEECT-TSEE-----EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEE
T ss_pred C-cEEEEECCCCEEEEECC-CCCE-----EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEE
Confidence 6 67776667789999985 4432 11211100 0000 0000011346789999 56655555334 7888
Q ss_pred EEEee
Q 010206 367 LWDIN 371 (515)
Q Consensus 367 iwd~~ 371 (515)
.++++
T Consensus 428 ~i~~e 432 (433)
T 4hw6_A 428 KIAPE 432 (433)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 88764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.037 Score=48.98 Aligned_cols=174 Identities=9% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE---ccCCCEEEE
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHILS 359 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~s 359 (515)
.....+++|++..+.++++.-..+.|..||...+.... . .+.....+. .....+..+.| .|+++++++
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEEE
Confidence 34455789998663555555479999999987543211 1 111100000 00023578999 688888885
Q ss_pred Ec--------------CCeEEEEEee---CCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC-C
Q 010206 360 RD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N 421 (515)
Q Consensus 360 ~~--------------~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d-g 421 (515)
.. +..|..||+. + ++.+........... ..... .........++..++|+..++++.. +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~-~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDE-FEKKA-GKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHH-HHHHH-SSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCcccccc-ccccc-cccccCCceeEECCCCCEEEeCCCCCC
Confidence 43 3678899987 5 455444332110000 00000 0001113489999999999998887 7
Q ss_pred cEEEEecCCCCcceeeec--c----CCCceeeEEECCCCCeeEeecCCCeEEEec
Q 010206 422 LFRVFGCSEGSAESTTLE--A----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 470 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~ 470 (515)
.|...+.... ....+. . ..-..+.++++|++..|+....++.+..++
T Consensus 160 ~I~rV~pdG~--~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 160 AIARVSADGK--TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEECTTSC--CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eEEEEeCCCC--EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 7777666532 222221 1 112256899999999887776687776633
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.27 E-value=0.096 Score=46.89 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=93.6
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--~dg~i~~ 310 (515)
.....+++.+.+..|..+ ..+.|.++++...... .+ ..........+++.|.+ ..|+... ..+.|..
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~l-------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r 149 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK-VL-------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIER 149 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE-EE-------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEE
Confidence 356688898755555544 5789999998743221 11 11234557899999976 3455444 2577888
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.++..... ..+-. ..-.....++++|++..|+.++. +.|..+|+. +.....+.... .
T Consensus 150 ~~~dG~~~-----~~~~~-----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~-~-- 208 (318)
T 3sov_A 150 AGMDGSSR-----FIIIN-----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGS-L-- 208 (318)
T ss_dssp EETTSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSC-C--
T ss_pred EEcCCCCe-----EEEEE-----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCC-C--
Confidence 88753221 11100 00134688999998777777653 889999986 33333332111 0
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..-..+++. .+.++.+-...+.|..++..+++..
T Consensus 209 -----------~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 209 -----------PHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp -----------SCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred -----------CCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 001267775 3445556667789999998777443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.24 E-value=0.13 Score=47.81 Aligned_cols=184 Identities=7% Similarity=-0.088 Sum_probs=105.5
Q ss_pred CEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccccee
Q 010206 247 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 247 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
.+|+.+....|+..++....... +......+..++|++.+..++.+-...+.|+.+++.............
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~---------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTS---------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEE---------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEE
T ss_pred ceeEEeccceeEEEccCCcceeE---------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEE
Confidence 45555666788888887543221 112345678999998763455555567889888886532100000111
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
.........+++.+.+..|+..+ . +.|.+.++. +.....+...... ....
T Consensus 155 ------------~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~ 206 (400)
T 3p5b_L 155 ------------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 206 (400)
T ss_dssp ------------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred ------------eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence 11113567899988555565543 3 888888876 4444433321111 1237
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEee-cCCCeEEE
Q 010206 405 CCLSGDGGRVATGS--YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 468 (515)
Q Consensus 405 ~~~s~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~v~l 468 (515)
++++|.+.+|+... ..+.|...++... .....+.......+.+++++++..|..+ .....|..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 99999766665444 2478888888743 3322333444567899999876655444 44566666
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.22 E-value=0.11 Score=46.57 Aligned_cols=192 Identities=7% Similarity=-0.084 Sum_probs=109.9
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.+..++|++.+..|..+ ..+.|..+++........+ +...-.....+++.+.+.+++.+-...+.|.++++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 45688999865555554 6889999998755321111 11122346789999755356666666789999998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEEEeeCCCCCeeeEeeeccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPKL 390 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 390 (515)
..... ..+.. ........+++.|.+..|+..+ . +.|...++. +.....+....
T Consensus 109 dG~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~------ 164 (318)
T 3sov_A 109 DGSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSE------ 164 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSS------
T ss_pred CCCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECC------
Confidence 64321 11110 1113468899998766666544 2 677777665 44333332111
Q ss_pred cccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 391 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 391 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+..-..+++++++..|+.+ +..+.|..+++... ...............+++. .+..+.+-...+.|..
T Consensus 165 --------l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 165 --------IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILA 233 (318)
T ss_dssp --------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred --------CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEE
Confidence 0112379999977666544 56788999998743 3322333233444566664 3344445444555554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.14 Score=46.12 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=121.9
Q ss_pred cCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 234 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
...+.++.+.+++..++++..+.|. .... +....+.+.. ........+.++.|.+ + ..++. +.++.|. -.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i~-~s~D-gG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~--~S 104 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATLM-ETRD-GGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIML--HT 104 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEEE-EESS-TTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEE--EE
T ss_pred CCcEEEEEECCCCcEEEEcCCCeEE-EeCC-CCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEE--EE
Confidence 3578899998888888877777653 3333 2222211100 1111244688999987 4 45554 4556443 23
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
..+- +++...... ..+...+..+.+.++++.++++..+.| |.....++.-........
T Consensus 105 ~DgG------~tW~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~-------- 162 (327)
T 2xbg_A 105 TDGG------QSWSQIPLD------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI-------- 162 (327)
T ss_dssp SSTT------SSCEECCCC------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC--------
T ss_pred CCCC------CCceECccc------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC--------
Confidence 3321 112211100 011134667777777777777766543 332222333222221100
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEe--cC
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KG 471 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~--~~ 471 (515)
..+..+++.+++.+++.+...+..+-+|-....... .-......+..+++.+++..++.+ .+|.+++. ++
T Consensus 163 ------~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~ 234 (327)
T 2xbg_A 163 ------GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEP-HNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDN 234 (327)
T ss_dssp ------CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEE-EECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTE
T ss_pred ------cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeE-CCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCC
Confidence 014578999999988777554444444421111111 112344567788888988766554 46776663 22
Q ss_pred CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcE
Q 010206 472 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 510 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~ 510 (515)
.+.+.. +....+.....+.++++.+++..++++....+
T Consensus 235 G~tW~~-~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 235 SENWGE-LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp EEEECC-CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred CCeeEe-ccCCcccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 333311 11000112345889999998888888775545
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.28 Score=48.52 Aligned_cols=100 Identities=15% Similarity=0.079 Sum_probs=58.5
Q ss_pred eeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC-CCeeEeecCCC--eEEE--ecCCCCC
Q 010206 402 KFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSG--VVRR--VKGADNS 475 (515)
Q Consensus 402 v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~--~v~l--~~~~~~~ 475 (515)
...+++...++.| ++-+..+.|.+.++. ++.....+.......+.+++.|. |..+.+-.... .|.. .+|....
T Consensus 391 p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~ 469 (628)
T 4a0p_A 391 PYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE 469 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE
T ss_pred cceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE
Confidence 3489999886655 466678899999986 32332233344567889999995 44444432222 3433 3333221
Q ss_pred ccccCCccccccCCeeEEEEcCCCCEEEEEcC
Q 010206 476 ALDANGNAFDFSMKLLHLAWHPSENSIACAAS 507 (515)
Q Consensus 476 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~ 507 (515)
.+.. ..-...+.++++++.+.|..+..
T Consensus 470 --~l~~---~~l~~P~gla~D~~~~~LYw~D~ 496 (628)
T 4a0p_A 470 --VLFF---SGLSKPIALALDSRLGKLFWADS 496 (628)
T ss_dssp --EEEC---SSCSCEEEEEEETTTTEEEEEET
T ss_pred --EEEe---ccCCCccEEEEeCCCCEEEEEeC
Confidence 0111 01234588999998888876654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.099 Score=47.86 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=98.8
Q ss_pred EecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccc
Q 010206 241 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 318 (515)
Q Consensus 241 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 318 (515)
....++..++.+.++.||.-++.... .++.+. ... .-..|..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCS-SCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCC-cceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence 34567888888888999988887443 344332 121 12257889999999 7888764 55889988874321
Q ss_pred ccc--------ccceeeeccCCCccccccccccceeEEEEcc---CCCEEEE-EcCCeEEEEEeeCC-CCCeeeEeeecc
Q 010206 319 CDT--------HSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 385 (515)
Q Consensus 319 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s-~~~~~i~iwd~~~~-~~~~~~~~~~~~ 385 (515)
... ..+.+..... ......+|..+.|+| .+..|++ -+++.|++||+... .++. .+.....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~ 171 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN 171 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc
Confidence 111 0112222110 011246899999999 3456666 45699999999852 2333 3321110
Q ss_pred ccccccccccCCCccceeeEEEcCCCCEEEE--ecCCCcEEE
Q 010206 386 LRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSNLFRV 425 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~s~dg~i~i 425 (515)
.+.......+|.+++|++++-.|.. .+.+|.|+-
T Consensus 172 ------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 172 ------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 1111233355779999998876666 458888864
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.27 Score=44.46 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=44.2
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCc-ccccccccceeeeccCCCccccccccccceeEEEEcc-CCCEEEEEc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD 361 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~ 361 (515)
...+.++|+||+..++++-+..+.|..|++.. +.+.. .+.+.. .+....+++.+ +|++.+++.
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~--~~~~~~-------------~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP--LRVLSF-------------DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEC-------------SSEEEEEEECTTTCCEEEEEE
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEec--CEEEeC-------------CCCCceEEEeCCCCcEEEEec
Confidence 45689999999844444455678999999863 22211 122211 14567889998 599888654
Q ss_pred -C-CeEEEEE
Q 010206 362 -Y-MTLKLWD 369 (515)
Q Consensus 362 -~-~~i~iwd 369 (515)
+ +.|..|+
T Consensus 286 ~~g~~v~~~~ 295 (355)
T 3sre_A 286 PNGMRIFFYD 295 (355)
T ss_dssp SCHHHHHSCC
T ss_pred CCceEEEEEC
Confidence 3 4444444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0094 Score=59.98 Aligned_cols=182 Identities=7% Similarity=-0.080 Sum_probs=94.7
Q ss_pred EEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeee
Q 010206 249 FISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 328 (515)
Q Consensus 249 l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 328 (515)
|+.+....|+..++....... +......+..++|++.+..++++-...+.|+.+++............+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~---------~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-- 448 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTS---------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-- 448 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEEC---------CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--
T ss_pred EEecCccceEEEeCCCCccee---------eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--
Confidence 333444567777776543221 111223467889998762444444456789988886511000000000
Q ss_pred ccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 329 QEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
.........|++.+.+..|+..+ . +.|.++++. +.....+...... ....++
T Consensus 449 ----------~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d--g~~~~~l~~~~~~--------------~P~gia 502 (699)
T 1n7d_A 449 ----------SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFREQGS--------------KPRAIV 502 (699)
T ss_dssp ----------CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS--SCCEEEECCCSSC--------------CCCCEE
T ss_pred ----------eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC--CCceEEEEeCCCC--------------CcceEE
Confidence 00012345678886555555443 3 789888876 3333333211100 012789
Q ss_pred EcCCCCEEEEec-C-CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 407 LSGDGGRVATGS-Y-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 407 ~s~~~~~l~s~s-~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
++|++.+|+... . .+.|..+++... .....+.......+.++++|++.. +++-+..+.|..
T Consensus 503 vDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~ 566 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 566 (699)
T ss_dssp CCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred EccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence 998766555443 2 368888887633 221222233445678999987554 455555667776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.35 Score=43.23 Aligned_cols=159 Identities=6% Similarity=0.103 Sum_probs=84.5
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCCc-EEEEEecCCeEEEEecC---cccccccccceee
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLFE 327 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~-~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~ 327 (515)
+++|.+|++.........+......+..-...++.+++ +|.... +++....+|.+..|++. .+....+.++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68899997742221221110000000011145677787 675423 67778889999999984 3323333344444
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCC----CCeeeEeeeccccccccccccCCCccce
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDK 402 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (515)
.. +.+..+...+....|+.+.. ..|..++.+... +.+..+. ... ...++
T Consensus 178 lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~------------l~aDv 231 (355)
T 3amr_A 178 MN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRH------------LTRDI 231 (355)
T ss_dssp CS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSS------------BCSCE
T ss_pred CC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCc------------cccCc
Confidence 32 35778889988888888876 335444433211 1121111 010 11124
Q ss_pred eeEEE--cCCCC-EEEEec-CCCcEEEEecCCCCcceeee
Q 010206 403 FECCL--SGDGG-RVATGS-YSNLFRVFGCSEGSAESTTL 438 (515)
Q Consensus 403 ~~~~~--s~~~~-~l~s~s-~dg~i~iw~~~~~~~~~~~~ 438 (515)
..+++ .++++ ||++.+ .++++.+||.+.....+..+
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 46666 56666 666555 67799999997332333333
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.24 Score=46.92 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=89.8
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE-------ccCCCE
Q 010206 285 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH 356 (515)
Q Consensus 285 ~i~~i~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------s~~~~~ 356 (515)
....|+|+|. +.+++++-...+.|++.|+..+.+. .+-... .........++| +++|+.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----~l~~~~--------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----SPLNIN--------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----EEECCT--------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----EEEccC--------ccccCCCcEEEEeecccccCCCCCE
Confidence 4689999983 4255555555577999998876542 111100 001135789999 999997
Q ss_pred EEEEcC-C-------eEEEEEeeCCCCCe-----eeEeeeccccccccccccCCCccceeeEEEcCC-CCEEEEecCCCc
Q 010206 357 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNL 422 (515)
Q Consensus 357 l~s~~~-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~ 422 (515)
|+.+++ + .|.+++....+... ..+..-.. ...++++|+ +.++++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence 777654 3 25555533212221 12211110 127899995 555556667888
Q ss_pred EEEEecC-------CCCc------c----eee-ec-cCCCceeeEEECCCCCe-eEeecCCCeEEE
Q 010206 423 FRVFGCS-------EGSA------E----STT-LE-ASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 468 (515)
Q Consensus 423 i~iw~~~-------~~~~------~----~~~-~~-~~~~~v~~~~~~~~~~~-l~s~~~d~~v~l 468 (515)
|+.+|+. ++.. . ... +. ........++++|++.+ +++-+....|+.
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 9999997 4432 0 111 11 22344578999999995 444455566665
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.83 Score=45.10 Aligned_cols=143 Identities=11% Similarity=-0.056 Sum_probs=80.7
Q ss_pred ceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCC
Q 010206 344 SISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 420 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~d 420 (515)
.+.+++|.+.+..|+..+ . +.|..+++.. .....+.... . .....++++..++ +.++-+..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~-~-------------~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQ-I-------------AHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS-C-------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECC-C-------------CCcCceEEecccCcEEEEeCCC
Confidence 467899998666666554 3 8888888763 2222222111 0 0123789987544 55565677
Q ss_pred CcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecC--CCeEEE--ecCCCCCccccCCccccccCCeeEEEEc
Q 010206 421 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWH 496 (515)
Q Consensus 421 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s 496 (515)
+.|.+.++... .....+.......+.+++.|....|.-... ...|.. .+|.... .+.. ..-...+.++++
T Consensus 414 ~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~---~~l~~P~GlalD 487 (619)
T 3s94_A 414 DRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVN---TSLGWPNGLALD 487 (619)
T ss_dssp TEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC---SSCSCEEEEEEE
T ss_pred CcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEe---CCCCCCeeeEEc
Confidence 89999998744 332223344566789999987444433332 234443 2332211 0110 012356789999
Q ss_pred CCCCEEEEEcCC
Q 010206 497 PSENSIACAASN 508 (515)
Q Consensus 497 ~~~~~la~~~~~ 508 (515)
+++..|..+...
T Consensus 488 ~~~~~LY~aD~~ 499 (619)
T 3s94_A 488 YDEGKIYWGDAK 499 (619)
T ss_dssp TTTTEEEEEETT
T ss_pred ccCCEEEEEECC
Confidence 988887766543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.38 Score=39.69 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=63.6
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+..++|+|++.+.+. .+|.+.-.+..+.... ..... ...+ .+-.. -..+.|.|+| .+.++ .||.|.-++
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~-~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND-NWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEES
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcc-ccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeC
Confidence 36779999999998777 7777666665432211 00000 0000 01111 3688999998 66665 669888777
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeE
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTL 365 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i 365 (515)
-.+.... .+-... ..+-.+--..+..|.|.|+|.+.+.. ++.+
T Consensus 114 pP~~~~~-----~Wl~~a----~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 114 PPQSDTD-----NWIARA----TEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp CCCSTTC-----CHHHHS----EEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred CCcCCCC-----ceeccc----cEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 5332110 000000 00000011357999999999988888 7664
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.78 Score=42.20 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=94.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-------CCeE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg~i 308 (515)
.|.-=.|-. .+.|+-..+..|+-|++.....+.++.+..+ .+. ...|..-..+++. ++++..+- .|.+
T Consensus 107 ~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~-~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 107 DVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHS-SLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp CCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCG-GGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEE
T ss_pred CceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecch-hcc--cceEEEEEECCCC-CeEEEEeecccCCcccceE
Confidence 444444432 3355555778899999986555555544322 332 4667788888888 55553332 4678
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEEEc----CCeEEEEEeeCCCCCeeeEe
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRD----YMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s~~----~~~i~iwd~~~~~~~~~~~~ 381 (515)
.+|..+.+.. ..+.||.+....+.+.-+ ..+++.+. .++++|-++..+...-..+.
T Consensus 182 QLYS~er~~s-----------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 182 QLYSVDRKVS-----------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEESTTCCE-----------------EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEeecccccc-----------------chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 8888766531 124555555544444321 11222232 27899999864211111111
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
....... .+.-..+| ++| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 245 kk~vdv~-fppe~~~D--FPv-amqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 245 KKAVDVF-FPPEAQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp CEEEECC-CCTTSTTC--CEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ceeeeee-CCcccccC--cee-EEEecccCCEEEEEecCceEEEEecccceee
Confidence 0000000 00001111 112 6788888888888889999999999999544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.18 Score=46.18 Aligned_cols=126 Identities=11% Similarity=0.200 Sum_probs=79.3
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc-----------eecccCccccccCCceEEEEEecCCC--cEEEEE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFN-----------IVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 302 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~i~~~p~~~--~~l~~~ 302 (515)
.|..+..+|+|.+||...+..|.|-.+..+..... ...+.+.. .....+|..+.|+|-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 56779999999999998888999998874321110 11111110 11357899999999652 488999
Q ss_pred ecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc--C-CeEEEE
Q 010206 303 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLW 368 (515)
Q Consensus 303 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~-~~i~iw 368 (515)
..|+.|++||+..... +.. .++... ...-+......|.+++|.+++-.|...+ + |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~--~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQE--KPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTS--CCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCC--CCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999987321 111 222110 0000122235789999999887777643 5 777543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.9 Score=40.85 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=64.2
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEe--cCCeE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI 308 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~--~dg~i 308 (515)
.....|+|.|++.++++- ..|.|++++...+... .+..+ +............|+++|+ +..+.++-+ .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~-~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEV-PGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEEC-TTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eeccc-CceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 567899999999988888 4999999986543321 11111 1122233566899999995 214444322 34455
Q ss_pred EEEecCccc----ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEE
Q 010206 309 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 359 (515)
Q Consensus 309 ~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 359 (515)
.-|.+..+. ........+..... -..| .-..|.|.|||.+.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEE
Confidence 556554421 11111111221110 0122 3467999999988777
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.96 Score=40.47 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=64.9
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCc-ccceecccC
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIVDVKP 276 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~ 276 (515)
+....+|.+..|++ .....+....+..+.+.. ...+-.+...+....|..+ .+.-|..++.+.... ...++..-
T Consensus 147 fV~~k~G~~~q~~l-~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~- 222 (355)
T 3amr_A 147 MVTGKEGEFEQYEL-KADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA- 222 (355)
T ss_dssp EEECSSSEEEEEEE-EECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-
T ss_pred EEECCCCeEEEEEE-EeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-
Confidence 66777899999994 222333344455555432 3568888899888888888 666566666442210 11111110
Q ss_pred ccccccCCceEEEEE--ecCCCcEEEEEe-cCCeEEEEecC
Q 010206 277 ANMEDLTEVITSAEF--HPTHCNMLAYSS-SKGSIRLIDMR 314 (515)
Q Consensus 277 ~~~~~~~~~i~~i~~--~p~~~~~l~~~~-~dg~i~~wd~~ 314 (515)
........+..|++ .+++..+|++++ .+....+||.+
T Consensus 223 -~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 -DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 11222345788887 455422455555 57899999986
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.86 Score=40.21 Aligned_cols=124 Identities=8% Similarity=0.015 Sum_probs=68.2
Q ss_pred EEEccCCCEEEEEc---CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcE
Q 010206 348 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF 423 (515)
Q Consensus 348 ~~~s~~~~~l~s~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i 423 (515)
..|+++++.|+-.+ ++.-.||.+...+.....+..+.. .+++++++.|+-.+. ...|
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-------------------~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-------------------FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-------------------CCSEEETTEEEEECTTTCCE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-------------------eEeeEECCEEEEEeCCCceE
Confidence 36788888888765 345555655544555555543321 235677888775544 5678
Q ss_pred EEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCC--eEEE--ecCCCCCccccCCccccccCCeeEEEEcCCC
Q 010206 424 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 499 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 499 (515)
+.-++..+. ....+++ +.. ..+.|++.+|+-....+ .|.. ++|.... .+. ...+ ..|+|++
T Consensus 170 y~~~l~g~~-~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt------~~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQS-EALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLT------EANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTE-EEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECS------CSCE--EEEEEET
T ss_pred EEEECCCCC-EEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEe------CCCc--ceEEECC
Confidence 777876543 2222222 222 23558888887665543 3433 3333322 111 1222 4478888
Q ss_pred CEEEEE
Q 010206 500 NSIACA 505 (515)
Q Consensus 500 ~~la~~ 505 (515)
.+|..+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888755
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.77 E-value=1.1 Score=40.64 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=21.8
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEc
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFER 64 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~ 64 (515)
.....++|.|+|+.|.++...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 34578999999983444556799999884
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.76 E-value=1.1 Score=40.63 Aligned_cols=118 Identities=9% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCeEEEEecCCCC-EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC---CCcEEEEEec------
Q 010206 235 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~---~~~~l~~~~~------ 304 (515)
.....|+|.|+++ ++++-..+.|++++.. +.....+.++. ............++++|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-ccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4578999999999 7766667899999854 22111111111 111122456789999995 3245554333
Q ss_pred -CCeEEEEecCcccc-cccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 305 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 305 -dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
...|..|++..... .......+..... .....| .-..++|.|||.+.++-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~----~~~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPK----LSTGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSC----CBSSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCC----CCCCcc--cCccEEECCCCcEEEEE
Confidence 23465566543210 0000011111000 000112 23579999999766663
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=1.8 Score=42.76 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=90.3
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--CCeEEEE
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 311 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~~w 311 (515)
.+..+++++.+..|..+ ..+.|.+.++...... .+. ...-.....|++.|.. ..|+.... .+.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~-~l~-------~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~ 151 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ-VLV-------WKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRA 151 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-EEE-------CSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-EEE-------eCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEE
Confidence 34567777765555554 5788888888643221 111 1223457899999965 34444442 5677777
Q ss_pred ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeecccccc
Q 010206 312 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 389 (515)
Q Consensus 312 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 389 (515)
++..... ..+-. .-.....+++++++..|+.++. +.|..+|+.. .....+......
T Consensus 152 ~~dG~~~-----~~l~~------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~--- 209 (628)
T 4a0p_A 152 AMDGSER-----TTLVP------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH--- 209 (628)
T ss_dssp ETTSCSC-----EEEEC------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC---
T ss_pred eCCCCce-----EEEEC------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC---
Confidence 7754321 11100 1135688999998888877653 8899999863 222333221111
Q ss_pred ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCC
Q 010206 390 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 390 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~ 432 (515)
-..+++.. +.++++-...+.|...|..+++
T Consensus 210 ------------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 210 ------------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ------------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ------------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 12677764 4455555567888888876664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=1.3 Score=40.26 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=21.0
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEE
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~ 63 (515)
.....++|.|||+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 44678999999985555 5669998887
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.78 Score=43.27 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=62.1
Q ss_pred CCeEEEEecCCCCEEEEeC-CCcEEEEeCCCCCcccceecccCccc--cccCCceEEEEEecC---CCcEEEEEec----
Q 010206 235 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPT---HCNMLAYSSS---- 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~p~---~~~~l~~~~~---- 304 (515)
.....|+|.|+|+++++-. .+.|++++...+... .+..+.. .+ .........|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 4567999999999888874 457888876543321 1211111 11 113566789999995 4244444432
Q ss_pred --------CCeEEEEecCccc-ccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 305 --------KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 305 --------dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
...|.-|++.... ........+..... -..| ....|+|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H--~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDH--QSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSC--CEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCC--CCCeEeECCCCeEEEEE
Confidence 1345555543221 01111111211100 0112 46889999999887773
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.31 E-value=1.5 Score=39.32 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=25.9
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCc
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR 68 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~ 68 (515)
-..-..++|.|||.++++-...|.|++++..+++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 3456799999999988776558999988755443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.25 E-value=1.7 Score=39.40 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=20.8
Q ss_pred eeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCee
Q 010206 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV 148 (515)
Q Consensus 114 ~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 148 (515)
.-..|+| .+++. ++++..++.|.+++ +++.
T Consensus 32 ~P~~ia~--~pdG~-l~V~e~~g~I~~i~--~g~~ 61 (352)
T 2ism_A 32 VPWALAF--LPDGG-MLIAERPGRIRLFR--EGRL 61 (352)
T ss_dssp CEEEEEE--CTTSC-EEEEETTTEEEEEE--TTEE
T ss_pred CceEEEE--cCCCe-EEEEeCCCeEEEEE--CCCc
Confidence 3678999 45665 55566679999988 4543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=1.1 Score=37.06 Aligned_cols=154 Identities=8% Similarity=-0.094 Sum_probs=82.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccc-cccccceeEEEEccCCCEEEEEcC
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
..+..++|+|++ .+.+. .+|.+.-.+..+... ..+-... ..+= .+- ....++.|.|+|.+.++ ++
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~----t~IG~~Gw-~~F~a~~fD~~G~LYav-~d 106 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRA----KKIGNGGW-NQFQFLFFDPNGYLYAV-SK 106 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHC----EEEECSCG-GGCSEEEECTTSCEEEE-ET
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccc----cEeccccc-ccceEEEECCCCCEEEe-CC
Confidence 356799999988 66665 777766655543211 0010000 0000 000 11478999999998888 66
Q ss_pred CeEEEEEeeCCCCC--e--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc----
Q 010206 363 MTLKLWDINMDSGP--V--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE---- 434 (515)
Q Consensus 363 ~~i~iwd~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~---- 434 (515)
|.|.-++-.+.+.. + .+..+.... .++..+.|.|+|.+.+.. |+.++-+...++...
T Consensus 107 G~iyr~~pP~~~~~~Wl~~a~~vg~~gw-------------~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~ 171 (236)
T 1tl2_A 107 DKLYKASPPQSDTDNWIARATEVGSGGW-------------SGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLA 171 (236)
T ss_dssp TEEEEESCCCSTTCCHHHHSEEEECSSG-------------GGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHH
T ss_pred CEEEEeCCCcCCCCceeccccEeccCCC-------------CceEEEEECCCceEEEEe--CCcEEecCCCCCCCccccc
Confidence 88776654221111 0 011111111 124589999999987766 777654444432111
Q ss_pred -eeeec-cCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 435 -STTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 435 -~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
...+. ......+.+.+.+++.+.+.. ++.+..
T Consensus 172 ~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 172 RATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp HCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred ccceeccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 01111 233344556788888776665 665554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.14 E-value=4.2 Score=43.40 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=30.5
Q ss_pred cceeEEEEEeecCC----CcEEEeeeC-CCeEEEEEccCCeeEEEe
Q 010206 112 EEKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVKKVF 152 (515)
Q Consensus 112 ~~~v~~l~~~~~~~----~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 152 (515)
+..|.|+++.|.++ +.++++|.. |++++++++.+.+.....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~ 598 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE 598 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE
Confidence 35699999876443 468888986 999999999876554433
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.77 E-value=2 Score=40.45 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=36.8
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC---CCEEEE
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS 359 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---~~~l~s 359 (515)
.....++|.|+| +++++-...+.|++++..++... .+..+. ... ........+..|+|+|+ +..|+.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~--~~~----~~~~g~~Gllgia~~Pdf~~~g~lYv 96 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVK--TVFQVP--EIV----NDADGQNGLLGFAFHPDFKNNPYIYI 96 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEE--EEEECT--TCC----CCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEe--EEecCC--ccc----cccCCCCceeEEEECCCcCcCCEEEE
Confidence 356899999999 76665444457888876544321 011111 000 00011256789999995 455544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.68 E-value=2.9 Score=44.95 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=90.6
Q ss_pred CeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-------cCCeE
Q 010206 236 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSI 308 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-------~dg~i 308 (515)
.|.-=.|-. .+.|+-..+..|.-|++.....+..+.+.. ..+. ...|..-..+++. ++++..+ -.|.+
T Consensus 107 ~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 107 DVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCccccee
Confidence 444444432 334554567789999997544444433222 1222 4567777788887 5555333 34778
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEc--c-CCCEEEEEc----CCeEEEEEeeCCCCCeeeEe
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA--R-NGRHILSRD----YMTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~-~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~ 381 (515)
.+|..+.+.. ..+.||.+....+.+. + ....++.+. .+.++|-++..+...-..+.
T Consensus 182 QLyS~er~~s-----------------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 182 QLYSVDRKVS-----------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred eeeecccccc-----------------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 8888766432 1244554444444332 1 122222221 27889988864201111111
Q ss_pred eeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 382 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.....+. .+.-..++ ++| ++..|+.-..+..-+.-|.|++||+.++.++
T Consensus 245 kk~~~~~-~~~~~~~D--fpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 245 KKAVDVF-FPPEAQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ccccccc-CCcccccC--cce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence 0000000 00001111 112 6777887778888888999999999998544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.56 E-value=4.6 Score=41.04 Aligned_cols=247 Identities=13% Similarity=0.047 Sum_probs=123.8
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCc-ccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..|.++.-..+|.+-+...+| +..++..++.. .............-....|.++.-..++ ++-+ |+ ++-+..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLWI-AT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEEE-EE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEEE-Ee-CCcHhhcCc
Confidence 468888888888877665544 66666553221 1111100000000123468888888877 4443 55 457888998
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC----CCCee---eEeeeccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD----SGPVA---TFQVHEHL 386 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~----~~~~~---~~~~~~~~ 386 (515)
.+++.. .+....... ......|.++...++|++.+....+-|.++|.... ..... .+......
T Consensus 400 ~~~~~~-----~~~~~~~~~-----~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQFI-----HYNIVDNTG-----TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEEE-----EEEEECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcEE-----EeecCCCcC-----CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 776431 111100000 00113578888877776555443466888886420 01110 11100100
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeecc----CCCceeeEEECCCCCeeEeecC
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA----SKNPMRRQVQTPSRPSRPLGSL 462 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~ 462 (515)
.. ..|.++...++|++.+.++..+-|..+|..++. . ..+.. ....+.++....+|.+-+. +.
T Consensus 470 --------~~---~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~-~-~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~ 535 (758)
T 3ott_A 470 --------SG---MFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE-V-TKLFADELTGEKSPNYLLCDEDGLLWVG-FH 535 (758)
T ss_dssp --------SC---SCEEEEEECTTSCEEEEETTCSSEEEEETTTTE-E-EEECTTTSCGGGCEEEEEECTTSCEEEE-ET
T ss_pred --------cc---ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc-e-EEecCCCcCCCcccceEEECCCCCEEEE-ec
Confidence 00 125578888889877633334558888987652 2 22211 1234667777777765544 34
Q ss_pred CCeEEE-ecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 463 SGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 463 d~~v~l-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
.|..++ .+...... .....+ ....|.++... +| .|.+++.+|+..|+
T Consensus 536 ~Gl~~~~~~~~~~~~--~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~~~ 583 (758)
T 3ott_A 536 GGVMRINPKDESQQS--ISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWIID 583 (758)
T ss_dssp TEEEEECC--CCCCB--CCCCC----CCEEEEEEE-TT-EEEEEESSCEEEEE
T ss_pred CceEEEecCCCceEE--ecccCC-CccceEEEEEC-CC-CEEEECCCCeEEEc
Confidence 676666 11111110 000001 13457777653 44 56666677877765
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=7.6 Score=35.88 Aligned_cols=167 Identities=7% Similarity=0.079 Sum_probs=93.2
Q ss_pred cCCeEEEEecCCCCEEEE-e---C----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC--CCcEEEEEe
Q 010206 234 DYHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSS 303 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~ 303 (515)
...|..-..+++.++++. | . .|.+.+|..+..... .+++|......+.+..+ ...+|..+.
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 356677778889998874 3 2 367788888754322 45677655544444321 112444444
Q ss_pred cC---CeEEEEecCccc-ccccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe
Q 010206 304 SK---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 377 (515)
Q Consensus 304 ~d---g~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~ 377 (515)
.. +.+++.++.... ..... .+..+..-.+ ..-..---++..|+....++.-+. |.|++||+.+ +.++
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i 293 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 293 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence 32 788998885431 00000 0111111111 001123456888887777777665 9999999997 7777
Q ss_pred eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 378 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
..-+..... |+..+-+....-++.....|.|.--.++..
