Citrus Sinensis ID: 010225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEccHHHHHHHHHcccHHHHHHHHcccccEEEEEccccccEEEEEcccccccccEEEEccHHHHHHHHHHHHcccccEEEcccEEEEEEEcccccccccccccccccEEEccccEEEEcccccEEEEEEEEccccccHHHHHHcccccccccccEEEEEEEEEcccccEEEEEEcccccEEEcccccccEEEEEcccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEccccEEcccccccHHHHccccEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHcHHHHHHHHHHHHHHcHHHccccccccccccccccccccEEEEEEccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccEEEccHHHHHHHHHcccHHHHHHHHccHHcccEEEcccccEEEEEcHHHccccHccHEHHHHHHHHHHHHHHHHccccEEEcccHEEEEEccccccEEEcccccccHHHccccccEEEEEccccEEEEEEEEcccccHHHHHHcccccccEccccEEEEEEEEEccccccEEEEEcccccEEEEcccccccEEEEEccHHHHHHHHcccHHHHHHHHHHHcccccccccHHHccccHHHHHHHHcccccccccccccccEEEEEccccccccccHHHHHHHHcccEEEEcccHccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MNRIIVGRLSVNVSGLRVLQRSFCSSVAekasssnsgqpssesevkqsftnnddqydvAVVGGGMVGMALACSlasmpltkHLSVAIidsnpalgksnfikkedppdprvstvtpaTISFFKEIGAWQYVQQHRHAYFDKMqvwdytglgytkynardvNKEILGCVVENKVLHSSLLScmqntefqktiypsrltsmallpssssisvdstpsattlftkghlakldlsdgtsLYAKLVGADGGKSRVRELAGfkttgwsysQNAIICTVEHNKENYCAWqrflpagpiallpigdnfsnivwtmnpkdasdcksmneDDFVKILNHAldygygphpksissgsvdmfswfrgdatlsakecfevpprVVKLASermvfplslkhannyvsKRVVLIGDaahtvhplagqgvnlgfgdasTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQkaysvdfgplNILRAAAFHgaqyisplkrniisyasgeqrlplplplft
Flexible Loop (DISEMBL)
mnriivgrlsvnvsglrVLQRSFCSSVAEkasssnsgqpssesEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKsnfikkedppdprvSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLvgadggksRVRELAGfkttgwsysqNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISyasgeqrlplplplft
Low Complexity Region (SEG)
MNRIIVGRLSVNVSGLRVLQRsfcssvaekasssnsgqpssesEVKQSFTNNDDQYDvavvgggmvgmaLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRltsmallpssssisvdstpsatTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Disordered region (IsUnstruct)
***IIVGRLSVNVSGLRVLQRSFC******************************QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP*******************TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLT********************TLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS*************
Disordered Region (DISOPRED)
************VSGLRVLQRSFCSSVA****************************DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL**********PPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPL**
Disordered Region (DISEMBL)
MNRIIVGRLSVNVSGLRVLQRSFC************************FTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS**********SATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Disordered Region (DISPRO)
*NRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSS******************DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q6DF46	464	Ubiquinone biosynthesis m	yes	no	0.824	0.913	0.345	1e-70
F1RAX8	484	Ubiquinone biosynthesis m	yes	no	0.892	0.948	0.325	4e-69
Q8R1S0	476	Ubiquinone biosynthesis m	yes	no	0.889	0.960	0.347	2e-65
Q68FU7	476	Ubiquinone biosynthesis m	yes	no	0.846	0.913	0.352	1e-64
Q9Y2Z9	468	Ubiquinone biosynthesis m	yes	no	0.844	0.927	0.342	6e-64
Q2KIL4	469	Ubiquinone biosynthesis m	yes	no	0.832	0.912	0.353	1e-62
Q54EN1	495	Ubiquinone biosynthesis m	yes	no	0.869	0.903	0.323	2e-58
O01884	451	Probable ubiquinone biosy	yes	no	0.842	0.960	0.295	7e-55
P25535	400	Protein VisC OS=Escherich	N/A	no	0.756	0.972	0.303	1e-52
P75728	391	2-octaprenyl-3-methyl-6-m	N/A	no	0.735	0.966	0.298	5e-51

>sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6 OS=Xenopus tropicalis GN=coq6 PE=2 SV=1

 Score =  268 bits (684), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 255/454 (56%), Gaps = 30/454 (6%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
           YDV + GGGMVG A+AC+L S P  +H  V ++++     +  F    +    RVS++TP
Sbjct: 32  YDVVISGGGMVGTAMACALGSDPHLQHKKVLLLEAG---NRKPFDHLPENFSNRVSSITP 88

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
            + +     GAW ++   R   + +MQVWD        ++   +  E +G +VEN ++  
Sbjct: 89  GSATLLASFGAWDHILAMRLKPYKRMQVWDACSDALITFDKDAL--EDMGYIVENDIIIE 146

Query: 176 SLLSCMQ-NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 234
           +L   ++  ++  + +Y SR  S +  P  ++    +TP            +++L+DG  
Sbjct: 147 ALTKQLELMSDHVEVMYRSRALSYSWPPPYNN--GKATP----------WVEIELADGQR 194

Query: 235 LYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIA 291
           L+ KL +GADG  S VR  AG ++  W+Y+  A++ T+  ++  +N  AWQRFLP GPIA
Sbjct: 195 LHTKLLIGADGHNSMVRSAAGMQSVQWNYNHAAVVATLHLSEATDNNVAWQRFLPTGPIA 254

Query: 292 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS-GSV--DM 348
           LLP+ D  S++VW+ +P+ AS+  SM+E+ FV  +N A  +    H + I+S GS+    
Sbjct: 255 LLPLSDTCSSLVWSTSPEHASELVSMDEESFVDTVNSAF-WSNENHSEFITSAGSLLHSA 313

Query: 349 FSWFRGDATLSAKECFEVPPRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
            S+F      +     ++PP V ++  + R  FPL LKHA  Y+  RV LIGDAAH VHP
Sbjct: 314 LSFFMP----TGSSPRQLPPSVSRVEQNSRASFPLGLKHATEYIRHRVALIGDAAHRVHP 369

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           LAGQGVN+GFGD + L+  +++    G+D+G    L +YE ER+  N+ +MA +D  ++ 
Sbjct: 370 LAGQGVNMGFGDVACLAHHLSQAAFNGSDLGSTKHLLEYETERQRHNLPLMAAVDLLKRL 429

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
           Y+    P+ +LR         ++P+K  I+++AS
Sbjct: 430 YNTKQPPIVLLRTLGLQATNALTPVKEQIMAFAS 463

Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|F1RAX8|COQ6_DANRE Ubiquinone biosynthesis monooxygenase COQ6 OS=Danio rerio GN=coq6 PE=2 SV=1

 Score =  262 bits (670), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 268/507 (52%), Gaps = 48/507 (9%)

Query: 6   VGRLSVNV---SGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVG 62
           +GR  V V   +G R + RSF        SSS   Q SS SE        ++ +D+ + G
Sbjct: 14  IGRQCVAVRTLNGARAVHRSF--------SSSEHDQDSSTSE--------NELFDIIISG 57

Query: 63  GGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFK 122
           GGMVG A+ACSL   P      + ++++     +    K  +    RVS+++P + +   
Sbjct: 58  GGMVGTAMACSLGLDPNLTGKKILLLEAG---HEKKMDKIPETYSTRVSSISPGSATLLS 114

Query: 123 EIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQ 182
            +GAW ++   R   ++KMQVWD        ++  ++  E +  +VEN V+ ++L   +Q
Sbjct: 115 GLGAWDHIVNMRCKPYNKMQVWDACSDALITFDKENLQDE-MAYIVENDVIVAALTKQLQ 173

Query: 183 N-TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-V 240
             ++  K  Y +++      P    +S +S P            ++ L++G +L+ KL +
Sbjct: 174 TLSDHVKVQYRTKVVKYTW-PHPYHVS-ESIP----------WVQVALANGKTLHTKLLI 221

Query: 241 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIALLPIGDN 298
           GADG  S VR  AG  T  W+Y Q+A++  +  ++  EN  AWQRFLP GPIA+LP+ D 
Sbjct: 222 GADGPNSMVRREAGIPTVKWNYDQSAVVAVLHLSEPTENNVAWQRFLPTGPIAMLPLSDT 281

Query: 299 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL 358
            S++VW+ + + A +   M+E+ FV  +N A  +    H + + +      S FR   ++
Sbjct: 282 ESSLVWSTSHQHAEELLQMDEESFVDAINSAF-WSNENHSELVETAG----SLFRMALSV 336

Query: 359 ---SAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVN 414
               +    ++PP V  +  + R++FPL + HA  Y+  RV LIGDAAH VHPLAGQG N
Sbjct: 337 LMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEYIRHRVALIGDAAHRVHPLAGQGAN 396

Query: 415 LGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 474
           LGFGD S L++++++    G DIG    L ++E ER+  N+ MM  +D  ++ YS +  P
Sbjct: 397 LGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETERQRHNLPMMTAIDLMKRLYSSNTAP 456

Query: 475 LNILRAAAFHGAQYISPLKRNIISYAS 501
           + +LR         + PLK  I+++AS
Sbjct: 457 MVLLRTFGLQATNAVPPLKEQIMAFAS 483

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8R1S0|COQ6_MOUSE Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus musculus GN=Coq6 PE=2 SV=3

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 260/486 (53%), Gaps = 29/486 (5%)

Query: 23  FCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH 82
            C      A  +  G P   S+ + + ++ D  YDV V GGG+VG A+AC+L        
Sbjct: 12  LCVRWWSSAQLAARGGPLVASQ-RWAGSSADTVYDVVVSGGGLVGSAMACALGHDIHFHD 70

Query: 83  LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 142
             + ++++ P   K    K  +    RVS+++P + +     GAW ++   R   F +MQ
Sbjct: 71  KKILLLEAGP---KKALEKLSETYSNRVSSISPGSTTLLSSFGAWDHICNMRCKAFRRMQ 127

Query: 143 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALL 201
           VWD        ++ RD N + +G +VEN V+  +L   ++   +  K +Y S+    +  
Sbjct: 128 VWDSCSEALIMFD-RD-NLDDMGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGYSW- 184

Query: 202 PSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGW 260
           P + S++ DS+P             + L DG++L  KL +GADG KS VR+ AG +   W
Sbjct: 185 PGAFSMA-DSSP----------WVHITLGDGSTLQTKLLIGADGHKSGVRQAAGIQNVSW 233

Query: 261 SYSQNAIICTVEHNK--ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMN 318
            Y Q+A++ T+  ++  EN  AWQRFLP+GPIALLP+ D  S++VW+ + + A++  SM+
Sbjct: 234 KYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMD 293

Query: 319 EDDFVKILNHALDYGYGPHPKSISSGS--VDMFSWFRGDATLSAKECFEVPPRVVKL-AS 375
           E++FV  +N A  +    H   + S S  V           +SA++   +PP + K+ A 
Sbjct: 294 EEEFVDAINSAF-WSDVHHTDFVDSASAMVRHAVALLKPTKVSARQ---LPPSIAKVDAK 349

Query: 376 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 435
            R +FPL L HA  YV  RV LIGDAAH +HPLAGQGVN+GFGD S+L   ++     G 
Sbjct: 350 SRALFPLGLGHAAEYVRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGK 409

Query: 436 DIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRN 495
           D+G  S L  YE +R+  N  ++A  D  ++ YS    PL +LR         +SPLK  
Sbjct: 410 DLGSMSHLTGYETDRQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLKEQ 469

Query: 496 IISYAS 501
           I+++AS
Sbjct: 470 IMAFAS 475

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q68FU7|COQ6_RAT Ubiquinone biosynthesis monooxygenase COQ6 OS=Rattus norvegicus GN=Coq6 PE=2 SV=1

 Score =  247 bits (631), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 250/463 (53%), Gaps = 28/463 (6%)

Query: 46  KQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
           + + ++ D  YDV V GGGMVG A+AC+L          + ++++ P   K    K  + 
Sbjct: 34  RWTSSSTDSVYDVVVSGGGMVGSAMACALGHDIHFHDKKILLLEAGP---KKTLEKLSET 90

Query: 106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
              RVS+++  + +     GAW ++   R   F +MQVWD        ++  +++   +G
Sbjct: 91  YSNRVSSISLGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFDKDNLDD--MG 148

Query: 166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 224
            +VEN V+  ++   ++   +  K +Y S+    A  P   S++ DS+P           
Sbjct: 149 YIVENDVIMHAITKQLEAVADRVKVLYESKAVGYAW-PGPFSLA-DSSP----------W 196