T Consensus 294 ~~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 665544332 234444444445555557777776666654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=90.53 E-value=3.6 Score=39.27 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=67.6
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEeeCC-----CC---CeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDINMD-----SG---PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
....+.++|||++++.++. .++.++|+.+- .+ +...+.+..... ..-.-.+|+++|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G------------lGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG------------LGPLHTTFDGRGNA 391 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC------------SCEEEEEECSSSEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC------------CcccEEEECCCCce
Confidence 3567889999999999764 89999998741 11 111111111100 01236899999965
Q ss_pred EEEecCCCcEEEEecCCC---------CcceeeeccCCCceeeEE-----ECCCCCeeEeec
Q 010206 414 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLGS 461 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~s~~ 461 (515)
..|---|..|.-|++... ...+..+..|..+-...+ ..|+|+||++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 566678999999999753 123455666665543332 268999998874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=88.20 E-value=29 Score=37.68 Aligned_cols=153 Identities=9% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 254 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
..+|.|.|+..+....+ ..-..-+.-++|.. +.+|.-. ...+.+||+.+..... .+..+
T Consensus 47 ~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~klk----s~~~~---- 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMK----AHTMT---- 105 (1630)
T ss_pred CceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhhc----ccccC----
Confidence 45788999987654321 11122345578887 6776654 7899999998865432 22211
Q ss_pred ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
.+|.-=.|-. .+.|+--++..|.-|++.....|.+.+..|....+ ..|..-..+++.++
T Consensus 106 ---------e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~-----------~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 106 ---------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQKW 164 (1630)
T ss_pred ---------CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhccc-----------CeeEEeeeCCCCCe
Confidence 2454445543 34555556668999999754677777776654421 12456778888888
Q ss_pred EEEec-------CCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 414 VATGS-------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 414 l~s~s-------~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
++..+ -.|.+.+|..+.+ ..+.+++|......+..
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 76332 3588899998843 55678888766554444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.60 E-value=21 Score=33.50 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=62.8
Q ss_pred CCeEEEEecCCCC--EEEEeCCCcEEEEeCCCCCcccceecccCcccc----ccCCceEEEEEecC----CCcEEEEEec
Q 010206 235 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~p~----~~~~l~~~~~ 304 (515)
.....|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+ + .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567999999986 676668899999975422111112222111111 12456889999996 4 44444332
Q ss_pred C------------CeEEEEecCccc--cc--ccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC
Q 010206 305 K------------GSIRLIDMRQSA--LC--DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 362 (515)
Q Consensus 305 d------------g~i~~wd~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 362 (515)
+ ..|.-|.+..+. .. ......++.... ...| ....|+|.|||.+.++-.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------HRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------SSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------CCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134445554321 10 011112221110 1223 3578999999988777443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.46 E-value=16 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=16.1
Q ss_pred CCCcEEEEEecC-----CeEEEEecCccc
Q 010206 294 THCNMLAYSSSK-----GSIRLIDMRQSA 317 (515)
Q Consensus 294 ~~~~~l~~~~~d-----g~i~~wd~~~~~ 317 (515)
++ .+++.|+.+ ..+.+||+.+.+
T Consensus 159 ~~-~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 159 SG-VIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp TT-EEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred CC-EEEEECCCCCCcccceEEEEeCCCCc
Confidence 55 677777764 457888887654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=85.96 E-value=32 Score=34.85 Aligned_cols=243 Identities=11% Similarity=0.035 Sum_probs=121.5
Q ss_pred CCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecC
Q 010206 235 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 314 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~ 314 (515)
..|.++....++.+.+...+ -+..++..+.... ..... .........|.++...+++ ..|-.|+. +-+..+|..
T Consensus 146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFE--GIPLP-VHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp SCEEEEEECTTCCEEEEETT-EEEEEETTTTEEE--EECCC-CCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETT
T ss_pred CeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceE--EecCC-CccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCC
Confidence 35677777777776665444 4667776644311 11000 0000113358888888776 44444554 457788877
Q ss_pred cccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccc
Q 010206 315 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
+++.. .+.. + ....|.++...++|.+.+.. ++-+.+++..+ . ....+......... +.
T Consensus 220 ~~~~~-----~~~~---------l--~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~~---l~ 277 (758)
T 3ott_A 220 TGQIK-----QTEA---------F--HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQS---LT 277 (758)
T ss_dssp TTEEE-----EEEE---------E--EEEEEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTTS---CS
T ss_pred CCeEE-----eccC---------C--CCCeEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcCc---CC
Confidence 65421 1110 0 11358888888888776655 54577777653 2 23333211110000 00
Q ss_pred cCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec-----cCCCceeeEEECCCCCeeEeecCCCeEEEe
Q 010206 395 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 469 (515)
Q Consensus 395 ~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~ 469 (515)
. ..|.++....+|.+-+ |+..| +.++..... ....... .....|.++....+|.+-+. +.+|..++.
T Consensus 278 -~---~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~~~~ 349 (758)
T 3ott_A 278 -N---NIIWNIFADQEHNIWL-GTDYG-ISLSRYNSA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLIRFT 349 (758)
T ss_dssp -C---SCEEEEEECTTCCEEE-EESSS-EEEECCCC--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEEEES
T ss_pred -c---CeEEEEEEcCCCCEEE-EeCCc-ccccccCCc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcceeec
Confidence 0 1255788887777544 44556 555433211 1111111 12345778887777765433 356766661
Q ss_pred cCC-CCCccc-cC---CccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 470 KGA-DNSALD-AN---GNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 470 ~~~-~~~~~~-~~---~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
... ...... .. ....-....|.++.-..+|++.+ |+.+|+..|+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~GL~~~~ 398 (758)
T 3ott_A 350 DPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDGSINRYD 398 (758)
T ss_dssp CTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETTEEEEEE
T ss_pred ccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCCcHhhcC
Confidence 111 000000 00 00001134688888888877544 4467888875
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=22 Score=32.33 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCceEEEEEe---cC----CCcEEEEE-ecCCeEEEEecCcccccccccceeeeccCCCcccccccc----ccceeEEEE
Q 010206 283 TEVITSAEFH---PT----HCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI----IASISDIKF 350 (515)
Q Consensus 283 ~~~i~~i~~~---p~----~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~ 350 (515)
...+..+++. |. + .++..+ ...+.|.++|+.+++...-....+. ++ ........+. ...+..+++
T Consensus 151 ~S~l~di~VD~~~~~~~c~~-~~aYItD~~~~gLIVydl~~~~swRv~~~~~~-pd-~~~~~~i~G~~~~~~~Gi~gIaL 227 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSE-TFVYITNFLRGALFIYDHKKQDSWNVTHPTFK-AE-RPTKFDYGGKEYEFKAGIFGITL 227 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCS-EEEEEEETTTTEEEEEETTTTEEEEEECGGGS-CC-SCEEEEETTEEEEECCCEEEEEE
T ss_pred CCccceEEEecccCCCCCCc-cEEEEEcCCCCcEEEEECCCCcEEEEccCCCc-cc-cCcceEECCEEeEeccCceEEEe
Confidence 4567888887 22 2 233333 3477899999998864321101110 00 0001111121 247899999
Q ss_pred ccC----CCEEEEEcCCeEEEEEeeC----CCCCeeeE--eeeccccccccccccCCCccceeeEEEc-CCCCEEEEecC
Q 010206 351 ARN----GRHILSRDYMTLKLWDINM----DSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 419 (515)
Q Consensus 351 s~~----~~~l~s~~~~~i~iwd~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~s~ 419 (515)
+|+ ++.|+-..-..-++|.+.+ .......+ .+... ...+-..++++ .+|.++++--.
T Consensus 228 sp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg------------~~s~~~~~~~D~~~G~ly~~~~~ 295 (381)
T 3q6k_A 228 GDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG------------KYNDAIALAYDPKTKVIFFAEAN 295 (381)
T ss_dssp CCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC------------TTCCEEEEEECTTTCEEEEEESS
T ss_pred cCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC------------CCCCcceEEEeCCCCeEEEEecc
Confidence 998 7888765433335555542 01111111 11111 00111245675 67877777788
Q ss_pred CCcEEEEecCC
Q 010206 420 SNLFRVFGCSE 430 (515)
Q Consensus 420 dg~i~iw~~~~ 430 (515)
.+.|..|+..+
T Consensus 296 ~~aI~~w~~~~ 306 (381)
T 3q6k_A 296 TKQVSCWNTQK 306 (381)
T ss_dssp SSEEEEEETTS
T ss_pred CCeEEEEeCCC
Confidence 89999999874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=82.64 E-value=24 Score=30.85 Aligned_cols=106 Identities=9% Similarity=0.089 Sum_probs=56.4
Q ss_pred EEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecC--CeEEEEecCc
Q 010206 240 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 315 (515)
Q Consensus 240 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d--g~i~~wd~~~ 315 (515)
..++++++.|.-. ....|...++...... .+. .+... ..+.|++ ..|+..... ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~----------~~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFY----------DCNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEE----------CSCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEe----------CCCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 4567888888865 3677888887654322 111 12222 3466888 666665543 3555555554
Q ss_pred ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC---CeEEEEEeeCCCCCeeeEe
Q 010206 316 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ 381 (515)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---~~i~iwd~~~~~~~~~~~~ 381 (515)
... ..+.. ..+ ..|+|+++.|+-+++ +.|..-++. +...+++.
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~ 262 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA 262 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence 331 11110 123 237888888886533 445444443 54444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 515 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-05 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 8e-09
Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 45/351 (12%)
Query: 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA 161
+ + KSL+ + +++ YL + +KT ++++V + + + K
Sbjct: 52 DVELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108
Query: 162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVV------- 214
N S S + + G+ A + + + ++
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 215 -----------------TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 256
T + +L G + D + DG+ + D
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 257 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316
+ +W+ E + +D + + + + S F + S S++L +++ +
Sbjct: 229 VRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNA 286
Query: 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSG 375
+ + + +N +ILS + WD
Sbjct: 287 NNKSDSKTPNSGT----CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGN 341
Query: 376 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 426
P+ Q H + S+ L + ATGS R++
Sbjct: 342 PLLMLQGHRN---------SVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 36/286 (12%), Positives = 76/286 (26%), Gaps = 30/286 (10%)
Query: 38 ISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92
I ++ F G LATG R + + Q S +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152
+ + E + + D+ +++W + + +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 153 DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212
D H ++ G ++ S D V L
Sbjct: 244 DSENES---------GTGHKDSVYSVVFTRDG---QSVVSGSLD-----RSVKLWNLQNA 286
Query: 213 VVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271
S +G + H + S++ + E +S D + W+ + S N
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----SGNP 342
Query: 272 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 315
+ + + + V + P + N+ A S R+ ++
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 36/292 (12%), Positives = 85/292 (29%), Gaps = 37/292 (12%)
Query: 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 292
H + + ++DGE + + ++ + + + D AN + +S+
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 293 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 352
+ + +S + D ++++ + S F
Sbjct: 121 DLYIRSVCFSPDG------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174
Query: 353 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 412
+ + T+++WD+ + GDG
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV----------------TTVAVSPGDGK 218
Query: 413 RVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 466
+A GS RV+ G +E+ + K+ + V T S GSL V
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278
Query: 467 RRVKGADNSALDANGNAFDFSMKL---------LHLAWHPSENSIACAASNS 509
+ + + + + ++ L +A ++ I + +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 6e-08
Identities = 43/324 (13%), Positives = 94/324 (29%), Gaps = 33/324 (10%)
Query: 112 EEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170
+ ++ + + ++S + D TIK+W + ++ + +
Sbjct: 17 RSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 171 HVSAIPKSYMANGGCGERNFGC--ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRI 228
S + +D + + +V + +T + +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 229 YA----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 283
Y H + + N DG S +D + +W + + + +
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVE 189
Query: 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 343
+ + E + + S +K S + S D K+++ +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DN 248
Query: 344 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 402
+ + F G+ ILS D TL++WD + T HE +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHE------------HFVTS- 294
Query: 403 FECCLSGDGGRVATGSYSNLFRVF 426
V TGS +V+
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 54/373 (14%), Positives = 107/373 (28%), Gaps = 61/373 (16%)
Query: 74 RRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK---------INKIRWCQSA 124
R++ E + + + D + +++ + I + W
Sbjct: 8 RQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW--GT 65
Query: 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHP---------EKAAGNGPIFGSHVSAI 175
+S L + ++ D + +W G +
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY 235
K+ N G S + + T ++ G + H
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 236 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294
+ S+S D F+S D LW++ I + F P
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHESDINAICFFP- 236
Query: 295 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354
+ N A S + RL D+R T+ II I+ + F+++G
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTY--------------SHDNIICGITSVSFSKSG 282
Query: 355 RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413
R +L+ D +WD + H+ + + ++ DG
Sbjct: 283 RLLLAGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC---LGVTDDGMA 326
Query: 414 VATGSYSNLFRVF 426
VATGS+ + +++
Sbjct: 327 VATGSWDSFLKIW 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.44 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.41 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.12 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.91 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.91 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.85 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.78 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.46 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.25 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.24 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.23 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.17 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.47 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.27 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.14 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.01 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.45 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.44 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.42 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.1 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.24 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.24 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.01 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.57 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.71 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.7 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.27 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 89.49 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 87.96 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.34 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 87.18 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 86.03 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.54 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 84.2 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.57 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.37 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.59 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-39 Score=298.17 Aligned_cols=285 Identities=11% Similarity=0.169 Sum_probs=229.5
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|+|++|+|+|++||+|+ ||.|+|||+.+.... .........+|.
T Consensus 46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~~h~--------- 97 (337)
T d1gxra_ 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCLNRD--------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECSCTT---------
T ss_pred EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeecCCC---------
Confidence 4568999999999999999999997 889999999766432 011122345666
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++| ++++++|++++.|++|++||+..........
T Consensus 98 ---~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------------ 136 (337)
T d1gxra_ 98 ---NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------ 136 (337)
T ss_dssp ---SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE------------------------------------
T ss_pred ---CcEEEEEE--cCCCCEEEEeecccccccccccccccccccc------------------------------------
Confidence 88999999 4567899999999999999987543211100
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+..|...+.+++|+|++..++++ .|+.|++||+.+.+..
T Consensus 137 ----------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~ 176 (337)
T d1gxra_ 137 ----------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp ----------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ----------------------------------------cccccccccccccccccccccccccccccccccccccccc
Confidence 34677889999999999999998 8999999999876543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. ....|...|.+++|++++ ..+++++.|+.+++||+++++... . ..|...|.++
T Consensus 177 ~--------~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~~----~-------------~~~~~~i~~l 230 (337)
T d1gxra_ 177 R--------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQLQ----Q-------------HDFTSQIFSL 230 (337)
T ss_dssp E--------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE----E-------------EECSSCEEEE
T ss_pred c--------cccccccccccccccccc-cccccccccccccccccccceeec----c-------------cccccceEEE
Confidence 2 446688999999999998 899999999999999999876432 1 2345789999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|++++|++++. +.+++||+.. .+. .....|... |++++|+|++++|++++.||.|++||
T Consensus 231 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~---------------i~~v~~s~~g~~l~s~s~Dg~i~iwd 293 (337)
T d1gxra_ 231 GYCPTGEWLAVGMESSNVEVLHVNK-PDK-YQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTS-SCE-EEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEcccccccceeccccccccccccc-ccc-ccccccccc---------------cceEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999999865 9999999985 433 334444433 56999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.+++.+ .. ..|..+|.+++|+|++++|++|+.||+|++
T Consensus 294 ~~~~~~~-~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v 332 (337)
T d1gxra_ 294 TPYGASI-FQ-SKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TTTCCEE-EE-EECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCCEE-EE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 9987443 33 357789999999999999999999999998
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7e-38 Score=285.66 Aligned_cols=281 Identities=17% Similarity=0.258 Sum_probs=236.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++|+|+|++++||||+.||.|+|||+.+++. ..++.+|.
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------~~~~~~h~---------- 59 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------- 59 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS----------
T ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEEeCCC----------
Confidence 468999999999999999999999999999999987764 35677887
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++| ++++.+++++..++.+.+|+....+....
T Consensus 60 --~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 96 (317)
T d1vyhc1 60 --DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------- 96 (317)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC---------------------------------------
T ss_pred --CcEEEEee--ecccccccccccccccccccccccccccc---------------------------------------
Confidence 88999999 45677999999999999998776542111
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
..+|...+.++.++++++.++++ .|+.+++||+++++...
T Consensus 97 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 137 (317)
T d1vyhc1 97 ---------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137 (317)
T ss_dssp ---------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---------------------------------------cccccccceeeeccCCCceEEeeccCcceeEeecccceeee
Confidence 24566788999999999999998 89999999998776443
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...+.+++|+|++ .+|++++.|+.|++|+++++..... +.+|...+.++.
T Consensus 138 --------~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~----------------~~~~~~~i~~~~ 192 (317)
T d1vyhc1 138 --------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAE----------------LREHRHVVECIS 192 (317)
T ss_dssp --------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEEE
T ss_pred --------EEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEE----------------EecCCCCceEEE
Confidence 556789999999999998 8999999999999999988764321 233445566666
Q ss_pred EccC--------------------CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 350 FARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 350 ~s~~--------------------~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
|+|+ +.++++++. +.|++||+.+ ++++.++.+|... |.+++|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~---------------v~~~~~~ 256 (317)
T d1vyhc1 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFH 256 (317)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEEC
T ss_pred EeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCC---------------EEEEEEC
Confidence 6543 456777764 9999999986 8888888887755 5589999
Q ss_pred CCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 409 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 409 ~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
|++++|++|+.||.|++||++++ .++.++.+|..+|++++|+|++++|++|+.||+|++
T Consensus 257 ~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i 315 (317)
T d1vyhc1 257 SGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315 (317)
T ss_dssp SSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999987 455899999999999999999999999999999998
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-38 Score=296.71 Aligned_cols=317 Identities=15% Similarity=0.269 Sum_probs=221.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|+||+|+|||++||+|+ |+.|+|||+.+++...... ... .....+..........|.
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~---------- 121 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS----DDS-AANKDPENLNTSSSPSSD---------- 121 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEEC----C------------------CCC----------
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeec----ccc-cccccccccccccccCCC----------
Confidence 357999999999999999999997 8899999998776431110 000 000001111111223343
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|++++|+ +++++|++++.||.|++||...++....
T Consensus 122 --~~V~~l~~s--~~~~~l~s~~~dg~v~i~~~~~~~~~~~--------------------------------------- 158 (388)
T d1erja_ 122 --LYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMI--------------------------------------- 158 (388)
T ss_dssp --CBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------
T ss_pred --CCEEEEEEC--CCCCcceecccccccccccccccccccc---------------------------------------
Confidence 789999994 5678999999999999999887653221
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 269 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 269 (515)
..+|...|.++++++++..++++ .++.+++||.++.....
T Consensus 159 ---------------------------------------~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 199 (388)
T d1erja_ 159 ---------------------------------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199 (388)
T ss_dssp ---------------------------------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------------------------------------cccccccccccccccccccccccccceeeeeeecccccccc
Confidence 24678899999999999999998 89999999998665432
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
. ..+.....++.+.+..+.+|++|+.|+.|++||++++..... +... .....+|..+|.+++
T Consensus 200 --------~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~----~~~~-----~~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 200 --------T-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER----LDSE-----NESGTGHKDSVYSVV 261 (388)
T ss_dssp --------E-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE----EC-----------CCCSSCEEEEE
T ss_pred --------c-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee----eccc-----cccccCCCCCEEEEE
Confidence 1 224455566667664448999999999999999988764322 1111 112456888999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|++++|++++. +.|++||+.. .....................+. ..|++++|+|++++|++|+.||.|++||+
T Consensus 262 ~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~ 337 (388)
T d1erja_ 262 FTRDGQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDK 337 (388)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ECCCCCEEEEEECCCcEEEEeccC-Cccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999999999875 9999999985 33222221111100000000011 12569999999999999999999999999
Q ss_pred CCCCcceeeeccCCCceeeEEE------CCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKNPMRRQVQ------TPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~d~~v~l 468 (515)
+++ ..+.++++|..+|.++++ +|++++|++|+.||+|++
T Consensus 338 ~~~-~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i 382 (388)
T d1erja_ 338 KSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382 (388)
T ss_dssp TTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred CCC-cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence 987 556889999999998875 678999999999999999
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-37 Score=288.27 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=204.3
Q ss_pred ccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 35 ~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
.++|+|++|+|||++||+|+.||.|+||+..+++.. ....+.+|. ..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---------------------~~~~l~gH~------------~~ 53 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHN------------GQ 53 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCS------------SC
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---------------------EEEEecCCC------------CC
Confidence 478999999999999999999999999998766432 456688898 88
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|++|+|+| ++++|++++.|++|++||+.++.......
T Consensus 54 V~~l~fsp--~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----------------------------------------- 90 (371)
T d1k8kc_ 54 VTGVDWAP--DSNRIVTCGTDRNAYVWTLKGRTWKPTLV----------------------------------------- 90 (371)
T ss_dssp EEEEEEET--TTTEEEEEETTSCEEEEEEETTEEEEEEE-----------------------------------------
T ss_pred EEEEEECC--CCCEEEEEECCCeEEEEeecccccccccc-----------------------------------------
Confidence 99999964 57799999999999999998765333211
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 273 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 273 (515)
+.+|...|.+++|+|+++.|+++ .|++|++|+++.........
T Consensus 91 -----------------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~- 134 (371)
T d1k8kc_ 91 -----------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK- 134 (371)
T ss_dssp -----------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-
T ss_pred -----------------------------------cccccccccccccccccccceeecccCcceeeeeeccccccccc-
Confidence 24677889999999999999998 89999999987655432211
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC--CccccccccccceeEEEEc
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s 351 (515)
.....|...|.+++|+|++ .+|++|+.|+.|++||+................... .......+|...|.+++|+
T Consensus 135 ---~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 210 (371)
T d1k8kc_ 135 ---HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210 (371)
T ss_dssp ---EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred ---ccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence 1345688999999999998 899999999999999987654322111110000000 1112345688899999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|++++|++++. +.|++||+.. ++.+..+..|... |.+++|+|++++|++|+ |+.+++|....
T Consensus 211 ~~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~---------------v~s~~fs~d~~~la~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 211 ANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAGH-DCFPVLFTYDS 273 (371)
T ss_dssp SSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred cccccccccccCCcceEEeeec-ccceeeeeccccc---------------ceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence 99999999865 9999999996 7888888777654 56999999999888765 67777776654
Q ss_pred C
Q 010206 431 G 431 (515)
Q Consensus 431 ~ 431 (515)
.
T Consensus 274 ~ 274 (371)
T d1k8kc_ 274 A 274 (371)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.6e-37 Score=278.99 Aligned_cols=288 Identities=11% Similarity=0.131 Sum_probs=224.7
Q ss_pred ccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (515)
.+++.+.+++++|+|+.||.+. ++.|.+|++.+... ...+.+|.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----------------------~~~~~~H~------------ 58 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------ 58 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----------------------eEEEcCCC------------
Confidence 4556677899999999999985 66799999987653 24577888
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|++++|+ +++++|++|+.||+|++||+.+++....
T Consensus 59 ~~v~~~~~s--p~g~~latg~~dg~i~iwd~~~~~~~~~----------------------------------------- 95 (311)
T d1nr0a1 59 HQTTVAKTS--PSGYYCASGDVHGNVRIWDTTQTTHILK----------------------------------------- 95 (311)
T ss_dssp SCEEEEEEC--TTSSEEEEEETTSEEEEEESSSTTCCEE-----------------------------------------
T ss_pred CCEEEEEEe--CCCCeEeccccCceEeeeeeeccccccc-----------------------------------------
Confidence 889999995 5688999999999999999987542111
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C--CCcEEEEeCCCCCccc
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSF 269 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~ 269 (515)
..+..|...|.+++|+|++++|+++ . +..+++|++++.+...
T Consensus 96 -----------------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~ 140 (311)
T d1nr0a1 96 -----------------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140 (311)
T ss_dssp -----------------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred -----------------------------------cccccccCccccccccccccccccccccccccccccccccccccc
Confidence 0135678899999999999999886 3 5679999998766442
Q ss_pred ceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 270 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
.+.+|...|++++|+|+++..|++|+.|+.|++||+++++... .+.+|..+|.++.
T Consensus 141 --------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~----------------~~~~~~~~i~~v~ 196 (311)
T d1nr0a1 141 --------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS----------------TFGEHTKFVHSVR 196 (311)
T ss_dssp --------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE----------------EECCCSSCEEEEE
T ss_pred --------cccccccccccccccccceeeeccccccccccccccccccccc----------------ccccccccccccc
Confidence 5678999999999999985578999999999999999876422 2456778999999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEec
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 428 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~ 428 (515)
|+|+++++++++. +.|++||+.. +.....+....... . ..-..|++++|+|++++|++|+.||.|+|||+
T Consensus 197 ~~p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~-----~---~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~ 267 (311)
T d1nr0a1 197 YNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKN-----V---AHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267 (311)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSS-----C---SSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCcccccccccccccccccccccc-cccccccccccccc-----c---cccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999864 9999999986 55555543221110 0 11123679999999999999999999999999
Q ss_pred CCCCcceeeeccCCC-ceeeEEECCCCCeeEeecCCCeEEE
Q 010206 429 SEGSAESTTLEASKN-PMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 429 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++ .+..+++.|.. ....+.+.+++..|++++.||.|++
T Consensus 268 ~t~-~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~ 307 (311)
T d1nr0a1 268 ATL-KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307 (311)
T ss_dssp TTT-EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred CCC-cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEE
Confidence 987 45567776653 2334455556778999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-36 Score=279.40 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=222.6
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|.+++| ++++++|++|+ ||.|++||+.+.......
T Consensus 52 ~~V~~v~f--s~~g~~latg~-dg~V~iWd~~~~~~~~~~---------------------------------------- 88 (337)
T d1gxra_ 52 EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSPV---------------------------------------- 88 (337)
T ss_dssp SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSCS----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEE-CCEEEEEEccCCccccee----------------------------------------
Confidence 88999999 56788999987 899999999875321100
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
. .....+|...|.+++|+|++++|+++ .|+.|++||+........
T Consensus 89 ---------------~------------------~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~- 134 (337)
T d1gxra_ 89 ---------------S------------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK- 134 (337)
T ss_dssp ---------------E------------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE-
T ss_pred ---------------E------------------EeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc-
Confidence 0 00025788999999999999999998 899999999875543221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+..|...+.+++|+|++ .++++++.|+.|++||+++++... ...+|...|.+++|+
T Consensus 135 -----~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~----------------~~~~~~~~v~~l~~s 192 (337)
T d1gxra_ 135 -----AELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVR----------------QFQGHTDGASCIDIS 192 (337)
T ss_dssp -----EEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEEC
T ss_pred -----ccccccccccccccccccc-cccccccccccccccccccccccc----------------ccccccccccccccc
Confidence 1456788999999999998 899999999999999998876421 134566889999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+++..+++++. +.+++||+++ ++.+..+. +... |++++|+|++++|++|+.|+.+++||+++
T Consensus 193 ~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~---------------i~~l~~~~~~~~l~~~~~d~~i~i~d~~~ 255 (337)
T d1gxra_ 193 NDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred cccccccccccccccccccccc-ceeecccc-cccc---------------eEEEEEcccccccceeccccccccccccc
Confidence 99999999875 9999999986 65555443 2222 56899999999999999999999999987
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS- 509 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~- 509 (515)
+. ......|..++..++|+|++++|++++.|+.|++++..... . .....|...|.+++|+|++++|++++.|+
T Consensus 256 ~~--~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~---~-~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 256 PD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---S-IFQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp SC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---E-EEEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred cc--cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC---E-EEEccCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 63 24667899999999999999999999999999994322211 1 12345788999999999999999988655
Q ss_pred EEEEe
Q 010206 510 LYMYY 514 (515)
Q Consensus 510 ~~i~~ 514 (515)
+.||.
T Consensus 330 I~vWd 334 (337)
T d1gxra_ 330 ATVYE 334 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.8e-36 Score=276.13 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=225.4
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+|++++||+|+.||.|+|||+.+++. ...+..|.
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-----------------------~~~~~~~~---------- 97 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-----------------------VHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSC----------
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-----------------------EEEEeccc----------
Confidence 458999999999999999999999999999999987653 35667787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++| ++++.++++++.|+.+++|+...........
T Consensus 98 --~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~------------------------------------- 136 (340)
T d1tbga_ 98 --SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVS------------------------------------- 136 (340)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEE-------------------------------------
T ss_pred --ccEEeeEe--eccceeeeeecccceeecccccccccccccc-------------------------------------
Confidence 88999999 4567799999999999999976543111000
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
.. +.+|...........+........+.....++........
T Consensus 137 ------------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 178 (340)
T d1tbga_ 137 ------------------------------------RE-LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp ------------------------------------EE-ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE-
T ss_pred ------------------------------------ee-cccccccccccccccccccccccccccccccccccccccc-
Confidence 00 2345555555544444433333478888888877554332
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
....+...+....+.+.+ .++++|+.|+.|++||+++++... .+.+|..+|++++|
T Consensus 179 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~----------------~~~~h~~~i~~v~~ 234 (340)
T d1tbga_ 179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQ----------------TFTGHESDINAICF 234 (340)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEE----------------EECCCSSCEEEEEE
T ss_pred -------cccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEE----------------EEeCCCCCeEEEEE
Confidence 234467778999999988 899999999999999998876532 24567789999999
Q ss_pred ccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+|++++|++|+. +.|++||+.. ......+...... ..+.+++|+|++++|++|+.||.|++||+.
T Consensus 235 ~p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEeCCCeEEEEeecc-ccccccccccccc-------------CceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence 999999999875 9999999985 5544444322211 125689999999999999999999999999
Q ss_pred CCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++ ....++.+|..+|++++|+|++++|++|+.||.|++
T Consensus 301 ~~-~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 301 KA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence 87 566899999999999999999999999999999998
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-35 Score=269.82 Aligned_cols=305 Identities=15% Similarity=0.189 Sum_probs=233.1
Q ss_pred ccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCc
Q 010206 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (515)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 167 (515)
|.......+.+|. +.|++|+|+| ++++|++|+.|++|++||+.+++....
T Consensus 5 p~~~~~~~L~GH~------------~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~---------------- 54 (317)
T d1vyhc1 5 PRPPEKYALSGHR------------SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERT---------------- 54 (317)
T ss_dssp CCSSCSCEEECCS------------SCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEE----------------
T ss_pred CCCCccEEEcCCC------------CCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEE----------------
Confidence 3333445788998 8999999954 567999999999999999987653221
Q ss_pred cCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCC
Q 010206 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 247 (515)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (515)
+.+|...|.+++|+|++.
T Consensus 55 --------------------------------------------------------------~~~h~~~V~~~~~~~~~~ 72 (317)
T d1vyhc1 55 --------------------------------------------------------------LKGHTDSVQDISFDHSGK 72 (317)
T ss_dssp --------------------------------------------------------------ECCCSSCEEEEEECTTSS
T ss_pred --------------------------------------------------------------EeCCCCcEEEEeeecccc
Confidence 356888999999999999
Q ss_pred EEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCccccccccccee
Q 010206 248 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 248 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
.++++ .++.+.+|+....+... .+..|...+.++.|+|++ ..+++++.|+.+++||+++++... .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~----~- 138 (317)
T d1vyhc1 73 LLASCSADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVK----T- 138 (317)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEE----E-
T ss_pred ccccccccccccccccccccccc--------ccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeee----E-
Confidence 99998 89999999987665432 456788999999999998 899999999999999998876422 1
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccC-----CCcc
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN-----DSIF 400 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 400 (515)
+.+|...+.+++|+|++++|++++. +.|++|++.+ .+....+..+......+...... ....
T Consensus 139 -----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 206 (317)
T d1vyhc1 139 -----------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEAT 206 (317)
T ss_dssp -----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred -----------EccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccc
Confidence 4556678999999999999999875 9999999986 77777776665442211100000 0000
Q ss_pred ceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC
Q 010206 401 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN 480 (515)
Q Consensus 401 ~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~ 480 (515)
......+..++.++++++.|+.|++|++.++ ..+.++.+|..++.+++++|++++|++|+.||.|++++-. ..+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~ 282 (317)
T d1vyhc1 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCM 282 (317)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---TSCCC
T ss_pred cceeeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC---CCcEE
Confidence 1112334456778999999999999999987 5557899999999999999999999999999999993322 11222
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
.....|...|++++|+|++++|++++.|+ +.||.
T Consensus 283 ~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 23446889999999999999999988765 88884
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-36 Score=272.94 Aligned_cols=288 Identities=11% Similarity=0.106 Sum_probs=207.1
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeec-ccCCCcccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 109 (515)
..+|.++|++++|+|||++||+|+.||.|++||+.+++.. ..+ .+|.
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-----------------------~~~~~~h~--------- 55 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-----------------------RVFPDVHA--------- 55 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------------ECSSCSCS---------
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----------------------EEEcCCCC---------
Confidence 4689999999999999999999999999999999876632 223 4566
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|++++|+| ++ .+++++.|+.+++|+.............. .....+. .++++++|+.+
T Consensus 56 ---~~v~~v~~~~--~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~-------~~~~s~~g~~~--- 114 (299)
T d1nr0a2 56 ---TMITGIKTTS--KG-DLFTVSWDDHLKVVPAGGSGVDSSKAVAN-----KLSSQPL-------GLAVSADGDIA--- 114 (299)
T ss_dssp ---SCEEEEEECT--TS-CEEEEETTTEEEEECSSSSSSCTTSCCEE-----ECSSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEeec--cc-eeecccceeeEEEeccCCccccccccccc-----ccccccc-------ccccccccccc---
Confidence 7899999954 44 47778889999999987543211110000 0011122 67888888864
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
+ ++.++.+.+|+ ... ... ......+.+++|+|++++|+++ .|+.|++||+++.+..
T Consensus 115 ---------~-~~~~~~i~~~~--~~~---------~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~ 171 (299)
T d1nr0a2 115 ---------V-AACYKHIAIYS--HGK---------LTE--VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVS 171 (299)
T ss_dssp ---------E-EEESSEEEEEE--TTE---------EEE--EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEE
T ss_pred ---------c-ccccccccccc--ccc---------ccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 3 34556788887 111 111 1234567899999999999998 8999999999865432
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.. ....|...|.+++|+|++ .+|++++.|+.|++||+.++..... ...+.+|..+|+++
T Consensus 172 ~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~-------------~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 172 EV-------KTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFELAH-------------TNSWTFHTAKVACV 230 (299)
T ss_dssp EE-------EEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEESC-------------CCCCCCCSSCEEEE
T ss_pred cc-------cccccccccccccccccc-ccccccccccccccccccccccccc-------------cccccccccccccc
Confidence 11 234588999999999998 8999999999999999987653221 11246677899999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|++++|++|+. +.|++||+.+ ......+..+.... ..+..+ +++++++|++++.|+.|++||
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~~~~~~------------~~v~~~-~~~~~~~l~s~s~D~~i~iWd 296 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNK-PSDHPIIIKGAHAM------------SSVNSV-IWLNETTIVSAGQDSNIKFWN 296 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTC-TTSCCEEETTSSTT------------SCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred cccccccceEEEcCCCEEEEEECCC-CCcceEEEecCCCC------------CcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence 99999999999875 9999999986 33322222111111 012344 456778999999999999999
Q ss_pred cC
Q 010206 428 CS 429 (515)
Q Consensus 428 ~~ 429 (515)
+.