Query: 225 AKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAW 281
             + L DG++L  KL +GADG  S VR+ AG +  GW+Y Q+A++ T+  ++  EN  AW
Sbjct: 197 VHITLGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVATLHLSEATENNVAW 256

Query: 282 QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI 341
           QRFLP+GPIALLP+ D  S++VW+ +   A++  SM+E++FV  +N A  +    H   +
Sbjct: 257 QRFLPSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAINSAF-WSDVHHTDFV 315

Query: 342 SSGS--VDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLI 398
            S S  V           +SA++   +PP V K+ A  R +FPL L HA  YV  RV LI
Sbjct: 316 DSASAMVHHAVALLKPTKVSARQ---LPPSVAKVDAKSRALFPLGLGHAAEYVRPRVALI 372

Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           GDAAH VHPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++
Sbjct: 373 GDAAHRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYETDRQRHNTALL 432

Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
           A  D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct: 433 AATDLLKRLYSTSTTPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxygenase COQ6 OS=Homo sapiens GN=COQ6 PE=1 SV=2

 Score =  245 bits (625), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 245/464 (52%), Gaps = 30/464 (6%)

Query: 46  KQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
           + S  + D  YDV V GGG+VG A+AC+L          + ++++ P   K    K  + 
Sbjct: 26  RWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGP---KKVLEKLSET 82

Query: 106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
              RVS+++P + +     GAW ++   R+  F +MQVWD        ++  +++   +G
Sbjct: 83  YSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFDKDNLDD--MG 140

Query: 166 CVVENKVLHSSLLSCMQNTEFQKTI-YPS---RLTSMALLPSSSSISVDSTPSATTLFTK 221
            +VEN V+  +L   ++    + T+ Y S   R T     P +     DS+P        
Sbjct: 141 YIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMA-----DSSP-------- 187

Query: 222 GHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENY 278
                + L DG++   KL +GADG  S VR+  G +   W+Y Q+A++ T+  ++  EN 
Sbjct: 188 --WVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENN 245

Query: 279 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP 338
            AWQRFLP+GPIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H 
Sbjct: 246 VAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAF-WSDADHT 304

Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVL 397
             I +    M  +       +     ++PP V ++ A  R++FPL L HA  YV  RV L
Sbjct: 305 DFIDTAGA-MLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVAL 363

Query: 398 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 457
           IGDAAH VHPLAGQGVN+GFGD S+L+  ++     G D+G  S L  YE ER+  N  +
Sbjct: 364 IGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTAL 423

Query: 458 MAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
           +A  D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct: 424 LAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFAS 467

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q2KIL4|COQ6_BOVIN Ubiquinone biosynthesis monooxygenase COQ6 OS=Bos taurus GN=COQ6 PE=2 SV=2

 Score =  241 bits (615), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 247/456 (54%), Gaps = 28/456 (6%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
           D+ YDV V GGG+VG A+AC+L          + ++++ P   K    K  +    RVS+
Sbjct: 34  DNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGP---KKVLEKLPETYSNRVSS 90

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           ++P + +     GAW ++   R   F +MQVWD        ++  +++   +G +VEN V
Sbjct: 91  ISPGSATLLSSFGAWDHICNMRCRAFRRMQVWDACSEALIMFDKDNLDD--MGYIVENDV 148

Query: 173 LHSSLLSCMQNTEFQKTI-YPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
           +  +L   ++    Q T+ Y S+  S    P   S++ DS+P             + L D
Sbjct: 149 IMHALTKQLEAVSDQVTVLYKSKAVSYTW-PYPFSMA-DSSP----------WVHITLGD 196

Query: 232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 288
           G +L  KL +GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct: 197 GRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query: 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDM 348
           PIALLP+ D  S++VW+ + + A++  SM E++FV  +N A  +    H   I S    +
Sbjct: 257 PIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINSAF-WSDVNHTDFIDSAGSML 315

Query: 349 FSW--FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 405
            S   F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct: 316 QSAVAFLKPTRVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query: 406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 465
           HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct: 373 HPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETDRQRHNTALLAATDLLK 432

Query: 466 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
           + YS     + +LR         +SPLK  I+++AS
Sbjct: 433 RLYSTRATLVVLLRTWGLQATNAVSPLKEQIMAFAS 468

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q54EN1|COQ6_DICDI Ubiquinone biosynthesis monooxygenase COQ6 homolog OS=Dictyostelium discoideum GN=coq6 PE=3 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 247/485 (50%), Gaps = 38/485 (7%)

Query: 43  SEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK 102
           S    S  N D+ YD+ ++GGG+VG  +ACS+ +   TKHL VA+I+S+        I  
Sbjct: 25  STTTNSTINKDNIYDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISN 84

Query: 103 EDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQVWDYTGLGYTKYNARDV-- 159
              P+ R  +    TI  FK I  W  ++  +    F++++VWD +G     +   D+  
Sbjct: 85  A-IPEIRTISFNNQTIELFKSINVWDTIKSTKRVNPFNQVRVWDTSGFEGIHFQDNDIID 143

Query: 160 ---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216
              N   +G ++EN ++ SSLLS ++  E           ++ L    S  S++   +  
Sbjct: 144 DGNNTTAMGYIIENNIVTSSLLSKVKQFE-----------NIELFEQLSVKSMNDY-NEE 191

Query: 217 TLFTKGHLAKLDLSDGTSLYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVE--- 272
           T+ T   L  + LS+   L+AKL+ GADGG S +++     + G  Y+Q A++CT++   
Sbjct: 192 TIRTTSILPSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAVVCTLKLGI 251

Query: 273 -----------HNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDD 321
                      +N  N   +QRFLP GPIALLP+ + ++NI+W+ N   A     ++++ 
Sbjct: 252 KQDNNNNSSNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQYLLELDDES 311

Query: 322 FVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 381
           F++ +  +          S    + ++F+       LS  E + +PP +  L S+R  FP
Sbjct: 312 FLEQVKDSFLKSPSTSNSSFFEIASNLFNL--NPKGLSGNEIY-LPP-IEGLVSKRASFP 367

Query: 382 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 441
           L + H  NY   RV  IGDA+H VHP+AGQGVNLG  D  TLS II + +  G DIG+A 
Sbjct: 368 LRIDHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAM 427

Query: 442 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
           +LK++E  RKP N+ M+  +D     ++ +   +  LR         ISPLK  II  + 
Sbjct: 428 MLKRFEEIRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNNISPLKNLIIGVSK 487

Query: 502 GEQRL 506
           GE  L
Sbjct: 488 GESIL 492

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O01884|COQ6_CAEEL Probable ubiquinone biosynthesis monooxygenase coq-6 OS=Caenorhabditis elegans GN=coq-6 PE=3 SV=2

 Score =  215 bits (547), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 235/460 (51%), Gaps = 27/460 (5%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRV 110
           N    YD  +VGGGMVG A+ACSL +    +  SV ++D+  +   ++F K   P + RV
Sbjct: 13  NASSYYDTVIVGGGMVGNAMACSLGANKSFQSKSVLLLDAGRSPSLASF-KPGAPFNNRV 71

Query: 111 STVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVEN 170
              +P +I  FK++G W  +  HR    +++ V+D       ++      +E +  ++EN
Sbjct: 72  VATSPTSIDTFKKLGVWDQINSHRTKKVNRLFVFDSCSTSEIEFERGQ--QEEVAFIIEN 129

Query: 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
            ++  SL   +   E++             + + + +   S P+A       ++A + L 
Sbjct: 130 DLIVGSLYEKL--AEYKNVD----------VKTGAKVEDCSIPNALE-----NMATIKLE 172

Query: 231 DGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE---HNKENYCAWQRFLP 286
           +G  +   L +GADG  S+VR  +    T ++Y+Q+ ++  V     N +N  AWQRF  
Sbjct: 173 NGDVIETSLLIGADGVNSKVRHASNLDYTTFNYNQHGLVAIVNIETANGKNETAWQRFTT 232

Query: 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGS 345
            GP+ALLP+ D  S + W+ +P++A   K +  D FV  LN AL       P  + +  +
Sbjct: 233 LGPVALLPLSDTVSGLTWSTSPEEAQRLKQLPSDQFVDELNSALFSQNNQIPLVNQTIFA 292

Query: 346 VDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHT 404
           ++  + FR + T   K     PP V+ +  + R  FPL   +A++Y++ R  LIGDAAH 
Sbjct: 293 LNRMNPFRTE-TFGRKAEGTTPPHVITVQDKSRASFPLGFGNAHSYITTRCALIGDAAHR 351

Query: 405 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF 464
           +HPLAGQGVNLG+ D   L +++ + +  GADIG  + L++Y++  +  N+ +M  +D  
Sbjct: 352 MHPLAGQGVNLGWSDVQILDKVLGDAVREGADIGSITYLREYDSAAQKHNLPVMVSVDLL 411

Query: 465 QKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504
            + Y  D   +   RA   +    + P+K  +++Y S  +
Sbjct: 412 NRLYRTDAPAIVAARAFGLNAFNSLGPVKNFLMNYLSAHR 451

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P25535|VISC_ECOLI Protein VisC OS=Escherichia coli (strain K12) GN=visC PE=3 SV=2

 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 215/454 (47%), Gaps = 65/454 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           DVA+VGGGMVG+A+AC L        L VA+++          +    PP  RVS +  A
Sbjct: 5   DVAIVGGGMVGLAVACGLQG----SGLRVAVLEQRV----QEPLAANAPPQLRVSAINAA 56

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +      +G WQ +   R + +  M+VWD    G+  ++ + +    LG +VEN V+H +
Sbjct: 57  SEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYA 116

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           L +    +     + P+ L  +A   + + ++                    L DG+ L 
Sbjct: 117 LWNKAHQSSDITLLAPAELQQVAWGENETFLT--------------------LKDGSMLT 156

Query: 237 AKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRFLPAGPIALLP 294
           A+LV GADG  S +R  A    T W Y  +A++ T+   +  +  A Q F   G +A LP
Sbjct: 157 ARLVIGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLP 216

Query: 295 IGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
           + D +  +IVW+++P++A   +  +ED+F + LN A D   G                  
Sbjct: 217 LSDPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLG------------------ 258

Query: 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 413
                           + K+ S R VFPL+ ++A  + S R+ L+GDAAHT+HPLAGQGV
Sbjct: 259 ----------------LCKVESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQGV 302

Query: 414 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473
           NLGF DA+ L   +      G DIG+   L++YE  RK +  +M+A + GF+  +S    
Sbjct: 303 NLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGTNP 362

Query: 474 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLP 507
              +LR      A  +  +K  +I  A G   LP
Sbjct: 363 AKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLP 396

Not yet known.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P75728|UBIF_ECOLI 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase OS=Escherichia coli (strain K12) GN=ubiF PE=1 SV=1

 Score =  202 bits (514), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 213/452 (47%), Gaps = 74/452 (16%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIID-SNPALGKSNFIKKEDPPDPRVSTVTP 115
           ++A+VGGGMVG ALA  LA        +V +I+ + PA     F+  +  PD R+S ++ 
Sbjct: 7   EIAIVGGGMVGGALALGLAQ----HGFAVTVIEHAEPA----PFVA-DSQPDVRISAISA 57

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           A++S  K +G W  VQ  R   + +++ W++    +  ++A ++   +LG +VEN VL  
Sbjct: 58  ASVSLLKGLGVWDAVQAMRCHPYRRLETWEWE-TAHVVFDAAELKLPLLGYMVENTVLQQ 116

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
           +L   ++                    +   +++    S   L     L +L+L  G  +
Sbjct: 117 ALWQALE--------------------AHPKVTLRVPGSLIALHRHDDLQELELKGGEVI 156

Query: 236 YAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPAGPIALL 293
            AKLV GADG  S+VR++AG     W Y+Q+ ++ +V+  N      WQ+F P GP A L
Sbjct: 157 RAKLVIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFL 216

Query: 294 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
           P+ DN++++VW  +P      ++MN                                   
Sbjct: 217 PLFDNWASLVWYDSPARIRQLQNMNM---------------------------------- 242

Query: 354 GDATLSAKECFEVPPR---VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
             A L A+     P R   V  LA+    FPL+ +HA  YV   + L+GDAAHT+HPLAG
Sbjct: 243 --AQLQAEIAKHFPSRLGYVTPLAAG--AFPLTRRHALQYVQPGLALVGDAAHTIHPLAG 298

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470
           QGVNLG+ D   L  ++    + G       +LK+Y+  R   N +M + +D F   +S 
Sbjct: 299 QGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSN 358

Query: 471 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           +  PL  +R      A+    LKR  + YA G
Sbjct: 359 NLPPLRFMRNLGLMAAERAGVLKRQALKYALG 390

Oxygenase that introduces the hydroxyl group at carbon five of 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
255554178	515	monoxygenase, putative [Ricinus communis	0.988	0.986	0.746	0.0
359494703	525	PREDICTED: ubiquinone biosynthesis monoo	0.945	0.925	0.735	0.0
449524910	510	PREDICTED: ubiquinone biosynthesis monoo	0.986	0.994	0.734	0.0
449457604	510	PREDICTED: ubiquinone biosynthesis monoo	0.986	0.994	0.732	0.0
79416711	505	ubiquinone biosynthesis monooxygenase Co	0.976	0.994	0.701	0.0
297831190	505	monooxygenase [Arabidopsis lyrata subsp.	0.976	0.994	0.693	0.0
51968852	505	monooxygenase, putatve [Arabidopsis thal	0.976	0.994	0.699	0.0
79313357	507	ubiquinone biosynthesis monooxygenase Co	0.974	0.988	0.698	0.0
224057583	447	predicted protein [Populus trichocarpa]	0.863	0.993	0.815	0.0
357450969	509	Ubiquinone biosynthesis monooxygenase CO	0.984	0.994	0.685	0.0

>gi|255554178|ref|XP_002518129.1| monoxygenase, putative [Ricinus communis] gi|223542725|gb|EEF44262.1| monoxygenase, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/513 (74%), Positives = 431/513 (84%), Gaps = 5/513 (0%)

Query: 1   MNRIIVGRLSV----NVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQY 56
           MNR+I  + S     N    +V  R+FCS  A   + S+    ++E + KQS T+    Y
Sbjct: 1   MNRVIARKASAAAKDNAFKSKVPLRNFCSGAAAVNTPSSHNNNNNEDKDKQSSTHTVQPY 60

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+A+VGGGMVGMA  CSLA+ PLTKHL+VAIIDSNPALG    I +ED PDPRVSTVTPA
Sbjct: 61  DIAIVGGGMVGMAFTCSLATTPLTKHLNVAIIDSNPALGSKFSINREDSPDPRVSTVTPA 120

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           TISFFK+IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKY+ARD NK+ LGCVVENKVLHSS
Sbjct: 121 TISFFKDIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYSARDANKDNLGCVVENKVLHSS 180

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LLS +++T+FQKTIYPSRLT+M+L  SSSS  VDST SA  L+ KG LAKL+LS G+SLY
Sbjct: 181 LLSRVEDTDFQKTIYPSRLTTMSLHQSSSSTEVDSTSSAEALYIKGRLAKLELSAGSSLY 240

Query: 237 AKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPI 295
           AKLV GADGGKS+VRELAGFKTTGW+YSQNA+ICTVEH+ EN CAWQRFLP+GPIALLPI
Sbjct: 241 AKLVVGADGGKSQVRELAGFKTTGWNYSQNAVICTVEHSVENRCAWQRFLPSGPIALLPI 300

Query: 296 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 355
           GD FSNIVWTMNPK++SDCKSMNEDDFVK +NHALD+GYGPHPKS      +MF+W  G+
Sbjct: 301 GDKFSNIVWTMNPKESSDCKSMNEDDFVKAVNHALDHGYGPHPKSSLFDGANMFTWLSGN 360

Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
           + +SA E FEVPP+VVKLAS R+ FPLSL HA NY SKR+ LIGDAAHTVHPLAGQGVNL
Sbjct: 361 SVVSANESFEVPPKVVKLASARLAFPLSLMHAKNYTSKRIALIGDAAHTVHPLAGQGVNL 420

Query: 416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 475
           GFGDA  LSRIIAEGIAVG DIGE SLLKKYEAERKPAN+ MMA+LDGFQKAYSVD GPL
Sbjct: 421 GFGDAFALSRIIAEGIAVGTDIGEVSLLKKYEAERKPANVTMMAILDGFQKAYSVDLGPL 480

Query: 476 NILRAAAFHGAQYISPLKRNIISYASGEQRLPL 508
           NILRAAAFHGA +ISPLKR+IISYASGEQRLPL
Sbjct: 481 NILRAAAFHGAHHISPLKRSIISYASGEQRLPL 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494703|ref|XP_002269379.2| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Vitis vinifera]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/503 (73%), Positives = 416/503 (82%), Gaps = 17/503 (3%)

Query: 3   RIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVG 62
           R +  ++   V GL+V +R+FC+++A +    N G P           NN   YD+A+VG
Sbjct: 37  RAVAAKIPAEVCGLKVPRRTFCNNIAAREHEENQGLP-----------NNVVHYDIAIVG 85

Query: 63  GGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFK 122
           GGMVGMALACSLASMPLTK L+VAIIDSNPAL     IKKEDPPDPRVSTVTPATIS FK
Sbjct: 86  GGMVGMALACSLASMPLTKQLNVAIIDSNPALEGKTCIKKEDPPDPRVSTVTPATISLFK 145

Query: 123 EIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQ 182
           ++GAWQYVQQHRHAYFDKMQVWDYTGLGYT+YNARDV+KE+LGCVVENKVLHSSLLSC+Q
Sbjct: 146 DVGAWQYVQQHRHAYFDKMQVWDYTGLGYTRYNARDVDKEVLGCVVENKVLHSSLLSCIQ 205

Query: 183 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VG 241
           NT+ +K IYPSRL SM L  +     +DST S+        LAKL+LSDG SLYAKL VG
Sbjct: 206 NTDLKKRIYPSRLNSMTLHQNHLPTMMDSTSSS----LHASLAKLELSDGNSLYAKLVVG 261

Query: 242 ADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSN 301
           ADG KSRVREL GFKTTGW YSQNA+ICTVEH  EN CAWQRFLP+GPIALLP+GD FSN
Sbjct: 262 ADGAKSRVRELTGFKTTGWYYSQNAVICTVEHKTENQCAWQRFLPSGPIALLPVGDKFSN 321

Query: 302 IVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKS-ISSGSVDMFSWFRGDATLSA 360
           IVWTMNPK++S C+ MNE+DFVK LNHAL+YGYGPHP+S +   + D+FSWFR D T+SA
Sbjct: 322 IVWTMNPKESSACREMNENDFVKALNHALNYGYGPHPQSNLLGNNGDIFSWFRRDLTVSA 381

Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 420
            ECFEVPP VVKL S RMVFPLSL+HANNY SKRVVLIGDAAHTVHPLAGQGVNLGFGDA
Sbjct: 382 NECFEVPPDVVKLVSGRMVFPLSLRHANNYASKRVVLIGDAAHTVHPLAGQGVNLGFGDA 441

Query: 421 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 480
             LSRII+EGIAVG DIGE  LLKK+EAERK  NI+MMA+LDGFQKAYSVDFGPLN+LRA
Sbjct: 442 FALSRIISEGIAVGTDIGEVHLLKKFEAERKRENIMMMAILDGFQKAYSVDFGPLNVLRA 501

Query: 481 AAFHGAQYISPLKRNIISYASGE 503
           AAFHGAQYISPLKR+IISYASG+
Sbjct: 502 AAFHGAQYISPLKRSIISYASGQ 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524910|ref|XP_004169464.1| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Cucumis sativus]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/509 (73%), Positives = 423/509 (83%), Gaps = 2/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   L++NV G++   ++FCS  A K S SN      + E K    +N  Q+D+A+
Sbjct: 1   MNRLIRRNLTINVFGMKTRWKNFCSDSAAKVSGSNGNHSYVQGE-KPGSVDNFPQHDIAI 59

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALACSLASMPLTK LS+AIIDSNPAL     IKK  PPDPRVSTVTPATISF
Sbjct: 60  VGGGMVGMALACSLASMPLTKQLSIAIIDSNPALKGGASIKKGSPPDPRVSTVTPATISF 119

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
           F++I AW+YV++ RHAYFDKMQVWDYTGLGYTKY+ARDVNKE LGCVVENKVL SSLLS 
Sbjct: 120 FRDIDAWKYVEEQRHAYFDKMQVWDYTGLGYTKYHARDVNKEFLGCVVENKVLQSSLLSR 179

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q T+ Q TIY SRLTSM L PS S     +  S TTL   GHLAKLDLSDG+SLYAKLV
Sbjct: 180 VQCTDAQTTIYSSRLTSMDLHPSGSPTVAANISSKTTLNDPGHLAKLDLSDGSSLYAKLV 239

Query: 241 -GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
            GADG KSRVRELAGFKTTGW+YSQNA+ICTVEH +EN CAWQRFLP+GPIALLPIGDN+
Sbjct: 240 VGADGSKSRVRELAGFKTTGWNYSQNAVICTVEHTQENRCAWQRFLPSGPIALLPIGDNY 299

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTMNP++A+D KSM++DDFVK +N ALD  YGP P S   GS + FSW + D TLS
Sbjct: 300 SNIVWTMNPQEATDRKSMDQDDFVKDVNSALDSSYGPPPNSSIFGSQNFFSWLKPDVTLS 359

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
             E FEVPP+VVKLASERMVFPLSL HA NY SKRVVLIGDAAHTVHPLAGQGVNLGFGD
Sbjct: 360 VDEGFEVPPKVVKLASERMVFPLSLNHAKNYASKRVVLIGDAAHTVHPLAGQGVNLGFGD 419

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A +LS++IAEG+A+G+DIGE +L+KKYEAERKPANI MMA+LDGFQKAYSVDFGPLNILR
Sbjct: 420 AHSLSKVIAEGVALGSDIGEVTLMKKYEAERKPANIAMMAILDGFQKAYSVDFGPLNILR 479

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAAFHGA YISPLK++IISYASG+QRLPL
Sbjct: 480 AAAFHGANYISPLKKSIISYASGDQRLPL 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457604|ref|XP_004146538.1| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Cucumis sativus]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/509 (73%), Positives = 423/509 (83%), Gaps = 2/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   L++NV G++   ++FCS  A K S SN      + E K    +N  Q+D+A+
Sbjct: 1   MNRLIRRNLTINVFGMKTRWKNFCSDSAAKVSGSNGNHSYVQGE-KPGSVDNFPQHDIAI 59

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALACSLASMPLTK L++AIIDSNPAL     IKK  PPDPRVSTVTPATISF
Sbjct: 60  VGGGMVGMALACSLASMPLTKQLTIAIIDSNPALKGGASIKKGSPPDPRVSTVTPATISF 119

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
           F++I AW+YV++ RHAYFDKMQVWDYTGLGYTKY+ARDVNKE LGCVVENKVL SSLLS 
Sbjct: 120 FRDIDAWKYVEEQRHAYFDKMQVWDYTGLGYTKYHARDVNKEFLGCVVENKVLQSSLLSR 179

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q T+ Q TIY SRLTSM L PS S     +  S TTL   GHLAKLDLSDG+SLYAKLV
Sbjct: 180 VQCTDAQTTIYSSRLTSMDLHPSGSPTVAANISSKTTLNDPGHLAKLDLSDGSSLYAKLV 239

Query: 241 -GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
            GADG KSRVRELAGFKTTGW+YSQNA+ICTVEH +EN CAWQRFLP+GPIALLPIGDN+
Sbjct: 240 VGADGSKSRVRELAGFKTTGWNYSQNAVICTVEHTQENRCAWQRFLPSGPIALLPIGDNY 299

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTMNP++A+D KSM++DDFVK +N ALD  YGP P S   GS + FSW + D TLS
Sbjct: 300 SNIVWTMNPQEATDRKSMDQDDFVKDVNSALDSSYGPPPNSSIFGSQNFFSWLKPDVTLS 359

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
             E FEVPP+VVKLASERMVFPLSL HA NY SKRVVLIGDAAHTVHPLAGQGVNLGFGD
Sbjct: 360 VDEGFEVPPKVVKLASERMVFPLSLNHAKNYASKRVVLIGDAAHTVHPLAGQGVNLGFGD 419

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A +LS++IAEG+A+G+DIGE +L+KKYEAERKPANI MMA+LDGFQKAYSVDFGPLNILR
Sbjct: 420 AHSLSKVIAEGVALGSDIGEVTLMKKYEAERKPANIAMMAILDGFQKAYSVDFGPLNILR 479

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAAFHGA YISPLK++IISYASG+QRLPL
Sbjct: 480 AAAFHGANYISPLKKSIISYASGDQRLPL 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79416711|ref|NP_189062.3| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana] gi|332643350|gb|AEE76871.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/509 (70%), Positives = 419/509 (82%), Gaps = 7/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+
Sbjct: 1   MNRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL- 239
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKL 
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLV 236

Query: 240 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
           VGADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKF 296

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATIS 354

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A  LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LR
Sbjct: 415 ACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALR 474