T Consensus 297 l~ 298 (299)
T d1nr0a2 297 VP 298 (299)
T ss_dssp CC
T ss_pred cc
Confidence 84
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.1e-35 Score=267.96 Aligned_cols=253 Identities=15% Similarity=0.200 Sum_probs=200.7
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|+|++|+|+|++||+|+.||.|+|||+.+.... ....+..|.
T Consensus 54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~---------- 102 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS---------- 102 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS----------
T ss_pred EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---------------------ccccccccc----------
Confidence 4589999999999999999999999999999999876532 334567787
Q ss_pred ccceeEEEEEeecCCCcEEEeeeC--CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~ 188 (515)
..|.+++|+ +++++|++++. +..+++|++++++....
T Consensus 103 --~~v~~v~~s--~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~------------------------------------- 141 (311)
T d1nr0a1 103 --GPVKDISWD--SESKRIAAVGEGRERFGHVFLFDTGTSNGN------------------------------------- 141 (311)
T ss_dssp --SCEEEEEEC--TTSCEEEEEECCSSCSEEEEETTTCCBCBC-------------------------------------
T ss_pred --Ccccccccc--cccccccccccccccccccccccccccccc-------------------------------------
Confidence 889999994 56778888875 46699999886542110
Q ss_pred ccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE-EEEe-CCCcEEEEeCCCCC
Q 010206 189 NFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISN 266 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~ 266 (515)
+.+|...|.+++|+|++++ |++| .|+.|++||+++.+
T Consensus 142 -----------------------------------------l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~ 180 (311)
T d1nr0a1 142 -----------------------------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 180 (311)
T ss_dssp -----------------------------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred -----------------------------------------ccccccccccccccccceeeecccccccccccccccccc
Confidence 3567889999999999885 6677 89999999998765
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... .+..|...|+++.|+|++ ++|++++.|+.|++||++++... ..++.. .....+|...|+
T Consensus 181 ~~~--------~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~~-----~~~~~~h~~~V~ 242 (311)
T d1nr0a1 181 FKS--------TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFEDD-----SLKNVAHSGSVF 242 (311)
T ss_dssp EEE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBCT-----TSSSCSSSSCEE
T ss_pred ccc--------ccccccccccccccCccc-ccccccccccccccccccccccc----cccccc-----cccccccccccc
Confidence 442 456789999999999998 89999999999999999887542 222211 122467889999
Q ss_pred EEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEE
Q 010206 347 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 425 (515)
Q Consensus 347 ~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~i 425 (515)
+++|+|++++|++|+. +.|+|||+++ +++++++..+..... ..+.+.+++++|++++.||.|++
T Consensus 243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~ 307 (311)
T d1nr0a1 243 GLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINF 307 (311)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEE
Confidence 9999999999999875 9999999986 788888876654311 13445556678999999999999
Q ss_pred EecC
Q 010206 426 FGCS 429 (515)
Q Consensus 426 w~~~ 429 (515)
||++
T Consensus 308 wd~d 311 (311)
T d1nr0a1 308 VNPE 311 (311)
T ss_dssp EETT
T ss_pred EeCC
Confidence 9974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.2e-35 Score=271.71 Aligned_cols=323 Identities=12% Similarity=0.190 Sum_probs=237.0
Q ss_pred ccccccce-EEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 31 ~~~h~~~v-~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
..+|.+.| +|++| +|++||+|+.||+|+|||+.+++ .+.++.+|.
T Consensus 8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~--------- 53 (355)
T d1nexb2 8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 53 (355)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----------------------EEEEEECCS---------
T ss_pred ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEECCC---------
Confidence 45898875 66665 57899999999999999998765 446788998
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
+.|++++|+| +.+|++++.|++|++|++...+............ ......+.+++..+
T Consensus 54 ---~~V~~l~~s~---~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--- 111 (355)
T d1nexb2 54 ---GGVWALKYAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-------------RCLDIVEYKNIKYI--- 111 (355)
T ss_dssp ---SCEEEEEEET---TTEEEEEETTCCEEEEETTTTEEEEEECCCSSCE-------------EEEEEEEETTEEEE---
T ss_pred ---CCEEEEEEcC---CCEEEEEecccccccccccccccccccccccccc-------------ccccccccccccee---
Confidence 8899999964 3589999999999999999887665544332210 00134566777777
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccc----------------eeeeeeccCcCCeEEEEecCCCCEEEEe-
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFISA- 252 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~- 252 (515)
++++.++.+++|+ +.......... ........|...+. .+.++++.++++
T Consensus 112 ---------~~~~~d~~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~ 178 (355)
T d1nexb2 112 ---------VTGSRDNTLHVWK--LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGS 178 (355)
T ss_dssp ---------EEEETTSEEEEEE--CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEE
T ss_pred ---------eeecCCCcEEEEE--ccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeec
Confidence 8999999999999 43322110000 00001123333333 345678889888
Q ss_pred CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCC
Q 010206 253 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 332 (515)
Q Consensus 253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 332 (515)
.|+.|++||+++.+... ...++...+.++.|+|++ ..+++++.|+.|++||++++....
T Consensus 179 ~d~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~------------ 237 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMY------------ 237 (355)
T ss_dssp TTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEEE------------
T ss_pred ccceeeeeeccccccee--------eeeccccccccccccccc-eeeecccccceEEeeecccccccc------------
Confidence 89999999998765442 345677889999999998 899999999999999998876532
Q ss_pred CccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCC
Q 010206 333 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 411 (515)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 411 (515)
.+.+|...|.++++++ ++|++|+. |.|++||+.+ .. ..+..|..... ...++++++
T Consensus 238 ----~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~--------------~~~~~~~~~ 294 (355)
T d1nexb2 238 ----TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND-YS--RKFSYHHTNLS--------------AITTFYVSD 294 (355)
T ss_dssp ----EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTT-CC--EEEEEECTTCC--------------CCCEEEECS
T ss_pred ----cccccccccccccccc--ceeeeeecccccccccccc-cc--eecccccCCce--------------EEEEEcCCC
Confidence 2456778999999874 68888765 9999999975 33 34445543321 134677888
Q ss_pred CEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 412 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 412 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
++|++|+ ||.|++||+++++.+...+.+|..+|.+++++|+ ..+++++.||.++|
T Consensus 295 ~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l 349 (355)
T d1nexb2 295 NILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349 (355)
T ss_dssp SEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence 8877765 8999999999986554677899999999999986 57888999999877
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-34 Score=269.65 Aligned_cols=301 Identities=14% Similarity=0.209 Sum_probs=215.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
+.|++|+| +++|++|++|+ |++|++||+.+++............ .+..
T Consensus 63 ~~V~~l~f--s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~---------------------~~~~-------- 110 (388)
T d1erja_ 63 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN---------------------KDPE-------- 110 (388)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc---------------------cccc--------
Confidence 89999999 55788988876 8999999999987665543321100 0000
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
.........|...|.+++|+|++++|++| .|+.|++||....+...
T Consensus 111 -------------------------------~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~-- 157 (388)
T d1erja_ 111 -------------------------------NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-- 157 (388)
T ss_dssp ---------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred -------------------------------ccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccc--
Confidence 00001125788899999999999999998 89999999998765443
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
...+|...|.++++++++ ..+++++.++.+++||+++...... ..+.....++.++
T Consensus 158 ------~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~-----------------~~~~~~~~~~~~~ 213 (388)
T d1erja_ 158 ------ILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLT-----------------LSIEDGVTTVAVS 213 (388)
T ss_dssp ------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE-----------------EECSSCEEEEEEC
T ss_pred ------cccccccccccccccccc-ccccccccceeeeeeeccccccccc-----------------ccccccccccccc
Confidence 456799999999999998 8999999999999999987653211 1112344555565
Q ss_pred c-CCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 352 R-NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 352 ~-~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+ ++++|++|+. +.|++||+.+ +.....+....... ......|++++|+|++++|++++.||.|++||+.
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~ 284 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESG--------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTT-CCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCeEEEEcCCCeEEEeeccc-Cccceeeccccccc--------cCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence 5 8899999865 9999999986 66555543221110 0111236699999999999999999999999998
Q ss_pred CCCcc-----------eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEE---
Q 010206 430 EGSAE-----------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW--- 495 (515)
Q Consensus 430 ~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--- 495 (515)
++... ......|...+.+++++|++++|++|+.||.|++++... .+......+|.+.|+++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~---~~~~~~l~~H~~~V~~~~~~~~ 361 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS---GNPLLMLQGHRNSVISVAVANG 361 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECSS
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC---CcEEEEEeCCCCCEEEEEEecC
Confidence 65322 234557889999999999999999999999999943221 1222234468899999975
Q ss_pred ---cCCCCEEEEEcCCc-EEEEe
Q 010206 496 ---HPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 496 ---s~~~~~la~~~~~~-~~i~~ 514 (515)
+|++++||+++.|+ +.||+
T Consensus 362 ~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 362 SSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CTTCTTCEEEEEEETTSEEEEEE
T ss_pred cccCCCCCEEEEEeCCCEEEEEe
Confidence 67899999888665 88996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.7e-33 Score=250.38 Aligned_cols=289 Identities=12% Similarity=0.115 Sum_probs=211.7
Q ss_pred eeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCC
Q 010206 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (515)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (515)
....++||. ..|++++|+ +++++|++|+.|++|++||+.+++....
T Consensus 4 ~~~~~~GH~------------~~V~~l~~s--~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 49 (299)
T d1nr0a2 4 IDQVRYGHN------------KAITALSSS--ADGKTLFSADAEGHINSWDISTGISNRV-------------------- 49 (299)
T ss_dssp EEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEC--------------------
T ss_pred cceEcCCCC------------CCcEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEE--------------------
Confidence 456789998 899999994 5678999999999999999987653321
Q ss_pred CcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 172 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+...|...|.+++|+|+++++++
T Consensus 50 ---------------------------------------------------------~~~~h~~~v~~v~~~~~g~~~~~ 72 (299)
T d1nr0a2 50 ---------------------------------------------------------FPDVHATMITGIKTTSKGDLFTV 72 (299)
T ss_dssp ---------------------------------------------------------SSCSCSSCEEEEEECTTSCEEEE
T ss_pred ---------------------------------------------------------EcCCCCCcEEEEEeeccceeecc
Confidence 02467789999999999988877
Q ss_pred eCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccC
Q 010206 252 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 331 (515)
Q Consensus 252 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 331 (515)
+.|+.+++|+.......... .....+...+.+++|+|++ .++++ +.++.+++|+.......
T Consensus 73 ~~d~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~g-~~~~~-~~~~~i~~~~~~~~~~~------------ 133 (299)
T d1nr0a2 73 SWDDHLKVVPAGGSGVDSSK-----AVANKLSSQPLGLAVSADG-DIAVA-ACYKHIAIYSHGKLTEV------------ 133 (299)
T ss_dssp ETTTEEEEECSSSSSSCTTS-----CCEEECSSCEEEEEECTTS-SCEEE-EESSEEEEEETTEEEEE------------
T ss_pred cceeeEEEeccCCccccccc-----ccccccccccccccccccc-ccccc-ccccccccccccccccc------------
Confidence 78999999998754322110 1234567889999999998 66554 45678999996442210
Q ss_pred CCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCee-eEeeeccccccccccccCCCccceeeEEEcC
Q 010206 332 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSG 409 (515)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 409 (515)
.....+.+++|+|++++|++|+. +.|++||+.+ .+... ....|... |++++|+|
T Consensus 134 --------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-~~~~~~~~~~~~~~---------------i~~~~~~~ 189 (299)
T d1nr0a2 134 --------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVSEVKTIVHPAE---------------ITSVAFSN 189 (299)
T ss_dssp --------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEEEEEEEECSSC---------------EEEEEECT
T ss_pred --------cccccccccccccccccccccccccccccccccc-cccccccccccccc---------------cccccccc
Confidence 01135788999999999999865 9999999985 43322 22333332 56999999
Q ss_pred CCCEEEEecCCCcEEEEecCCCCcce--eeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccccc
Q 010206 410 DGGRVATGSYSNLFRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 487 (515)
Q Consensus 410 ~~~~l~s~s~dg~i~iw~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~ 487 (515)
++++|++++.|+.|++||+.++.... ..+.+|..+|++++|+|++++|++|+.|+.|++++-..............+.
T Consensus 190 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 269 (299)
T d1nr0a2 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269 (299)
T ss_dssp TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCC
Confidence 99999999999999999998764432 4567899999999999999999999999999994322221111111112234
Q ss_pred CCeeEEEEcCCCCEEEEEcCC-cEEEEeC
Q 010206 488 MKLLHLAWHPSENSIACAASN-SLYMYYA 515 (515)
Q Consensus 488 ~~i~~~~~s~~~~~la~~~~~-~~~i~~~ 515 (515)
..|..+.| +++++|++++.| .+.+|+.
T Consensus 270 ~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 270 SSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp SCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred CcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 56777766 456777777654 5899974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-32 Score=253.52 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=229.7
Q ss_pred cceeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
..+...++++|. +.|++|+|+ +++.+|++|+.||+|++||+.+++....
T Consensus 44 ~~~~~~tL~GH~------------~~I~~l~~s--~~~~~l~sgs~Dg~v~iWd~~~~~~~~~----------------- 92 (340)
T d1tbga_ 44 QMRTRRTLRGHL------------AKIYAMHWG--TDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92 (340)
T ss_dssp CCCEEEEECCCS------------SCEEEEEEC--TTSSEEEEEETTTEEEEEETTTTEEEEE-----------------
T ss_pred ceeeeEEECCCC------------CCEEEEEEC--CCCCEEEEEECCCceeeeecccceeEEE-----------------
Confidence 344567789998 899999995 5677999999999999999988764322
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
+..|...|.+++|+|++.+
T Consensus 93 -------------------------------------------------------------~~~~~~~v~~v~~~~~~~~ 111 (340)
T d1tbga_ 93 -------------------------------------------------------------IPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp -------------------------------------------------------------EECSCSCEEEEEECTTSSE
T ss_pred -------------------------------------------------------------EecccccEEeeEeecccee
Confidence 2467789999999999999
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
++++ .|+.+++|+........... ..+.+|...........+ ..+.....+.....++.........
T Consensus 112 l~~~~~d~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 179 (340)
T d1tbga_ 112 VACGGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTT------ 179 (340)
T ss_dssp EEEEETTCCEEEEESSSSCSCCCEE----EEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEE------
T ss_pred eeeecccceeecccccccccccccc----eecccccccccccccccc--ccccccccccccccccccccccccc------
Confidence 9998 89999999987655433221 245567777766666665 4788888999999988766543111
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
...+...+....+.+.+.++++|.. +.|++||+++ ++++..+.+|... |++++
T Consensus 180 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~---------------i~~v~ 233 (340)
T d1tbga_ 180 ----------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAIC 233 (340)
T ss_dssp ----------EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSC---------------EEEEE
T ss_pred ----------ccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeCCCCC---------------eEEEE
Confidence 2223467888999999999999865 9999999986 7888888877654 56999
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcce-eeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCcccc
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 485 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~ 485 (515)
|+|++++|++|+.||.|++|++....... .....+..++..++++|++++|++|+.||.|++++... .+......+
T Consensus 234 ~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~ 310 (340)
T d1tbga_ 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAG 310 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT---CCEEEEECC
T ss_pred ECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC---CcEEEEEcC
Confidence 99999999999999999999999764332 23456778899999999999999999999999943221 122333446
Q ss_pred ccCCeeEEEEcCCCCEEEEEcCCc-EEEEe
Q 010206 486 FSMKLLHLAWHPSENSIACAASNS-LYMYY 514 (515)
Q Consensus 486 ~~~~i~~~~~s~~~~~la~~~~~~-~~i~~ 514 (515)
|...|++++|+|++++|++++.|+ +.||+
T Consensus 311 H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 899999999999999999888654 88995
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.9e-34 Score=259.72 Aligned_cols=300 Identities=14% Similarity=0.158 Sum_probs=209.1
Q ss_pred cceEEEEECCCCCeEEeecCCC-eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccce
Q 010206 36 DIISAIEFDKSGDHLATGDRGG-RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (515)
..+++++|+|+|+.||.++.+. .|+.|+...... .....+.+|. ...
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~gh~-----------~~~ 65 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTGHG-----------SSV 65 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECTTT-----------TSC
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeCCC-----------CCC
Confidence 4568999999999999886553 345555433221 1334566664 157
Q ss_pred eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 115 v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
|++++|+|..++.+|++|+.||+|++||+..++.................+.+. .++|+++|+.+..
T Consensus 66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-------~v~~s~~~~~l~~------ 132 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-------DISWDFEGRRLCV------ 132 (325)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-------EEEECTTSSEEEE------
T ss_pred EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-------EEEECCCCCccce------
Confidence 999999988888899999999999999997654322222211111112234444 7899999998722
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE-EEEe-CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~ 272 (515)
+..+.++.+.+|+ ... .++... +.+|...|.+++|+|+++. ++++ .|+.+++||....+......
T Consensus 133 ----~~~~~~~~~~~~~--~~~------~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~ 199 (325)
T d1pgua1 133 ----VGEGRDNFGVFIS--WDS------GNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199 (325)
T ss_dssp ----EECCSSCSEEEEE--TTT------CCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred ----eeccccceEEEEe--ecc------ccccee-eeecccccccccccccccceEEEeecccccccccccccccceecc
Confidence 3345567888887 221 223333 4689999999999999875 5556 89999999987665443221
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc-
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA- 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s- 351 (515)
....|...|.+++|+|++..+|++++.|+.|++||+++++.. .. +.+|..++.++.|+
T Consensus 200 -----~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~----~~------------l~~~~~~v~~~~~s~ 258 (325)
T d1pgua1 200 -----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL----KY------------IEDDQEPVQGGIFAL 258 (325)
T ss_dssp -----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE----EE------------CCBTTBCCCSCEEEE
T ss_pred -----cccCCCCccEEeeeccccceeccccccccceeeeeecccccc----cc------------ccccccccccceeee
Confidence 446688899999999985589999999999999999887653 22 33444555555554
Q ss_pred --cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCC-CCEEEEecCCCcEEEEe
Q 010206 352 --RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFG 427 (515)
Q Consensus 352 --~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~s~dg~i~iw~ 427 (515)
|+|++|++++ |+.|+|||+.+ ++++..+..+..... +..+++.+. +.+|++++.||.|++||
T Consensus 259 ~~~dg~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 259 SWLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLG-------------NQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp EESSSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGG-------------GCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eccCCCEEEEEeCCCeEEEEECCC-CCEEEEEEecCCccc-------------CeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 6889999976 49999999996 788888877664322 113333332 34789999999999999
Q ss_pred c
Q 010206 428 C 428 (515)
Q Consensus 428 ~ 428 (515)
+
T Consensus 325 l 325 (325)
T d1pgua1 325 L 325 (325)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-32 Score=253.73 Aligned_cols=311 Identities=15% Similarity=0.208 Sum_probs=219.9
Q ss_pred cccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (515)
...+|.+.|.+ +++++|++||||+.||.|+|||+.+++ .+.++.+|.
T Consensus 11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~h~--------- 57 (342)
T d2ovrb2 11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 57 (342)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEEeCCC---------
Confidence 35689999865 466789999999999999999998776 346788898
Q ss_pred cccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccc
Q 010206 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (515)
Q Consensus 110 ~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~ 189 (515)
..|.+++|+ ++ +|++++.|+++++|+................ ...........
T Consensus 58 ---~~V~~v~~~--~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~--- 110 (342)
T d2ovrb2 58 ---GGVWSSQMR--DN--IIISGSTDRTLKVWNAETGECIHTLYGHTST-----------------VRCMHLHEKRV--- 110 (342)
T ss_dssp ---SCEEEEEEE--TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC-----------------EEEEEEETTEE---
T ss_pred ---CCEEEEEeC--CC--ccccceecccccccccccccceeccccccee-----------------Eeeeecccccc---
Confidence 889999995 33 8999999999999999887655444332111 11222223333
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
..+..++.+.+|+ ..... ..... ..+.. . .....+....++++ .|+.|++||.+.....
T Consensus 111 ---------~~~~~d~~i~~~~--~~~~~------~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~ 170 (342)
T d2ovrb2 111 ---------VSGSRDATLRVWD--IETGQ------CLHVL-MGHVA-A-VRCVQYDGRRVVSGAYDFMVKVWDPETETCL 170 (342)
T ss_dssp ---------EEEETTSEEEEEE--SSSCC------EEEEE-ECCSS-C-EEEEEECSSCEEEEETTSCEEEEEGGGTEEE
T ss_pred ---------cccccceeEEEee--ccccc------ceeee-ecccc-c-ceeeccccceeeeecCCCeEEEeecccceee
Confidence 6677788899988 33221 11111 11222 2 22334455566666 8999999999865543
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
. .+.+|...+..+. +++ ..+++|+.||.|++||++.++... .+.+|...+.++
T Consensus 171 ~--------~~~~~~~~~~~~~--~~~-~~l~s~~~dg~i~~~d~~~~~~~~----------------~~~~~~~~v~~~ 223 (342)
T d2ovrb2 171 H--------TLQGHTNRVYSLQ--FDG-IHVVSGSLDTSIRVWDVETGNCIH----------------TLTGHQSLTSGM 223 (342)
T ss_dssp E--------EECCCSSCEEEEE--ECS-SEEEEEETTSCEEEEETTTCCEEE----------------EECCCCSCEEEE
T ss_pred E--------EEcCccccccccc--CCC-CEEEEEeCCCeEEEeecccceeee----------------EecccccceeEE
Confidence 2 4456666665554 455 789999999999999998876432 134566778887
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
.++ +++|++++. +.|++||+.. .+....+..+..... . ..+++++++++++|+.||.|++||
T Consensus 224 ~~~--~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 224 ELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS------------A--VTCLQFNKNFVITSSDDGTVKLWD 286 (342)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSS------------C--EEEEEECSSEEEEEETTSEEEEEE
T ss_pred ecC--CCEEEEEcCCCEEEEEeccc-ccccccccccceeee------------c--eeecccCCCeeEEEcCCCEEEEEE
Confidence 776 468898765 9999999986 666666654433211 1 234445677999999999999999
Q ss_pred cCCCCcceeee-----ccCCCceeeEEECCCCCeeEeecCCCe
Q 010206 428 CSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 465 (515)
Q Consensus 428 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~ 465 (515)
+++++.+ ..+ .+|..+|++++++|++.++++|+.||+
T Consensus 287 ~~tg~~i-~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 287 LKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp TTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCCCCEE-EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence 9988543 343 367889999999999999999999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-31 Score=250.20 Aligned_cols=302 Identities=11% Similarity=0.123 Sum_probs=215.1
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
++|++++| ++++++|++++.|+.|++||+.+++......
T Consensus 8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~--------------------------------------- 46 (371)
T d1k8kc_ 8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 46 (371)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCEEEEEE---------------------------------------
Confidence 67999999 5678899999999999999988765332211
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++|+|++++|+++ .|++|++||+.+.......
T Consensus 47 -------------------------------------l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 47 -------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp -------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred -------------------------------------ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence 46899999999999999999998 8999999999865433221
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.+.+|...|.+++|+|++ +.|++|+.|+.|++|++....... ... .....|...|.+++|+
T Consensus 90 ------~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~----~~~--------~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 90 ------VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW----VCK--------HIKKPIRSTVLSLDWH 150 (371)
T ss_dssp ------ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE----EEE--------EECTTCCSCEEEEEEC
T ss_pred ------cccccccccccccccccc-ccceeecccCcceeeeeecccccc----ccc--------cccccccccccccccc
Confidence 446688999999999998 899999999999999987654211 111 1134567889999999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc-ccc--ccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL-RPK--LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
|++++|++|+. +.|++||+.. ............. ... ............|.+++|+|++++|++++.|+.|++||
T Consensus 151 p~~~~l~s~s~D~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd 229 (371)
T d1k8kc_ 151 PNSVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229 (371)
T ss_dssp TTSSEEEEEETTSCEEEEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred ccccceeccccCcEEEEEeecc-CccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence 99999999865 9999999874 2211111100000 000 00000011122367999999999999999999999999
Q ss_pred cCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE--ecCCC--------CC-ccc------------------
Q 010206 428 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGAD--------NS-ALD------------------ 478 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l--~~~~~--------~~-~~~------------------ 478 (515)
+.++ .....+..|..++.+++|+|+++++++|+ |+.+++ .+... .. ...
T Consensus 230 ~~~~-~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (371)
T d1k8kc_ 230 ADKK-MAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307 (371)
T ss_dssp GGGT-TEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred eecc-cceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence 9987 45578899999999999999999998877 454443 11100 00 000
Q ss_pred ---------cCCccccccCCeeEEEEcCCC----CEEEEEcCC-cEEEEe
Q 010206 479 ---------ANGNAFDFSMKLLHLAWHPSE----NSIACAASN-SLYMYY 514 (515)
Q Consensus 479 ---------~~~~~~~~~~~i~~~~~s~~~----~~la~~~~~-~~~i~~ 514 (515)
.......|...|+++++.|.+ ..+++++.| .+++|+
T Consensus 308 ~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~ 357 (371)
T d1k8kc_ 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357 (371)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred eEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence 000001377889999998865 357777754 599996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-31 Score=251.52 Aligned_cols=317 Identities=9% Similarity=0.112 Sum_probs=203.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|.++++++ ++|++++.|+.|+|||..+....... . .......|.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~----------------~-~~~~~~~~~---------- 60 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK----------------D-KSYSHFVHK---------- 60 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG----------------G-GEEEEECCT----------
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc----------------c-eeEeeeecc----------
Confidence 358999999999875 68999999999999997655432000 0 001111122
Q ss_pred ccceeEE---EEEee--cCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCc
Q 010206 111 IEEKINK---IRWCQ--SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (515)
Q Consensus 111 ~~~~v~~---l~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~ 185 (515)
..+.. ....+ ..+..++++++.||.|++|++............
T Consensus 61 --~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~------------------------------ 108 (393)
T d1sq9a_ 61 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE------------------------------ 108 (393)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE------------------------------
T ss_pred --CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc------------------------------
Confidence 11111 11111 112346778899999999997654311110000
Q ss_pred cccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-----CCEEEEe-CCCcEEE
Q 010206 186 GERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINL 259 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~-~d~~i~i 259 (515)
. ..... ...+...+..++|.++ +.+++++ .|+++++
T Consensus 109 -------------------------~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~v 150 (393)
T d1sq9a_ 109 -------------------------K--LDLLD-----------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150 (393)
T ss_dssp -------------------------E--ECCSC-----------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred -------------------------c--cceee-----------eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEE
Confidence 0 00000 1223345566666554 4567776 8999999
Q ss_pred EeCCCCCccccee----------cccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 260 WNLEISNQSFNIV----------DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 260 wd~~~~~~~~~~~----------~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
|++.......... .........+...+.+++|+|++ +|++|+.|+.|++||+++++.. ..++.
T Consensus 151 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~----~~~~~- 223 (393)
T d1sq9a_ 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL----YNFES- 223 (393)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE----EEEEC-
T ss_pred EEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccc----ccccc-
Confidence 9986432211100 00011223456678999999986 8899999999999999987653 22222
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEcC-C---eEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
...+.+|..+|.+++|+|+|++|++|++ + .|++||+.+ ++.+..+.............. ..-..|+++
T Consensus 224 -----~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~--gH~~~V~~l 295 (393)
T d1sq9a_ 224 -----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEF--AHSSWVMSL 295 (393)
T ss_dssp -----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCB--SBSSCEEEE
T ss_pred -----ccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeee--cccCceeee
Confidence 1235778899999999999999999864 3 699999986 777777653332211111111 111236799
Q ss_pred EEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCcee----eEEECCCCCeeEeecC
Q 010206 406 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR----RQVQTPSRPSRPLGSL 462 (515)
Q Consensus 406 ~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s~~~ 462 (515)
+|+||+++|+||+.|++|++||++++ ..+.++++|..+|. .++++|++..+++++.
T Consensus 296 ~fspd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T d1sq9a_ 296 SFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355 (393)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred ccCCCCCeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence 99999999999999999999999988 56689999998886 4789999888876653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=4.6e-30 Score=237.49 Aligned_cols=324 Identities=12% Similarity=0.144 Sum_probs=224.1
Q ss_pred eecccCCCcccccccccccce-eEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 94 TEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~-v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
.++++|. .. |+|++| + +++|++|+.|++|++||+.+++.......+ .+.|.
T Consensus 6 ~tL~GH~------------~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H--------~~~V~---- 57 (355)
T d1nexb2 6 TTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW---- 57 (355)
T ss_dssp EEEECCS------------SSCEEEEEE--E--TTEEEEEETTTEEEEEETTTTEEEEEEECC--------SSCEE----
T ss_pred EEECCcC------------CCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCCcEEEEEECC--------CCCEE----
Confidence 5688997 55 567766 3 469999999999999999999877766544 34455
Q ss_pred cCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe
Q 010206 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 252 (515)
Q Consensus 173 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 252 (515)
+++|+|++ .+ ++++.|+.+++|+ ....... .......+........+.+++..++++
T Consensus 58 ---~l~~s~~~-~l------------~s~s~D~~i~iw~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (355)
T d1nexb2 58 ---ALKYAHGG-IL------------VSGSTDRTVRVWD--IKKGCCT-----HVFEGHNSTVRCLDIVEYKNIKYIVTG 114 (355)
T ss_dssp ---EEEEETTT-EE------------EEEETTCCEEEEE--TTTTEEE-----EEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred ---EEEEcCCC-EE------------EEEeccccccccc--ccccccc-----cccccccccccccccccccccceeeee
Confidence 78898865 55 8999999999999 3332211 111112334445567788899999998
Q ss_pred -CCCcEEEEeCCCCCcccceecccC---------------ccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 253 -DDLRINLWNLEISNQSFNIVDVKP---------------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 253 -~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
.|+.|++||+++............ .....|...+. .+.+++ ++++++..|+.|++||++++
T Consensus 115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~ 191 (355)
T d1nexb2 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQM 191 (355)
T ss_dssp ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTT
T ss_pred cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--cccccc-ceeeeecccceeeeeecccc
Confidence 899999999986543221100000 01122333333 345566 79999999999999999887
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 395 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
+... . ..++...+.++.|+|++.++++++. +.|++||+.+ +..+..+.+|...
T Consensus 192 ~~~~----~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~--------- 245 (355)
T d1nexb2 192 KCLY----I------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL--------- 245 (355)
T ss_dssp EEEE----E------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------
T ss_pred ccee----e------------eeccccccccccccccceeeecccccceEEeeeccc-ccccccccccccc---------
Confidence 6421 1 2334467899999999999999765 9999999996 8888888887755
Q ss_pred CCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEE-ECCCCCeeEeecCCCeEEEecCCCC
Q 010206 396 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV-QTPSRPSRPLGSLSGVVRRVKGADN 474 (515)
Q Consensus 396 ~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~~~d~~v~l~~~~~~ 474 (515)
|.+++++ +++|++|+.||.|++||+++.. ..+..|...+..+. +++++.++++| .|+.|++++ .
T Consensus 246 ------v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd---~ 310 (355)
T d1nexb2 246 ------VGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN---L 310 (355)
T ss_dssp ------CCEEEEC--SSEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE---T
T ss_pred ------ccccccc--cceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE---C
Confidence 3477776 5799999999999999998663 34566666666664 46666666665 589999933 2
Q ss_pred CccccC-CccccccCCeeEEEEcCCCCEEEEEcCCc-EEEE
Q 010206 475 SALDAN-GNAFDFSMKLLHLAWHPSENSIACAASNS-LYMY 513 (515)
Q Consensus 475 ~~~~~~-~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~ 513 (515)
...+.. ....+|...|.+++|+|+ .++++++.|| ++||
T Consensus 311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 211222 234568889999999997 4666666555 5666
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.1e-30 Score=238.20 Aligned_cols=325 Identities=10% Similarity=0.082 Sum_probs=219.1
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.+.|++|+|+|++++||+|+.||+|+|||+.+.... ..+ ....+|.
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-------------------~~~-~~~~~h~---------- 56 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-------------------VDL-LQSLRYK---------- 56 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-------------------EEE-EEEEECS----------
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-------------------eEE-EEecCCC----------
Confidence 4579999999999999999999999999999999765431 111 2223566
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.+++|+|. ++.+|++|+.|++|++|++............... ... ...+.+++..+
T Consensus 57 --~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~---- 115 (342)
T d1yfqa_ 57 --HPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN-------LGI-------CRICKYGDDKL---- 115 (342)
T ss_dssp --SCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC-------SCE-------EEEEEETTTEE----
T ss_pred --CCEEEEEEeCC-CCCEEEEcccccceeeeecccccccccccccccc-------ccc-------ccccccccccc----
Confidence 88999999864 3458999999999999999887655443322111 000 23445555655
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeee-eccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIY-AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 268 (515)
++++.++.+++|| +........ ..... ..........+.+.+.+..++++ .|+.|++||+......
T Consensus 116 --------~~~~~~~~~~~wd--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 183 (342)
T d1yfqa_ 116 --------IAASWDGLIEVID--PRNYGDGVI--AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp --------EEEETTSEEEEEC--HHHHTTBCE--EEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC
T ss_pred --------cccccccccceee--cccccccee--eecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc
Confidence 8889999999999 433222111 11110 11223344566777888889988 8999999999876654
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEE
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 348 (515)
.... ....+...+.+..+.+.....+++++.||.+.+|++................. ........+|...+.++
T Consensus 184 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l 257 (342)
T d1yfqa_ 184 NGTI-----EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp CCEE-----EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEE
T ss_pred ceee-----eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee-eeeccCCCcccccceeE
Confidence 3321 22334555677777665548999999999999999876543322111111110 01111235577789999
Q ss_pred EEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 349 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 349 ~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
+|+|++++|++|+. |.|++||+.+ ++.+..+..+.. +..++|+|++++|++++.|+.+++|.
T Consensus 258 ~~sp~~~~lasg~~Dg~v~vWD~~~-~~~l~~~~~~~~----------------~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 258 EFSPRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNE----------------DSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSS----------------SEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred EecCCccEEEEECCCCEEEEEECCC-CcEEEEecCCCC----------------CEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 99999999999865 9999999986 666666643322 12688999999999999999888886
Q ss_pred cCCCCcceeeeccCCCcee
Q 010206 428 CSEGSAESTTLEASKNPMR 446 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~v~ 446 (515)
... ..++.|...|.