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGEQSLPL 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831190|ref|XP_002883477.1| monooxygenase [Arabidopsis lyrata subsp. lyrata] gi|297329317|gb|EFH59736.1| monooxygenase [Arabidopsis lyrata subsp. lyrata]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/509 (69%), Positives = 422/509 (82%), Gaps = 7/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   LS NV G RVL+R+  + V  + SSS S    +ES   ++ T++  Q+D+A+
Sbjct: 1   MNRVLARNLSKNVCGTRVLRRTCSTVVTHEVSSSGS----NESNAIRNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K  PPDPRVSTVTPAT+SF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRKNIIEKGHPPDPRVSTVTPATLSF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y+++ RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEEQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL- 239
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS+T LF +G LAKL+LSDG  +YAKL 
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSSTDLFMRGRLAKLELSDGNHVYAKLV 236

Query: 240 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
           VGADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTVENYTAWQRFLPNGPIALLPIGDKF 296

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GD+T+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSP--DSLSWLTGDSTIS 354

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A  LS+ I+EGIA+G DIGE++LLK+YEA+RKPANI MMAVLDG QK YSV+FGPLN LR
Sbjct: 415 ACALSKAISEGIALGTDIGESNLLKRYEADRKPANIAMMAVLDGIQKMYSVNFGPLNALR 474

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAAFHGA YISPLK+ IISYASG+Q LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGDQSLPL 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968852|dbj|BAD43118.1| monooxygenase, putatve [Arabidopsis thaliana]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/509 (69%), Positives = 418/509 (82%), Gaps = 7/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+
Sbjct: 1   MNRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL- 239
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKL 
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTGLFMRGRLAKLELSDGNRVYAKLV 236

Query: 240 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
           VGADG KSRVRELAG KTTGW+YSQNAIICTVE   ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEDTAENYTAWQRFLPNGPIALLPIGDKF 296

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATIS 354

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A  LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LR
Sbjct: 415 ACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALR 474

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGEQSLPL 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313357|ref|NP_001030758.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana] gi|332643351|gb|AEE76872.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/508 (69%), Positives = 418/508 (82%), Gaps = 7/508 (1%)

Query: 2   NRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVV 61
           +R++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+V
Sbjct: 4   DRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAIV 59

Query: 62  GGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF 121
           GGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF 
Sbjct: 60  GGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119

Query: 122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM 181
           K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC+
Sbjct: 120 KDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSCV 179

Query: 182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-V 240
           Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKL V
Sbjct: 180 QESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVV 239

Query: 241 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFS 300
           GADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD FS
Sbjct: 240 GADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKFS 299

Query: 301 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 360
           NIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+SA
Sbjct: 300 NIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATISA 357

Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 420
           KE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF DA
Sbjct: 358 KERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADA 417

Query: 421 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 480
             LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LRA
Sbjct: 418 CALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRA 477

Query: 481 AAFHGAQYISPLKRNIISYASGEQRLPL 508
           AAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 478 AAFHGAHYISPLKKRIISYASGEQSLPL 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057583|ref|XP_002299279.1| predicted protein [Populus trichocarpa] gi|222846537|gb|EEE84084.1| predicted protein [Populus trichocarpa]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/445 (81%), Positives = 394/445 (88%), Gaps = 1/445 (0%)

Query: 65  MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI 124
           MVGMALACSLA+ PLTKHLSVAIIDS+PAL     IK+EDPPDPRVSTVTPATISFFK+ 
Sbjct: 1   MVGMALACSLATTPLTKHLSVAIIDSSPALANKPCIKREDPPDPRVSTVTPATISFFKDT 60

Query: 125 GAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT 184
           GAWQYVQQHRHAYFDKMQVWDYTGLGYTKY+ARDV+KE+LGCVVENKVLHSSLLS +++T
Sbjct: 61  GAWQYVQQHRHAYFDKMQVWDYTGLGYTKYDARDVDKEVLGCVVENKVLHSSLLSRIEDT 120

Query: 185 EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV-GAD 243
           +FQK IY SRLTSM+L PSSSSI VDST S    + +G LAKL+LSDG SLYAKLV G+D
Sbjct: 121 DFQKKIYHSRLTSMSLNPSSSSIVVDSTASTEASYARGRLAKLELSDGNSLYAKLVVGSD 180

Query: 244 GGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV 303
           GGKS+VRELAGFKTTGW YSQNA+ICTVEH+ ENY AWQRFLPAGPIALLPIGD FSNIV
Sbjct: 181 GGKSQVRELAGFKTTGWKYSQNAVICTVEHSVENYSAWQRFLPAGPIALLPIGDKFSNIV 240

Query: 304 WTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC 363
           WTMNP+++SD KSM EDDFVK +NHALDYGYGPH KS   GS  MFSW  G+ T+ A E 
Sbjct: 241 WTMNPEESSDFKSMKEDDFVKAVNHALDYGYGPHHKSSLPGSAGMFSWLGGNVTIFANES 300

Query: 364 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 423
           FE+PP+VVKLASERM FPLSL HAN Y SKRVVLIGDAAHTVHPLAGQGVNLGFGDA  L
Sbjct: 301 FEIPPKVVKLASERMAFPLSLMHANEYASKRVVLIGDAAHTVHPLAGQGVNLGFGDAFAL 360

Query: 424 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 483
           SRIIAEGIAVG DIGE SLLKKYEAERK AN+ MMA+LDGFQKAYSVDFGPLNILRAAAF
Sbjct: 361 SRIIAEGIAVGMDIGEVSLLKKYEAERKLANMTMMAILDGFQKAYSVDFGPLNILRAAAF 420

Query: 484 HGAQYISPLKRNIISYASGEQRLPL 508
           HGA +ISPLKR+IISYASGEQRLPL
Sbjct: 421 HGAHFISPLKRSIISYASGEQRLPL 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450969|ref|XP_003595761.1| Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula] gi|355484809|gb|AES66012.1| Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula]

 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/509 (68%), Positives = 422/509 (82%), Gaps = 3/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   +S NV  L++ ++ FCS  A K  +S +  PS+E E K   +    +YDVA+
Sbjct: 1   MNRVIKKTVS-NVFALKIPRKCFCSQ-AVKVDASTNLLPSNEHEKKPIISQIIPEYDVAI 58

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALAC LA MP+TK LSVAIIDSNPAL     IKKEDPPDPRVSTVTPA+ISF
Sbjct: 59  VGGGMVGMALACFLACMPMTKQLSVAIIDSNPALSSGLCIKKEDPPDPRVSTVTPASISF 118

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            +E GAW+YV+Q+RHAYF KMQVWDYTG GY +Y+A DVNK+ LGCV ENKVLHSSLLSC
Sbjct: 119 LQEAGAWKYVEQNRHAYFKKMQVWDYTGFGYARYDAGDVNKDFLGCVAENKVLHSSLLSC 178

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +++++F+ T YPSRLTSM L  +S S+  ++TPS      +GH +KL+LSDG+S+YAKLV
Sbjct: 179 IKDSDFKTTFYPSRLTSMTLNTNSMSVVEENTPSKEPSPAQGHASKLELSDGSSIYAKLV 238

Query: 241 -GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 299
            GADGGKSRVRELAGFKTTGW+YSQNAIICTVEH   N+CAWQRFLP GPIALLP+G+NF
Sbjct: 239 VGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCAWQRFLPNGPIALLPMGENF 298

Query: 300 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 359
           SNIVWTM+P +++D KS+ E+ F+K +N ALDYGYGPHP S S G+ D+FSW + D TLS
Sbjct: 299 SNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSLGARDIFSWLKMDGTLS 358

Query: 360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419
           A E FE+PP+ ++LASERMVFPLSL+HAN+Y +KRVVLIGDAAHT+HPLAGQGVNLGFGD
Sbjct: 359 ANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGD 418

Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 479
           A +LSR+IAEGIA+G+DIGE +LLKKYE ERKPAN+ MMA+LDGFQKAYS+DFGP N LR
Sbjct: 419 AYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGPFNFLR 478

Query: 480 AAAFHGAQYISPLKRNIISYASGEQRLPL 508
            AAF GA ++SPLKR+IISYASGE++LP+
Sbjct: 479 GAAFRGANFVSPLKRSIISYASGERKLPI 507

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2093731	507	AT3G24200 "AT3G24200" [Arabido	0.974	0.988	0.647	1.3e-173
UNIPROTKB|F1PBF7	469	COQ6 "Uncharacterized protein"	0.832	0.912	0.333	5e-60
MGI|MGI:1924408	476	Coq6 "coenzyme Q6 homolog (yea	0.832	0.899	0.333	2.7e-59
UNIPROTKB|Q9Y2Z9	468	COQ6 "Ubiquinone biosynthesis	0.842	0.925	0.327	7.3e-59
RGD|1311149	476	Coq6 "coenzyme Q6 homolog, mon	0.838	0.905	0.328	7.3e-59
UNIPROTKB|F1S3H4	476	COQ6 "Uncharacterized protein"	0.836	0.903	0.323	1.9e-58
UNIPROTKB|Q2KIL4	469	COQ6 "Ubiquinone biosynthesis	0.832	0.912	0.331	1.1e-57
ZFIN|ZDB-GENE-060825-297	484	coq6 "coenzyme Q6 homolog, mon	0.852	0.904	0.297	5.3e-56
DICTYBASE|DDB_G0291440	495	coq6 "monooxygenase" [Dictyost	0.856	0.888	0.315	3.5e-52
UNIPROTKB|F1NBR7	470	COQ6 "Uncharacterized protein"	0.846	0.925	0.306	1.9e-51

TAIR|locus:2093731 AT3G24200 "AT3G24200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1687 (598.9 bits), Expect = 1.3e-173, P = 1.3e-173
 Identities = 329/508 (64%), Positives = 381/508 (75%)

Query:     2 NRIIVGRLSVNVSGLRVLQRXXXXXXXXXXXXXXXXXXXXXXEVKQSFTNNDDQYDXXXX 61
             +R++   L  +V G R+LQR                          + T++  Q+D    
Sbjct:     4 DRVLARNLRTSVCGTRILQRTCSTVVTHDVSTSCSNESNAL----NNSTDDGPQHDIAIV 59

Query:    62 XXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF 121
                     LA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF 
Sbjct:    60 GGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119

Query:   122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM 181
             K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC+
Sbjct:   120 KDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSCV 179

Query:   182 QNTEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSDGTSLYAKLV- 240
             Q ++ QKT+YP+R                       LF +G LAKL+LSDG  +YAKLV 
Sbjct:   180 QESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVV 239

Query:   241 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFS 300
             GADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD FS
Sbjct:   240 GADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKFS 299

Query:   301 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 360
             NIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+SA
Sbjct:   300 NIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATISA 357

Query:   361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 420
             KE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF DA
Sbjct:   358 KERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADA 417

Query:   421 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 480
               LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LRA
Sbjct:   418 CALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRA 477

Query:   481 AAFHGAQYISPLKRNIISYASGEQRLPL 508
             AAFHGA YISPLK+ IISYASGEQ LPL
Sbjct:   478 AAFHGAHYISPLKKRIISYASGEQSLPL 505

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1PBF7 COQ6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 152/456 (33%), Positives = 239/456 (52%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K  + K  +    RVS+
Sbjct:    34 DAVYDVVVSGGGLVGAAMACALGYNIHFHDKKILLLEAGP---KKVWEKLPETYSNRVSS 90

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    91 ISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 148

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + T+ Y S+                      T+        + L D
Sbjct:   149 IMRALTKQLEAASDRVTVLYRSKAVGYTWPYPF------------TMADSSPWVHITLGD 196

Query:   232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 288
             G++L  KL VGADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   197 GSTLQTKLLVGADGHNSGVRQAAGIQNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query:   289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-SSGSVD 347
             PIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   I S+G++ 
Sbjct:   257 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAF-WSDANHTDFIDSAGAML 315

Query:   348 MFSW-FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 405
              ++  F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct:   316 QYAVAFLKPTKVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query:   406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 465
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   373 HPLAGQGVNMGFGDVSSLVHHLSAAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLK 432

Query:   466 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             + YS    PL +LR         +SPLK  I+++AS
Sbjct:   433 RLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 468

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

MGI|MGI:1924408 Coq6 "coenzyme Q6 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 152/456 (33%), Positives = 231/456 (50%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    41 DTVYDVVVSGGGLVGSAMACALGHDIHFHDKKILLLEAGP---KKALEKLSETYSNRVSS 97

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R   F +MQVWD        ++ RD N + +G +VEN V
Sbjct:    98 ISPGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFD-RD-NLDDMGYIVENDV 155

Query:   173 LHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + K +Y S+                            H+    L D
Sbjct:   156 IMYALTKQLEAVADRVKVLYESKAVGYSWPGAFSMADSSPWV---------HIT---LGD 203

Query:   232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 288
             G++L  KL +GADG KS VR+ AG +   W Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   204 GSTLQTKLLIGADGHKSGVRQAAGIQNVSWKYDQSAVVATLHLSEATENNVAWQRFLPSG 263