T Consensus 321 ~~~-----~~~~~~~~~i~ 334 (342)
T d1yfqa_ 321 AID-----QTIELNASSIY 334 (342)
T ss_dssp SSC-----TTSCCCCCEEE
T ss_pred eeC-----CCccCCCCeEE
Confidence 542 23444554444
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.8e-29 Score=222.95 Aligned_cols=270 Identities=13% Similarity=0.263 Sum_probs=204.0
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
.+|...|+|++| ||++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~----------- 55 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT----------- 55 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS-----------
T ss_pred CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC-----------
Confidence 468889999765 79999999999999999998766 446788898
Q ss_pred cceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccc
Q 010206 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~ 191 (515)
..|++++| + +++|++++.|+.|++|++..+.........
T Consensus 56 -~~V~~v~~--~--~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~------------------------------------ 94 (293)
T d1p22a2 56 -GSVLCLQY--D--ERVIITGSSDSTVRVWDVNTGEMLNTLIHH------------------------------------ 94 (293)
T ss_dssp -SCEEEEEC--C--SSEEEEEETTSCEEEEESSSCCEEEEECCC------------------------------------
T ss_pred -CCEeeeec--c--cceeeccccccccccccccccccccccccc------------------------------------
Confidence 88999988 3 469999999999999999887643332111
Q ss_pred cCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccc
Q 010206 192 CASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 270 (515)
.. ....+.+....++++ .++.+.+||.........
T Consensus 95 ------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T d1p22a2 95 ------------------------------------------CE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130 (293)
T ss_dssp ------------------------------------------CS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE
T ss_pred ------------------------------------------cc--ccccccccccceeecccccceeEeeccccccccc
Confidence 01 112233445566666 899999999987654432
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
.. .+..|...+..+.+.+ ..+++++.|+.|++||+++++... . +.++...+..+.+
T Consensus 131 ~~-----~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~----~------------~~~~~~~v~~~~~ 186 (293)
T d1p22a2 131 RR-----VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVR----T------------LNGHKRGIACLQY 186 (293)
T ss_dssp EE-----EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEE----E------------EECCSSCEEEEEE
T ss_pred cc-----cccccccccccceecc---cccccccCCCceeeecCCCCcEEE----E------------EcccccccccccC
Confidence 22 4456788888888775 467889999999999998876532 2 3344466777766
Q ss_pred ccCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 351 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 351 s~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+ +.+++++. |+.|++||+++ ...+..+..+... ...+++++.+|++|+.||.|++||+.
T Consensus 187 ~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~sg~~dg~i~iwd~~ 246 (293)
T d1p22a2 187 R--DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL-----------------VRCIRFDNKRIVSGAYDGKIKVWDLV 246 (293)
T ss_dssp E--TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC-----------------EEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred C--CCeEEEecCCCEEEEEeccc-ceeeeeeccccee-----------------eeeccccceEEEEEcCCCEEEEEECC
Confidence 5 56788865 59999999986 7777777665543 34577889999999999999999975
Q ss_pred CC--------CcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 430 EG--------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 430 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
.. ......+.+|..+|.+++++ +.+|++++.||+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~i 291 (293)
T d1p22a2 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILI 291 (293)
T ss_dssp HHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEE
T ss_pred CCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEE
Confidence 42 12346788999999999984 568999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.7e-30 Score=233.01 Aligned_cols=293 Identities=10% Similarity=0.029 Sum_probs=205.4
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCC-eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeec--CCCccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN 189 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~g~~l~~~ 189 (515)
..+++++|+| ++..|+.++.+. .|+.|+....+......+..+. ...+. .++|+| +|.++
T Consensus 18 ~~~t~l~~~~--~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~-----~~~v~-------~v~fsP~~~g~~l--- 80 (325)
T d1pgua1 18 NFTTHLSYDP--TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVT-------TVKFSPIKGSQYL--- 80 (325)
T ss_dssp TCCCCCEEET--TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-----TSCEE-------EEEECSSTTCCEE---
T ss_pred CCeEEEEECC--CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCC-----CCCEE-------EEEEeeCCCCCEE---
Confidence 4578899954 566888876554 4566765544333333322211 12333 789987 55677
Q ss_pred cccCCCCCCCCCCCcccEEeeeeeeccccccccc-ceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCC
Q 010206 190 FGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVA-GCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEIS 265 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~ 265 (515)
++++.||.|++||+ ......... .........|..+|.+++|+++++.|+++ .++.+++|+.+++
T Consensus 81 ---------asgs~Dg~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (325)
T d1pgua1 81 ---------CSGDESGKVIVWGW--TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG 149 (325)
T ss_dssp ---------EEEETTSEEEEEEE--EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred ---------EEEeCCCCEEEeee--cCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc
Confidence 89999999999993 332221111 11111135788999999999999998875 3788999999876
Q ss_pred CcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 266 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
+... .+.+|...|.+++|+|+++.++++++.|+.+++||++..+.... + .....|...|
T Consensus 150 ~~~~--------~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~----~---------~~~~~~~~~v 208 (325)
T d1pgua1 150 NSLG--------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS----D---------RTHHKQGSFV 208 (325)
T ss_dssp CEEE--------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE----E---------CSSSCTTCCE
T ss_pred ccce--------eeeecccccccccccccccceEEEeeccccccccccccccccee----c---------ccccCCCCcc
Confidence 5432 55779999999999999856788999999999999987653211 1 1134566889
Q ss_pred eEEEEccC-CCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcE
Q 010206 346 SDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 423 (515)
Q Consensus 346 ~~~~~s~~-~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i 423 (515)
.+++|+|+ +.++++++ |+.|++||+++ ++.+..+.+|...... .+++++| |+|++|++++.|+.|
T Consensus 209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~-----------~~~s~~~-~dg~~l~s~s~D~~i 275 (325)
T d1pgua1 209 RDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQG-----------GIFALSW-LDSQKFATVGADATI 275 (325)
T ss_dssp EEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCS-----------CEEEEEE-SSSSEEEEEETTSEE
T ss_pred EEeeeccccceeccccccccceeeeeecc-cccccccccccccccc-----------ceeeeec-cCCCEEEEEeCCCeE
Confidence 99999996 67888876 59999999986 8888888877654220 0123333 689999999999999
Q ss_pred EEEecCCCCcceeeeccCCCc--eeeEEECCC-CCeeEeecCCCeEEE
Q 010206 424 RVFGCSEGSAESTTLEASKNP--MRRQVQTPS-RPSRPLGSLSGVVRR 468 (515)
Q Consensus 424 ~iw~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~~~l~s~~~d~~v~l 468 (515)
+|||++++ ..+..+..|... +..+++.+. ..+|++++.||.|++
T Consensus 276 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 276 RVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp EEEETTTT-EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred EEEECCCC-CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 99999987 444555555443 444454433 357899999999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-30 Score=232.56 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=197.0
Q ss_pred ccccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccc
Q 010206 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (515)
Q Consensus 31 ~~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (515)
..+|.++|++++|+| |++|+.||+|++||+.++ ..+|.
T Consensus 9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------------~~~h~---------- 46 (287)
T d1pgua2 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------------HQDHS---------- 46 (287)
T ss_dssp ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------------ECCCC----------
T ss_pred ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------------CCCCC----------
Confidence 458999999999987 899999999999997543 24566
Q ss_pred ccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 111 ~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..|.++.+++ +..+++++.|+++++|++...+
T Consensus 47 --~~V~~~~~~~---~~~~~s~s~D~~v~~w~~~~~~------------------------------------------- 78 (287)
T d1pgua2 47 --NLIVSLDNSK---AQEYSSISWDDTLKVNGITKHE------------------------------------------- 78 (287)
T ss_dssp --SCEEEEECCS---TTCCEEEETTTEEEETTEEEEE-------------------------------------------
T ss_pred --CCEEEEEecC---CCeEEEEeeccccccccccccc-------------------------------------------
Confidence 7799999843 3478999999999999865421
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
....+.++++++++..++++.++.+.+|+..+.+....
T Consensus 79 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (287)
T d1pgua2 79 ------------------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116 (287)
T ss_dssp ------------------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ------------------------------------------cccceeeeeeccCCceEEEeecccceeeeccceeeeee
Confidence 11234567788888888888777889999876654321
Q ss_pred eecccCccccccCCceEEEEEecCCCcEEEEEecC-CeEEEEecCcccccccccceeeeccCCCccccccccccceeEEE
Q 010206 271 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (515)
+. +... ..+++|++ ..+++++.+ +.+++|++........ ....|..++++++
T Consensus 117 --------~~-~~~~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~v~~~~ 169 (287)
T d1pgua2 117 --------VR-LNSP--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSFD---------------LKTPLRAKPSYIS 169 (287)
T ss_dssp --------EE-CSSC--EEEEEECS-SEEEEEETTTSCEEEEETTEEEEEEE---------------CSSCCSSCEEEEE
T ss_pred --------cc-ccce--eeeeeccC-cceeeeccccceeeeeeccccceeee---------------eeeccCCceeEEE
Confidence 11 2233 34567777 677777766 4799999876543211 1233557899999
Q ss_pred EccCCCEEEEEcC-CeEEEEEeeCCCCC-eeeEeeeccccccccccccCCCccceeeEEEcC----------CCCEEEEe
Q 010206 350 FARNGRHILSRDY-MTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----------DGGRVATG 417 (515)
Q Consensus 350 ~s~~~~~l~s~~~-~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~ 417 (515)
|+|++.+|++|+. |.|++||+.. +.. ...+..|... |.+++|+| ++.+|++|
T Consensus 170 ~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~---------------v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 170 ISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEE
T ss_pred eccCccccccccccccccceeecc-cccccccccccccc---------------cceeeecccccccccccCCCCeeEee
Confidence 9999999999875 9999999985 333 2334455443 44777776 45789999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+.|+.|++||+++.......+.+|...|++++|+|++ .|++++.|+.|++
T Consensus 234 s~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i 283 (287)
T d1pgua2 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR 283 (287)
T ss_dssp ETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred cCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence 9999999999988666778889999999999999986 5889999999998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-29 Score=231.46 Aligned_cols=318 Identities=11% Similarity=0.159 Sum_probs=214.9
Q ss_pred ceeeeecccCCCcccccccccccceeEE-EEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCcc
Q 010206 90 FRYKTEFQSHEPEFDYLKSLEIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (515)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~-l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (515)
++....+++|. +.|.+ +.| + +++|++|+.||+|++||+.+++.......+ .+.|.
T Consensus 6 ~~~~~~l~GH~------------~~V~s~~~~--~--g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h--------~~~V~ 61 (342)
T d2ovrb2 6 LKSPKVLKGHD------------DHVITCLQF--C--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGH--------TGGVW 61 (342)
T ss_dssp CCCCEEEECST------------TSCEEEEEE--E--TTEEEEEETTSCEEEEETTTCCEEEECCCC--------SSCEE
T ss_pred CCcCEEECCcC------------CceEEEEEE--C--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC--------CCCEE
Confidence 34556788998 77754 444 3 569999999999999999999876655433 23344
Q ss_pred CCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCE
Q 010206 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 248 (515)
Q Consensus 169 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (515)
++.++++ .+ ++++.|+.+++|+ ...... . .....+...+..... ....
T Consensus 62 -------~v~~~~~--~l------------~s~s~D~~~~~~~--~~~~~~------~-~~~~~~~~~~~~~~~--~~~~ 109 (342)
T d2ovrb2 62 -------SSQMRDN--II------------ISGSTDRTLKVWN--AETGEC------I-HTLYGHTSTVRCMHL--HEKR 109 (342)
T ss_dssp -------EEEEETT--EE------------EEEETTSCEEEEE--TTTTEE------E-EEECCCSSCEEEEEE--ETTE
T ss_pred -------EEEeCCC--cc------------ccceecccccccc--cccccc------e-ecccccceeEeeeec--cccc
Confidence 5666653 55 8999999999999 332211 1 112333444444443 3345
Q ss_pred EEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceee
Q 010206 249 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 327 (515)
Q Consensus 249 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 327 (515)
+..+ .|+.+.+|+..+.+....+ ..+... ...+.+.. ..++.++.|+.|++||.+...... .
T Consensus 110 ~~~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~----~-- 172 (342)
T d2ovrb2 110 VVSGSRDATLRVWDIETGQCLHVL--------MGHVAA--VRCVQYDG-RRVVSGAYDFMVKVWDPETETCLH----T-- 172 (342)
T ss_dssp EEEEETTSEEEEEESSSCCEEEEE--------ECCSSC--EEEEEECS-SCEEEEETTSCEEEEEGGGTEEEE----E--
T ss_pred ccccccceeEEEeecccccceeee--------eccccc--ceeecccc-ceeeeecCCCeEEEeecccceeeE----E--
Confidence 5666 8999999999877654321 112222 22334444 688999999999999998765421 1
Q ss_pred eccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEE
Q 010206 328 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
+.+|...+.. +++++.++++++. +.|++||++. .+++..+..|... +.+++
T Consensus 173 ----------~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~---------------v~~~~ 224 (342)
T d2ovrb2 173 ----------LQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL---------------TSGME 224 (342)
T ss_dssp ----------ECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC---------------EEEEE
T ss_pred ----------EcCccccccc--ccCCCCEEEEEeCCCeEEEeeccc-ceeeeEecccccc---------------eeEEe
Confidence 3334444444 4557889999765 9999999986 7888888777654 23444
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeecc---CCCceeeEEECCCCCeeEeecCCCeEEEecC--CCCCccccC-
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDAN- 480 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~--~~~~~~~~~- 480 (515)
+ ++++|++++.||.|++||+...+.. ..+.. |...+..+.+ ++.++++|+.||.|++++- .+... ++.
T Consensus 225 ~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~-~~~~ 298 (342)
T d2ovrb2 225 L--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR-NLVT 298 (342)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE-EEEE
T ss_pred c--CCCEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE-EEec
Confidence 4 5679999999999999999876433 44443 4455555555 4569999999999999332 21111 111
Q ss_pred CccccccCCeeEEEEcCCCCEEEEEcCCc-----EEEEe
Q 010206 481 GNAFDFSMKLLHLAWHPSENSIACAASNS-----LYMYY 514 (515)
Q Consensus 481 ~~~~~~~~~i~~~~~s~~~~~la~~~~~~-----~~i~~ 514 (515)
....+|...|.+++|+|++.+||+|+.+| +.+|+
T Consensus 299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence 11234677899999999999999999887 77775
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1e-28 Score=221.58 Aligned_cols=268 Identities=9% Similarity=0.067 Sum_probs=196.0
Q ss_pred eeeeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCC
Q 010206 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (515)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (515)
+.+.++++|. .+|++++|+| |++|+.||+|++||+.++.
T Consensus 4 ~~i~~l~gH~------------~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~----------------------- 42 (287)
T d1pgua2 4 EVLKTISGHN------------KGITALTVNP------LISGSYDGRIMEWSSSSMH----------------------- 42 (287)
T ss_dssp EEEEEECCCS------------SCEEEEETTT------TEEEETTSCEEETTTTEEE-----------------------
T ss_pred ceeEEECCCC------------CceEEEEECc------EEEEeCCCeEEEEECCCCC-----------------------
Confidence 3567789998 9999999942 9999999999999975421
Q ss_pred CCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEE
Q 010206 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 250 (515)
Q Consensus 171 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (515)
.+|...|.++++++++. ++
T Consensus 43 ------------------------------------------------------------~~h~~~V~~~~~~~~~~-~~ 61 (287)
T d1pgua2 43 ------------------------------------------------------------QDHSNLIVSLDNSKAQE-YS 61 (287)
T ss_dssp ------------------------------------------------------------CCCCSCEEEEECCSTTC-CE
T ss_pred ------------------------------------------------------------CCCCCCEEEEEecCCCe-EE
Confidence 35778899999988765 45
Q ss_pred Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeec
Q 010206 251 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 329 (515)
Q Consensus 251 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 329 (515)
++ .|+++++|++...+ ....+..+.+++++ ..++ .+.++.+.+|+..+++... .+..
T Consensus 62 s~s~D~~v~~w~~~~~~---------------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~----~~~~- 119 (287)
T d1pgua2 62 SISWDDTLKVNGITKHE---------------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDIIK----SVRL- 119 (287)
T ss_dssp EEETTTEEEETTEEEEE---------------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEEE----EEEC-
T ss_pred EEeeccccccccccccc---------------cccceeeeeeccCC-ceEE-Eeecccceeeeccceeeee----eccc-
Confidence 55 89999999986432 23457788899887 4554 5566778899988776432 1111
Q ss_pred cCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEee-eccccccccccccCCCccceeeEE
Q 010206 330 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC 406 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 406 (515)
.....++++++..++++. + +.+++|++.. .+....+.. +.. .+++++
T Consensus 120 --------------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---------------~v~~~~ 169 (287)
T d1pgua2 120 --------------NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRA---------------KPSYIS 169 (287)
T ss_dssp --------------SSCEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSS---------------CEEEEE
T ss_pred --------------cceeeeeeccCcceeeeccccceeeeeeccc-cceeeeeeeccCC---------------ceeEEE
Confidence 122345677777877754 4 6899999864 322222221 111 256899
Q ss_pred EcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCC----------CCeeEeecCCCeEEEecCCCCCc
Q 010206 407 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRRVKGADNSA 476 (515)
Q Consensus 407 ~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~~~d~~v~l~~~~~~~~ 476 (515)
|+|++++|++|+.||.|++||+.++......+.+|..++.+++|+|. +.++++|+.|++|++++-.+..
T Consensus 170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~- 248 (287)
T d1pgua2 170 ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM- 248 (287)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-
T ss_pred eccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-
Confidence 99999999999999999999999875555667899999999999874 4689999999999994432221
Q ss_pred cccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 477 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 477 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
+......+|...|++++|+|++.++.++.+..+.+|+
T Consensus 249 -~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 249 -KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285 (287)
T ss_dssp -CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred -eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence 1222334689999999999998766566677799997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.3e-27 Score=217.71 Aligned_cols=306 Identities=8% Similarity=0.013 Sum_probs=198.6
Q ss_pred eeecccCCCcccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCC
Q 010206 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (515)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (515)
+...++|+ +.|++|+|+| ++++|++++.||+|++||+..+........... ..+.|.
T Consensus 4 v~~~~~h~------------d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-----h~~~V~---- 60 (342)
T d1yfqa_ 4 VQIEQAPK------------DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-----YKHPLL---- 60 (342)
T ss_dssp EECSSCCS------------SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-----CSSCEE----
T ss_pred EEcCCCCC------------CCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcceEEEEecC-----CCCCEE----
Confidence 34567787 8899999965 567999999999999999986543222211100 023444
Q ss_pred cCCCceeecCCC-ccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE
Q 010206 173 SAIPKSYMANGG-CGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 251 (515)
Q Consensus 173 ~~~~~~~~~~g~-~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 251 (515)
+++|+|++. .+ ++++.|+.+++|+ ...... .......+........+.++...+++
T Consensus 61 ---~v~f~~~~~~~l------------~sg~~d~~v~~w~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
T d1yfqa_ 61 ---CCNFIDNTDLQI------------YVGTVQGEILKVD--LIGSPS------FQALTNNEANLGICRICKYGDDKLIA 117 (342)
T ss_dssp ---EEEEEESSSEEE------------EEEETTSCEEEEC--SSSSSS------EEECBSCCCCSCEEEEEEETTTEEEE
T ss_pred ---EEEEeCCCCCEE------------EEcccccceeeee--cccccc------cccccccccccccccccccccccccc
Confidence 788988754 56 8899999999999 333222 11112233344455566677788888
Q ss_pred e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeecc
Q 010206 252 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 330 (515)
Q Consensus 252 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 330 (515)
+ .++.+++||++............ .............+.+.+ ..+++++.|+.|++||++..........
T Consensus 118 ~~~~~~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~------ 188 (342)
T d1yfqa_ 118 ASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIE------ 188 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEE------
T ss_pred cccccccceeeccccccceeeeccc--ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeee------
Confidence 7 89999999987554432221100 111122334556677777 7899999999999999987654322111
Q ss_pred CCCccccccccccceeEEEEcc-CCCEEEEEcC-CeEEEEEeeCCCCCe-----eeEeeeccccccccccccCCCcccee
Q 010206 331 APGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKF 403 (515)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~-~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (515)
...+...+.+..+.+ ++..+++++. |.+.+|++....... ..+..+.. ..........+.
T Consensus 189 -------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~ 255 (342)
T d1yfqa_ 189 -------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL------NLKDTNLAYPVN 255 (342)
T ss_dssp -------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC------CTTCCSSCCCEE
T ss_pred -------ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee------ccCCCcccccce
Confidence 111223455555554 6778888764 999999987522111 11111110 011223344577
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEE
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 468 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l 468 (515)
+++|+|++++|+||+.||.|++||+++++ .+..+..+ .+...++++|+++++++++.|+.+++
T Consensus 256 ~l~~sp~~~~lasg~~Dg~v~vWD~~~~~-~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~ 318 (342)
T d1yfqa_ 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKT 318 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTE-EEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred eEEecCCccEEEEECCCCEEEEEECCCCc-EEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence 99999999999999999999999999874 33455432 34456778889999999999988776
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1e-25 Score=201.93 Aligned_cols=269 Identities=17% Similarity=0.242 Sum_probs=191.9
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccccc
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~ 192 (515)
..|+|+.| ++++|++|+.||+|++||+.+++....
T Consensus 16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~----------------------------------------- 50 (293)
T d1p22a2 16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 50 (293)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 77998776 467999999999999999987653322
Q ss_pred CCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccce
Q 010206 193 ASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 271 (515)
+.+|...|.+++| ++++|++| .|+.|++|++.........
T Consensus 51 -------------------------------------l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 51 -------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 91 (293)
T ss_dssp -------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred -------------------------------------EecCCCCEeeeec--ccceeecccccccccccccccccccccc
Confidence 3578899999887 56799998 8999999999876644321
Q ss_pred ecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 272 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
..+.. ....+.+.. ..++++..++.+++||......... ...+..|...+..+.+.
T Consensus 92 --------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~ 147 (293)
T d1p22a2 92 --------IHHCE--AVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDFD 147 (293)
T ss_dssp --------CCCCS--CEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEEE
T ss_pred --------ccccc--ccccccccc-cceeecccccceeEeeccccccccc-------------cccccccccccccceec
Confidence 11122 233344454 6889999999999999987653211 11134455778777776
Q ss_pred cCCCEEEEEc-CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+ ..+++++ ++.|++||+.+ .+++..+.++... +..+. +++.++++++.||.|++||+++
T Consensus 148 ~--~~~~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~---------------v~~~~--~~~~~l~~~~~dg~i~i~d~~~ 207 (293)
T d1p22a2 148 D--KYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQ--YRDRLVVSGSSDNTIRLWDIEC 207 (293)
T ss_dssp T--TEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEE--EETTEEEEEETTSCEEEEETTT
T ss_pred c--cccccccCCCceeeecCCC-CcEEEEEcccccc---------------ccccc--CCCCeEEEecCCCEEEEEeccc
Confidence 4 4566654 59999999986 7777777766543 22444 4567999999999999999998
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC---CCC---CccccCCccccccCCeeEEEEcCCCCEEEE
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG---ADN---SALDANGNAFDFSMKLLHLAWHPSENSIAC 504 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~---~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~la~ 504 (515)
. .......++...+.. +++++.+|++|+.||.|++++- ... ..........+|.+.|++++|+ +++|++
T Consensus 208 ~-~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s 282 (293)
T d1p22a2 208 G-ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVS 282 (293)
T ss_dssp C-CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEE
T ss_pred c-eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEE
Confidence 7 445677788877764 5567889999999999999221 111 1001112234688999999995 567898
Q ss_pred EcCCc-EEEEe
Q 010206 505 AASNS-LYMYY 514 (515)
Q Consensus 505 ~~~~~-~~i~~ 514 (515)
++.|+ +.+|+
T Consensus 283 ~s~Dg~i~iWD 293 (293)
T d1p22a2 283 SSHDDTILIWD 293 (293)
T ss_dssp CCSSSEEEEEC
T ss_pred EecCCEEEEeC
Confidence 88665 88885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.5e-27 Score=221.43 Aligned_cols=207 Identities=12% Similarity=0.056 Sum_probs=140.2
Q ss_pred CEEEEe-CCCcEEEEeCCCCCcccceecc--cCccccccCCceEEEEEecCC----CcEEEEEecCCeEEEEecCccccc
Q 010206 247 ETFISA-DDLRINLWNLEISNQSFNIVDV--KPANMEDLTEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSALC 319 (515)
Q Consensus 247 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~p~~----~~~l~~~~~dg~i~~wd~~~~~~~ 319 (515)
.+++++ .|+.|++|++............ .......+...+..++|.++. ..++++++.||.+++|++......
T Consensus 80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~ 159 (393)
T d1sq9a_ 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence 455666 7999999998765543322211 111223356678888888753 157899999999999998643211
Q ss_pred cc-----ccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 320 DT-----HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 320 ~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.. ......... .......+...+.+++|+|++ +|++|+. ++|+|||+.+ ++++..+.......
T Consensus 160 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~------ 228 (393)
T d1sq9a_ 160 SNSLTLNWSPTLELQG---TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMI------ 228 (393)
T ss_dssp HHHTTTCCCCEEEEEE---EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---------
T ss_pred cceeeeeeccceeccc---ceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc-cccccccccccccc------
Confidence 00 000000000 011123344568999999998 7888865 9999999986 66665554322111
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCc---EEEEecCCCCcceeee-------------ccCCCceeeEEECCCCCee
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTL-------------EASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~---i~iw~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l 457 (515)
..-..|.+++|+|||++|++|+.|++ |++||++++... ..+ .+|...|++++|+|++++|
T Consensus 229 ---~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~-~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l 304 (393)
T d1sq9a_ 229 ---NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304 (393)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ---cccceEEEcccccccceeeeecCCCCcceeeecccccceee-eeeccccccccceeeeecccCceeeeccCCCCCee
Confidence 01112669999999999999998874 899999987432 333 4899999999999999999
Q ss_pred EeecCCCeEEE
Q 010206 458 PLGSLSGVVRR 468 (515)
Q Consensus 458 ~s~~~d~~v~l 468 (515)
+||+.|++|++
T Consensus 305 ~S~s~D~~v~v 315 (393)
T d1sq9a_ 305 CSAGWDGKLRF 315 (393)
T ss_dssp EEEETTSEEEE
T ss_pred EEECCCCEEEE
Confidence 99999999999
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=2.9e-27 Score=219.25 Aligned_cols=306 Identities=12% Similarity=0.113 Sum_probs=213.0
Q ss_pred EEEECC-CCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 40 ~v~~s~-~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
+-.||| ||+++|+++ +|.|++||..++... . -+|. ..|.++
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~-----------------------~--~~~~------------~~v~~~ 48 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-----------------------K--VPEP------------LRIRYV 48 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-----------------------E--CSCC------------SCEEEE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE-----------------------E--ccCC------------CCEEEE
Confidence 356999 999999986 569999999776532 1 2465 779999
Q ss_pred EEeecCCCcEEEeeeCCC--eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 119 RWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+| ++|+++|++++.+. .|++||+.+++...
T Consensus 49 ~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~---------------------------------------------- 80 (360)
T d1k32a3 49 RR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEK---------------------------------------------- 80 (360)
T ss_dssp EE--CSSSEEEEEEEETTEEEEEEEETTTCCEEE----------------------------------------------
T ss_pred EE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEE----------------------------------------------
Confidence 99 56788888876553 79999998765322
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceeccc
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 275 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 275 (515)
+..|...|.+++|+|++++|+++ .++.+++|++.+.+...
T Consensus 81 ---------------------------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~------ 121 (360)
T d1k32a3 81 ---------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV------ 121 (360)
T ss_dssp ---------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE------
T ss_pred ---------------------------------eeCCCceEEeeeecccccccceeccccccccccccccceee------
Confidence 23567889999999999999998 89999999998766432
Q ss_pred CccccccCCceEEEEEecCCCcEEEEEe----------cCCeEEEEecCcccccccccceeeeccCCCccccccccccce
Q 010206 276 PANMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 345 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (515)
.+..|...+.+++|+|++ ++|+.+. .++.+++||+.+++... +..+...+
T Consensus 122 --~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-----------------~~~~~~~~ 181 (360)
T d1k32a3 122 --IERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-----------------ATTENSHD 181 (360)
T ss_dssp --EEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-----------------CSCSSSBE
T ss_pred --eeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-----------------eccccccc
Confidence 345677888999999999 7887554 34568999998865321 22344668
Q ss_pred eEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCe-------eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 346 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPV-------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 346 ~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
..+.|+|+|++|++++. +.+.+||... .... ..+..+... +..+.|++++..++++
T Consensus 182 ~~~~~spdg~~l~~~s~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~ 245 (360)
T d1k32a3 182 YAPAFDADSKNLYYLSYRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGS---------------PNPTKLVPRSMTSEAG 245 (360)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECSSS-SCEECCSCBEEEEEESSTTC---------------CCGGGCCCGGGSCCCC
T ss_pred ccccccCCCCEEEEEeCCCceEcccccc-cceeeccccceEEEecccCc---------------cccceECCCcCccccc
Confidence 88999999999998765 8999998754 2111 111111111 1245677887777655
Q ss_pred cCCC-----cEEEEecCCCCcceeeeccCCCceeeEEECCC---CCeeEeecCCCeEEEecCCCCCccccCCccccccCC
Q 010206 418 SYSN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS---RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 489 (515)
Q Consensus 418 s~dg-----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~ 489 (515)
..+. .+..++...+ ....+..+...+..+.+.+. ..++++++.++.+++++.... +...+.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~ 316 (360)
T d1k32a3 246 EYDLNDMYKRSSPINVDPG--DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNN 316 (360)
T ss_dssp CCCCTTGGGGCEECSCCCB--CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-------CEEEEEEE
T ss_pred ceeecccccceeecccCcC--ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC-------eEEEecCC
Confidence 4432 2444444433 23345555555555555444 447889999999998332211 12235677
Q ss_pred eeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 490 LLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
|.+++|||||++|++++.|+ +.+|.+
T Consensus 317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 317 LTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred cCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 99999999999999888655 888864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.1e-25 Score=212.53 Aligned_cols=358 Identities=9% Similarity=0.028 Sum_probs=233.0
Q ss_pred CCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeec
Q 010206 44 DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (515)
Q Consensus 44 s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~ 123 (515)
+++.-++++.+.+|.|.|||..+++.+ ..+..+ ..+..++| +
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~-----------------------~~~~~g-------------~~~~~v~f--S 70 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDTG-------------YAVHISRL--S 70 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECS-------------SCEEEEEE--C
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEE-----------------------EEEeCC-------------CCeeEEEE--C
Confidence 444444688899999999999887743 445444 34899999 6
Q ss_pred CCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCC
Q 010206 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (515)
Q Consensus 124 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 203 (515)
+||+++++++.|++|++||+.+++............ ..+.+. +..|+|||+.+ ++++..
T Consensus 71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~---~~~~~~-------s~~~SpDG~~l-----------~vs~~~ 129 (432)
T d1qksa2 71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIET-------SKMEGWEDKYA-----------IAGAYW 129 (432)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEE-------CCSTTCTTTEE-----------EEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC---CCCeEE-------ecccCCCCCEE-----------EEEcCC
Confidence 688999999999999999998876433322221000 012222 56788999975 156677
Q ss_pred cccEEeeeeeecccccccccceeee----eeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc
Q 010206 204 VSSLRLPVVVVTSQETNLVAGCRRI----YAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 277 (515)
Q Consensus 204 ~~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 277 (515)
++.+++|| ....+.......... ....+......+.++|++..++.+ .++.|.+||..+.+... +.
T Consensus 130 ~~~v~i~d--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~-~~----- 201 (432)
T d1qksa2 130 PPQYVIMD--GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TT----- 201 (432)
T ss_dssp TTEEEEEE--TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EE-----
T ss_pred CCeEEEEe--CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce-EE-----
Confidence 89999999 443332111110000 012345667789999999988765 68999999987655321 11
Q ss_pred cccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCE
Q 010206 278 NMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 356 (515)
Q Consensus 278 ~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 356 (515)
. -.+...+..++|+|++ +++++++ .++.+.++|..+++.... +.... ...|........+...+..
T Consensus 202 ~-i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~~~----~~~g~-------~~~~~~~~~~~~~~~~g~~ 268 (432)
T d1qksa2 202 E-ISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLVAI----EDTGG-------QTPHPGRGANFVHPTFGPV 268 (432)
T ss_dssp E-EECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEEEE----EECSS-------SSBCCTTCEEEEETTTEEE
T ss_pred E-EcccCccccceECCCC-CEEEEeccccceEEEeecccceEEEE----eccCc-------cccccCcccceecCCCCce
Confidence 1 1245668999999999 6555554 567899999988764321 11111 1112233444455555555
Q ss_pred EEEEc--CCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 357 ILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 357 l~s~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
.++.. ++.+.+|+... .. ...+.. .+....++|++..+++++.++..++|...+..
T Consensus 269 ~~~~~lg~~~v~~~~~~~-~~----~~~~~~---------------~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-- 326 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDP-EG----HPDNAW---------------KILDSFPALGGGSLFIKTHPNSQYLYVDATLN-- 326 (432)
T ss_dssp EEEEBSSSSEEEEEECCT-TT----CTTTBT---------------SEEEEEECSCSCCCCEECCTTCSEEEEECTTC--
T ss_pred ecccccCCceEEeccccc-cc----cccccc---------------EEEEEEEcCCCCeEEEEecCCccceeecccCC--
Confidence 55543 47899998764 21 111111 13478899999999999999999999876432
Q ss_pred eeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc------CC
Q 010206 435 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA------SN 508 (515)
Q Consensus 435 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~------~~ 508 (515)
.|......+++ ||++.+++++.|+.+++++..+.. .+.++...+.+++|||||++|+++. ++
T Consensus 327 -----~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~------~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g 394 (432)
T d1qksa2 327 -----PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA------GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES 394 (432)
T ss_dssp -----SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH------TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred -----CCCCeeeEEEE-EechhhcccccCCceEeccccccc------ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCC
Confidence 23333445665 999999999999999993221111 1224667899999999999987653 34
Q ss_pred cEEEEeC
Q 010206 509 SLYMYYA 515 (515)
Q Consensus 509 ~~~i~~~ 515 (515)
.+.||++
T Consensus 395 ~i~i~D~ 401 (432)
T d1qksa2 395 ALVVVDD 401 (432)
T ss_dssp EEEEEET
T ss_pred cEEEEEC
Confidence 5888874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.94 E-value=1.3e-25 Score=212.83 Aligned_cols=335 Identities=10% Similarity=0.020 Sum_probs=212.2
Q ss_pred EEECCCCC--eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEE
Q 010206 41 IEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (515)
Q Consensus 41 v~~s~~g~--~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l 118 (515)
+.++.|.+ ++++.+.||+|+|||+.+++. +..+..| ..+..+
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~-----------------------~~~l~~g-------------~~~~~v 67 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTG-------------YAVHIS 67 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTCSE-----------------------EEEEECC-------------SSEEEE
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCC-------------CCeeEE
Confidence 34555543 567788999999999988774 3455555 348999
Q ss_pred EEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 119 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
+| ++||+++++++.|++|++||+.+++.........