Query:   289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS--V 346
             PIALLP+ D  S++VW+ + + A++  SM+E++FV  +N A  +    H   + S S  V
Sbjct:   264 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEEFVDAINSAF-WSDVHHTDFVDSASAMV 322

Query:   347 DMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 405
                        +SA++   +PP + K+ A  R +FPL L HA  YV  RV LIGDAAH +
Sbjct:   323 RHAVALLKPTKVSARQ---LPPSIAKVDAKSRALFPLGLGHAAEYVRPRVALIGDAAHRI 379

Query:   406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 465
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   380 HPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLK 439

Query:   466 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             + YS    PL +LR         +SPLK  I+++AS
Sbjct:   440 RLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0003674 "molecular_function" evidence=ND

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9Y2Z9 COQ6 "Ubiquinone biosynthesis monooxygenase COQ6" [Homo sapiens (taxid:9606)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 151/461 (32%), Positives = 238/461 (51%)

Query:    48 SFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPD 107
             S  + D  YD            +AC+L          + ++++ P   K    K  +   
Sbjct:    28 SGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGP---KKVLEKLSETYS 84

Query:   108 PRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV 167
              RVS+++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +
Sbjct:    85 NRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYI 142

Query:   168 VENKVLHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAK 226
             VEN V+  +L   ++    + T+ Y S+                            H+  
Sbjct:   143 VENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMADSSPWV---------HIT- 192

Query:   227 LDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQR 283
               L DG++   KL +GADG  S VR+  G +   W+Y Q+A++ T+  ++  EN  AWQR
Sbjct:   193 --LGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENNVAWQR 250

Query:   284 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-S 342
             FLP+GPIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   I +
Sbjct:   251 FLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAF-WSDADHTDFIDT 309

Query:   343 SGSVDMFSWFRGDAT-LSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGD 400
             +G++  ++      T +SA++   +PP V ++ A  R++FPL L HA  YV  RV LIGD
Sbjct:   310 AGAMLQYAVSLLKPTKVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGD 366

Query:   401 AAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 460
             AAH VHPLAGQGVN+GFGD S+L+  ++     G D+G  S L  YE ER+  N  ++A 
Sbjct:   367 AAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAA 426

Query:   461 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
              D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct:   427 TDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFAS 467

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

RGD|1311149 Coq6 "coenzyme Q6 homolog, monooxygenase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 151/459 (32%), Positives = 233/459 (50%)

Query:    50 TNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPR 109
             ++ D  YD            +AC+L          + ++++ P   K    K  +    R
Sbjct:    38 SSTDSVYDVVVSGGGMVGSAMACALGHDIHFHDKKILLLEAGP---KKTLEKLSETYSNR 94

Query:   110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
             VS+++  + +     GAW ++   R   F +MQVWD        ++ +D N + +G +VE
Sbjct:    95 VSSISLGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFD-KD-NLDDMGYIVE 152

Query:   170 NKVLHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLD 228
             N V+  ++   ++    + K +Y S+                      +L        + 
Sbjct:   153 NDVIMHAITKQLEAVADRVKVLYESKAVGYAWPGPF------------SLADSSPWVHIT 200

Query:   229 LSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFL 285
             L DG++L  KL +GADG  S VR+ AG +  GW+Y Q+A++ T+  ++  EN  AWQRFL
Sbjct:   201 LGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVATLHLSEATENNVAWQRFL 260

Query:   286 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 345
             P+GPIALLP+ D  S++VW+ +   A++  SM+E++FV  +N A  +    H   + S S
Sbjct:   261 PSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAINSAF-WSDVHHTDFVDSAS 319

Query:   346 --VDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAA 402
               V           +SA++   +PP V K+ A  R +FPL L HA  YV  RV LIGDAA
Sbjct:   320 AMVHHAVALLKPTKVSARQ---LPPSVAKVDAKSRALFPLGLGHAAEYVRPRVALIGDAA 376

Query:   403 HTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 462
             H VHPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D
Sbjct:   377 HRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATD 436

Query:   463 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
               ++ YS    PL +LR         +SPLK  I+++AS
Sbjct:   437 LLKRLYSTSTTPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1S3H4 COQ6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 147/454 (32%), Positives = 229/454 (50%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    41 DTVYDVVVSGGGMVGAAMACALGHDIHFGDKKILLLEAGP---KKVLGKLPETYSNRVSS 97

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    98 ISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 155

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + T+ Y S+                            H+    L D
Sbjct:   156 IMQALTKQLEAVSDRVTVLYKSKAVSYTWPYPFSMADSSPWV---------HIT---LGD 203

Query:   232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 288
             G++L  KL +GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   204 GSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLSEPTENNVAWQRFLPSG 263

Query:   289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDM 348
             PIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   + S S  +
Sbjct:   264 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAF-WSDANHTDLVDSAS-SV 321

Query:   349 FSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
               +       +     ++PP V K+ A  +++FPL L HA  YV  R+ LIGDAAH VHP
Sbjct:   322 LHYVVSILKPTKVSARQLPPSVAKVDAKSQVLFPLGLGHAAEYVRPRLALIGDAAHRVHP 381

Query:   408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
             LAGQGVN+GFGD S+L   +      G D+G  S L  YE +R+  N  ++A  D  ++ 
Sbjct:   382 LAGQGVNMGFGDISSLVHHLRTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLKRL 441

Query:   468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             YS    PL +LR         +SPLK  I+++AS
Sbjct:   442 YSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

UNIPROTKB|Q2KIL4 COQ6 "Ubiquinone biosynthesis monooxygenase COQ6" [Bos taurus (taxid:9913)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 151/456 (33%), Positives = 234/456 (51%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D+ YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    34 DNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGP---KKVLEKLPETYSNRVSS 90

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R   F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    91 ISPGSATLLSSFGAWDHICNMRCRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 148

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    Q T+ Y S+                            H+    L D
Sbjct:   149 IMHALTKQLEAVSDQVTVLYKSKAVSYTWPYPFSMADSSPWV---------HIT---LGD 196

Query:   232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 288
             G +L  KL +GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   197 GRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query:   289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-SSGSVD 347
             PIALLP+ D  S++VW+ + + A++  SM E++FV  +N A  +    H   I S+GS+ 
Sbjct:   257 PIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINSAF-WSDVNHTDFIDSAGSML 315

Query:   348 MFSW-FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 405
               +  F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct:   316 QSAVAFLKPTRVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query:   406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 465
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   373 HPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETDRQRHNTALLAATDLLK 432

Query:   466 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             + YS     + +LR         +SPLK  I+++AS
Sbjct:   433 RLYSTRATLVVLLRTWGLQATNAVSPLKEQIMAFAS 468

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

ZFIN|ZDB-GENE-060825-297 coq6 "coenzyme Q6 homolog, monooxygenase (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 137/461 (29%), Positives = 233/461 (50%)

Query:    46 KQSFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
             + S T+ ++ +D            +ACSL   P      + ++++     +    K  + 
Sbjct:    41 QDSSTSENELFDIIISGGGMVGTAMACSLGLDPNLTGKKILLLEAGH---EKKMDKIPET 97

Query:   106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
                RVS+++P + +    +GAW ++   R   ++KMQVWD        ++  ++  E + 
Sbjct:    98 YSTRVSSISPGSATLLSGLGAWDHIVNMRCKPYNKMQVWDACSDALITFDKENLQDE-MA 156

Query:   166 CVVENKVLHSSLLSCMQN-TEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHL 224
              +VEN V+ ++L   +Q  ++  K  Y ++                              
Sbjct:   157 YIVENDVIVAALTKQLQTLSDHVKVQYRTKVVKYTWPHPYHVSESIPW------------ 204

Query:   225 AKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAW 281
              ++ L++G +L+ KL +GADG  S VR  AG  T  W+Y Q+A++  +  ++  EN  AW
Sbjct:   205 VQVALANGKTLHTKLLIGADGPNSMVRREAGIPTVKWNYDQSAVVAVLHLSEPTENNVAW 264

Query:   282 QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI 341
             QRFLP GPIA+LP+ D  S++VW+ + + A +   M+E+ FV  +N A  +    H + +
Sbjct:   265 QRFLPTGPIAMLPLSDTESSLVWSTSHQHAEELLQMDEESFVDAINSAF-WSNENHSELV 323

Query:   342 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGD 400
              +    +F          +    ++PP V  +  + R++FPL + HA  Y+  RV LIGD
Sbjct:   324 ETAG-SLFRMALSVLMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEYIRHRVALIGD 382

Query:   401 AAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 460
             AAH VHPLAGQG NLGFGD S L++++++    G DIG    L ++E ER+  N+ MM  
Sbjct:   383 AAHRVHPLAGQGANLGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETERQRHNLPMMTA 442

Query:   461 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             +D  ++ YS +  P+ +LR         + PLK  I+++AS
Sbjct:   443 IDLMKRLYSSNTAPMVLLRTFGLQATNAVPPLKEQIMAFAS 483

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

DICTYBASE|DDB_G0291440 coq6 "monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 152/482 (31%), Positives = 232/482 (48%)

Query:    48 SFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPD 107
             S  N D+ YD            +ACS+ +   TKHL VA+I+S+        I    P +
Sbjct:    30 STINKDNIYDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISNAIP-E 88

Query:   108 PRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQVWDYTGLGYTKYNARDV-----NK 161
              R  +    TI  FK I  W  ++  +    F++++VWD +G     +   D+     N 
Sbjct:    89 IRTISFNNQTIELFKSINVWDTIKSTKRVNPFNQVRVWDTSGFEGIHFQDNDIIDDGNNT 148

Query:   162 EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTK 221
               +G ++EN ++ SSLLS ++  +F+                             T+ T 
Sbjct:   149 TAMGYIIENNIVTSSLLSKVK--QFENI----------ELFEQLSVKSMNDYNEETIRTT 196

Query:   222 GHLAKLDLSDGTSLYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVE-------- 272
               L  + LS+   L+AKL+ GADGG S +++     + G  Y+Q A++CT++        
Sbjct:   197 SILPSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAVVCTLKLGIKQDNN 256

Query:   273 ------HNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKIL 326
                   +N  N   +QRFLP GPIALLP+ + ++NI+W+ N   A     ++++ F   L
Sbjct:   257 NNSSNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQYLLELDDESF---L 313

Query:   327 NHALDYGYGPHPKSISSGSVDMFS-WFR-GDATLSAKECFEVPPRVVKLASERMVFPLSL 384
                 D  +   P + +S   ++ S  F      LS  E + +PP +  L S+R  FPL +
Sbjct:   314 EQVKD-SFLKSPSTSNSSFFEIASNLFNLNPKGLSGNEIY-LPP-IEGLVSKRASFPLRI 370

Query:   385 KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 444
              H  NY   RV  IGDA+H VHP+AGQGVNLG  D  TLS II + +  G DIG+A +LK
Sbjct:   371 DHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAMMLK 430

Query:   445 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504
             ++E  RKP N+ M+  +D     ++ +   +  LR         ISPLK  II  + GE 
Sbjct:   431 RFEEIRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNNISPLKNLIIGVSKGES 490

Query:   505 RL 506
              L
Sbjct:   491 IL 492

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

UNIPROTKB|F1NBR7 COQ6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 141/460 (30%), Positives = 223/460 (48%)

Query:    47 QSFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP 106
             +S T+    YD            +A +L          +A++++ P   +  +   E   
Sbjct:    30 RSLTSAAPLYDVVVSGGGMVGSAMAAALGHDIHFHDKKIALLEAGP---RKEYHLPESYS 86

Query:   107 DPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGC 166
             + RVS+++P + +     GAW +V   R   F +MQVWD        +   D++   +G 
Sbjct:    87 N-RVSSISPGSATLLSSFGAWDHVCNLRCKPFRRMQVWDACSEAIITFEKDDLDD--MGY 143

Query:   167 VVENKVLHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLA 225
             +VEN V+ S++   +     + +  Y SR                               
Sbjct:   144 IVENDVVMSAVTKQLDAVADRVEVFYGSRAVGYTWPLPSHSCDTSPW------------V 191

Query:   226 KLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQ 282
             +++L+DG  L  KL +GADG  S VR+ A  +     Y Q+A++ T+  ++  +N  AWQ
Sbjct:   192 QVELADGRRLQTKLLIGADGHNSVVRKEAEIQNIEHQYDQSAVVATLHLSEATDNNVAWQ 251

Query:   283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSIS 342
             RFLP GPIALLP+ D  S++VW+ + + AS+  +M+++ FV  +N A  +    H   I 
Sbjct:   252 RFLPTGPIALLPLSDTASSLVWSTSHEHASELLTMDKESFVDSINSAF-WSNVNHSDFID 310