T Consensus 68 af--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~------------------------------------------ 103 (426)
T d1hzua2 68 RM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI------------------------------------------ 103 (426)
T ss_dssp EE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC------------------------------------------
T ss_pred EE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC------------------------------------------
Confidence 99 6688899999999999999999887444322110
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceeccc-
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVK- 275 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~- 275 (515)
..+|...+.+++|+|||++++++ .++.+++||..+...........
T Consensus 104 -------------------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 104 -------------------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp -------------------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred -------------------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence 12455667788899999998665 69999999998765432211000
Q ss_pred --CccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 276 --PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 276 --~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
......+......+.+++++..++.+....+.+.+++........ ....++...+..+.|+|+
T Consensus 153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 217 (426)
T d1hzua2 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---------------VTSIGAAPFLADGGWDSS 217 (426)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE---------------EEEEECCSSEEEEEECTT
T ss_pred CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee---------------eEEeccCCccEeeeECCC
Confidence 001112334455666677763333333344556666554432110 011234467889999999
Q ss_pred CCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-E--EEEecCCCcEEEEec
Q 010206 354 GRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R--VATGSYSNLFRVFGC 428 (515)
Q Consensus 354 ~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~--l~s~s~dg~i~iw~~ 428 (515)
+++++++. . ..+.+++... ++.+........... .....+...+. . .++.+.|+.+.+|+.
T Consensus 218 g~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~ 283 (426)
T d1hzua2 218 HRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP-------------GRGANFVHPKYGPVWSTSHLGDGSISLIGT 283 (426)
T ss_dssp SCEEEEEETTCSEEEEEETTT-TEEEEEEECSSCCCC-------------SCCEEEEETTTEEEEEEECTTTCEEEEEEC
T ss_pred CcEEEeeeecccceeeeeccc-ccEEEEeccCCcccc-------------cceeeeecCCCCceEEeccCCCceEEEeec
Confidence 99998864 3 8899999985 666555543322211 01233333322 1 223456777777776
Q ss_pred CCCC------cceeeeccCCCceeeEEECCCCCeeE-------eecCCCeEEEecCCCCCcc-ccC-----CccccccCC
Q 010206 429 SEGS------AESTTLEASKNPMRRQVQTPSRPSRP-------LGSLSGVVRRVKGADNSAL-DAN-----GNAFDFSMK 489 (515)
Q Consensus 429 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~-------s~~~d~~v~l~~~~~~~~~-~~~-----~~~~~~~~~ 489 (515)
.... ....++++|...+..++++|++++|+ +++.|++|++++-...... ++. .....+...
T Consensus 284 ~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~r 363 (426)
T d1hzua2 284 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 363 (426)
T ss_dssp CTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCC
T ss_pred cccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCcc
Confidence 5432 34467889999999999999999999 5667899999443221100 110 012245667
Q ss_pred eeEEEEcCCCCEEEEEc------CCcEEEEeC
Q 010206 490 LLHLAWHPSENSIACAA------SNSLYMYYA 515 (515)
Q Consensus 490 i~~~~~s~~~~~la~~~------~~~~~i~~~ 515 (515)
|.+++|||||++|+++. ++.+.||.+
T Consensus 364 v~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 364 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp EEEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred EEEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 99999999999886542 334888864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=8.7e-26 Score=209.16 Aligned_cols=310 Identities=11% Similarity=0.031 Sum_probs=201.6
Q ss_pred cccccccceEEEEECCCCCeEEeecCC--CeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 30 EEVQEVDIISAIEFDKSGDHLATGDRG--GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 30 ~~~~h~~~v~~v~~s~~g~~lasg~~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
..++|...|.+++|+|||++|++++.+ ..|++||..+++. ..+..|.
T Consensus 37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------------------------~~~~~~~------- 85 (360)
T d1k32a3 37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------------------EKFEENL------- 85 (360)
T ss_dssp EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------------------EECCCCC-------
T ss_pred EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------------------------EEeeCCC-------
Confidence 346899999999999999999876644 3799999987653 2345566
Q ss_pred cccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
..|.+++| ++++++|++++.++.+++|++.+++......... ..+. .++|+|||+.+.
T Consensus 86 -----~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~spdg~~la 143 (360)
T d1k32a3 86 -----GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--------AMIT-------DFTISDNSRFIA 143 (360)
T ss_dssp -----CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------SCCC-------CEEECTTSCEEE
T ss_pred -----ceEEeeee--cccccccceeccccccccccccccceeeeeeccc--------cccc-------chhhccceeeee
Confidence 78999999 5678899999999999999999988776655442 2222 789999999873
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCC
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 266 (515)
.. .........+..++.+++|+ ....+ .. ....+...+..++|+|+|+.|+++ .++.+.+||.....
T Consensus 144 ~~--~~~~~~~~~~~~~~~~~v~d--~~~~~------~~--~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 144 YG--FPLKHGETDGYVMQAIHVYD--MEGRK------IF--AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp EE--EEECSSTTCSCCEEEEEEEE--TTTTE------EE--ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred ee--ccccccceeeccccceeeec--cccCc------ee--eecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 22 12223345677888999999 33221 11 134566778899999999999998 89999999976543
Q ss_pred cccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe-----EEEEecCcccccccccceeeeccCCCcccccccc
Q 010206 267 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS-----IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 341 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
...... .++..+..+...+..+.|+|++ ..++++..+.. +..++...+.. ..+..+
T Consensus 212 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 272 (360)
T d1k32a3 212 FSFEVV-SKPFVIPLIPGSPNPTKLVPRS-MTSEAGEYDLNDMYKRSSPINVDPGDY-----------------RMIIPL 272 (360)
T ss_dssp EECCSC-BEEEEEESSTTCCCGGGCCCGG-GSCCCCCCCCTTGGGGCEECSCCCBCE-----------------EEEEEC
T ss_pred eeeccc-cceEEEecccCccccceECCCc-CcccccceeecccccceeecccCcCce-----------------eEeeec
Confidence 221100 0001122234444445566665 44444333211 22222222111 112223
Q ss_pred ccceeEEEEccC---CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 342 IASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 342 ~~~i~~~~~s~~---~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
.+.+..+.+.+. +.+++++++ +.|++||+.+ ++ ...+..+ |.+++|||||++|+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~------------------v~~~~~SpDG~~l~~~ 332 (360)
T d1k32a3 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKNN------------------LTDLRLSADRKTVMVR 332 (360)
T ss_dssp SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEEE------------------EEEEEECTTSCEEEEE
T ss_pred CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecCC------------------cCEEEECCCCCEEEEE
Confidence 334444444443 335556655 8999999975 33 3333222 3489999999999999
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCc
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNP 444 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~ 444 (515)
+.||.|++||++.++.. .++..+..|
T Consensus 333 ~~Dg~i~v~d~~~~~~~-~~~~~d~~~ 358 (360)
T d1k32a3 333 KDDGKIYTFPLEKPEDE-RTVETDKRP 358 (360)
T ss_dssp ETTSCEEEEESSCTTSC-EECCCCSSC
T ss_pred ECCCeEEEEECCCCCcc-eEEEecccc
Confidence 99999999999987443 556555554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=1.4e-23 Score=198.69 Aligned_cols=342 Identities=8% Similarity=-0.029 Sum_probs=200.7
Q ss_pred cccccceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
+.+...+..++|||||++|++++.||.|++||+.+++... ...+....+|.
T Consensus 58 l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~------------------~~~i~~~~~~~----------- 108 (426)
T d1hzua2 58 IDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK------------------VAEIKIGIEAR----------- 108 (426)
T ss_dssp EECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE------------------EEEEECCSEEE-----------
T ss_pred EeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE------------------EEEEeCCCCCc-----------
Confidence 3334568999999999999999999999999998876420 00011122333
Q ss_pred cceeEEEEEeecCCCcEEEee-eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 112 EEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
..+.+++| ++||++++++ ..++.+++||..+++............. ...+........+..++++..+
T Consensus 109 -~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~s~d~~~~---- 177 (426)
T d1hzua2 109 -SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD----TQTYHPEPRVAAIIASHEHPEF---- 177 (426)
T ss_dssp -EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS----SCCEESCCCEEEEEECSSSSEE----
T ss_pred -ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCcc----ceeecCCCceeEEEECCCCCEE----
Confidence 44566666 5678887655 5889999999999887766554321100 0000000000023334444433
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 268 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 268 (515)
.+.....+.+.+++ ..+.. ........+...+..+.|+|++++++++ .+..+.+++..+.+..
T Consensus 178 -------~~~~~~~~~i~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~ 242 (426)
T d1hzua2 178 -------IVNVKETGKVLLVN--YKDID------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 242 (426)
T ss_dssp -------EEEETTTTEEEEEE--CSSSS------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred -------EEecCCCCeEEEEE--ecccc------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence 11222233343333 11111 1111123567788999999999998886 6888999999876544
Q ss_pred cceecccCccccccCCceEEEEEecCCCcEE--EEEecCCeEEEEecCcccccccccceeeeccCCCcccccccccccee
Q 010206 269 FNIVDVKPANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 346 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 346 (515)
... ....+........+.+.+...+ +..+.|+.+.+|+......... .+ .....+.+|...+.
T Consensus 243 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~---~~------~~~~~l~g~~~~v~ 307 (426)
T d1hzua2 243 ALV------DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AW------KKVAELQGQGGGSL 307 (426)
T ss_dssp EEE------ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTT---BT------SEEEEEECSSSCCC
T ss_pred EEe------ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccc---cc------eEeEEEecCCCcee
Confidence 221 1111222233344443331222 2334578888888766432211 00 11223567778899
Q ss_pred EEEEccCCCEEEE-------EcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-Ee
Q 010206 347 DIKFARNGRHILS-------RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TG 417 (515)
Q Consensus 347 ~~~~s~~~~~l~s-------~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~ 417 (515)
.++|+|++++|++ +.. ++|+|||+.+ ++...++..+..... ..+....++.++|||||++|+ ++
T Consensus 308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~vs~ 380 (426)
T d1hzua2 308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVWFSV 380 (426)
T ss_dssp CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEEEEE
T ss_pred EEEcCCCCceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEEEEE
Confidence 9999999999995 333 8999999986 666655543221100 001122366889999999764 32
Q ss_pred ----cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee
Q 010206 418 ----SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 457 (515)
Q Consensus 418 ----s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 457 (515)
+.+|.|+|||.++. ++...+.++. .++|+|++-
T Consensus 381 ~~~~~~~~~i~v~D~~T~-k~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 381 WNGKNDSSALVVVDDKTL-KLKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp CCCTTSCCEEEEEETTTT-EEEEEECCTT------CCSEEEEEE
T ss_pred ecCCCCCCeEEEEECCCC-eEEEEECCCC------ccCCCceEe
Confidence 46889999999987 4445565553 345666653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1.2e-22 Score=191.76 Aligned_cols=331 Identities=9% Similarity=-0.057 Sum_probs=212.7
Q ss_pred cceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccccccccee
Q 010206 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (515)
Q Consensus 36 ~~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (515)
..+..++|||||++|++++.||.|++||+.+++... ...+.....|. ..+
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~------------------~~~i~~~~~~~------------~~~ 111 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT------------------VAEIKIGSEAR------------SIE 111 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE------------------EEEEECCSEEE------------EEE
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE------------------EEEEecCCCCC------------CeE
Confidence 469999999999999999999999999998765320 00001111222 344
Q ss_pred EEEEEeecCCCcEE-EeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCC
Q 010206 116 NKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (515)
Q Consensus 116 ~~l~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~ 194 (515)
.+..| ++||++| +++..+++|++||..+++.............. ..+.+......+.++|+|+.+
T Consensus 112 ~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg~~~-------- 177 (432)
T d1qksa2 112 TSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE----QEYHPEPRVAAILASHYRPEF-------- 177 (432)
T ss_dssp ECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT----CCEESCCCEEEEEECSSSSEE--------
T ss_pred Eeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccc----eeccCCCceeEEEECCCCCEE--------
Confidence 44555 5678876 56778999999999999877765543211100 000000001145667777654
Q ss_pred CCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCccccee
Q 010206 195 NDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIV 272 (515)
Q Consensus 195 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~ 272 (515)
+++...++.+.+|+ ..+.+. .....-.+...+.+++|+|++++++++ .+..+.++|..+.+.... .
T Consensus 178 ---~vs~~~~~~i~~~d--~~~~~~------~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~-~ 245 (432)
T d1qksa2 178 ---IVNVKETGKILLVD--YTDLNN------LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-E 245 (432)
T ss_dssp ---EEEETTTTEEEEEE--TTCSSE------EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-E
T ss_pred ---EEEEccCCeEEEEE--ccCCCc------ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE-e
Confidence 25566778888888 333221 111112445678899999999988876 688999999986554322 1
Q ss_pred cccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEc
Q 010206 273 DVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 351 (515)
Q Consensus 273 ~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 351 (515)
.. .....|........+...+ ...++.. .++.|.+|+...... ..|...+....++
T Consensus 246 ~~--g~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~--------------------~~~~~~v~~~~~~ 302 (432)
T d1qksa2 246 DT--GGQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGH--------------------PDNAWKILDSFPA 302 (432)
T ss_dssp EC--SSSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTC--------------------TTTBTSEEEEEEC
T ss_pred cc--CccccccCcccceecCCCC-ceecccccCCceEEecccccccc--------------------cccccEEEEEEEc
Confidence 11 1122244444455554444 4444443 378899998755431 2344568889999
Q ss_pred cCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 352 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 352 ~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
|++..+++++. +..++|+... ... +.... .++++ ||++.|++++.|+.+++|++.+
T Consensus 303 ~~g~~~~~~s~p~~~~lw~~~~-~~~------~~~~~---------------~sv~v-pDg~~la~~s~d~~~k~w~~~~ 359 (432)
T d1qksa2 303 LGGGSLFIKTHPNSQYLYVDAT-LNP------EAEIS---------------GSVAV-FDIKAMTGDGSDPEFKTLPIAE 359 (432)
T ss_dssp SCSCCCCEECCTTCSEEEEECT-TCS------SHHHH---------------TCEEE-EEGGGCCCSSSCCCEEEECHHH
T ss_pred CCCCeEEEEecCCccceeeccc-CCC------CCCee---------------eEEEE-EechhhcccccCCceEeccccc
Confidence 99988888765 8899998764 221 22111 14555 8999999999999999999865
Q ss_pred CCcceeeeccCCCceeeEEECCCCCeeEeec-----CCCeEEEecCC
Q 010206 431 GSAESTTLEASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRVKGA 472 (515)
Q Consensus 431 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----~d~~v~l~~~~ 472 (515)
+ ..+..|...+..++|+|||++++.+. .++.|++++..
T Consensus 360 ~----~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 360 W----AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp H----HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred c----cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence 4 33446777888999999999885553 46788884433
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=2.3e-20 Score=167.56 Aligned_cols=270 Identities=13% Similarity=0.121 Sum_probs=186.8
Q ss_pred EEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcEE
Q 010206 50 LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALY 129 (515)
Q Consensus 50 lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~l 129 (515)
.++++.|++|.|||+.+++.+ .++... ..+..++| ++++++|
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g-------------~~p~~va~--spdG~~l 46 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVT-----------------------ATIPVG-------------SNPMGAVI--SPDGTKV 46 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEE-----------------------EEEECS-------------SSEEEEEE--CTTSSEE
T ss_pred EEEECCCCEEEEEECCCCeEE-----------------------EEEECC-------------CCceEEEE--eCCCCEE
Confidence 345678999999999887643 223222 34788999 5677777
Q ss_pred E-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 130 L-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 130 ~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
+ +++.++.|++||+.+++..........+ . .+.+++++..+ ++++..++.+.
T Consensus 47 ~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~---------~-------~~~~~~~~~~~-----------~~~~~~~~~~~ 99 (301)
T d1l0qa2 47 YVANAHSNDVSIIDTATNNVIATVPAGSSP---------Q-------GVAVSPDGKQV-----------YVTNMASSTLS 99 (301)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSE---------E-------EEEECTTSSEE-----------EEEETTTTEEE
T ss_pred EEEECCCCEEEEEECCCCceeeeeeccccc---------c-------ccccccccccc-----------cccccccceee
Confidence 5 5667899999999999877665543221 1 67888988865 14456677888
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
+|+ .... +.... ..+...+.++.++|++..++.+ .++.+.+|+..+...... ..+...+
T Consensus 100 ~~~--~~~~------~~~~~--~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 160 (301)
T d1l0qa2 100 VID--TTSN------TVAGT--VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT---------VSVGRSP 160 (301)
T ss_dssp EEE--TTTT------EEEEE--EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE---------EECCSSE
T ss_pred ecc--cccc------eeeee--ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeee---------cccCCCc
Confidence 888 3221 12222 2344667899999999988765 689999999987654422 1234567
Q ss_pred EEEEEecCCCcEEEEEec-CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE--c-C
Q 010206 287 TSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D-Y 362 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~--~-~ 362 (515)
..++++|++ ..+++++. ++.+.+|+........ ... +...+..++|+++++.++.+ + .
T Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~g~~~~v~~~~~~ 222 (301)
T d1l0qa2 161 KGIAVTPDG-TKVYVANFDSMSISVIDTVTNSVID----TVK-------------VEAAPSGIAVNPEGTKAYVTNVDKY 222 (301)
T ss_dssp EEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEE----EEE-------------CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred eEEEeeccc-cceeeecccccccccccccceeeee----ccc-------------ccCCcceeeccccccccccccccce
Confidence 899999998 56655555 5677788876654321 111 11346789999999988753 2 2
Q ss_pred -CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeeec
Q 010206 363 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 363 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
+.|.+||+.+ ++.+..+..+.. +..++|+|||++| ++++.|+.|++||++++ +++.+++
T Consensus 223 ~~~v~v~D~~t-~~~~~~~~~~~~----------------~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 223 FNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA 283 (301)
T ss_dssp CCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred eeeeeeeecCC-CeEEEEEcCCCC----------------EEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEEe
Confidence 7899999986 666666654332 3489999999986 57888999999999987 4444554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=3.1e-21 Score=177.07 Aligned_cols=302 Identities=7% Similarity=-0.012 Sum_probs=188.0
Q ss_pred EEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecc-cCCCcccccccccccceeEEEE
Q 010206 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 41 v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
++|++++++|++++.++.|.|||+.+++.. .++. .|. ..+.+++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~-----------------------~t~~~~~~------------~~p~~l~ 46 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVY-----------------------KSCVMPDK------------FGPGTAM 46 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEE-----------------------EEEECSSC------------CSSCEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEE-----------------------EEEEcCCC------------CCcceEE
Confidence 478999999999999999999999887642 3333 222 4578999
Q ss_pred EeecCCCcEEEe-eeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCC
Q 010206 120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (515)
Q Consensus 120 ~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 198 (515)
| ++|++++++ ++.++.|.+||+.+++............ .....+..++++|||+.+............
T Consensus 47 ~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~---------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~ 115 (346)
T d1jmxb_ 47 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG---------EVGRSMYSFAISPDGKEVYATVNPTQRLND 115 (346)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT---------EEEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred E--CCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc---------ccCCceEEEEEecCCCEEEEEecCCcceee
Confidence 9 567777755 5678999999999998776554332210 000112278999999988443222222222
Q ss_pred CCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCcc
Q 010206 199 FPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 278 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 278 (515)
.....+..+.+|+ ...... ...... ......+..+.+++++..++++ ..+.+|++.+.+....+.
T Consensus 116 ~~~~~~~~i~~~~--~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------ 180 (346)
T d1jmxb_ 116 HYVVKPPRLEVFS--TADGLE---AKPVRT--FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALP------ 180 (346)
T ss_dssp CEEECCCEEEEEE--GGGGGG---BCCSEE--EECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEEC------
T ss_pred eeccCcceEEEEe--ccccee---eeEEEe--eeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEe------
Confidence 2334566777777 222221 111111 1223345566677788766654 447889987665432211
Q ss_pred ccccCCceEEEEEecCC-------------------------CcEEEEEecCCeEEEEecCcccccccccceeeeccCCC
Q 010206 279 MEDLTEVITSAEFHPTH-------------------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 333 (515)
Q Consensus 279 ~~~~~~~i~~i~~~p~~-------------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 333 (515)
. ......+.++|++ ...++++..+..+.+||+.++....
T Consensus 181 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 244 (346)
T d1jmxb_ 181 --L-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT------------- 244 (346)
T ss_dssp --S-TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE-------------
T ss_pred --c-CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEE-------------
Confidence 0 0111122222222 1334445556667777776654321
Q ss_pred ccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCE
Q 010206 334 TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 413 (515)
Q Consensus 334 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 413 (515)
.....|...+..+.+++++.+++....+.|.+||..+ ++.+..+.... . +.+++|+|||++
T Consensus 245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~-~---------------~~~va~s~DG~~ 305 (346)
T d1jmxb_ 245 --QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDH-T---------------YYCVAFDKKGDK 305 (346)
T ss_dssp --EEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSS-C---------------CCEEEECSSSSC
T ss_pred --EEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCC-C---------------EEEEEEcCCCCE
Confidence 1123455678889999998888887778999999986 66666554322 1 348999999999
Q ss_pred EEEecCCCcEEEEecCCCCcceeeec
Q 010206 414 VATGSYSNLFRVFGCSEGSAESTTLE 439 (515)
Q Consensus 414 l~s~s~dg~i~iw~~~~~~~~~~~~~ 439 (515)
|++++.|+.|++||++++ +.+.+++
T Consensus 306 l~v~~~d~~v~v~D~~t~-~~i~~i~ 330 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPDTL-EKVKNIK 330 (346)
T ss_dssp EEEESBSSEEEEEETTTT-EEEEEEE
T ss_pred EEEEeCCCcEEEEECccC-CEEEEEE
Confidence 999999999999999987 3444444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=2.4e-20 Score=170.35 Aligned_cols=300 Identities=7% Similarity=0.043 Sum_probs=181.7
Q ss_pred CeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCc
Q 010206 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (515)
Q Consensus 48 ~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 127 (515)
+||++++.|++|.|||+.+.+.. .++..+.. ...+.+++| ++||+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~-----------------------~~i~~~~~----------~~~~~~i~~--spDg~ 46 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVD-----------------------KVITIADA----------GPTPMVPMV--APGGR 46 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEE-----------------------EEEECTTC----------TTCCCCEEE--CTTSS
T ss_pred eEEEEEcCCCEEEEEECCCCeEE-----------------------EEEECCCC----------CCCccEEEE--CCCCC
Confidence 58999999999999999877643 33332210 044788999 56777
Q ss_pred EEE-eeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCccc
Q 010206 128 LYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (515)
Q Consensus 128 ~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
+++ +++.++.|.+||+.+++............. ...+..++++|+++.+.................+..
T Consensus 47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~----------~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T d1pbyb_ 47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEER----------VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE----------EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred EEEEEECCCCeEEEEECCCCcEEEEEecCCCccc----------ccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence 775 557899999999999987766554321100 011127899999998833221111111122223455
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccC--cc------
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKP--AN------ 278 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~--~~------ 278 (515)
+.+|| ... ......+ .+...+..++|+|++++++++. +.+.+||..+.+....+. ... ..
T Consensus 117 ~~~~d--~~~------~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (337)
T d1pbyb_ 117 VALYD--AET------LSRRKAF--EAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKP-IQSWEAETYAQPD 184 (337)
T ss_dssp EEEEE--TTT------TEEEEEE--ECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEEC-STTTTTTTBCCCB
T ss_pred eeecc--ccC------CeEEEec--cccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEee-cCCccccceecCC
Confidence 66666 221 1222222 3445688899999999998873 346789988765332211 000 00
Q ss_pred -c----cc-cCC--ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEE
Q 010206 279 -M----ED-LTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 350 (515)
Q Consensus 279 -~----~~-~~~--~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (515)
. .. +.. .........+. ..+..+..++.+.+||..++..... .+..+...+..+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 185 VLAVWNQHESSGVMATPFYTARKDI-DPADPTAYRTGLLTMDLETGEMAMR---------------EVRIMDVFYFSTAV 248 (337)
T ss_dssp CCCCCCCCTTTTEEEEEEEEEBTTS-CTTSGGGEEEEEEEEETTTCCEEEE---------------EEEECSSCEEEEEE
T ss_pred cceeeccccccceeeeeeeeeeecc-ceeeecccCccEEEEEcCCCcEEEE---------------EecCCCcceEEEEe
Confidence 0 00 000 01111111222 2223334455688888877653211 12234456788899
Q ss_pred ccCCCEEEEEcCCeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCC
Q 010206 351 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 430 (515)
Q Consensus 351 s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~ 430 (515)
+|++.+++.++ +.|++||+.+ ++.+..+.... . +.+++|+|||++|++++.|+.|++||.++
T Consensus 249 ~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 249 NPAKTRAFGAY-NVLESFDLEK-NASIKRVPLPH-S---------------YYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp CTTSSEEEEEE-SEEEEEETTT-TEEEEEEECSS-C---------------CCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred cccceEEEEcc-ccEEEEECCC-CcEEEEEcCCC-C---------------EEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 99999887664 7999999986 66666664322 1 34899999999999999999999999998
Q ss_pred CCcceeeec
Q 010206 431 GSAESTTLE 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
.+ .+.+++
T Consensus 311 ~~-~v~~i~ 318 (337)
T d1pbyb_ 311 LE-KKGQVD 318 (337)
T ss_dssp CC-EEEEEE
T ss_pred Cc-EEEEEE
Confidence 74 334443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.85 E-value=5.2e-19 Score=158.59 Aligned_cols=260 Identities=10% Similarity=0.133 Sum_probs=184.5
Q ss_pred EEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEE
Q 010206 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (515)
Q Consensus 129 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (515)
+++.+.|++|.+||+.+++..........+ . .++++|||+.+ ++++..++.|.
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p---------~-------~va~spdG~~l-----------~v~~~~~~~i~ 57 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNP---------M-------GAVISPDGTKV-----------YVANAHSNDVS 57 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSE---------E-------EEEECTTSSEE-----------EEEEGGGTEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCc---------e-------EEEEeCCCCEE-----------EEEECCCCEEE
Confidence 345678999999999999987776654222 1 78999999976 13556788999
Q ss_pred eeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCce
Q 010206 209 LPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 286 (515)
Q Consensus 209 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 286 (515)
+|| +.+. +....+ ..+ ..+..++|++++..++++ .++.+.+|+..+.+.... + .+...+
T Consensus 58 v~d--~~t~------~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~ 118 (301)
T d1l0qa2 58 IID--TATN------NVIATV-PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT--------V-KTGKSP 118 (301)
T ss_dssp EEE--TTTT------EEEEEE-ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------E-ECSSSE
T ss_pred EEE--CCCC------ceeeee-ecc-ccccccccccccccccccccccceeeecccccceeeee--------c-cccccc
Confidence 999 3332 222222 233 357899999999977764 689999999987654422 2 245567
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-Ce
Q 010206 287 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MT 364 (515)
Q Consensus 287 ~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~ 364 (515)
.++.|+|++..+++++..++.+.+|+..+..... .+. +...+..+.++|+++.++++. + +.
T Consensus 119 ~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (301)
T d1l0qa2 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVS-------------VGRSPKGIAVTPDGTKVYVANFDSMS 181 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEE-------------CCSSEEEEEECTTSSEEEEEETTTTE
T ss_pred eEEEeecCCCeeeeeeccccceeeeeccccceee----ecc-------------cCCCceEEEeeccccceeeecccccc
Confidence 8999999995555677778999999998876432 111 113578899999999888764 4 77
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEec---CCCcEEEEecCCCCcceeeeccC
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s---~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+.+|+... .........+.. ...++|+++++.++.++ .++.|++||+.++ .....+..+
T Consensus 182 ~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~~ 243 (301)
T d1l0qa2 182 ISVIDTVT-NSVIDTVKVEAA----------------PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPVG 243 (301)
T ss_dssp EEEEETTT-TEEEEEEECSSE----------------EEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEECC
T ss_pred cccccccc-eeeeecccccCC----------------cceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcCC
Confidence 88888764 444444433322 23789999999877553 4578999999987 344555544
Q ss_pred CCceeeEEECCCCCee-EeecCCCeEEEec
Q 010206 442 KNPMRRQVQTPSRPSR-PLGSLSGVVRRVK 470 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l-~s~~~d~~v~l~~ 470 (515)
..+..++++|+|++| ++++.|+.|++++
T Consensus 244 -~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 244 -PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 346899999999976 6888899999943
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=4.2e-18 Score=157.80 Aligned_cols=324 Identities=6% Similarity=-0.040 Sum_probs=199.3
Q ss_pred ccccceEEEEECCCCCeEEeec-----CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccc
Q 010206 33 QEVDIISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (515)
Q Consensus 33 ~h~~~v~~v~~s~~g~~lasg~-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (515)
.+..++.+++++|||+.+++.. ..+.|.+||..+++.. ..+..+.
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-----------------------~~~~~~~------- 67 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------- 67 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-----------------------EEEeCCC-------
Confidence 5778899999999999987642 3467999998877643 3344443
Q ss_pred cccccceeEEEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCc
Q 010206 108 SLEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (515)
Q Consensus 108 ~~~~~~~v~~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (515)
...++| ++||++|++++ .++.|.+||..+++.............. ....+..+
T Consensus 68 -------~~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~--------~~~~~~~~ 130 (373)
T d2madh_ 68 -------LPNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--------VGPYSWMN 130 (373)
T ss_pred -------CccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeE--------eccCCCcE
Confidence 336888 56788888864 4678999999999876655443221100 00111267
Q ss_pred eeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEE-e-CCC
Q 010206 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS-A-DDL 255 (515)
Q Consensus 178 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~-~d~ 255 (515)
.++++++.+.. .....++.+.+|+ ..... ...+.....++.++|+++.++. . .|+
T Consensus 131 ~~s~dg~~~~v----------~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg 187 (373)
T d2madh_ 131 ANTPNNADLLF----------FQFAAGPAVGLVV--QGGSS-----------DDQLLSSPTCYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred EEEeCCCcEEE----------EEEcCCCceEEee--ccCCe-----------EEEEeccceeEEEecCCCcEEEEEcCCC
Confidence 88999987622 2234455667666 21111 1233355678899999887654 4 799
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
.+.+|+............. ............+.+.+++ .++..+.++.+.+|+......... ..+...... .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~--~ 259 (373)
T d2madh_ 188 GLAKTDHAGGAAGAGLVGA--MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDALSGG--R 259 (373)
T ss_pred eEEEEEcCCceeeEEEeee--ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--EeeccccCc--E
Confidence 9999998866543221100 0011122233455566654 566677889999999887653211 111110000 0
Q ss_pred ccccccccceeEEEEccCCCEEE----------EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 336 SFFTEIIASISDIKFARNGRHIL----------SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 336 ~~~~~~~~~i~~~~~s~~~~~l~----------s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
............+++++++..++ .... +.+.+||..+ ++.+..+..... +..
T Consensus 260 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~----------------~~~ 322 (373)
T d2madh_ 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHD----------------VDA 322 (373)
T ss_pred EeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCC----------------eeE
Confidence 00000112334455666555443 3333 7899999986 666666543221 348
Q ss_pred EEEcCCCCE--EEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 405 CCLSGDGGR--VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 405 ~~~s~~~~~--l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
++|+|||+. +++++.|+.|++||+.++ +++.++..+....+.+++.+
T Consensus 323 ~a~spDG~~~l~vt~~~d~~v~v~D~~tg-~~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred EEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEECCCCCCCcEEEEec
Confidence 999999984 468899999999999998 55688887777777777654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=1.1e-18 Score=160.45 Aligned_cols=321 Identities=9% Similarity=-0.001 Sum_probs=193.8
Q ss_pred ceEEEEECCCCCeEEeec-----CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccc
Q 010206 37 IISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (515)
|+...+.+|||+.+++.. .++.|.+||..+++.+ .++..+.
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~-----------------------~~~~~g~----------- 48 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF----------- 48 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS-----------
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE-----------------------EEEECCC-----------
Confidence 444556789999987653 4567999999877642 3333333
Q ss_pred cceeEEEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeec
Q 010206 112 EEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (515)
Q Consensus 112 ~~~v~~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (515)
...++| ++|+++|++++ .|+.|++||+.+++................ ..+..++|+|
T Consensus 49 ---~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~ 115 (355)
T d2bbkh_ 49 ---LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG--------TYPWMTSLTP 115 (355)
T ss_dssp ---SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS--------CCGGGEEECT
T ss_pred ---CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecC--------CCCceEEEec
Confidence 446889 56777777643 478999999999987766554432211111 1122678999
Q ss_pred CCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEE
Q 010206 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINL 259 (515)
Q Consensus 182 ~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~i 259 (515)
+|+.+.. +..+.+..+.+|+ ....+.....................+.++++++.+... .++.+.+
T Consensus 116 dg~~~~v----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~ 183 (355)
T d2bbkh_ 116 DGKTLLF----------YQFSPAPAVGVVD--LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183 (355)
T ss_dssp TSSEEEE----------EECSSSCEEEEEE--TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CCCeeEE----------ecCCCCceeeeee--cCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEE
Confidence 9998722 3345566788887 332221100000000000011233456677777777664 4666666
Q ss_pred EeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccccc
Q 010206 260 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT 339 (515)
Q Consensus 260 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
++....... +...+....+.+++ ..++.++.++.+.+|++..+..... .....+... .....