Query:   343 SGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDA 401
             +    MF         S     ++PP V  +  E R VFPL + HA  YV  RV LIGDA
Sbjct:   311 AAGA-MFRSALSLLKPSGTAVRQLPPSVANVDPESRAVFPLGMGHATEYVRHRVALIGDA 369

Query:   402 AHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL 461
             AH VHPLAGQGVNLGFGD + L+  ++     G D+G    L ++E ER+  N+ ++  +
Sbjct:   370 AHRVHPLAGQGVNLGFGDIACLTHHLSAAAFNGQDLGSLKHLLRFETERQRHNVSLIGAI 429

Query:   462 DGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501
             D  ++ YS    PL +LR         + P+K  I+++AS
Sbjct:   430 DLLKRLYSTSLSPLVLLRTWGLQATNALPPVKEQIMAFAS 469

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68FU7	COQ6_RAT	1, ., 1, 4, ., 1, 3, ., -	0.3520	0.8463	0.9138	yes	no
Q2KIL4	COQ6_BOVIN	1, ., 1, 4, ., 1, 3, ., -	0.3530	0.8326	0.9125	yes	no
P53318	COQ6_YEAST	1, ., 1, 4, ., 1, 3, ., -	0.3059	0.8287	0.8893	yes	no
Q9Y2Z9	COQ6_HUMAN	1, ., 1, 4, ., 1, 3, ., -	0.3426	0.8443	0.9273	yes	no
Q8R1S0	COQ6_MOUSE	1, ., 1, 4, ., 1, 3, ., -	0.3477	0.8891	0.9600	yes	no
F1RAX8	COQ6_DANRE	1, ., 1, 4, ., 1, 3, ., -	0.3254	0.8929	0.9483	yes	no
Q6DF46	COQ6_XENTR	1, ., 1, 4, ., 1, 3, ., -	0.3458	0.8249	0.9137	yes	no
Q54EN1	COQ6_DICDI	1, ., 1, 4, ., 1, 3, ., -	0.3237	0.8696	0.9030	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	1e-169
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-143
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	3e-77
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	1e-75
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	2e-74
PRK08850	405	PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol h	6e-74
PRK05714	405	PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methox	3e-73
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	3e-72
PRK08849	384	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methox	3e-68
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	5e-68
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	6e-65
PRK08013	400	PRK08013, PRK08013, oxidoreductase; Provisional	1e-64
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	3e-63
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	7e-58
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	9e-43
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	1e-41
PRK06996	398	PRK06996, PRK06996, hypothetical protein; Provisio	1e-35
PRK06617	374	PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl h	2e-29
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	1e-14
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	2e-14
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	6e-13
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	3e-10
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	6e-10
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-09
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	3e-08
PRK08255	765	PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; R	3e-07
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	7e-07
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	2e-06
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	5e-06
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	1e-05
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-05
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	4e-05
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	1e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	2e-04
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	5e-04
TIGR02028	398	TIGR02028, ChlP, geranylgeranyl reductase	6e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	6e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	6e-04
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	7e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	0.001
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.003
pfam08491	276	pfam08491, SE, Squalene epoxidase	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.003
PRK06481	506	PRK06481, PRK06481, fumarate reductase flavoprotei	0.003

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score =  483 bits (1246), Expect = e-169
 Identities = 202/451 (44%), Positives = 279/451 (61%), Gaps = 23/451 (5%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS--NPALGKSNFIKKEDPPDPRVSTV 113
           +DV +VGGG VG+ALA +L + PLTK L V ++D+  NP L   N+ K + P   RVS++
Sbjct: 1   FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSI 60

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           TPA+ISFFK+IGAW ++Q  R   F +MQVWD   L   ++  RD  KE + C++EN  +
Sbjct: 61  TPASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRF-DRDNGKEDMACIIENDNI 119

Query: 174 HSSLLSCMQ--NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
            +SL + +Q  N +  K + P+RL S+ + PS       +               + LSD
Sbjct: 120 QNSLYNRLQEYNGDNVKILNPARLISVTI-PSKYPNDNSN------------WVHITLSD 166

Query: 232 GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH--NKENYCAWQRFLPAG 288
           G  LY KL +GADG  S VR+ A   TTGW+Y+Q+A++ T++     EN  AWQRFLP G
Sbjct: 167 GQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG 226

Query: 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG-SVD 347
           PIALLP+ DN S +VW+ +P++A    S+  +DFV  LN A D GY  HP S     +++
Sbjct: 227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAME 286

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHTVH 406
             +   G  T  +K CF+VPPRV+ +  + R  FPL L HA+ YV+KRV L+GDAAH VH
Sbjct: 287 KLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVH 346

Query: 407 PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQK 466
           PLAGQGVNLGFGD ++L + +AE ++VGADIG  S LK YE ER   N+V++ ++D   K
Sbjct: 347 PLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHK 406

Query: 467 AYSVDFGPLNILRAAAFHGAQYISPLKRNII 497
            Y+ DF P+  LR    +   YI PLK  I+
Sbjct: 407 LYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score =  416 bits (1072), Expect = e-143
 Identities = 153/449 (34%), Positives = 220/449 (48%), Gaps = 65/449 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ +VGGG VG+ALA +LA       L VA+I++ P          +   D RVS ++ A
Sbjct: 1   DIVIVGGGPVGLALALALARSG---GLKVALIEATPLPAP-----ADPGFDNRVSALSAA 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +I   +++G W  ++  R      + V D    G   ++A ++  E LG VVEN+VL  +
Sbjct: 53  SIRLLEKLGVWDKIEPARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQA 112

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP-SATTLFTKGHLAKLDLSDGTSL 235
           L   +Q    + TI                      P     L       +L L DG  L
Sbjct: 113 LWERLQELPNRVTIL--------------------CPARVVELPRHSDHVELTLDDGQQL 152

Query: 236 YAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-NKENYCAWQRFLPAGPIALL 293
            A+L VGADG  S+VR+LAG  TTGW Y Q+A++  V+H       AW+RF P GP+ALL
Sbjct: 153 RARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALL 212

Query: 294 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
           P+ DN S++VWT+ P++A    ++++++F+  L  A     G                  
Sbjct: 213 PLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGA----------------- 255

Query: 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 413
                            + L  ER  FPLSL HA  YV+ R+ LIGDAAHT+HPLAGQG+
Sbjct: 256 -----------------ITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 298

Query: 414 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473
           NLG  D + L+ ++ +    G DIG   +L++YE  R+  N  M+   DG  + +S DF 
Sbjct: 299 NLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFP 358

Query: 474 PLNILRAAAFHGAQYISPLKRNIISYASG 502
           PL +LR         + PLK  I   A G
Sbjct: 359 PLRLLRNLGLRLLNNLPPLKNFIAKQAMG 387

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  247 bits (632), Expect = 3e-77
 Identities = 127/452 (28%), Positives = 190/452 (42%), Gaps = 71/452 (15%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
              DVA+VG G  G+ALA +LA   L     V +++  P          E     R   +
Sbjct: 1   KMLDVAIVGAGPAGLALALALARAGL----DVTLLERAPR---------ELLERGRGIAL 47

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           +P  +   + +G W  ++         M V D  G     ++A ++ +  LG VV    L
Sbjct: 48  SPNALRALERLGLWDRLEALGVPPLHVMVVDD-GGRRLLIFDAAELGRGALGYVVPRSDL 106

Query: 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT 233
            ++LL   +        + + + ++       ++++                     DG 
Sbjct: 107 LNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-------------------DGE 147

Query: 234 SLYAKL-VGADGGKSRVRELAGFKTT-GWSYSQNAIICTVEHNKE-NYCAWQRFLPAGPI 290
           +L A L VGADG  S VR  AG     G  Y Q A++  VE  +     A +RF  AGP 
Sbjct: 148 TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPF 207

Query: 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
           ALLP+ DN S++VW++ P  A D + +++++F++ L   L                    
Sbjct: 208 ALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLG------------------- 248

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
                           P   V L S R  FPLSL+ A  Y   RVVLIGDAAH +HPLAG
Sbjct: 249 -------------ERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAG 295

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470
           QG NL   DA+ L+  +A     GAD   A+ L  YEA R+P    +  +     + +S 
Sbjct: 296 QGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSA 352

Query: 471 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           D      LR         + PL+  +   A+G
Sbjct: 353 DGPFARFLRNLGLRLLDRLPPLREALARLAAG 384

Length = 387

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score =  243 bits (622), Expect = 1e-75
 Identities = 129/455 (28%), Positives = 212/455 (46%), Gaps = 68/455 (14%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID-SNPALGKSNFIKKEDPPDPR 109
             +   D+A+VGGGMVG ALA  LA        SVA+++ + PA         +  PD R
Sbjct: 1   MTNQPTDIAIVGGGMVGAALALGLAQ----HGFSVAVLEHAAPAP-----FDADSQPDVR 51

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
           +S ++ A+++  K +G W  VQ  R   + +++ W++    +  ++A ++    LG +VE
Sbjct: 52  ISAISAASVALLKGLGVWDAVQAMRSHPYRRLETWEWET-AHVVFDAAELKLPELGYMVE 110

Query: 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL 229
           N+VL  +L   ++         P+ L ++                           +L L
Sbjct: 111 NRVLQLALWQALEAHPNVTLRCPASLQALQ-------------------RDDDGW-ELTL 150

Query: 230 SDGTSLYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPA 287
           +DG  + AKLV GADG  S+VR++AG    GW Y Q+ ++ +V+  N      WQ+F P+
Sbjct: 151 ADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPS 210

Query: 288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 347
           GP A LP+ DN++++VW  +P      ++M+     + +        G     +++G+  
Sbjct: 211 GPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFPARLGA-VTPVAAGA-- 267

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
                                           FPL+ +HA  YV   + L+GDAAHT++P
Sbjct: 268 --------------------------------FPLTRRHALQYVQPGLALVGDAAHTINP 295

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           LAGQGVNLG+ D   L  ++    + G      ++LK+Y+  R   N++M + +D F   
Sbjct: 296 LAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAG 355

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           +S +  PL   R      AQ    LKR  + YA G
Sbjct: 356 FSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALG 390

Length = 391

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score =  239 bits (612), Expect = 2e-74
 Identities = 128/449 (28%), Positives = 198/449 (44%), Gaps = 70/449 (15%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           DV +VGGG+VG++LA +L+   L K + +A+I++N     +         D R   ++  
Sbjct: 1   DVIIVGGGLVGLSLALALSR--LGK-IKIALIEANSP-SAAQPGF-----DARSLALSYG 51

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +    +++G W  +          + V D    G T   A +     LG VVE   L  +
Sbjct: 52  SKQILEKLGLWPKLA-PFATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQA 110

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LLS +             LT++ L   +    +                 LD  +G  L 
Sbjct: 111 LLSRLAL-----------LTNIQLYCPARYKEIIRNQD-------YVRVTLD--NGQQLR 150

Query: 237 AKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRFLPAGPIALLP 294
           AKL + ADG  S+VREL    T    Y+Q A+I  + H +    CA++RF P GP+ALLP
Sbjct: 151 AKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLP 210

Query: 295 IGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
           + DN+ S++VW +  K A    ++ + +F+  L  A                   F W  
Sbjct: 211 LKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQA-------------------FGWRL 251

Query: 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 413
           G                +    ER  +PL L+ A  +V  RVVLIG+AA T+HP+AGQG 
Sbjct: 252 GK---------------ITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGF 296

Query: 414 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473
           NLG  D  TL+ ++   I    D+G  +LL++Y   R+    + + + DG  + +S    
Sbjct: 297 NLGLRDVETLAEVL---IDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIP 353

Query: 474 PLNILRAAAFHGAQYISPLKRNIISYASG 502
            L  LR       +   PLK+ +   A G
Sbjct: 354 LLRALRNLGLLALENFPPLKKRLARQAMG 382

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

 Score =  239 bits (611), Expect = 6e-74
 Identities = 140/455 (30%), Positives = 216/455 (47%), Gaps = 78/455 (17%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS---NPALGKSNFIKKEDPPDPRVSTV 113
           DVA++GGGMVG+ALA +L        L +A+I+      AL +         PD RVS +
Sbjct: 6   DVAIIGGGMVGLALAAALKE----SDLRIAVIEGQLPEEALNEL--------PDVRVSAL 53

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           + ++    + +GAWQ ++  R A +  M+VW+       +++A  + +  LG +VEN+V+
Sbjct: 54  SRSSEHILRNLGAWQGIEARRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVI 113

Query: 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT 233
             +LL  +Q  +    + P+R  S+A+  S + ++                    L +G 
Sbjct: 114 QLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLT--------------------LDNGQ 153