T Consensus 184 ~~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~--~~~~~ 245 (355)
T d2bbkh_ 184 THTEVFHPE-------------DEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFL--PAVEALTEA--ERADG 245 (355)
T ss_dssp EECCCCSCT-------------TSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEEC--CCEESSCHH--HHHTT
T ss_pred Eecccccce-------------ecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEE--eccCCcccc--eEeee
Confidence 665543321 23334455677777 7888899999999999987753211 111100000 00000
Q ss_pred ccccceeEEEEccCCCEEEEEcC-----------CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEc
Q 010206 340 EIIASISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 408 (515)
Q Consensus 340 ~~~~~i~~~~~s~~~~~l~s~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 408 (515)
........+++++++..++.... ..|.+||..+ ++.+..+..... +.+++|+
T Consensus 246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~----------------~~~~a~s 308 (355)
T d2bbkh_ 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHE----------------IDSINVS 308 (355)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEE----------------ECEEEEC
T ss_pred eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCC----------------EEEEEEc
Confidence 11133456889999998876321 4799999986 777777654332 2389999
Q ss_pred CCCC--EEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 409 GDGG--RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 409 ~~~~--~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
|||+ ++++++.|+.|++||++++ +++.++..+......+.+.+
T Consensus 309 pDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 309 QDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp CSSSCEEEEEETTTTEEEEEETTTC-CEEEEECCCCSSCCEEECCC
T ss_pred CCCCeEEEEEECCCCEEEEEECCCC-CEEEEEeCcCCCccEEEeCC
Confidence 9998 4567788999999999998 45567766655554554443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=8.9e-19 Score=159.71 Aligned_cols=252 Identities=12% Similarity=0.073 Sum_probs=159.7
Q ss_pred CCeEEEEecCCCCEEE-Ee-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--------
Q 010206 235 YHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------- 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------- 304 (515)
..+.+++|+|||++++ ++ .++.|.+||+.+++....+.. .....+...+..++|+|++ +.++++..
T Consensus 34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~ 109 (337)
T d1pbyb_ 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL---STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTH 109 (337)
T ss_dssp TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC---CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSC
T ss_pred CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec---CCCcccccceeeEEEcCCC-cEEEEeecCCcceeee
Confidence 4466789999999875 55 689999999998765433210 0111123345678999999 77776653
Q ss_pred ----CCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeE
Q 010206 305 ----KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 305 ----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~ 380 (515)
+..+.+||..++.... .+. +...+..++|+|+|+++++++. .+.+||..+ ++....+
T Consensus 110 ~~~~~~~~~~~d~~~~~~~~----~~~-------------~~~~~~~~~~s~dg~~l~~~~~-~~~~~d~~~-~~~~~~~ 170 (337)
T d1pbyb_ 110 FEVQPTRVALYDAETLSRRK----AFE-------------APRQITMLAWARDGSKLYGLGR-DLHVMDPEA-GTLVEDK 170 (337)
T ss_dssp EEECCCEEEEEETTTTEEEE----EEE-------------CCSSCCCEEECTTSSCEEEESS-SEEEEETTT-TEEEEEE
T ss_pred ccccccceeeccccCCeEEE----ecc-------------ccCCceEEEEcCCCCEEEEEcC-Ccceeeeec-CcEEEEe
Confidence 5678888888765421 111 1245778999999999998764 577899886 5555555
Q ss_pred eeeccccccccc-----cccCC---CccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECC
Q 010206 381 QVHEHLRPKLCD-----LYEND---SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 452 (515)
Q Consensus 381 ~~~~~~~~~~~~-----~~~~~---~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~ 452 (515)
..+......... +.... ............+...+..++.++.+.+|++.++......+..+......+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (337)
T d1pbyb_ 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250 (337)
T ss_dssp CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred ecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc
Confidence 443322111000 00000 0000111122223333334455678999999988655566677788888999999
Q ss_pred CCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCc-EEEEeC
Q 010206 453 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYYA 515 (515)
Q Consensus 453 ~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~-~~i~~~ 515 (515)
++.+++.+ ++.+++++..... .. ..+.+...+.+++|+|||++|++++.++ +.+|++
T Consensus 251 ~~~~~~~~--~~~i~v~d~~~~~---~~-~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 251 AKTRAFGA--YNVLESFDLEKNA---SI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp TSSEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred cceEEEEc--cccEEEEECCCCc---EE-EEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99998776 5788873322211 11 1223467789999999999999887554 889874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.1e-17 Score=149.19 Aligned_cols=294 Identities=10% Similarity=0.059 Sum_probs=177.1
Q ss_pred eEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEEEeecCCCcE
Q 010206 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (515)
Q Consensus 49 ~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 128 (515)
.+++++.|++|+||++...... .... ...|. +.+..|+| ++||++
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l--------------------~~~~-~~~~~------------~~v~~la~--spDG~~ 50 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGAL--------------------TLTQ-VVDVP------------GQVQPMVV--SPDKRY 50 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE--------------------EEEE-EEECS------------SCCCCEEE--CTTSSE
T ss_pred EEEECCCCCcEEEEEEcCCCCe--------------------EEEE-EEcCC------------CCEeEEEE--eCCCCE
Confidence 4567788999999998754321 1111 11233 67999999 567888
Q ss_pred EEeee-CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCC-Cccc
Q 010206 129 YLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVSS 206 (515)
Q Consensus 129 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~ 206 (515)
|++++ .|+.|++|++............... . ..+..++++|||+.+ ++++ .++.
T Consensus 51 L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~-----~-------~~p~~l~~spDg~~l------------~v~~~~~~~ 106 (333)
T d1ri6a_ 51 LYVGVRPEFRVLAYRIAPDDGALTFAAESAL-----P-------GSLTHISTDHQGQFV------------FVGSYNAGN 106 (333)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEEEEEC-----S-------SCCSEEEECTTSSEE------------EEEETTTTE
T ss_pred EEEEECCCCeEEEEEEeCCCCcEEEeeeccc-----C-------CCceEEEEcCCCCEE------------eecccCCCc
Confidence 86655 5899999999865322211111000 0 111168999999988 5554 4668
Q ss_pred EEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCC
Q 010206 207 LRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 284 (515)
Q Consensus 207 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
+.+|+ ....... . ......+...+.++.++|+++.++++ .+..|.+|+............. ........
T Consensus 107 v~~~~--~~~~~~~---~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~g~ 177 (333)
T d1ri6a_ 107 VSVTR--LEDGLPV---G--VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA--EVTTVEGA 177 (333)
T ss_dssp EEEEE--EETTEEE---E--EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EEECSTTC
T ss_pred eeeec--cccccce---e--cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece--eeeeecCC
Confidence 88887 2222111 1 11124566778899999999998886 5788999998765433221100 01122345
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y- 362 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~- 362 (515)
....++|++++...+.+....+...+|+................... ..........+++++++++++... .
T Consensus 178 ~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~d~~~~~~~~~~~ 251 (333)
T d1ri6a_ 178 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE------NFSDTRWAADIHITPDGRHLYACDRTA 251 (333)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT------TCCSCCCEEEEEECTTSSEEEEEETTT
T ss_pred CccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec------CCCccccceeEEEecccCceeeecccC
Confidence 57899999998434445556778888887554322111111111000 011224567789999999888753 3
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCS 429 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~ 429 (515)
+.+.+|++..... ......+..... ....++|+|||++|+++ ..++.|.+|++.
T Consensus 252 ~~~~~~~~~~~~~-~~~~~~~~~~~~------------~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 252 SLITVFSVSEDGS-VLSKEGFQPTET------------QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp TEEEEEEECTTSC-CEEEEEEEECSS------------SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CeEEEEEEcCCCC-EEEEEEEeCCCC------------CeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 8999999986333 333332221100 02379999999987765 467899999654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=1e-18 Score=159.88 Aligned_cols=256 Identities=9% Similarity=0.099 Sum_probs=155.4
Q ss_pred CCeEEEEecCCCCEEEE-e-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe---------
Q 010206 235 YHINSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------- 303 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~--------- 303 (515)
..+.+++|+|||+++++ + .++.|.+||+.+.+....+... .....+...+..++|+||| +.+++++
T Consensus 40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~--~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~ 116 (346)
T d1jmxb_ 40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS--SVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDH 116 (346)
T ss_dssp CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC--CSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSC
T ss_pred CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc--ccccccCCceEEEEEecCC-CEEEEEecCCcceeee
Confidence 45678999999998755 5 6899999999987654322100 0111222345689999999 6666554
Q ss_pred ---cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeE
Q 010206 304 ---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF 380 (515)
Q Consensus 304 ---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~ 380 (515)
.+..+.+||..+++.... +.... ....+..+.++++++.++++ +.+.+|++.+ ++.+..+
T Consensus 117 ~~~~~~~i~~~~~~~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~ 179 (346)
T d1jmxb_ 117 YVVKPPRLEVFSTADGLEAKP----VRTFP----------MPRQVYLMRAADDGSLYVAG--PDIYKMDVKT-GKYTVAL 179 (346)
T ss_dssp EEECCCEEEEEEGGGGGGBCC----SEEEE----------CCSSCCCEEECTTSCEEEES--SSEEEECTTT-CCEEEEE
T ss_pred eccCcceEEEEecccceeeeE----EEeee----------ccCceEEEEecCCCEEEEeC--CcceEEEccC-CCEEEEE
Confidence 467788999887764321 11110 11345667778888777654 3588899875 6666666
Q ss_pred eeeccccccccc-----cccC---CCccce--eeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE
Q 010206 381 QVHEHLRPKLCD-----LYEN---DSIFDK--FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 450 (515)
Q Consensus 381 ~~~~~~~~~~~~-----~~~~---~~~~~v--~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 450 (515)
..+......... ++.. .....+ ....+.+....++++..++.+.+|++.++......+..+...+..+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (346)
T d1jmxb_ 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259 (346)
T ss_dssp CSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred ecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEE
Confidence 544322111000 0000 000000 012223344455666677889999999886665667788888899999
Q ss_pred CCCCCeeEeecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEEeC
Q 010206 451 TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYYA 515 (515)
Q Consensus 451 ~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~~~ 515 (515)
++++.++++... +.+++++..... .. ....+...+.+++|||||++|++++. +.+.+|++
T Consensus 260 ~~~~~~~~~~~~-~~v~v~d~~~~~---~~-~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 260 SPKDPNQIYGVL-NRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp CSSCTTEEEEEE-SEEEEEETTTTE---EE-EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred eCCCCEEEEecC-CeEEEEECCCCc---EE-EEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 999998887764 456763322111 11 11223467899999999999998875 45888874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4e-17 Score=148.39 Aligned_cols=253 Identities=8% Similarity=0.063 Sum_probs=157.0
Q ss_pred cCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeE
Q 010206 232 AHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSI 308 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i 308 (515)
.|...+.+++|+|||++|+++ .|+.|++|++.......... ....+...+..++|+||| ++|++++. ++.+
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~-----~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v 107 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA-----AESALPGSLTHISTDHQG-QFVFVGSYNAGNV 107 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-----EEEECSSCCSEEEECTTS-SEEEEEETTTTEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEe-----eecccCCCceEEEEcCCC-CEEeecccCCCce
Confidence 456778999999999998665 59999999998665443222 112244557789999999 77777764 7789
Q ss_pred EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 309 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 309 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
.+|+......... .. ...+...+.++.++|++++++.++. ..|.+|+.................
T Consensus 108 ~~~~~~~~~~~~~----~~----------~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (333)
T d1ri6a_ 108 SVTRLEDGLPVGV----VD----------VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT 173 (333)
T ss_dssp EEEEEETTEEEEE----EE----------EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred eeeccccccceec----cc----------ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeee
Confidence 9998766543211 11 1223356788999999999988753 889999987633322222111111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcce---eeec------cCCCceeeEEECCCCCe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAES---TTLE------ASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~---~~~~------~~~~~v~~~~~~~~~~~ 456 (515)
. .-.....++|++++.+++.. ...+...+|+........ ..+. ........+++++++++
T Consensus 174 ~----------~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 174 V----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp S----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred e----------cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 0 00112378999999987654 466778888765432221 1111 12344567889999987
Q ss_pred eEe-ecCCCeEEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc--CCcEEEEe
Q 010206 457 RPL-GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA--SNSLYMYY 514 (515)
Q Consensus 457 l~s-~~~d~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~~~~~i~~ 514 (515)
++. +..++.+.++.-..................+.+++|+|||++|++++ ++.+.+|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 654 45567777621111110000011112345678999999999998876 45688873
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=5.4e-16 Score=143.35 Aligned_cols=298 Identities=8% Similarity=-0.056 Sum_probs=183.1
Q ss_pred ceeEEEEEeecCCCcEEEee-----eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccc
Q 010206 113 EKINKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~ 187 (515)
.++..+++ +++++.+++. +.++.|.+||..+++..........+ .++|+|||+.+.
T Consensus 21 ~p~~~~a~--spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-----------------~~a~SpDG~~l~ 81 (373)
T d2madh_ 21 GPTNDEAP--GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-----------------NPVAAHSGSEFA 81 (373)
T ss_pred CCcccccc--CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-----------------cEEEcCCCCEEE
Confidence 77888998 5667777664 34567999999999877765433222 689999999983
Q ss_pred cccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcC-------CeEEEEecCCCCEEEEe---CCCcE
Q 010206 188 RNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDY-------HINSISNNSDGETFISA---DDLRI 257 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~s~---~d~~i 257 (515)
... ........+..++.+.+|| ....+. .... ..+.. ....+.|+++++.++.. .++.+
T Consensus 82 va~--~~~~~~~~~~~~~~v~v~D--~~t~~~------~~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~ 150 (373)
T d2madh_ 82 LAS--TSFSRIAKGKRTDYVEVFD--PVTFLP------IADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV 150 (373)
T ss_pred EEe--ecCCcccccccceEEEEEE--CCCCcE------EEEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCce
Confidence 321 1112233456678999999 443322 1111 11111 22457788888876654 36778
Q ss_pred EEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcccc
Q 010206 258 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 337 (515)
Q Consensus 258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
.+|+....+. ..+.....++.++|++...+++.+.|+.+.+|+...+............
T Consensus 151 ~~~~~~~~~~------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~--------- 209 (373)
T d2madh_ 151 GLVVQGGSSD------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT--------- 209 (373)
T ss_pred EEeeccCCeE------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc---------
Confidence 8888775432 2234456789999999667788999999999999887653221111110
Q ss_pred ccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeE--eeeccccccccccccCCCccceeeEEEcCCCCEE-
Q 010206 338 FTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV- 414 (515)
Q Consensus 338 ~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l- 414 (515)
.+.......+.+++++.+++.+.++.+.+|+... ....... ..+........ ... .....+++++++..+
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~d~~~~~ 282 (373)
T d2madh_ 210 -AAQNLLTQPAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKADT--WRP---GGWQQVAYLKSSDGIY 282 (373)
T ss_pred -cCccceeeeEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEeee--ecc---CcceeeEEecCCCeEE
Confidence 1111234556677777777777678999999875 3222111 11111000000 000 001235556655544
Q ss_pred ---------EEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCe--eEeecCCCeEEEec
Q 010206 415 ---------ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS--RPLGSLSGVVRRVK 470 (515)
Q Consensus 415 ---------~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~s~~~d~~v~l~~ 470 (515)
++...++.+.+||..+++.. ..+. +...+..++|+|||+. +++++.|++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~~v~~~d~~t~~~~-~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EecCCCceEEeecCCCeEEEEECCCCcEE-EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 45566788999999987433 4443 5566789999999984 57889999999933
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=1.8e-15 Score=138.69 Aligned_cols=297 Identities=8% Similarity=-0.069 Sum_probs=165.6
Q ss_pred cCCCcEEEee-----eCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCC
Q 010206 123 SANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (515)
Q Consensus 123 ~~~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 197 (515)
++++..+++. ..+++|.+||..+++..........+ .++|+|||+.+..... ....
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~-----------------~~a~SpDg~~l~v~~~--~~~~ 70 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFIAHAST--VFSR 70 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCEEEEEE--EEEE
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC-----------------ceEEcCCCCEEEEEeC--CCcc
Confidence 5677777764 34668999999999877665543222 6799999998722110 0011
Q ss_pred CCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe---CCCcEEEEeCCCCCcccceecc
Q 010206 198 SFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDV 274 (515)
Q Consensus 198 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~ 274 (515)
...+..++.|.+|| ..+.+.....................++|+++++.++.+ .+..+.+|+..+.+....+. .
T Consensus 71 ~~~g~~d~~v~v~D--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~ 147 (355)
T d2bbkh_ 71 IARGERTDYVEVFD--PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-V 147 (355)
T ss_dssp TTEEEEEEEEEEEC--TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-C
T ss_pred ccccCCCCEEEEEE--CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-c
Confidence 12244578999999 433221110000000001112234568999999988775 47889999998765432211 0
Q ss_pred cCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCC
Q 010206 275 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 354 (515)
Q Consensus 275 ~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 354 (515)
.......-......+.+++++..+++....++.+.+++...... .+...+....+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---------------------EDEFLINHPAYSQKA 206 (355)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC---------------------TTSCBCSCCEEETTT
T ss_pred CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc---------------------eecceeeeccccCCC
Confidence 00000000112234555565522222333344444444433221 112335556677777
Q ss_pred CEEEEEcC-CeEEEEEeeCCCCCe--eeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC----------C
Q 010206 355 RHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----------N 421 (515)
Q Consensus 355 ~~l~s~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d----------g 421 (515)
..++.++. +.+.+|++.. +... .....+........ ... . ....+++++++..++....+ .
T Consensus 207 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p-~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T d2bbkh_ 207 GRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAERADG-WRP-G---GWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280 (355)
T ss_dssp TEEEEEBTTSEEEEEECTT-SSCEECCCEESSCHHHHHTT-EEE-C---SSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred CeEEEecCCCeEEEEecCC-CcEEEEeccCCcccceEeee-eec-c---ceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence 77777665 9999999985 3321 11111111000000 000 0 11258999999988765433 4
Q ss_pred cEEEEecCCCCcceeeeccCCCceeeEEECCCCC--eeEeecCCCeEEEec
Q 010206 422 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVK 470 (515)
Q Consensus 422 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~v~l~~ 470 (515)
.|.+||+.+++ ....+.. ...+..++++|||+ ++++++.|+.|++++
T Consensus 281 ~v~v~d~~t~~-~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D 329 (355)
T d2bbkh_ 281 FVVVLDAKTGE-RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329 (355)
T ss_dssp EEEEEETTTCC-EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCc-EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEE
Confidence 79999999874 4445543 34578999999998 457788899999944
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=5.7e-14 Score=133.83 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=102.5
Q ss_pred EEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeEEEE
Q 010206 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (515)
Q Consensus 40 ~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~l~ 119 (515)
.+.|.+|++++.. .++.+.+||+.+++... .+ -...+..|. ..|.++.
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~----~~--------------~~~~~~~~~------------~~i~~~~ 68 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSV----FL--------------ENSTFDEFG------------HSINDYS 68 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEE----EE--------------CTTTTTTSS------------SCCCEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEE----EE--------------chhhhhhcc------------CccceeE
Confidence 5789999988875 46789999999887430 00 001244444 6799999
Q ss_pred EeecCCCcEEEeeeC---------CCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc
Q 010206 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (515)
Q Consensus 120 ~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~ 190 (515)
| ++|+++|+.++. ++.+.+||+.+++...
T Consensus 69 ~--SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~---------------------------------------- 106 (470)
T d2bgra1 69 I--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---------------------------------------- 106 (470)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------------------------------------
T ss_pred E--CCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc----------------------------------------
Confidence 9 567889888753 3445556655543211
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccc
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 270 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 270 (515)
+..+...+..+.|+|||+.++...++.+.+|+..+++....
T Consensus 107 ---------------------------------------l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 107 ---------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp ---------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred ---------------------------------------cccCCccccccccccCcceeeEeecccceEEECCCCceeee
Confidence 24556778899999999999998888999999887654322
Q ss_pred eecccCc-cc---------cccCCceEEEEEecCCCcEEEEEecCCe-EEEEec
Q 010206 271 IVDVKPA-NM---------EDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDM 313 (515)
Q Consensus 271 ~~~~~~~-~~---------~~~~~~i~~i~~~p~~~~~l~~~~~dg~-i~~wd~ 313 (515)
.....+. .+ +...+....+.|+||| +.|+....|.. +..|.+
T Consensus 148 t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred eeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence 1111000 00 1122334668899999 78887765433 554443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.58 E-value=1.6e-14 Score=131.70 Aligned_cols=232 Identities=12% Similarity=0.052 Sum_probs=137.8
Q ss_pred cCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeE-
Q 010206 232 AHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI- 308 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i- 308 (515)
.|.........+|||++|.+. .+.+|.++|+++.+.... + . -.+...+..++|+|++....+.+..+..+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i-i-----~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~ 141 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI-T-----H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIP 141 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE-E-----E-CTTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE-E-----e-cCCCCCccceEEeccCCEEEEEeccCCccc
Confidence 455566677778999999776 699999999998764321 1 1 12456789999999984333433333333
Q ss_pred -----------------EEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEE
Q 010206 309 -----------------RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWD 369 (515)
Q Consensus 309 -----------------~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd 369 (515)
..+|..+.+...+ .. -.+....+.|+|+|+++++.+. ..+..++
T Consensus 142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q----I~-------------v~~~p~~v~~spdGk~a~vt~~nse~~~~id 204 (441)
T d1qnia2 142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQ----VI-------------VDGNLDNTDADYTGKYATSTCYNSERAVDLA 204 (441)
T ss_dssp SSCSSSCCCGGGEEEEEEEEETTTCSEEEE----EE-------------ESSCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred ccCcccccccccccceEEeecCccceeeEE----Ee-------------cCCCccceEECCCCCEEEEEecCCCceEEEe
Confidence 2344444322110 00 0134677889999998887542 2222222
Q ss_pred eeC---------------------------------------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCC
Q 010206 370 INM---------------------------------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 370 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
..+ ..+.+..+.... ....+.++||
T Consensus 205 ~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk----------------sPhGv~vSPD 268 (441)
T d1qnia2 205 GTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK----------------NPHGLNTSPD 268 (441)
T ss_dssp HHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS----------------SCCCEEECTT
T ss_pred ccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC----------------CccCceECCC
Confidence 111 011111111111 1237899999
Q ss_pred CCEEE-EecCCCcEEEEecCCCCcceeeeccCCCc-------------eeeEEECCCCCeeEeecCCCeEEEec------
Q 010206 411 GGRVA-TGSYSNLFRVFGCSEGSAESTTLEASKNP-------------MRRQVQTPSRPSRPLGSLSGVVRRVK------ 470 (515)
Q Consensus 411 ~~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~~~l~s~~~d~~v~l~~------ 470 (515)
|++++ ++..+++|.+||+.+.. ..++.+..+ ....+|.++|..+.+...|..|..++
T Consensus 269 Gkyl~~~~~~~~tvsv~d~~k~~---~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~ 345 (441)
T d1qnia2 269 GKYFIANGKLSPTVSVIAIDKLD---DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK 345 (441)
T ss_dssp SCEEEEECTTSSBEEEEEGGGHH---HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH
T ss_pred CCEEEEeCCcCCcEEEEEeehhh---hHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhh
Confidence 99865 67789999999987421 111211111 22347889998899999998887721
Q ss_pred ---CCCCCc--cccC-CccccccCCeeEEEEcCCCCEEEEEc
Q 010206 471 ---GADNSA--LDAN-GNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 471 ---~~~~~~--~~~~-~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
+.+... ..+. ..+.+|...+.+.+++|||++|++++
T Consensus 346 ~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 346 HYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp HHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred hhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 111110 0011 11357888888899999999999984
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=1.5e-13 Score=126.28 Aligned_cols=309 Identities=8% Similarity=-0.036 Sum_probs=169.8
Q ss_pred cccceEEEEECCCCCeE---EeecCCCe--EEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCccccccc
Q 010206 34 EVDIISAIEFDKSGDHL---ATGDRGGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~l---asg~~dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (515)
+.++...++..++++.. +....+|. |.+||..+++.. .....+.
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~-----------------------~~~~~~~-------- 66 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTL-----------------------GHSLGAF-------- 66 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECT--------
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEE-----------------------EEEeCCC--------
Confidence 44555566778888742 23444554 666677666532 3333333
Q ss_pred ccccceeEEEEEeecCCCcEEEeee----------CCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCce
Q 010206 109 LEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (515)
Q Consensus 109 ~~~~~~v~~l~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (515)
...++| +++++.+++++ .|++|.+||..+++............... ...+..++
T Consensus 67 ------~~~~a~--spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~--------g~~p~~~a 130 (368)
T d1mdah_ 67 ------LSLAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV--------GPRVHIIG 130 (368)
T ss_dssp ------TCEEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB--------SCCTTSEE
T ss_pred ------CCcceE--CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc--------cCCccceE
Confidence 234777 56677777653 47889999999998776655432211111 11122789
Q ss_pred eecCCCccccccccCCCCCCCCC-CCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCC-CCEEEEe-CCC
Q 010206 179 YMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDL 255 (515)
Q Consensus 179 ~~~~g~~l~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-~d~ 255 (515)
|+|||+.+ +.+ ..++.+.+|| +...+. .... ..+... .+.+. ...+++. .||
T Consensus 131 ~SpDGk~l------------~va~~~~~~v~~~d--~~~~~~------~~~~-~~~~~~----~~~~~~~~~~v~~~~Dg 185 (368)
T d1mdah_ 131 NCASSACL------------LFFLFGSSAAAGLS--VPGASD------DQLT-KSASCF----HIHPGAAATHYLGSCPA 185 (368)
T ss_dssp ECTTSSCE------------EEEECSSSCEEEEE--ETTTEE------EEEE-ECSSCC----CCEEEETTEEECCCCTT
T ss_pred ECCCCCEE------------EEEeCCCCeEEEEE--CCCCcE------eEEe-eccCcc----eEccCCCceEEEEcCCC
Confidence 99999988 544 3568999999 333221 1111 111111 11111 2233333 567
Q ss_pred cEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCcc
Q 010206 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 335 (515)
Q Consensus 256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
.+.++++............ .....+...+..+.+.+++ ..+. ...+.+.++++..+..... ......... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~~--~~~~~~~~~--~ 256 (368)
T d1mdah_ 186 SLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATMK--AAIDGNESG--R 256 (368)
T ss_dssp SCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEEE--CCCCSSCTH--H
T ss_pred CEEEEEecCCceeeeeeec--ccccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEEE--eecccccce--e
Confidence 7777766544432211100 1222344445567777776 4444 3456667777665443210 000000000 0
Q ss_pred ccccccccceeEEEEccCCCEEEEEc---------C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeE
Q 010206 336 SFFTEIIASISDIKFARNGRHILSRD---------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 405 (515)
Q Consensus 336 ~~~~~~~~~i~~~~~s~~~~~l~s~~---------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 405 (515)
............+++++++..++... . ..|.+||..+ ++.+..+..... +..+
T Consensus 257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~----------------~~~~ 319 (368)
T d1mdah_ 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHD----------------SDAI 319 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEE----------------ECEE
T ss_pred eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCc----------------eeEE
Confidence 00001112345678899888776531 1 3689999987 777766654322 2389
Q ss_pred EEcCCCC-E-EEEecCCCcEEEEecCCCCcceeeeccC
Q 010206 406 CLSGDGG-R-VATGSYSNLFRVFGCSEGSAESTTLEAS 441 (515)
Q Consensus 406 ~~s~~~~-~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 441 (515)
+|+|||+ + ++++..|+.|++||..+++ .+.+++..
T Consensus 320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk-~~~~i~~g 356 (368)
T d1mdah_ 320 IAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELD 356 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCC
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEEECC
Confidence 9999997 3 4677789999999999884 44555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.44 E-value=6.6e-12 Score=114.27 Aligned_cols=112 Identities=9% Similarity=0.052 Sum_probs=75.5
Q ss_pred eeEEEEccCCCEEEEEc-C-CeEEEEEeeCCC-------CCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE
Q 010206 345 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDS-------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 415 (515)
Q Consensus 345 i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 415 (515)
...+.++|||+++++++ . ++|.+||+.+-. .....+.++... -....-.+|+++|+.+.
T Consensus 260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~------------glgplh~~fd~~g~~yt 327 (441)
T d1qnia2 260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL------------GLGPLHTTFDGRGNAYT 327 (441)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC------------CSCEEEEEECSSSEEEE
T ss_pred ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc------------ccCcccceecCCceEEE
Confidence 46799999999988754 3 999999986411 111112221111 11122468999999899
Q ss_pred EecCCCcEEEEecCCC---------Ccceeee-----ccCCCceeeEEECCCCCeeEee---cCCCeEEE
Q 010206 416 TGSYSNLFRVFGCSEG---------SAESTTL-----EASKNPMRRQVQTPSRPSRPLG---SLSGVVRR 468 (515)
Q Consensus 416 s~s~dg~i~iw~~~~~---------~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~---~~d~~v~l 468 (515)
+...|..|..|++... ......+ .+|...+....++|+|+||+++ |.|+.+-+
T Consensus 328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPV 397 (441)
T ss_dssp EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCC
T ss_pred cccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCC
Confidence 9999999999998421 1222333 4777777888899999999999 55555444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.41 E-value=7.9e-12 Score=118.70 Aligned_cols=82 Identities=6% Similarity=-0.010 Sum_probs=63.0
Q ss_pred cccccceEEEEECCCCCeEEeec---------CCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCc
Q 010206 32 VQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (515)
Q Consensus 32 ~~h~~~v~~v~~s~~g~~lasg~---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (515)
..|...|.++.|||||++||.++ .++.+.|||+.+++.. .+..|.
T Consensus 58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~------------------------~l~~~~-- 111 (470)
T d2bgra1 58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------------TEERIP-- 111 (470)
T ss_dssp TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------------CSSCCC--
T ss_pred hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc------------------------ccccCC--
Confidence 45667899999999999999874 3578899999887642 344454
Q ss_pred ccccccccccceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEe
Q 010206 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152 (515)
Q Consensus 103 ~~~~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 152 (515)
..+..+.| ++||+.++.. .++.+.+|+..+++.....
T Consensus 112 ----------~~~~~~~~--SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 112 ----------NNTQWVTW--SPVGHKLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp ----------TTEEEEEE--CSSTTCEEEE-ETTEEEEESSTTSCCEECC
T ss_pred ----------cccccccc--ccCcceeeEe-ecccceEEECCCCceeeee
Confidence 67899999 5678888885 5678999999988755543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=1.2e-11 Score=113.36 Aligned_cols=285 Identities=7% Similarity=-0.094 Sum_probs=159.8
Q ss_pred CeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeec
Q 010206 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVT 215 (515)
Q Consensus 136 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~ 215 (515)
..|.+||..+++..........+ .++++|||+.+..... .....+.+..++.|.+|| ..
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~-----------------~~a~spDg~~i~~~~~--~~~~~~~g~~d~~v~v~D--~~ 104 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS-----------------LAVAGHSGSDFALAST--SFARSAKGKRTDYVEVFD--PV 104 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC-----------------EEEECTTSSCEEEEEE--EETTTTSSSEEEEEEEEC--TT
T ss_pred ceEEEEeCCCCcEEEEEeCCCCC-----------------cceECCCCCEEEEEcc--cCccccccccCCeEEEEE--CC
Confidence 44667798898877766554332 6789999998854321 112345677889999999 33
Q ss_pred ccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEec
Q 010206 216 SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP 293 (515)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p 293 (515)
..+.....................++|+|||++|+++ .++.+.+||+.+.+....+ ..+... .+.|
T Consensus 105 t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~--------~~~~~~----~~~~ 172 (368)
T d1mdah_ 105 TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT--------KSASCF----HIHP 172 (368)
T ss_dssp TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEE--------ECSSCC----CCEE
T ss_pred CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEe--------eccCcc----eEcc
Confidence 3221110000000000111223468999999999876 5899999999876543221 111111 1223
Q ss_pred CCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCC
Q 010206 294 THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD 373 (515)
Q Consensus 294 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~ 373 (515)
.+...++..+.||.+.++++........ .... ..+..+...+..+.+.+++..+.+. .+.+.++++..
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~- 240 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAG----IVGA------QCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPA- 240 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCE----ECCC------CSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCS-
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeee----eeec------ccccccccceeecccccCcEEEEec-CCCEEEEeecC-
Confidence 3335677777888888888765542111 0000 0122233445567777777665543 35677777664
Q ss_pred CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCC---------CcEEEEecCCCCcceeeeccCCCc
Q 010206 374 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNP 444 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~d---------g~i~iw~~~~~~~~~~~~~~~~~~ 444 (515)
........................ ....+++++++..++....+ ..|.+||..+++ ....+.. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~-~~~~~~~-~~~ 315 (368)
T d1mdah_ 241 AGATMKAAIDGNESGRKADNFRSA---GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ-TSGPISN-GHD 315 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEEC---SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC-EEECCEE-EEE
T ss_pred CceEEEeecccccceeeeeeecCC---CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc-EeEEecC-CCc
Confidence 222211111100000000000000 01258899999887654322 368999999884 4444443 356
Q ss_pred eeeEEECCCCCe--eEeecCCCeEEEec
Q 010206 445 MRRQVQTPSRPS--RPLGSLSGVVRRVK 470 (515)
Q Consensus 445 v~~~~~~~~~~~--l~s~~~d~~v~l~~ 470 (515)
+..++++||++. ++++..|+.|++++
T Consensus 316 ~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 316 SDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp ECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 788999999973 56778899999943
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=4.7e-09 Score=95.13 Aligned_cols=184 Identities=8% Similarity=0.001 Sum_probs=105.9
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
..+.++.|+|+|++++++ ....|.+|+..........-. ..........+.++|+|++..+.++.-.++.|.+|+
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 457899999999998887 466788887654433221110 011123456899999999944445555689999999
Q ss_pred cCccccccc-ccceeee--ccCCCccccccccccceeEEEEccCCCEEEEEc---C----CeEEEEEeeCCCCCeeeEee
Q 010206 313 MRQSALCDT-HSKLFEE--QEAPGTRSFFTEIIASISDIKFARNGRHILSRD---Y----MTLKLWDINMDSGPVATFQV 382 (515)
Q Consensus 313 ~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~---~----~~i~iwd~~~~~~~~~~~~~ 382 (515)
+........ ....... ............+......+.++|+|++|+++. + ..|..|++...+........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence 876543211 0011100 000000111122334567889999999998752 1 34777877653332222111
Q ss_pred eccccccccccccCCCccceeeEEEcC-CCCEEEEe-cCCCcEEEEecCCC
Q 010206 383 HEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG-SYSNLFRVFGCSEG 431 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~-s~dg~i~iw~~~~~ 431 (515)
...... ... -..++++| +|++|+.+ ..++.|.+|++...
T Consensus 302 ~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 302 SPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSC-------CTT---CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eEEEcC-------CCC---ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 110000 000 12689998 89987655 57899999998644
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.16 E-value=1.6e-08 Score=89.00 Aligned_cols=239 Identities=13% Similarity=0.116 Sum_probs=144.3
Q ss_pred ceEEEEECCCCCeEEeecCCCeEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccccccccccceeE
Q 010206 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (515)
.+..++++|||+++++...+++|..|+...... .+.... ..+.
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-------------------------~~~~~~------------~~~~ 71 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-------------------------IHATVE------------GKVS 71 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-------------------------EEEECS------------SEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-------------------------EEEcCC------------CCcc
Confidence 578899999999999999999988888543221 122222 5689
Q ss_pred EEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCC
Q 010206 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (515)
Q Consensus 117 ~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 196 (515)
+++| .++++++++...++.+..|+.........
T Consensus 72 gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 104 (302)
T d2p4oa1 72 GLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVE--------------------------------------------- 104 (302)
T ss_dssp EEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEE---------------------------------------------
T ss_pred eEEE--cCCCCeEEEecCCceEEEEEeccccccee---------------------------------------------
Confidence 9999 66777888877778888777654321000
Q ss_pred CCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceec--
Q 010206 197 SSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD-- 273 (515)
Q Consensus 197 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-- 273 (515)
.+- ........+.+++.++++++++- .++.+..+|............
T Consensus 105 -----------~~~-------------------~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~ 154 (302)
T d2p4oa1 105 -----------TLL-------------------TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM 154 (302)
T ss_dssp -----------EEE-------------------ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG
T ss_pred -----------ecc-------------------ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCc
Confidence 000 01122456788899999888876 678888888775432211111
Q ss_pred ccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccC
Q 010206 274 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 353 (515)
Q Consensus 274 ~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 353 (515)
..+.........+..+.+..+ .++++.+..+.|..++......... ...+. .......++++++
T Consensus 155 ~~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-------------~~~~pdgia~d~d 218 (302)
T d2p4oa1 155 LARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGE-PEIFV-------------EQTNIDDFAFDVE 218 (302)
T ss_dssp GSCSSTTCCSCSEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCC-CEEEE-------------ESCCCSSEEEBTT
T ss_pred cceeeccCcccccccccccCC--ceeeecCCCCeEEeccccccccccc-ccccc-------------CCCCCcceEECCC
Confidence 011111222344567777653 5777778889999888765432211 11111 1134567999999
Q ss_pred CCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE---cCCCCEEEEecCC
Q 010206 354 GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL---SGDGGRVATGSYS 420 (515)
Q Consensus 354 ~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~s~s~d 420 (515)
|+++++... +.|..++.. ++........... ...++++| ++|++.|+.++..
T Consensus 219 G~l~va~~~~~~V~~i~p~--G~~~~~~~~~~~~-------------~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 219 GNLYGATHIYNSVVRIAPD--RSTTIIAQAEQGV-------------IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCEEEECBTTCCEEEECTT--CCEEEEECGGGTC-------------TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEEcCCCcEEEECCC--CCEEEEEecCCCC-------------CCceEEEEcCCCCCCCEEEEECCC
Confidence 997777654 888877654 3332222222111 12458999 6788877755443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.12 E-value=2.1e-08 Score=90.74 Aligned_cols=261 Identities=10% Similarity=-0.030 Sum_probs=137.2
Q ss_pred CcCCeEEEEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEE-EEEe--cCCeEE
Q 010206 233 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSS--SKGSIR 309 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l-~~~~--~dg~i~ 309 (515)
....+..|+++|+++.|.++..+.+..|.+........... .........+.+++++ +.+ ++.. ..+.+.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~ 110 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS------HPIGGHPRANDADTNT-RAIFLLAAKQPPYAVY 110 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE------EECCSSGGGGCTTSCC-EEEEEEECSSTTCCEE
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEee------ecCCCCcEEEEECCCC-CEEEEEEecCCCCEEE
Confidence 44556789999999999888656788887764433222110 0112234566777877 432 2222 235555
Q ss_pred EEecCcccccccccceeeeccCCCc----cccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeee
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGT----RSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH 383 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~ 383 (515)
.+.+...... ...+........ ..........+.++.|+|||+++++.+. ..|.+|+....+..... ...
T Consensus 111 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~-~~~ 186 (365)
T d1jofa_ 111 ANPFYKFAGY---GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV-GSV 186 (365)
T ss_dssp EEEESSSCCE---EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE-EEE
T ss_pred EeEccCCCCc---ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec-cce
Confidence 5443221100 000000000000 0000001124679999999999998764 78999987653332211 111
Q ss_pred ccccccccccccCCCccceeeEEEcCCCCEEEE-ecCCCcEEEEecCCCCcce-ee---ec--------------cCCCc
Q 010206 384 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSEGSAES-TT---LE--------------ASKNP 444 (515)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~s~dg~i~iw~~~~~~~~~-~~---~~--------------~~~~~ 444 (515)
.... .-.....++|+|++++++. ...+++|.+|++..++... .. +. .+...
T Consensus 187 ~~~~----------~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (365)
T d1jofa_ 187 DAPD----------PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR 256 (365)
T ss_dssp ECSS----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred eecC----------CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCC
Confidence 1000 0001237999999998754 4568899999997653221 11 10 11123
Q ss_pred eeeEEECCCCCeeEeecC--C----CeEEEecCCCC---CccccCCccccccCCeeEEEEcC-CCCEEEEEc--CCcEEE
Q 010206 445 MRRQVQTPSRPSRPLGSL--S----GVVRRVKGADN---SALDANGNAFDFSMKLLHLAWHP-SENSIACAA--SNSLYM 512 (515)
Q Consensus 445 v~~~~~~~~~~~l~s~~~--d----~~v~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~s~-~~~~la~~~--~~~~~i 512 (515)
...+.++|+|++|+++.. + +.+..++..+. .................+++++| +|++|+++. ++.+.+
T Consensus 257 ~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v 336 (365)
T d1jofa_ 257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI 336 (365)
T ss_dssp EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred ccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEE
Confidence 457889999999877642 1 12332111111 00000001111234567899998 899998875 456888
Q ss_pred Ee
Q 010206 513 YY 514 (515)
Q Consensus 513 ~~ 514 (515)
|.
T Consensus 337 ~~ 338 (365)
T d1jofa_ 337 YR 338 (365)
T ss_dssp EE
T ss_pred EE
Confidence 74
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=1.1e-08 Score=90.14 Aligned_cols=234 Identities=12% Similarity=0.040 Sum_probs=141.9
Q ss_pred CceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CC
Q 010206 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 254 (515)
Q Consensus 176 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d 254 (515)
.+++.|||+.+ ++...++.|..++ .++.. ..+......+.+++|+++|+++++. .+
T Consensus 32 ~iAv~pdG~l~------------vt~~~~~~I~~i~-----p~g~~------~~~~~~~~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 32 NLASAPDGTIF------------VTNHEVGEIVSIT-----PDGNQ------QIHATVEGKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp EEEECTTSCEE------------EEETTTTEEEEEC-----TTCCE------EEEEECSSEEEEEEECTTSCEEEEEECT
T ss_pred CEEECCCCCEE------------EEeCCCCEEEEEe-----CCCCE------EEEEcCCCCcceEEEcCCCCeEEEecCC
Confidence 67889999987 7777777777655 22211 1123455778999999999998887 77
Q ss_pred CcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCc
Q 010206 255 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 334 (515)
Q Consensus 255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
+.+..|+..........+ ...........+++.+++ +++++.+.++.+..+|...+... .+.......
T Consensus 89 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~- 156 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETL-----LTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGS-----IWLEHPMLA- 156 (302)
T ss_dssp TSCEEEEEECTTSCEEEE-----EECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEE-----EEEECGGGS-
T ss_pred ceEEEEEecccccceeec-----cccCCccccceeEEccCC-CEEeeccccccceeeeccCCcce-----eEecCCccc-
Confidence 888888775443222111 111234557899999998 88888888899988888765421 111100000
Q ss_pred cccccccccceeEEEEccCCCEEEEE-cC-CeEEEEEeeCCCCCeeeEe--eeccccccccccccCCCccceeeEEEcCC
Q 010206 335 RSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGD 410 (515)
Q Consensus 335 ~~~~~~~~~~i~~~~~s~~~~~l~s~-~~-~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 410 (515)
.............+.++ +..++.+ .. +.|..++.... ....... ..... ...++++++
T Consensus 157 ~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~---------------pdgia~d~d 218 (302)
T d2p4oa1 157 RSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFVEQTN---------------IDDFAFDVE 218 (302)
T ss_dssp CSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEEESCC---------------CSSEEEBTT
T ss_pred eeeccCccccccccccc--CCceeeecCCCCeEEecccccc-ccccccccccCCCC---------------CcceEECCC
Confidence 00011111234556655 4455554 33 88888887642 2221111 11111 127999999
Q ss_pred CCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEE---CCCCCeeEeecC
Q 010206 411 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ---TPSRPSRPLGSL 462 (515)
Q Consensus 411 ~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~ 462 (515)
|+++++...+++|..++.......+..........+.++| .+|++.|..++.
T Consensus 219 G~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 219 GNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp CCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 9988888889999999876432223334444456788999 677777655443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.11 E-value=1.5e-07 Score=81.51 Aligned_cols=158 Identities=9% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
.....+++.+++.++++. ..+.+.+++... +.. ..+ ....+......+++.+++ +++++....+.|.+||.
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~-~~~-----g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~ 185 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVL-HKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY 185 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE-EEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEET
T ss_pred cccceeccccCCcEEEEeeccceeeEeccCC-cee-ecc-----cccccccccceeeeccce-eEEeeeccccceeeeec
Confidence 456678888888877776 667788877652 222 111 112355678899999998 88888888999999997
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
... .. ..+.. .+.......|++.++|+.+++-. . +.|.+|+.. ++.+.++.......
T Consensus 186 ~G~-~~----~~~g~----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~---- 244 (279)
T d1q7fa_ 186 EGQ-YL----RQIGG----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA---- 244 (279)
T ss_dssp TCC-EE----EEESC----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS----
T ss_pred CCc-ee----eeecc----------cccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCC----
Confidence 542 21 22211 11223467899999999777743 2 579998854 67666665432211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~ 431 (515)
....+++.+||+++++ +.+++|++|.....
T Consensus 245 ---------~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 245 ---------QCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp ---------CEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ---------CEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence 1247899999986654 57899999998754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=8.3e-08 Score=82.81 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=133.1
Q ss_pred eEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCccccccccCCCCCCCCCCCcccEEeeeeeecc
Q 010206 137 TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVVTS 216 (515)
Q Consensus 137 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 216 (515)
.|.+.|........+..... .+. +.+|||||+.|... ....+.-.+|. . .
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~---------~~~-------sP~wSPDGk~IAf~-----------~~~~~~~~~~~--~-~ 69 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQ---------PLM-------SPAWSPDGSKLAYV-----------TFESGRSALVI--Q-T 69 (269)
T ss_dssp EEEEEETTSCSCEEEEEESS---------CEE-------EEEECTTSSEEEEE-----------ECTTSSCEEEE--E-E
T ss_pred EEEEEcCCCCCcEEEecCCC---------cee-------eeEECCCCCEEEEE-----------EeeccCcceee--e-e
Confidence 57777777666555544332 122 67999999998321 11222222222 1 1
Q ss_pred cccccccceeeeeeccCcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC
Q 010206 217 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 294 (515)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~ 294 (515)
.+.. .. ..+..+........|+|+++.++.. .++...++.......... .............++++
T Consensus 70 ~~~~---~~--~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 137 (269)
T d2hqsa1 70 LANG---AV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-------QVTDGRSNNTEPTWFPD 137 (269)
T ss_dssp TTTC---CE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------ECCCCSSCEEEEEECTT
T ss_pred cccC---ce--eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-------eeeeccccccccccccc
Confidence 1111 11 1124566778889999999999875 344433333322221111 12223444556667777
Q ss_pred CCcEEEEEecCCe--EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEe
Q 010206 295 HCNMLAYSSSKGS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDI 370 (515)
Q Consensus 295 ~~~~l~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~ 370 (515)
+...+++...++. |.+.++..+.... ............|+|+++.++..+ + +...+|..
T Consensus 138 ~~~~~~~~~~~g~~~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~ 200 (269)
T d2hqsa1 138 SQNLAFTSDQAGRPQVYKVNINGGAPQR-----------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 200 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCCEE-----------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred cccceecccccCCceEeeeeccccccee-----------------eecccccccccccccccceeEEEeecCCceeeeEe
Confidence 7445555555664 4444544432110 112224567788999999998754 3 66666666
Q ss_pred eCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecC---CCcEEEEecCCCCcceeeeccCCCceee
Q 010206 371 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRR 447 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 447 (515)
........... .... .....|||||++|+..+. ...|+++++..+. . ..+......+..
T Consensus 201 ~~~~~~~~~~~-~~~~---------------~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~-~~lt~~~g~~~~ 262 (269)
T d2hqsa1 201 DLATGGVQVLS-STFL---------------DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-K-ARLPATDGQVKF 262 (269)
T ss_dssp ETTTCCEEECC-CSSS---------------CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-E-EECCCSSSEEEE
T ss_pred ecccccceEee-cCcc---------------ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-E-EEEeCCCCcEEe
Confidence 64333333222 2211 236799999999875443 4578899998653 2 345555666777
Q ss_pred EEECCC
Q 010206 448 QVQTPS 453 (515)
Q Consensus 448 ~~~~~~ 453 (515)
.+|+|-
T Consensus 263 p~WSP~ 268 (269)
T d2hqsa1 263 PAWSPY 268 (269)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 788873
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=2.3e-07 Score=79.42 Aligned_cols=233 Identities=6% Similarity=-0.027 Sum_probs=138.8
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
....+++++++|..+++. ..+.+..++......... ...+ ......+++++++ +++++....+.+++++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~ 84 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAA 84 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECT
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeee
Confidence 456899999999987775 467777777654432211 1111 2345788999998 7777766666776665
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
-.+...... .. ......++++.++++++++-.. ..+..++.. +......... ..
T Consensus 85 ~~~~~~~~~----~~-------------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~--~~~~~~~~~~-~~----- 139 (260)
T d1rwia_ 85 GSNNQTVLP----FD-------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG--SKTQTVLPFT-GL----- 139 (260)
T ss_dssp TCSCCEECC----CC-------------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTT--CSSCEECCCC-SC-----
T ss_pred eccceeeee----ee-------------eeeecccccccccceeEeeccccccccccccc--cceeeeeeec-cc-----
Confidence 444322110 00 1134688999999987776544 666666654 2222222111 10
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 471 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~ 471 (515)
.....++++++++++++...++.|..++..... ..............+++.+++.++++....+.|..+..
T Consensus 140 --------~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 140 --------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp --------CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred --------CCcceeeecCCCCEeeeccccccccccccccce-eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence 012378999999988888888999999987542 22222244455678999999998888887777665221
Q ss_pred CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcC-CcEEEE
Q 010206 472 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMY 513 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-~~~~i~ 513 (515)
.......... ..-.....|+++++|+++++-.. +.+..+
T Consensus 211 ~~~~~~~~~~---~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 211 GSTTSTVLPF---TGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp TCSCCEECCC---CSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCeEEEEcc---CCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence 1111001111 11235689999999987665443 334433
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=5.4e-07 Score=83.91 Aligned_cols=149 Identities=11% Similarity=0.023 Sum_probs=74.5
Q ss_pred ceeEEEEccCCCEEEEE-c---C-CeEEEEEeeCCCCCeeeEeeecc-ccccccccccCCCccceeeEEEcCCCCEEE--
Q 010206 344 SISDIKFARNGRHILSR-D---Y-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVA-- 415 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~-~---~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-- 415 (515)
.+..+.|+|++++++.. + . ..|.++|..+ ++....+..... .+. .. -....|++||+.++
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~----~~-------~~~p~~~~dg~~~~fi 323 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLH----RQ-------NEEPVFSKDGRKFFFI 323 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCC----CC-------CCCCEECTTSCSEEEE
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEe----cc-------CCceeEccCCCeeEEE
Confidence 46788999999877763 2 2 4677788875 554443332221 110 00 01468999998533
Q ss_pred -EecCCC--cEEEEecC-----CCCcceeeeccCCCceeeE-EECCCCCee-EeecCCC----eEEE--ecCCCCCcccc
Q 010206 416 -TGSYSN--LFRVFGCS-----EGSAESTTLEASKNPMRRQ-VQTPSRPSR-PLGSLSG----VVRR--VKGADNSALDA 479 (515)
Q Consensus 416 -s~s~dg--~i~iw~~~-----~~~~~~~~~~~~~~~v~~~-~~~~~~~~l-~s~~~d~----~v~l--~~~~~~~~~~~ 479 (515)
..-.+| .++...+. ..+.....+....-.|..+ .+..+++.+ .++..++ .+.- +++.... ..
T Consensus 324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~ 401 (465)
T d1xfda1 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QC 401 (465)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BC
T ss_pred EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--ee
Confidence 222333 34443322 1112222333333444444 567766654 3444332 2322 3332221 11
Q ss_pred CCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 480 NGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 480 ~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
....+.......++.|||++++++...
T Consensus 402 lt~~~~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 402 LSCDLVENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eccccCCCCCEEEEEECCCCCEEEEEe
Confidence 111122344678999999999998544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.97 E-value=6.2e-07 Score=78.82 Aligned_cols=123 Identities=7% Similarity=0.057 Sum_probs=77.9
Q ss_pred ceEEEEEecCCC----cEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 285 VITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 285 ~i~~i~~~p~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
..+.++|+|++. .++++-+..+.|..||+........ .+.+.... .........+++..+|++.++.
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~~~--------~~~~~~pdGiavD~~GnlyVa~ 243 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVWGHIP--------GTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEECC--------CCSSCEEEEEEEBTTCCEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce-eeEEEEcc--------ccccccceeeEEecCCcEEEEE
Confidence 357899998762 2555556788899998754322111 01111100 0011235679999999987776
Q ss_pred cC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-EEEEecCCCcEEEEecCCCC
Q 010206 361 DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 361 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~s~dg~i~iw~~~~~~ 432 (515)
.. +.|.+||.+. ++....+..+... .++++|.||++ ++++.+.+|+|..+++...+
T Consensus 244 ~~~g~I~~~dp~~-g~~~~~i~~p~~~---------------~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 244 WGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp ETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred cCCCEEEEEeCCC-CEEEEEEECCCCC---------------EEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 44 8999999874 5555555543322 34899999997 45677788999988887554
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.9e-07 Score=80.44 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=119.9
Q ss_pred cCcCCeEEEEecCCCCEEEEe--C--CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC
Q 010206 232 AHDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG 306 (515)
Q Consensus 232 ~~~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg 306 (515)
.+...+.+.+|||||+.||.. . ...+.+.+....... .+..+........|+|++ ..++... .++
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~spdg-~~i~~~~~~~~ 105 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKTG 105 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTTS
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---------EEeeeecccccceecCCC-CeeeEeeecCC
Confidence 345667889999999999975 2 334666666544432 334467778899999999 5555444 344
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeec
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
...++........ ... ............+++++..++... . +...+|...........+....
T Consensus 106 ~~~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 170 (269)
T d2hqsa1 106 SLNLYVMDLASGQ-----IRQ----------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG 170 (269)
T ss_dssp SCEEEEEETTTCC-----EEE----------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSS
T ss_pred ccceeeccccccc-----cee----------eeeccccccccccccccccceecccccCCceEeeeecccccceeeeccc
Confidence 4333332221110 000 011112344556777776655532 2 4444444433222222222222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEEEEecC-CCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
.. .....|+|+++.++..+. .+...+|......... .+..+........|+|||+.|+..+..
T Consensus 171 ~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 171 SQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp SE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEE
T ss_pred cc---------------ccccccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcC
Confidence 11 236789999999886654 4444444443332232 333344556678999999998755543
Q ss_pred ---CeEEE--ecCCCCCccccCCccccccCCeeEEEEcCC
Q 010206 464 ---GVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 498 (515)
Q Consensus 464 ---~~v~l--~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 498 (515)
..+.+ +++.... .+....+.+...+|||-
T Consensus 235 ~~~~~l~~~~~dg~~~~------~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 268 (269)
T ss_dssp TTEEEEEEEETTSCCEE------ECCCSSSEEEEEEECCC
T ss_pred CCCcEEEEEECCCCCEE------EEeCCCCcEEeEEeCCC
Confidence 23333 3333322 22224567888999984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=5.2e-07 Score=77.14 Aligned_cols=154 Identities=5% Similarity=0.015 Sum_probs=97.7
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEec
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 313 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~ 313 (515)
..+.+++++++++++++- .+..+..++......... .. .......++++.|++ +++++...++.|..+|.
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-------~~-~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------PF-TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-------CC-CSCCSCCEEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred eecccccccccceeEeeccccccccccccccceeeee-------ee-cccCCcceeeecCCC-CEeeecccccccccccc
Confidence 456789999999887775 566777777654332111 11 112345789999998 78888888899999997
Q ss_pred CcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccccccc
Q 010206 314 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 392 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
....... +. .........+++.++|+++++... +.|..++... .....+....
T Consensus 169 ~~~~~~~-----~~-----------~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~~-------- 222 (260)
T d1rwia_ 169 ESNNQVV-----LP-----------FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFTG-------- 222 (260)
T ss_dssp TTCCEEE-----CC-----------CSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCCS--------
T ss_pred ccceeee-----ee-----------ccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccCC--------
Confidence 6543211 11 011134678999999988777655 7787776542 2222221111
Q ss_pred cccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecC
Q 010206 393 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 429 (515)
Q Consensus 393 ~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~ 429 (515)
+.....++++++|+++++-..+++|+.++..
T Consensus 223 ------~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 223 ------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp ------CCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred ------CCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 1112489999999988887777777665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.88 E-value=2.7e-06 Score=74.96 Aligned_cols=234 Identities=12% Similarity=0.089 Sum_probs=138.6
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec----CCeEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIR 309 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~----dg~i~ 309 (515)
..+..++|+++|+++++- ..+.|.-|+........ ...........++++++| +++++... .+.+.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~--------~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~ 110 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--------PFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIF 110 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--------EEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEE
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE--------EEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEE
Confidence 445789999999977776 78999999987554222 112234567899999998 77776543 23344
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-----CeEEEEEeeCCCCCeeeEeeec
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHE 384 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-----~~i~iwd~~~~~~~~~~~~~~~ 384 (515)
..+........ ...... -......+++.++|++.++... ..-.+|-+...++.+..+...-
T Consensus 111 ~~~~~~~~~~~----~~~~~~----------~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~ 176 (319)
T d2dg1a1 111 AATENGDNLQD----IIEDLS----------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI 176 (319)
T ss_dssp EECTTSCSCEE----EECSSS----------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE
T ss_pred EEcCCCceeee----eccCCC----------cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc
Confidence 44544433210 011000 0124678999999997776321 2223444443344444433222
Q ss_pred cccccccccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcceeeec-------cCCCceeeEEECCCCCe
Q 010206 385 HLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPS 456 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 456 (515)
.. -..++|+||++.| ++-+..++|+.|++........... ......-.+++..+|.+
T Consensus 177 ~~---------------pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l 241 (319)
T d2dg1a1 177 SV---------------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL 241 (319)
T ss_dssp SS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE
T ss_pred ce---------------eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCE
Confidence 11 1379999999865 4556788999999875433221111 11122457899999998
Q ss_pred eEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 457 RPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 457 l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
.++....+.|.+++ |..+....+.....++...+++++|.|+...+.+.+
T Consensus 242 ~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 242 YVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 88877778877732 222221122222223445678999999988777554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.85 E-value=3.8e-06 Score=73.67 Aligned_cols=234 Identities=9% Similarity=0.021 Sum_probs=136.5
Q ss_pred CCeEEEEecCCCCEEEEe-C-------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCC
Q 010206 235 YHINSISNNSDGETFISA-D-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 306 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg 306 (515)
.....++|+++|+++++. . +++|..||..+....... .+ ...........++|.+++ +.++++...+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---~~-~~~~~~g~P~Gl~~~~dg-~~l~vad~~~ 92 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---KP-EVNGYGGIPAGCQCDRDA-NQLFVADMRL 92 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---CC-EETTEECCEEEEEECSSS-SEEEEEETTT
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE---CC-ccccCCCcceeEEEeCCC-CEEEEEECCC
Confidence 446678999999988874 2 467888998765432210 00 111123346789999998 7777777777
Q ss_pred eEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCC--------------eEEEEEeeC
Q 010206 307 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM--------------TLKLWDINM 372 (515)
Q Consensus 307 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~--------------~i~iwd~~~ 372 (515)
.|..+|......... ....+... -...+.+++.++|++.++-..+ .-++|.+..
T Consensus 93 ~i~~~~~~g~~~~~~-~~~~~g~~-----------~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~ 160 (314)
T d1pjxa_ 93 GLLVVQTDGTFEEIA-KKDSEGRR-----------MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp EEEEEETTSCEEECC-SBCTTSCB-----------CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred eEEEEeCCCcEEEEE-eccccccc-----------cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee
Confidence 888888765432110 00000000 0235789999999988873211 124454443
Q ss_pred CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCC-----EEEEecCCCcEEEEecCCCCcce-----eeecc-C
Q 010206 373 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-----RVATGSYSNLFRVFGCSEGSAES-----TTLEA-S 441 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~s~dg~i~iw~~~~~~~~~-----~~~~~-~ 441 (515)
.++...... .-.. -..++|+|+++ ++++-+..+.|+.|++.....+. ..+.. .
T Consensus 161 dg~~~~~~~-~~~~---------------pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 161 DGQMIQVDT-AFQF---------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TSCEEEEEE-EESS---------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cCceeEeeC-Ccce---------------eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence 233222221 1111 12688998875 45566778899999886543332 11111 1
Q ss_pred CCceeeEEECCCCCeeEeecCCCeEEEec--CCCCCccccCCccccccCCeeEEEEcCCCCEEEEEc
Q 010206 442 KNPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 506 (515)
Q Consensus 442 ~~~v~~~~~~~~~~~l~s~~~d~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~ 506 (515)
....-.+++..+|.++++....+.|..++ +.... ..........++++|.||++.|.+.+
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEE-----EEEECCCCCEEEEEEeCCCCEEEEEE
Confidence 22345789999999877776677777732 22222 11111235788999999998776554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=3.5e-06 Score=72.64 Aligned_cols=241 Identities=11% Similarity=0.124 Sum_probs=146.5
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEE-ecCCeEEEEe
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLID 312 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~-~~dg~i~~wd 312 (515)
.....++++++++++++- ....|++||.+ ++....+-.. ..-.+.......+++.++....+++. +.++.|..++
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC--GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 99 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB--SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEeccc--CCCcccccccccccccccccccceeccCCcccccccc
Confidence 356899999999988886 78999999976 3322211000 01112233456677766642444433 3456777777
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
.. +... ..+.. ........+++.++|+++++... +.+.+++.. ++.+..+......
T Consensus 100 ~~-g~~~----~~~~~-----------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~----- 156 (279)
T d1q7fa_ 100 QY-GQFV----RKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHL----- 156 (279)
T ss_dssp TT-SCEE----EEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTC-----
T ss_pred cc-ccce----eecCC-----------CcccccceeccccCCcEEEEeeccceeeEeccC--Cceeecccccccc-----
Confidence 53 3221 11111 11235678899999988887655 777777754 5666555332211
Q ss_pred ccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeee--ccCCCceeeEEECCCCCeeEeecC-CCeEEE
Q 010206 392 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLGSL-SGVVRR 468 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~-d~~v~l 468 (515)
.....+++.++++.+++....+.|++|+... ....++ .+.......+++.++|..+++-+. ++.|.+
T Consensus 157 --------~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~ 226 (279)
T d1q7fa_ 157 --------EFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTI 226 (279)
T ss_dssp --------SSEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEE
T ss_pred --------cccceeeeccceeEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEE
Confidence 1134788999999999988999999999763 333343 345556788999999998777554 345666
Q ss_pred ecC-CCCCccccCCccccccCCeeEEEEcCCCCEEEEEcCCcEEEEe
Q 010206 469 VKG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 514 (515)
Q Consensus 469 ~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~~~~~i~~ 514 (515)
++. .+... .+.. .........+++.|||.++++...+.+.+|.
T Consensus 227 f~~~G~~~~-~~~~--~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr 270 (279)
T d1q7fa_ 227 FTQDGQLIS-ALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 270 (279)
T ss_dssp ECTTSCEEE-EEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred ECCCCCEEE-EEeC--CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence 321 11110 0100 0112356899999999877766666787773
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.78 E-value=1.4e-05 Score=70.09 Aligned_cols=156 Identities=5% Similarity=0.003 Sum_probs=89.0
Q ss_pred CCeEEEEecCCCCEEEEe-C------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCe
Q 010206 235 YHINSISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 307 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~ 307 (515)
..++.+++.++|++.++. . .+.+..++..... .. .+...-...+.++|+|++..++++-+..+.
T Consensus 130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~--------~~~~~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VT--------PIIQNISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EE--------EEEEEESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred cCCcceeEEeccceeecccccccccCcceeEEEecccce-eE--------EEeeccceeeeeeeccccceEEEecccCCc
Confidence 346678888888877764 2 1234444443221 11 111123346789999998335566667889
Q ss_pred EEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccc
Q 010206 308 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 308 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
|..||+................ ..........+++.++|++.++... +.|.+||.. ++.+.++......
T Consensus 201 I~~~d~~~~g~~~~~~~~~~~~--------~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~--G~~l~~i~~P~~~ 270 (319)
T d2dg1a1 201 LHRIALEDDGVTIQPFGATIPY--------YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRD 270 (319)
T ss_dssp EEEEEECTTSSSEEEEEEEEEE--------ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGG
T ss_pred eEEEEEcCCCceeccccceeee--------ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC--CcEEEEEeCCCcC
Confidence 9999986432111000000000 0000123567999999997777654 999999964 7777777654321
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEec
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS 418 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s 418 (515)
. .....+++++|.+++..+++.+
T Consensus 271 ~---------~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 271 E---------GHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp G---------TCSCBCCEEEECTTSCEEEEEE
T ss_pred C---------CcCceeeeEEEeCCCCEEEEEc
Confidence 1 1111245899999887776544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.46 E-value=0.00022 Score=61.46 Aligned_cols=145 Identities=11% Similarity=0.096 Sum_probs=87.4
Q ss_pred CeEEEEecCCCCEEEEe-C----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 236 HINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
.++.+.+.|+|++.++. . .+.-.+|.+..++.. . +...-.....++|++++..++++-+..+.|..
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~-~--------~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-K--------LFADISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-E--------EEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeecCCcEE-E--------EeeccCCcceeeecCCCceEEEeecccceeeE
Confidence 46677788888877764 2 234455655443211 1 11123345789999998445566667888999
Q ss_pred EecCcccccc-cccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
|++....... .....+.. ..+..+....+++..+|++.++.-. +.|..||.. ++.+..+......
T Consensus 175 ~~~d~~~~~~~~~~~~~~~---------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~-- 241 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ-- 241 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB--
T ss_pred eeecccccccccceEEEec---------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCc--
Confidence 9875322111 10111111 1112245788899999988777644 889999964 7777777654332
Q ss_pred cccccccCCCccceeeEEEc-CCCCEEE
Q 010206 389 KLCDLYENDSIFDKFECCLS-GDGGRVA 415 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~ 415 (515)
+++++|- +|.+.|+
T Consensus 242 -------------~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 242 -------------TTCPAFIGPDASRLL 256 (295)
T ss_dssp -------------EEEEEEESTTSCEEE
T ss_pred -------------eEEEEEeCCCCCEEE
Confidence 4589996 5766554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2e-06 Score=79.91 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=98.5
Q ss_pred EEecCCCCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe---------cCCeEEE
Q 010206 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---------SKGSIRL 310 (515)
Q Consensus 240 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~---------~dg~i~~ 310 (515)
..|.+++.++....+|.|.+||+.+++... +++. ..+ ....+....|+||+ +.++... ..+.+.+
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~-l~~~--~~~--~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTV-LIEG--KKI--ESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEE-EECT--TTT--TTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEE-EEcC--ccc--cccccceeEECCCC-CeEEEEEcccceeEeeccccEEE
Confidence 358888876655578899999998776432 2211 122 22356678899999 6666553 3567889
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCeEEEEEeeCCCCCeeeEe-eecccc-c
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ-VHEHLR-P 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~i~iwd~~~~~~~~~~~~-~~~~~~-~ 388 (515)
||+.++... .+... ......+....|||||+.||-..++.|.+.+... +...+... +....+ .
T Consensus 96 ~d~~~~~~~-----~l~~~---------~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 96 SKIPHGDPQ-----SLDPP---------EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp EESSSCCCE-----ECCCT---------TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEEECCCBTTTEEE
T ss_pred EEccCCcee-----eccCc---------cCCccccceeeeccCCceEEEEecceEEEEecCC-CceEEEecccCcceeec
Confidence 999887531 11110 1111346668899999999988888888888764 44333322 111100 0
Q ss_pred ccc-ccccCCCccceeeEEEcCCCCEEEEec-CCCcEEEEecC
Q 010206 389 KLC-DLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCS 429 (515)
Q Consensus 389 ~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~s-~dg~i~iw~~~ 429 (515)
... .+|+......-..+-|||||++||... ++..|..+.+.
T Consensus 161 G~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~ 203 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred cccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence 000 011111111112677999999999765 44556665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=0.00063 Score=58.41 Aligned_cols=220 Identities=13% Similarity=0.035 Sum_probs=130.2
Q ss_pred EEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 239 SISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 239 ~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
+..|++....|.-. ..+.|.-||+.+++... ......+.++++.+++ .++++ +.+ .+.++|..++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~----------~~~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg 88 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV----------HALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG 88 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE----------EECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE----------EECCCCcEEEEEecCC-CEEEE-EeC-ccEEeecccc
Confidence 45677755544443 68899999988764321 1134568899999988 66654 444 5888999887
Q ss_pred cccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----C-CeEEEEEeeCCCCCeeeEeeecccccccc
Q 010206 317 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLC 391 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
+.. .+...... .....++.+.+.|+|++.++.. . +.-.+|.+.. ++......... .
T Consensus 89 ~~~-----~l~~~~~~-------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~~~~~-~----- 149 (295)
T d2ghsa1 89 VLT-----LHAELESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADIS-I----- 149 (295)
T ss_dssp CEE-----EEECSSTT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEES-S-----
T ss_pred eee-----EEeeeecC-------CCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEEEEeeccC-C-----
Confidence 631 11111100 0113578899999999877632 1 4556777764 44333332211 1
Q ss_pred ccccCCCccceeeEEEcCCCCEE-EEecCCCcEEEEecCCCCcce-------eeeccCCCceeeEEECCCCCeeEeecCC
Q 010206 392 DLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAES-------TTLEASKNPMRRQVQTPSRPSRPLGSLS 463 (515)
Q Consensus 392 ~~~~~~~~~~v~~~~~s~~~~~l-~s~s~dg~i~iw~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~d 463 (515)
-..++|+++++.+ ++-+..+.|+.|++....... ..+.+.......+++..+|.+.++.-..
T Consensus 150 ----------~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~ 219 (295)
T d2ghsa1 150 ----------PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE 219 (295)
T ss_dssp ----------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred ----------cceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC
Confidence 1378999999865 456678899998875321111 1122334456688888998876665455
Q ss_pred CeEEEec--CCCCCccccCCccccccCCeeEEEEc-CCCCEEEEEc
Q 010206 464 GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 506 (515)
Q Consensus 464 ~~v~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~la~~~ 506 (515)
+.|..++ |.... .+.. ....+++++|- ||.+.|.+.+
T Consensus 220 g~V~~~dp~G~~~~--~i~l----P~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 220 GAVDRYDTDGNHIA--RYEV----PGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TEEEEECTTCCEEE--EEEC----SCSBEEEEEEESTTSCEEEEEE
T ss_pred CceEEecCCCcEee--EecC----CCCceEEEEEeCCCCCEEEEEE
Confidence 5555421 21111 1111 13568999996 7888777543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.23 E-value=5e-05 Score=65.08 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=62.8
Q ss_pred EecCC--CCEEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCC-----eEEEEe
Q 010206 241 SNNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----SIRLID 312 (515)
Q Consensus 241 ~~~~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg-----~i~~wd 312 (515)
..+|+ |+.++...++.|.+.|+..++.. .+..+.+.+...+||||| +.|+... .++ .|.+++
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~---------~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR---------KIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEE---------EEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEE---------EEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEE
Confidence 35788 99888776677888899866532 344566778899999999 6666543 222 366677
Q ss_pred cCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEE
Q 010206 313 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 360 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 360 (515)
..+++... +...... ............|+|+|+.|+..
T Consensus 75 ~~~g~~~~--lt~~~~~--------~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 75 GENGEIKR--ITYFSGK--------STGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp TTTTEEEE--CCCCCEE--------EETTEECSEEEEECTTCCEEEEE
T ss_pred ecCCceEE--eeecCCC--------ccCccccccccccCCCCCEEEEE
Confidence 76665321 0000000 01111345678899999998864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.17 E-value=0.00027 Score=60.26 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.9
Q ss_pred eEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 404 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 404 ~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
...|+|||+.|+.. .++.|+++|+.+++..
T Consensus 237 ~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 237 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred cccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence 34689999988763 4678999999887433
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.47 E-value=0.0073 Score=52.86 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=51.1
Q ss_pred CeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCc----cccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010206 236 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 309 (515)
Q Consensus 236 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~ 309 (515)
....+.++|||++++++ -+.++.++|++.-...+.- ...+. ......-....-+|...| +...+---|..|.
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~-~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~ 353 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVV 353 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc-cCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEE
Confidence 35678999999999987 5999999999743222100 00000 001123344667888887 6666667899999
Q ss_pred EEecCc
Q 010206 310 LIDMRQ 315 (515)
Q Consensus 310 ~wd~~~ 315 (515)
-|++..
T Consensus 354 kw~~~~ 359 (459)
T d1fwxa2 354 KWNIED 359 (459)
T ss_dssp EEEHHH
T ss_pred EEecch
Confidence 999864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.27 E-value=0.054 Score=47.81 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=48.2
Q ss_pred ceEEEEECCCCCeEEeecCC-----C------eEEEEEcccCcccCccccCcccccccccCCccceeeeecccCCCcccc
Q 010206 37 IISAIEFDKSGDHLATGDRG-----G------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg~~d-----g------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (515)
++...+...+|+.++.|+.+ + .+.+||..+++..... . ....|.
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~------------------~--~~~~~~----- 75 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT------------------V--TVTKHD----- 75 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE------------------E--EECSCC-----
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC------------------C--CCCCcc-----
Confidence 34555566789998888742 1 3678998877643100 0 001111
Q ss_pred cccccccceeEEEEEeecCCCcEEEeeeCC-CeEEEEEccCCeeEEE
Q 010206 106 LKSLEIEEKINKIRWCQSANSALYLLSTND-KTIKLWKVQEKKVKKV 151 (515)
Q Consensus 106 ~~~~~~~~~v~~l~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~ 151 (515)
.......+ ..++.+++.|+.+ ..+.+||..+......
T Consensus 76 -------~~~~~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~ 113 (387)
T d1k3ia3 76 -------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPG 113 (387)
T ss_dssp -------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEEC
T ss_pred -------cceeEEEE--ecCCcEEEeecCCCcceeEecCccCccccc
Confidence 11233445 4667788877554 6899999998876544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.14 E-value=0.064 Score=46.26 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=91.4
Q ss_pred eEEEEecCCCCEEEEeC-------------CCcEEEEeCCCCCcccceecccCccccccCCceEEEEE--ecCCCcEEEE
Q 010206 237 INSISNNSDGETFISAD-------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAY 301 (515)
Q Consensus 237 v~~~~~~~~~~~l~s~~-------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--~p~~~~~l~~ 301 (515)
.-+++..|++..++++. .|.|.++|+...+.....+...........-....+.. .+++...|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 34677778887776652 38899999886654332221111111111123345544 3455334544
Q ss_pred Ee---cCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC----------------
Q 010206 302 SS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---------------- 362 (515)
Q Consensus 302 ~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---------------- 362 (515)
.. ...+|.+|++........+......+. ....+++.+..++.++++-+.
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~-----------~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCcc-----------ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence 43 356788888765432222222222211 134788888888988887310
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEE-EecCCCcEEEEecCCCC
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS 432 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~s~dg~i~iw~~~~~~ 432 (515)
+...+|.... +. .......-.. -..++++||+++|+ +-+..++|+.|++...+
T Consensus 186 ~~g~v~~~~~-~~-~~~~~~~l~~---------------pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 186 AWSFVTYYSP-ND-VRVVAEGFDF---------------ANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CCEEEEEECS-SC-EEEEEEEESS---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CceeEEEEcC-Cc-eEEEcCCCCc---------------cceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 2344555542 22 2222211111 23799999998765 44577899999997543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.01 E-value=0.093 Score=45.81 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=64.3
Q ss_pred ceeEEEEccCCCEEEEEcC--CeEEEEEeeCC-------CCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEE
Q 010206 344 SISDIKFARNGRHILSRDY--MTLKLWDINMD-------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 414 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 414 (515)
....+.++|||+++++++. .++.|+|+++- ..+...+.+..... ..-.-.+|+..|.-.
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg------------lgPLht~fd~~g~ay 343 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG------------LGPLHTAFDGRGNAY 343 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC------------SCEEEEEECTTSEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC------------cCccccccCCCceEE
Confidence 3567899999999999764 99999999641 11111121111100 001246888888656
Q ss_pred EEecCCCcEEEEecCCC---------CcceeeeccCCCceeeE-----EECCCCCeeEeec
Q 010206 415 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQ-----VQTPSRPSRPLGS 461 (515)
Q Consensus 415 ~s~s~dg~i~iw~~~~~---------~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~ 461 (515)
.|---|..|--|++... ...+..+..|..+=.-. ...|+|+||++.+
T Consensus 344 tslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 344 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred EEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 66678999999998532 12334454444332222 3468999998864
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.45 E-value=0.18 Score=41.53 Aligned_cols=174 Identities=8% Similarity=-0.005 Sum_probs=94.3
Q ss_pred CCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-CCeEEEE
Q 010206 235 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI 311 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~w 311 (515)
..+.+++++.-+..|..+ ..+.|.+.++...... .+ .......+..+++.|.. .+++.... .+..+|+
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l-------~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~ 149 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VL-------FDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIE 149 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------ECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEE
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-EE-------ecccccCCcEEEEeccc-CcEEEeecCCCCcEEE
Confidence 346778887766666554 5789999998754322 11 11223567899999987 45554432 2233344
Q ss_pred --ecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 312 --DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 312 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
++..... ..+- ...-....++++.+.++.|+-.+ . +.|...|+. +.....+......
T Consensus 150 r~~~dG~~~-----~~i~-----------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~--g~~~~~v~~~~~~- 210 (263)
T d1npea_ 150 TSHMDGTNR-----RILA-----------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA--QPGRRKVLEGLQY- 210 (263)
T ss_dssp EEETTSCCC-----EEEE-----------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEEEEECCCS-
T ss_pred EecCCCCCc-----eeee-----------eecccccceEEEeecCcEEEEEeCCCCEEEEEECC--CCCeEEEECCCCC-
Confidence 4432211 1111 01113467899998877777654 3 888888876 3222222211110
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeeccCCCceeeEEEC
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 451 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 451 (515)
-..+++. ++.+..+-...+.|...|..+++.....++........+++.
T Consensus 211 --------------P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 211 --------------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA 259 (263)
T ss_dssp --------------EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred --------------cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence 1266665 344444555678888889887743323333333444455443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.44 E-value=0.26 Score=43.16 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=26.8
Q ss_pred cccceEEEEECCCCCeEEeecCC-CeEEEEEcccCcc
Q 010206 34 EVDIISAIEFDKSGDHLATGDRG-GRVVLFERTDTRD 69 (515)
Q Consensus 34 h~~~v~~v~~s~~g~~lasg~~d-g~v~vw~~~~~~~ 69 (515)
|.......++.++|++++.|+.+ ..+.+||..+...
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w 110 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW 110 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence 33334466788999999998755 5899999887654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.42 E-value=0.19 Score=41.42 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=87.6
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec-------CCeEEEEecCcccccc
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-------KGSIRLIDMRQSALCD 320 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~-------dg~i~~wd~~~~~~~~ 320 (515)
.|+-..+..|+-|+++....+.++.+..+ .+ ....|-.-..+++. ++++..+- .|.+.+|..+.+..
T Consensus 115 ~L~lVT~taVYHW~~~g~s~P~k~fdR~~-~L--~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS~er~~s-- 188 (327)
T d1utca2 115 TVALVTDNAVYHWSMEGESQPVKMFDRHS-SL--AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS-- 188 (327)
T ss_dssp EEEEECSSEEEEEESSSSCCCEEEEECCG-GG--TTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEE--
T ss_pred EEEEEcCCceEEEcccCCCCchhhhhhcc-cc--cCceEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEEeccCcC--
Confidence 45555667789999865554544443322 22 24567777778887 55553321 36778888766531
Q ss_pred cccceeeeccCCCccccccccccceeEEEEccC--C-CEEEEE---cC-CeEEEEEeeCCCCCeeeEeeecccccccccc
Q 010206 321 THSKLFEEQEAPGTRSFFTEIIASISDIKFARN--G-RHILSR---DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 393 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~-~~l~s~---~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
..+.||.+....+.+.-+ . +.++-+ .. ++++|-++..+...-..+........ .+..
T Consensus 189 ---------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~-fppe 252 (327)
T d1utca2 189 ---------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPE 252 (327)
T ss_dssp ---------------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECC-CCTT
T ss_pred ---------------ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEE-CCcc
Confidence 124445444444443321 1 122222 23 78999998752221111110000000 0000
Q ss_pred ccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 394 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 394 ~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
..+| ++| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 253 a~~D--FPv-amqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 253 AQND--FPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp CTTC--CEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ccCC--cEE-EEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 1111 112 6788888888888889999999999999544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.10 E-value=0.45 Score=42.62 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCc-cccccCCceEEEEEecC
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHPT 294 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~i~~~p~ 294 (515)
...++|+|.|++++|++- ..|.|++++..++... .+..+... ....-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~-~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe-ecccCCccccccCCCCceeeEEeCCC
Confidence 567899999999999998 5899999987755422 22211110 11223456889999995
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.44 Score=39.13 Aligned_cols=161 Identities=9% Similarity=0.002 Sum_probs=91.9
Q ss_pred cCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEec--CCeEE
Q 010206 234 DYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIR 309 (515)
Q Consensus 234 ~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~--dg~i~ 309 (515)
...+..+++.+.+..|..+ ..+.|.+.++....... ...........++++|.. .+|..... .+.|.
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~--------~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~ 146 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------LFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIK 146 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--------EEECTTCCEEEEEEETTT-TEEEEEECSSSCEEE
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEE--------EEcCCCCCcceEEEEccc-CeEEEeccCCCccee
Confidence 3556788988766666665 57889999987544221 122234567899999965 34444432 34566
Q ss_pred EEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeecccc
Q 010206 310 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLR 387 (515)
Q Consensus 310 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~ 387 (515)
-.++..... ..+- ...-.....+++.+.++.|+-++. +.|...++.. ..............
T Consensus 147 r~~~dGs~~-----~~l~-----------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~ 209 (266)
T d1ijqa1 147 KGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLA 209 (266)
T ss_dssp EEETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTS
T ss_pred EeccCCCce-----eccc-----------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCccc
Confidence 666543321 1111 111134678999998877776643 7888888863 22222222221110
Q ss_pred ccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 388 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 388 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
....+++. ++.+..+-..++.|+..+..+++..
T Consensus 210 -------------~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 210 -------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp -------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred -------------ccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence 01256665 3344445457788888887776433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.62 Score=38.11 Aligned_cols=195 Identities=8% Similarity=-0.028 Sum_probs=113.1
Q ss_pred CcCCeEEEEecCCCCEEEEe--CCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010206 233 HDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 310 (515)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~~dg~i~~ 310 (515)
+...+..++|++..+.|.-+ .++.|+..+++..... .+ +......+.++++..-+.++..+-...+.|.+
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v-------~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~ 105 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TI-------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV 105 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EE-------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EE-------EEeccccccEEEEeccCCeEEEeccCCCEEEE
Confidence 33457789999887777765 5788988888754332 11 11223467899998766345555556789999
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC--CeEEEEEeeCCCCCeeeEeeeccccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRP 388 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~ 388 (515)
.++..... ..+. .........+++.|...+++-... +..+|+.....+.....+....
T Consensus 106 ~~~dg~~~-----~~l~-----------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~---- 165 (263)
T d1npea_ 106 AKMDGTQR-----RVLF-----------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN---- 165 (263)
T ss_dssp EETTSCSC-----EEEE-----------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT----
T ss_pred EecCCceE-----EEEe-----------cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec----
Confidence 99865431 1111 111135788999997777665332 3445665554344333332211
Q ss_pred cccccccCCCccceeeEEEcCCCCEEEEe-cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEE
Q 010206 389 KLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 467 (515)
+.....+++++.++.|... ...+.|...++... .....+.+-..| ..+++. .+..+.+-...+.|.
T Consensus 166 ----------~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~~P-~~lav~-~~~lYwtd~~~~~I~ 232 (263)
T d1npea_ 166 ----------LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYP-FAVTSY-GKNLYYTDWKTNSVI 232 (263)
T ss_dssp ----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSE-EEEEEE-TTEEEEEETTTTEEE
T ss_pred ----------ccccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCCCc-EEEEEE-CCEEEEEECCCCEEE
Confidence 1112378999888877544 56788988888744 332333433333 466664 344445544455555
Q ss_pred E
Q 010206 468 R 468 (515)
Q Consensus 468 l 468 (515)
.
T Consensus 233 ~ 233 (263)
T d1npea_ 233 A 233 (263)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.62 Score=38.16 Aligned_cols=182 Identities=8% Similarity=-0.051 Sum_probs=99.2
Q ss_pred EEEEeCCCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEecCccccccccccee
Q 010206 248 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLF 326 (515)
Q Consensus 248 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~ 326 (515)
+|+.+....|+-.++.+.... . +......+..++|++.. +.|.... ..+.|.-.++........ ....
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~-~--------~~~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~~-~~~~ 71 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYT-S--------LIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSS-YDTV 71 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCE-E--------EECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC---------CEEE
T ss_pred EEEEECCCeEEEEECCCCcce-e--------eeCCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCcc-eEEE
Confidence 455554456888888754422 1 11234457789999887 5555554 466677666543221110 0000
Q ss_pred eeccCCCccccccccccceeEEEEccCCCEEEEEc-C-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceee
Q 010206 327 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (515)
.......+..+++.+.+..|+..+ . ++|.+.++. +.....+...... ....
T Consensus 72 -----------~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~--g~~~~~~~~~~~~--------------~P~~ 124 (266)
T d1ijqa1 72 -----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 124 (266)
T ss_dssp -----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEE
T ss_pred -----------EeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC--CceEEEEEcCCCC--------------Ccce
Confidence 111113467788888777777654 3 899999987 3333332221111 0237
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCee-EeecCCCeEEE
Q 010206 405 CCLSGDGGRVATGS--YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 468 (515)
Q Consensus 405 ~~~s~~~~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~v~l 468 (515)
++++|...+|+... ..+.|.-.++... ...............+++.+.+..| .+-...+.|..
T Consensus 125 l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~ 190 (266)
T d1ijqa1 125 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (266)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeeccccEEEEecCCcCEEEE
Confidence 89998766665433 3456766676533 2322333344556789998876654 44455667665
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.01 E-value=0.25 Score=44.11 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=61.7
Q ss_pred eeEEEEccCCCEEEE-----EcC-CeEEEEEeeCCCCCee-eEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 345 ISDIKFARNGRHILS-----RDY-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 345 i~~~~~s~~~~~l~s-----~~~-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
+..+++||++++++. |++ ..|+++|+.+ ++.+. .+..... ..++|++|++.|+..
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~t-g~~~~~~i~~~~~-----------------~~~~W~~D~~~~~Y~ 188 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-AKELPDVLERVKF-----------------SCMAWTHDGKGMFYN 188 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-TEEEEEEEEEECS-----------------CCEEECTTSSEEEEE
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCc-ceecccccccccc-----------------cceEEcCCCCEEEEE
Confidence 456778999999985 344 7899999997 55443 2221111 168999999988754
Q ss_pred cCC----------------CcEEEEecCCCCcce-eeeccCCC--ceeeEEECCCCCeeEe
Q 010206 418 SYS----------------NLFRVFGCSEGSAES-TTLEASKN--PMRRQVQTPSRPSRPL 459 (515)
Q Consensus 418 s~d----------------g~i~iw~~~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~l~s 459 (515)
..| ..|+.+.+.+..... ..++.... .+..+..+.++++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred EeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence 322 268888887763332 23333333 3456677899998753
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.57 E-value=1.9 Score=36.69 Aligned_cols=125 Identities=7% Similarity=0.080 Sum_probs=67.1
Q ss_pred ceEEEEE--ecCCCc-EEEEEecCCeEEEEecCc---ccccccccceeeeccCCCccccccccccceeEEEEccCCCEEE
Q 010206 285 VITSAEF--HPTHCN-MLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 358 (515)
Q Consensus 285 ~i~~i~~--~p~~~~-~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 358 (515)
.++.+++ +|.... +++....+|.+..|.+.. +....+.++.|... ..+..|.+.+....|+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-------------~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-------------SQTEGMAADDEYGSLY 195 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-------------SCEEEEEEETTTTEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-------------CccceEEEeCCCCcEE
Confidence 4677777 565323 566677789998887743 22222333344332 4588999999888888
Q ss_pred EEcC-CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEE--cCCCC-E-EEEecCCCcEEEEecCCC
Q 010206 359 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGG-R-VATGSYSNLFRVFGCSEG 431 (515)
Q Consensus 359 s~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~-l~s~s~dg~i~iw~~~~~ 431 (515)
.+.. ..|..++..........+...... . .-..++-.++. ..++. | |+|.-.+++..+||..+.
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g-~--------~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADG-R--------HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSS-S--------SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccceEEEEeccCCCccceeeecccC-c--------cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8866 445444443211111222111100 0 00112334443 23333 4 455557889999999764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.71 E-value=3 Score=36.70 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=24.8
Q ss_pred ceEEEEECCCCCeEEee-----cCCCeEEEEEcccCcc
Q 010206 37 IISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRD 69 (515)
Q Consensus 37 ~v~~v~~s~~g~~lasg-----~~dg~v~vw~~~~~~~ 69 (515)
.+...++||||+++|.+ +....|+++|+.+++.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~ 163 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCccee
Confidence 45567899999998854 2234799999998874
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.70 E-value=2.5 Score=35.82 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred CCCCCcccEEeeeeeeccc-ccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcc-cceeccc
Q 010206 199 FPPGGVSSLRLPVVVVTSQ-ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS-FNIVDVK 275 (515)
Q Consensus 199 ~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~-~~~~~~~ 275 (515)
+....+|.+..|. +... .........+.+ .-...+..+.+.++...|..+ .+.-|..++.+..... ..++...
T Consensus 147 fv~~k~G~v~q~~--l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~ 222 (353)
T d1h6la_ 147 MVTGKEGEFEQYE--LNADKNGYISGKKVRAF--KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (353)
T ss_dssp EEECSSSEEEEEE--EEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEEC
T ss_pred EEEcCCceEEEEE--EEcCCCCceeeEeeecc--CCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecc
Confidence 6667788998888 4332 233334444444 334578889999998888888 6666655665422211 1111110
Q ss_pred CccccccCCceEEEEEec--CCC-cEEEEEecCCeEEEEecCcc
Q 010206 276 PANMEDLTEVITSAEFHP--THC-NMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 276 ~~~~~~~~~~i~~i~~~p--~~~-~~l~~~~~dg~i~~wd~~~~ 316 (515)
.-......+-.|+.-. ++. .+|++.-.+++..+||....
T Consensus 223 --~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 223 --DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp --SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred --cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 0112355677777543 221 45555555889999998653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.27 E-value=3.2 Score=33.97 Aligned_cols=133 Identities=7% Similarity=0.131 Sum_probs=73.4
Q ss_pred CCeEEEEecCCCCEEEE-e---C----CCcEEEEeCCCCCcccceecccCccccccCCceEEEEEecC--CCcEEEEEec
Q 010206 235 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSS 304 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~p~--~~~~l~~~~~ 304 (515)
..|-.-..+++.++++. | . .|.+.+|..+..... .+++|.+....+.+.-+ -..+|+.+..
T Consensus 148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 218 (327)
T d1utca2 148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 218 (327)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc---------cccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence 55667777888888774 3 2 367788888754322 45666555444443211 1123333322
Q ss_pred ---CCeEEEEecCccccc-ccc-cceeeeccCCCccccccccccceeEEEEccCCCEEEEEcC-CeEEEEEeeCCCCCee
Q 010206 305 ---KGSIRLIDMRQSALC-DTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 378 (515)
Q Consensus 305 ---dg~i~~wd~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-~~i~iwd~~~~~~~~~ 378 (515)
.+.+++.++.....- ... .+..+..-.+.. -.+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea------~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i~ 291 (327)
T d1utca2 219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 291 (327)
T ss_dssp ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccc------cCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEEE
Confidence 367888888653211 110 111111111100 0123456888887777777665 9999999997 77666
Q ss_pred eEeee
Q 010206 379 TFQVH 383 (515)
Q Consensus 379 ~~~~~ 383 (515)
.-+-.
T Consensus 292 ~nRIs 296 (327)
T d1utca2 292 MNRIS 296 (327)
T ss_dssp EEECC
T ss_pred EeecC
Confidence 55433
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.49 E-value=5.3 Score=33.66 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.1
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEecCcc
Q 010206 283 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 316 (515)
Q Consensus 283 ~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~ 316 (515)
-...+.|+++|++..++++-+..+.|+.|++...
T Consensus 205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 3457899999998455566667889999998653
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.96 E-value=9.7 Score=34.76 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred CeEEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 363 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 363 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
|.|.-+|+.+ ++.+-+....... .+-..+..+.++++|+.||.++-+|.++|+.+
T Consensus 444 G~l~AiD~~T-G~~~W~~~~~~~~----------------~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeccCC-CceeeEcCCCCCC----------------CcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence 6778888876 5554333221111 01122335668888999999999999998544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.34 E-value=7.9 Score=33.05 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=77.3
Q ss_pred ceeEEEEccCCCEEEEEcCCeEEEEEeeC------CCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEe
Q 010206 344 SISDIKFARNGRHILSRDYMTLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 417 (515)
Q Consensus 344 ~i~~~~~s~~~~~l~s~~~~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 417 (515)
...-+++++..-++++|+...+.|..+.. ....-..+.. ...+..|..++|+.| .|+..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~-------------~~~ip~v~~vafs~d--~l~v~ 102 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKW-------------EKEIPDVIFVCFHGD--QVLVS 102 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSE-------------EEECTTEEEEEEETT--EEEEE
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCccee-------------ccCCCCeEEEEeeCC--EEEEE
Confidence 46678888876677776655777877532 0000000100 011223568999855 44443
Q ss_pred cCCCcEEEEecCCCCcceeeeccCCCceeeEEECCCCCeeEeecCCCeEEEecCCCCCccccC--CccccccCCeeEEEE
Q 010206 418 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN--GNAFDFSMKLLHLAW 495 (515)
Q Consensus 418 s~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 495 (515)
.++.+..++..+-... .....-..++..+...|.. ++....++.+-++.-.+.....+. .....-.+.+.+++|
T Consensus 103 -~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~p~~--~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~w 178 (381)
T d1xipa_ 103 -TRNALYSLDLEELSEF-RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLL 178 (381)
T ss_dssp -ESSEEEEEESSSTTCE-EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEE
T ss_pred -eCCCEEEEEeeccccc-cccccccccccceecCCce--eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEE
Confidence 4456778877654222 2223334567777777764 333444554443111111100110 111223467899999
Q ss_pred cCCCCEEEEEcCCc
Q 010206 496 HPSENSIACAASNS 509 (515)
Q Consensus 496 s~~~~~la~~~~~~ 509 (515)
++.|+.++++..+.
T Consensus 179 s~kgkq~v~~~g~~ 192 (381)
T d1xipa_ 179 KDRSFQSFAWRNGE 192 (381)
T ss_dssp TTSCEEEEEEETTE
T ss_pred eCCcEEEEEeCCCc
Confidence 99999998876543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.18 E-value=8 Score=32.99 Aligned_cols=188 Identities=9% Similarity=-0.002 Sum_probs=97.3
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEcCCe
Q 010206 285 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 364 (515)
Q Consensus 285 ~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~~~ 364 (515)
...-++.++.. .+++.|+.++ +.+..+..-... ++....... .........|..++|+.+ .|+....+.
T Consensus 38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~------~~~~~~~~~-~~~~~~ip~v~~vafs~d--~l~v~~~~~ 106 (381)
T d1xipa_ 38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDH------ITSDSTPLT-FKWEKEIPDVIFVCFHGD--QVLVSTRNA 106 (381)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHH------HHSSSCCCC-CSEEEECTTEEEEEEETT--EEEEEESSE
T ss_pred ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHH------hhccCCCCc-ceeccCCCCeEEEEeeCC--EEEEEeCCC
Confidence 34567788765 5777777774 566665332110 000000000 001111135888999744 676666677
Q ss_pred EEEEEeeCCCCCeeeEeeeccccccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEecCCCCcceeeec----c
Q 010206 365 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE----A 440 (515)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~ 440 (515)
+..++... -........-... +.++.+.|. .++....+|.+.++++..++....... .
T Consensus 107 l~~~~~~~-l~~~~~~~~~~~~---------------~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 168 (381)
T d1xipa_ 107 LYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD 168 (381)
T ss_dssp EEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred EEEEEeec-ccccccccccccc---------------ccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE
Confidence 88888764 2222222111111 236666664 556666788999999988743321100 1
Q ss_pred CCCceeeEEECCCCCeeEeecCCCe-EEEecCCCCCccccCCccccccCCeeEEEEcCCCCEEEEE
Q 010206 441 SKNPMRRQVQTPSRPSRPLGSLSGV-VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 505 (515)
Q Consensus 441 ~~~~v~~~~~~~~~~~l~s~~~d~~-v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~ 505 (515)
-...+.++.+++.++.++.+..++. .+. +...+. .+. ........|.++.|-.+..++++-
T Consensus 169 ~~~~~~~v~ws~kgkq~v~~~g~~~q~k~-~i~~~~--~~~-~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 169 VTNSQLAVLLKDRSFQSFAWRNGEMEKQF-EFSLPS--ELE-ELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ECSSEEEEEETTSCEEEEEEETTEEEEEE-EECCCH--HHH-TSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ecCCceEEEEeCCcEEEEEeCCCceeecc-CCCCcc--ccC-CCcCCCcceeEEEEecCceEEEEE
Confidence 1245677888888887777643321 221 001000 010 001124568899998777777644
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.03 E-value=12 Score=34.01 Aligned_cols=28 Identities=4% Similarity=0.004 Sum_probs=22.5
Q ss_pred cEEEeeeCCCeEEEEEccCCeeEEEeec
Q 010206 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (515)
Q Consensus 127 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 154 (515)
..++.++.|+.+.-.|.++++.......
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~ 143 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEV 143 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccc
Confidence 3688888999999999999987765543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.54 E-value=6.3 Score=30.20 Aligned_cols=155 Identities=9% Similarity=0.023 Sum_probs=84.3
Q ss_pred ceeEEEEEeecCCCcEEEeeeCCCeEEEEEccCCeeEEEeeccCCcccCCCCCCccCCCCcCCCceeecCCCcccccc--
Q 010206 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF-- 190 (515)
Q Consensus 113 ~~v~~l~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~l~~~~-- 190 (515)
-+|.++++ .+....++|+......+|-++.+++........- +....-.+.++.-+.
T Consensus 104 vRI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPpF------------------sFVtDI~~d~I~G~g~~ 162 (313)
T d2hu7a1 104 MRILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPGF------------------GFVSDIRGDLIAGLGFF 162 (313)
T ss_dssp BEEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSC------------------EEEEEEETTEEEEEEEE
T ss_pred EEEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCCc------------------ceEEeccCCeEEEEeee
Confidence 35667766 3445788888888899999999998877655411 111112233321100
Q ss_pred ccCCCCCCCCCCCcccEEeeeeeecccccccccceeeeeeccCcCCeEEEEecCCCCEEEEe-C---CCcEEEEeCCCCC
Q 010206 191 GCASNDSSFPPGGVSSLRLPVVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISN 266 (515)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~ 266 (515)
..-..+++.+--..|.+++++ ...+.++.....+..+. ++. . .....-+|++.++
T Consensus 163 ~g~~~sfF~adl~SG~lri~t--------------------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 163 GGGRVSLFTSNLSSGGLRVFD--------------------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp ETTEEEEEEEETTTEEEEEEC--------------------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred cCCcceEEEEecccCCEEEec--------------------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 000011222222345555543 34456666667776665 444 2 3333345666443
Q ss_pred cccceecccCccccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEe
Q 010206 267 QSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLID 312 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~-~~~~i~~i~~~p~~~~~l~~~~~dg~i~~wd 312 (515)
- .-++++...+.. ..-.|.-+-+.|++ ++++.+-.||.-++|+
T Consensus 222 y--erve~P~kd~~sy~p~~I~~~~Y~Pdd-~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 222 V--EDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI 265 (313)
T ss_dssp E--EECCCSSCHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred e--eeeecCcccceeecceEEEeeeeCCCC-cEEEEEecCCchheee
Confidence 2 111111111111 13456667799998 8888999999999987
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=84.20 E-value=15 Score=33.42 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=22.7
Q ss_pred cCCCCEEEEecCCCcEEEEecCCCCcc
Q 010206 408 SGDGGRVATGSYSNLFRVFGCSEGSAE 434 (515)
Q Consensus 408 s~~~~~l~s~s~dg~i~iw~~~~~~~~ 434 (515)
+-.|.+|++|+.||.++.+|.++|+.+
T Consensus 485 stagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 485 TTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 346788999999999999999999544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.57 E-value=14 Score=32.46 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEecCccc
Q 010206 284 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 317 (515)
Q Consensus 284 ~~i~~i~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 317 (515)
...++|+|.|++ ++|++--..|.|++++..++.
T Consensus 27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCc
Confidence 457899999999 777765457999999877764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=83.37 E-value=7.1 Score=35.72 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCeEEEEecCcccccc
Q 010206 294 THCNMLAYSSSKGSIRLIDMRQSALCD 320 (515)
Q Consensus 294 ~~~~~l~~~~~dg~i~~wd~~~~~~~~ 320 (515)
.+ .+++.|+.||.++.+|.++|+.+.
T Consensus 487 ag-glVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 487 AG-NVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp TT-TEEEEECTTSEEEEEETTTCCEEE
T ss_pred cC-CEEEEECCCCeEEEEECCCCcEeE
Confidence 44 588889999999999999998754
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.59 E-value=9.4 Score=29.22 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=81.3
Q ss_pred CCeEEEEecCCCCEEEEe-CCCcEEEEeCCCCCcccceecccCccccc--cCCceEEEEEecCCCcEEEEEec-CCeEEE
Q 010206 235 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSS-KGSIRL 310 (515)
Q Consensus 235 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~p~~~~~l~~~~~-dg~i~~ 310 (515)
-+|.+++.. +.....+| ......+|-++.++ ..++.+++|-.+-. ....|..+-+-.-++.-|+++.. .|.+++
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGk-lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGG-LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTE-EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCc-eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEE
Confidence 345555543 23344455 66667788777543 33444343322211 13445555554333355666666 788888
Q ss_pred EecCcccccccccceeeeccCCCccccccccccceeEEEEccCCCEEEEEc----CCeEEEEEeeCCCCCeeeEeeeccc
Q 010206 311 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHL 386 (515)
Q Consensus 311 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~----~~~i~iwd~~~~~~~~~~~~~~~~~ 386 (515)
++...+ .++....++..+. +++- .....-+|++. .....+..+...
T Consensus 182 ~tpkeG---------------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s--~~yerve~P~kd 231 (313)
T d2hu7a1 182 FDSGEG---------------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRD--GSVEDLELPSKD 231 (313)
T ss_dssp ECCSSE---------------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTT--CCEEECCCSSCH
T ss_pred ecCCCC---------------------------cccceeEccCcee-eeccCCCCceEEEEEeccc--CceeeeecCccc
Confidence 887654 3566666765555 4431 12222345552 222222222111
Q ss_pred cccccccccCCCccceeeEEEcCCCCEEEEecCCCcEEEEe
Q 010206 387 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 427 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~s~dg~i~iw~ 427 (515)
++.-.. ..|+-+-+.||+++++.+-.||.-++|.
T Consensus 232 ------~~sy~p-~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 232 ------FSSYRP-TAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp ------HHHHCC-SEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ------ceeecc-eEEEeeeeCCCCcEEEEEecCCchheee
Confidence 000000 1133456899999989999999999987
|