Query: 234 SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----HNKENYCAWQRFLPAG 288
           +L AKL VGADG  S +R       T W Y  +A++  V     HN     A Q F P G
Sbjct: 154 ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNS---VARQIFTPQG 210

Query: 289 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 347
           P+A LP+ + N S+IVW+  P  A    +M+++ F K L    D   G            
Sbjct: 211 PLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLG------------ 258

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
                                 + ++  ER  FPL +++A ++V +RV L+GDAAHT+HP
Sbjct: 259 ----------------------LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHP 296

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           LAGQGVNLG  DA++L++ I      G DIG    L+ YE  RK     M+A + GF+  
Sbjct: 297 LAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDL 356

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           +S       ++R      A  +   K  I+  A G
Sbjct: 357 FSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALG 391

Length = 405

>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score =  237 bits (606), Expect = 3e-73
 Identities = 139/429 (32%), Positives = 210/429 (48%), Gaps = 67/429 (15%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ +VG GMVG ALA +L        L V ++D  P L    F   + P +PRVS ++ A
Sbjct: 4   DLLIVGAGMVGSALALALQG----SGLEVLLLDGGP-LSVKPF-DPQAPFEPRVSALSAA 57

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +    + +GAW  +   R + + +MQVWD +G G   ++A  V+ E+LG +VEN+V+  +
Sbjct: 58  SQRILERLGAWDGIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDA 117

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LL  + +++            + LL ++             +   G    L L+DG  L 
Sbjct: 118 LLERLHDSD------------IGLLANAR---------LEQMRRSGDDWLLTLADGRQLR 156

Query: 237 AKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPAGPIALLP 294
           A L V ADG  S VR LAG  T  W Y  +AI+ +V         AWQRF   GP+A LP
Sbjct: 157 APLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLP 216

Query: 295 I----GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
           +     +++ +IVW+  P++A    ++++D F   L  A                   F 
Sbjct: 217 LERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERA-------------------FE 257

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
              G+               V  A  R+  PL  +HA  YV   + LIGDAAHT+HPLAG
Sbjct: 258 GRLGE---------------VLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAG 302

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470
           QGVNLGF DA+ L+ ++      G  + +  +L ++E  R P N+ +MA ++GF++ +  
Sbjct: 303 QGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQA 362

Query: 471 DFGPLNILR 479
           D  PL  LR
Sbjct: 363 DPLPLRWLR 371

Length = 405

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  235 bits (601), Expect = 3e-72
 Identities = 127/466 (27%), Positives = 216/466 (46%), Gaps = 66/466 (14%)

Query: 38  QPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
             ++ S    S  +    YDVA+VGGG+VG+ LA +L        L +A+I++ PA    
Sbjct: 3   LTAATSPTLPSTRSLT--YDVAIVGGGIVGLTLAAALKD----SGLRIALIEAQPA---E 53

Query: 98  NFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR 157
               K      +   ++  +   F+ IG W+ +       F ++++ D    G  K+   
Sbjct: 54  AAAAK-----GQAYALSLLSARIFEGIGVWEKILPQI-GKFRQIRLSDADYPGVVKFQPT 107

Query: 158 DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATT 217
           D+  E LG V E++VL  +L   +Q+      + P+ + S+     +++++++      T
Sbjct: 108 DLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQT 167

Query: 218 LFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E 276
           L +K                 +V ADG +S +R+ AG KT GW Y Q+ +  TV+H    
Sbjct: 168 LQSK----------------LVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPH 211

Query: 277 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGP 336
           N  A++RF P+GP A+LP+  N   IVWT     A    ++ E +F+  L        G 
Sbjct: 212 NDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGK 271

Query: 337 HPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 396
                                             ++L  +R +FP+ L  ++ YV  R+ 
Sbjct: 272 ----------------------------------LELLGDRFLFPVQLMQSDRYVQHRLA 297

Query: 397 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV 456
           L+GDAAH  HP+ GQG+NLG  DA+ L++++      G DIG  ++LK+YE  RK  N +
Sbjct: 298 LVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWL 357

Query: 457 MMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           ++   D   + +S  + PL ++R       +++ PLKR  +   +G
Sbjct: 358 ILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTG 403

Length = 415

>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score =  223 bits (571), Expect = 3e-68
 Identities = 132/455 (29%), Positives = 207/455 (45%), Gaps = 79/455 (17%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
           ++YD+AVVGGGMVG A A   A     +  SVA+I+     G+    +   P D RVS +
Sbjct: 2   NKYDIAVVGGGMVGAATALGFAK----QGRSVAVIEG----GEPKAFEPSQPMDIRVSAI 53

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           +  ++   + +GAW  +   R   + +++ W++     T++++ ++N + LG +VEN+++
Sbjct: 54  SQTSVDLLESLGAWSSIVAMRVCPYKRLETWEHPEC-RTRFHSDELNLDQLGYIVENRLI 112

Query: 174 HSSL---LSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
              L    +   N      + P +L  +                      +G+   + L 
Sbjct: 113 QLGLWQQFAQYPNLTL---MCPEKLADL------------------EFSAEGNR--VTLE 149

Query: 231 DGTSLYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY-CAWQRFLPAG 288
            G  + AK V GADG  S+VR+LAG   T W Y Q+ ++  VE  +      WQ+F P+G
Sbjct: 150 SGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSG 209

Query: 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDF-VKILNHALDYGYGPHPKSISSGSVD 347
           P + LP+  N  ++VW  +PK      +MN +    +IL H         P  +    V 
Sbjct: 210 PRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--------FPAELGEIKVL 261

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
                                           FPL+ +HA  YV    VL+GDAAHT++P
Sbjct: 262 QHG----------------------------SFPLTRRHAQQYVKNNCVLLGDAAHTINP 293

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           LAGQGVNLGF D   L     +       +   +   +YE  R+P N++M   +D F K 
Sbjct: 294 LAGQGVNLGFKDVDVLLAETEK-----QGVLNDASFARYERRRRPDNLLMQTGMDLFYKT 348

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           +S    PL  +R AA   A+   PLK  ++ YA G
Sbjct: 349 FSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALG 383

Length = 384

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score =  224 bits (572), Expect = 5e-68
 Identities = 140/460 (30%), Positives = 207/460 (45%), Gaps = 83/460 (18%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           Q DV + GGG VG+ALA +L       HL V ++D+ PA   S         DPR S + 
Sbjct: 1   QCDVVIAGGGYVGLALAVALKQA--APHLPVTVVDAAPAGAWSR--------DPRASAIA 50

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR--------DVNK-EILG 165
            A     + +G W  +        D M + D      T    R        +V   E   
Sbjct: 51  AAARRMLEALGVWDEIAPEAQPITD-MVITD----SRTSDPVRPVFLTFEGEVEPGEPFA 105

Query: 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA 225
            +VEN+VL ++L               +    + L  ++S    ++     T+       
Sbjct: 106 HMVENRVLINALRK------------RAEALGIDLREATSVTDFETRDEGVTV------- 146

Query: 226 KLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-NYCAWQR 283
              LSDG+ L A+L V ADG +S++RELAG KT GW Y Q+ I+CTVEH +     A + 
Sbjct: 147 --TLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEH 204

Query: 284 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 343
           FLPAGP A+LP+  N S++VWT    DA   + +  DD   +    L+  +G        
Sbjct: 205 FLPAGPFAILPLKGNRSSLVWTERTADAE--RLVALDDL--VFEAELEQRFGHR------ 254

Query: 344 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 403
                         L            +K+  +R  FPL L  A ++V+ R  L+GDAAH
Sbjct: 255 --------------LGE----------LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAH 290

Query: 404 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL-D 462
            +HP+AGQG+NLG  D + L+ ++ E   +G DIG   +L++Y+  R+  + V M V  D
Sbjct: 291 GIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRF-DTVRMGVTTD 349

Query: 463 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
              + +S D   L  +R         +  LK   I  A+G
Sbjct: 350 VLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAG 389

Length = 403

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score =  215 bits (549), Expect = 6e-65
 Identities = 125/459 (27%), Positives = 195/459 (42%), Gaps = 86/459 (18%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP--DPRVST 112
           ++DV VVGGG+VG +LA +LA       L VA++             +      D RV  
Sbjct: 5   KFDVVVVGGGLVGASLALALAQ----SGLRVALLAPRAP-------PRPADDAWDSRVYA 53

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           ++P++ +F + +G WQ +   R A    M+V+         ++A       L  +VE+ +
Sbjct: 54  ISPSSQAFLERLGVWQALDAARLAPVYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSL 112

Query: 173 LHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
           +  +L        FQ   T +P+R   + + P +                    A L L+
Sbjct: 113 IERAL---WAALRFQPNLTWFPARAQGLEVDPDA--------------------ATLTLA 149

Query: 231 DGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAII----CTVEHNKENYCAWQRFL 285
           DG  L A L VGADG  S VR  AG K     Y Q  ++        H      A+Q F 
Sbjct: 150 DGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGT---AYQWFR 206

Query: 286 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 345
             G +ALLP+ D   ++VW+     A +  +++ +     +  A                
Sbjct: 207 DDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA---------------- 250

Query: 346 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 405
                       L   EC   P            FPL L+  +  V+ RV L+GDAAH +
Sbjct: 251 --------SGGRLGRLEC-VTPAA---------GFPLRLQRVDRLVAPRVALVGDAAHLI 292

Query: 406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 465
           HPLAGQG+NLG  D + L+ ++A G     D+G+  LL++YE  R+   + +    DG Q
Sbjct: 293 HPLAGQGMNLGLRDVAALADVLA-GREPFRDLGDLRLLRRYERARREDILALQVATDGLQ 351

Query: 466 KAYSVDFGPLNILRAA--AFHGAQYISPLKRNIISYASG 502
           + +++       LR A  A  GA     +KR ++ +A G
Sbjct: 352 RLFALPGPLARWLRNAGMALVGAL--PLVKRWLVRHALG 388

Length = 388

>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional

 Score =  214 bits (548), Expect = 1e-64
 Identities = 132/430 (30%), Positives = 200/430 (46%), Gaps = 91/430 (21%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
            DV + GGGMVG+A+AC L        L VA+++       +     + PP  RVS +  
Sbjct: 4   VDVVIAGGGMVGLAVACGLQG----SGLRVAVLEQRVPEPLAA----DAPPALRVSAINA 55

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           A+      +G WQ +   R + +  M+VWD    G   ++ + +    LG ++EN V+H 
Sbjct: 56  ASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHY 115

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL---------AK 226
           +L        +QK               SS I         TL     L         A 
Sbjct: 116 AL--------WQKA------------QQSSDI---------TLLAPAELQQVAWGENEAF 146

Query: 227 LDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRF 284
           L L DG+ L A+L VGADG  S +R  A    T W Y  +A++ T+   +  +  A Q F
Sbjct: 147 LTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVF 206

Query: 285 LPAGPIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 343
              G +A LP+ D +  +IVW+++P++A   +   E++F + L  A D   G        
Sbjct: 207 HGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLG-------- 258

Query: 344 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 403
                              C        +L SER VFPL+ ++A  + + R+ L+GDAAH
Sbjct: 259 ------------------LC--------ELESERQVFPLTGRYARQFAAHRLALVGDAAH 292

Query: 404 TVHPLAGQGVNLGFGDA----STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 459
           T+HPLAGQGVNLGF DA    + L R+  +    G DIG+   L++YE  RK +  +M+A
Sbjct: 293 TIHPLAGQGVNLGFMDAAELIAELRRLHRQ----GKDIGQHLYLRRYERSRKHSAALMLA 348

Query: 460 VLDGFQKAYS 469
            + GF+  ++
Sbjct: 349 GMQGFRDLFA 358

Length = 400

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score =  210 bits (537), Expect = 3e-63
 Identities = 139/448 (31%), Positives = 202/448 (45%), Gaps = 66/448 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D  +VGGG+VG A A +LA       LSVA+++     G+     + D PD RV      
Sbjct: 8   DAVIVGGGVVGAACALALAD----AGLSVALVE-----GREPPRWQADQPDLRVYAFAAD 58

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
             +    +G W  V+  R   + +M+VWD  G G   ++A  + +E LG +VEN +L   
Sbjct: 59  NAALLDRLGVWPAVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDR 118

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           L + +     Q    P+R+   AL   +  +                  +L L DG  L 
Sbjct: 119 LWAALHAAGVQLHC-PARVV--ALEQDADRV------------------RLRLDDGRRLE 157

Query: 237 AKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYC-AWQRFLPAGPIALLP 294
           A L + ADG  S +RELAG   +   Y+Q  ++  V+    +   AWQRFLP GP+ALLP
Sbjct: 158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLP 217

Query: 295 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG 354
             D  S+IVWT+   +A    +++E  F + L  A     G                   
Sbjct: 218 FADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGE------------------ 259

Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVN 414
                           V++AS R  FPL  +    YVS RV+ +GDAAH VHPLAGQGVN
Sbjct: 260 ----------------VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVN 303

Query: 415 LGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 474
           LG  D + L +++ +  A  AD      L+++   R+  N V     D   + +S D   
Sbjct: 304 LGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMH 363

Query: 475 LNILRAAAFHGAQYISPLKRNIISYASG 502
           L +LR +    A  + PL   +   ASG
Sbjct: 364 LTLLRGSVLGLAGKLPPLVDALWKRASG 391

Length = 392

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  196 bits (502), Expect = 7e-58
 Identities = 119/458 (25%), Positives = 188/458 (41%), Gaps = 95/458 (20%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPP--DPRVS 111
           + DV +VGGGM G  LA +L+   L+   L VA+I++            +  P  D R  
Sbjct: 3   RMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAFAPES-------DAHPGFDARAI 53

Query: 112 TVTPATISFFKEIGAWQYVQQH----RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV 167
            +   T      +G WQ +        H     + V D    G+ + +A D     LG V
Sbjct: 54  ALAAGTCQQLARLGVWQALADCATPITH-----IHVSDRGHAGFVRLDAEDYGVPALGYV 108

Query: 168 VEN----KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 223
           VE     + L + L      T       P+R+ ++     S  ++               
Sbjct: 109 VELHDVGQRLFALLDKAPGVTLHC----PARVANVERTQGSVRVT--------------- 149

Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----HNKENY 278
                L DG +L  +L V ADG  S +RE  G       Y Q A+I  V     H     
Sbjct: 150 -----LDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQG--- 201

Query: 279 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP 338
            A++RF   GP+ALLP+ D   ++VW    +DA +  S ++  F+  L  A         
Sbjct: 202 RAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA--------- 252

Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
                     F W  G              R+   A +R  +PL+L  A   +S R+ L+
Sbjct: 253 ----------FGWRLG--------------RITH-AGKRSAYPLALVTAAQQISHRLALV 287

Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIV 456
           G+AA T+HP+AGQG NLG  D  +L+  + + +A G DIG+ ++L++Y+  R+      +
Sbjct: 288 GNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATI 347

Query: 457 MMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
                DG  + ++  + PL + R         + P + 
Sbjct: 348 GFT--DGLVRLFANRWAPLVVGRNLGLMAMDLLPPARD 383

Length = 395

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score =  156 bits (396), Expect = 9e-43
 Identities = 109/452 (24%), Positives = 181/452 (40%), Gaps = 71/452 (15%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP--ALGKSNFIKKEDPP-DPRVST 112
            D+ VVG G  G++ A SLA       L V +I+  P  AL         DP  D R   
Sbjct: 4   SDIVVVGAGPAGLSFARSLAG----SGLKVTLIERQPLAAL--------ADPAFDGREIA 51

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           +T A+    + +GAW  + +   +     +V +        ++AR    + LG +V N +
Sbjct: 52  LTHASREILQRLGAWDRIPEDEISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHL 111

Query: 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG 232
           +  +    +   +            + LL  +   +V +             A++ L++G
Sbjct: 112 IRRAAYEAVSQQD-----------GIELLTGTRVTAVRTDDDG---------AQVTLANG 151

Query: 233 TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY-CAWQRFLPAGPI 290
             L A+L V AD   S  R   G       + +  ++C + H   ++  AW+ F     +
Sbjct: 152 RRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTL 211

Query: 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
           ALLP+  + S++V T+ P       +++ + F                            
Sbjct: 212 ALLPLNGHLSSLVLTLPPDQIEALLALDPEAF----AAE--------------------- 246

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
                        F+     ++L S R  +PL   +A+ +V+KR  LIGDAA  +HP+  
Sbjct: 247 ---------VTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTA 297

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470
            G NLG      L+R+I      G DIG ASLL++YE + + A   +    +     Y+ 
Sbjct: 298 HGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTD 357

Query: 471 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
           D  P  +LR A    A    PLK+ I    +G
Sbjct: 358 DRPPARLLRRAVLRAANRFPPLKQAIAKQLTG 389

Length = 392

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score =  153 bits (388), Expect = 1e-41
 Identities = 111/451 (24%), Positives = 184/451 (40%), Gaps = 84/451 (18%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
             +  D+AV+GGG  G+A A +LA        SVA++   P              D R +
Sbjct: 4   EKEHTDIAVIGGGPAGLAAAIALAR----AGASVALVAPEPP-----------YADLRTT 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTG----LGYTKYNARDVNKEILGCV 167
            +   +I F + +G W  +  H  A    M++ D TG        ++ A ++ ++  G  
Sbjct: 49  ALLGPSIRFLERLGLWARLAPHA-APLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYN 107

Query: 168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALL--PSSSSISVDSTPSATTLFTKGHLA 225
           + N +L+ +L +              R+  +  +      + SV                
Sbjct: 108 IPNWLLNRALEA--------------RVAELPNITRFGDEAESVRPREDE---------V 144

Query: 226 KLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRF 284
            + L+DGT+L A+L VGADG  S VRE AG     WSY Q A++    H++ +      F
Sbjct: 145 TVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEF 204

Query: 285 -LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 343
               GP   +P+    S++VW + P +A    ++++      +   +    G        
Sbjct: 205 HTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGK------- 257

Query: 344 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 403
                                      + L   R  +PLS + A+ + + R  L+G+AAH
Sbjct: 258 ---------------------------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAH 290

Query: 404 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDG 463
              P+  QG+NLG  D +TL  I+        D G A++L  Y+  R+P  +   A +D 
Sbjct: 291 VFPPIGAQGLNLGLRDVATLVEIVE---DRPEDPGSAAVLAAYDRARRPDILSRTASVDL 347

Query: 464 FQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
             ++   DF P+  LRAA  H      PL+R
Sbjct: 348 LNRSLLSDFLPVQDLRAAGLHLLYSFGPLRR 378

Length = 388

>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional

 Score =  136 bits (345), Expect = 1e-35
 Identities = 118/446 (26%), Positives = 184/446 (41%), Gaps = 80/446 (17%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
           +D+A+VG G VG+ALA  LA    T+ LS+A+ID+      +N        DPR   ++ 
Sbjct: 12  FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASAN--------DPRAIALSH 63

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
            +    + +GAW           + + V      G T  +  D +   LG VV    L +
Sbjct: 64  GSRVLLETLGAWP----ADATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVA 119

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV-DSTPSATTLFTKGHLAKLDLSDGTS 234
           +L   ++ T  +   + +  T+ A    +  +++   TP          L          
Sbjct: 120 ALARAVRGTPVR---WLTSTTAHAPAQDADGVTLALGTPQGA-----RTLR--------- 162

Query: 235 LYAKLVGADGGK-SRVRELAGFKTTGWSYSQNAIICTVEHN--KENYCAWQRFLPAGPIA 291
                V A+GG     +  AG       Y Q AI+ TV  +  +  + AW+RF   GP+A
Sbjct: 163 -ARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGW-AWERFTHEGPLA 220

Query: 292 LLPIGD----NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 347
           LLP+G     +++ +VW   P +A+   ++ +D F+  L  A                  
Sbjct: 221 LLPLGGPRQADYA-LVWCCAPDEAARRAALPDDAFLAELGAA------------------ 261

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
            F    G  T  A                R  FPL L  A   V+ R+  +G+AA T+HP
Sbjct: 262 -FGTRMGRFTRIAG---------------RHAFPLGLNAARTLVNGRIAAVGNAAQTLHP 305

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           +AGQG+NLG  DA TL+       A+         L  + A R     V +   D   + 
Sbjct: 306 VAGQGLNLGLRDAHTLAD------ALSDHGATPLALATFAARRALDRRVTIGATDLLPRL 359

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLK 493
           ++VD  PL  LR AA    +++ PLK
Sbjct: 360 FTVDSRPLAHLRGAALTALEFVPPLK 385

Length = 398

>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  118 bits (298), Expect = 2e-29
 Identities = 117/452 (25%), Positives = 179/452 (39%), Gaps = 84/452 (18%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           +  ++G G+ GM  A S A     K +   I +S  ++    F K     D R + +TP 
Sbjct: 3   NTVILGCGLSGMLTALSFAQ----KGIKTTIFESK-SVKSPEFFK-----DIRTTALTPH 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQ-VWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           + +F   I  W+ +++    +  +MQ ++          + R+    +LG VV+N     
Sbjct: 53  SKNFLFSIDIWEELEK----FVAEMQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKK 108

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
            LLS + N      I  ++   +      S I  D       L                 
Sbjct: 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNL----------------- 151

Query: 236 YAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIALL 293
              L+  DG  S+VR           Y Q A+   ++H K  EN CA + FLP GP ALL
Sbjct: 152 ---LIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHEN-CAMEHFLPLGPFALL 206

Query: 294 PIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWF 352
           P+ D + S+++W           S + D    I+N  ++              V   +  
Sbjct: 207 PLKDQYASSVIW-----------STSSDQAALIVNLPVE-------------EVRFLTQR 242

Query: 353 RGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQG 412
               +L            + + SE   FPL  + AN Y   R+VLI D AHTVHPLAGQG
Sbjct: 243 NAGNSLGK----------ITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQG 292

Query: 413 VNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 472
           +N G  D   LS I++              L++Y+  R+  N +M  + D     +S   
Sbjct: 293 LNQGIKDIEILSMIVSNN----------GTLQEYQKLRQEDNFIMYKLTDELNNIFSNYS 342

Query: 473 GPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504
             L  LR   F       P+K  I SYA G++
Sbjct: 343 KNLRCLRQIGFKVINNFKPIKNLITSYAMGKR 374

Length = 374

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 70/242 (28%), Positives = 97/242 (40%), Gaps = 71/242 (29%)

Query: 227 LDLSDGTSLYAK-LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----------HNK 275
           ++LSDG +L A+ LVG DGG+S VR+ AG    GW  + + +I  VE           + 
Sbjct: 135 VELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPEWGVHRDA 194

Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHAL--DYG 333
               A+ R    GP+           ++ T     A+   ++++      L  AL   YG
Sbjct: 195 LGIHAFGRLEDEGPV----------RVMVTEKQVGATGEPTLDD------LREALIAVYG 238

Query: 334 --YGPH-PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY 390
             YG H P  IS      F+    D                             + A +Y
Sbjct: 239 TDYGIHSPTWISR-----FT----DMA---------------------------RQAASY 262

Query: 391 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450
              RV+L GDAAH   P+ GQG+N G  DA  L   +A+   V       SLL  Y AER
Sbjct: 263 RDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQ---VVKGTSPESLLDTYHAER 319

Query: 451 KP 452
            P
Sbjct: 320 HP 321

Length = 488

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 86/437 (19%), Positives = 132/437 (30%), Gaps = 121/437 (27%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            DV +VGGG  G+ LA     + L +  + V +++ +                PR   + 
Sbjct: 2   TDVLIVGGGPAGLMLA-----LLLARAGVRVVLVERHA----------TTSVLPRAGGLN 46

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
             T+   ++ G    +                           +            +   
Sbjct: 47  QRTMELLRQAGLEDRI--LAEGA------------------PHEGMGLAFYNTSRRRADL 86

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD---STPSATTLFTKGHLAK--LDL 229
             L S       + T+YP       L   + +        T   +       +     D 
Sbjct: 87  DFLTSPP-----RVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDR 141

Query: 230 SDGT--SLYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP 286
            DG   ++ AK + G DGG+S VR+  G +  G+                         P
Sbjct: 142 RDGEEYTVRAKYLVGCDGGRSPVRKQLGIEFEGFEGV----------------------P 179

Query: 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 346
            G + +L                DA D     E  FV  L  A      PH +    G  
Sbjct: 180 FGSLDVLF---------------DAPDLSDPVERAFVHYLIGA------PHSRGFMVGPW 218

Query: 347 D---------MFSWFRGDATLSAK----ECFE------VPPRVVKLASERMVFPLSLKHA 387
                        W         +    E  +                 + ++ +  + A
Sbjct: 219 RSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSIWGVRSRVA 278

Query: 388 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA--SLLKK 445
             Y   RV L GDAAH   P  GQG+N G  DA  L+  +A  +      G A  +LL  
Sbjct: 279 TRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLR-----GTAGEALLDT 333

Query: 446 YEAERKPANIVMMAVLD 462
           YEAER+P   V  AV+D
Sbjct: 334 YEAERRP---VAWAVVD 347

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 96/427 (22%), Positives = 141/427 (33%), Gaps = 107/427 (25%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            V +VGGG VG+ALA  L      + +   +++                 +P+ +T +  
Sbjct: 9   PVLIVGGGPVGLALALDLGR----RGVDSILVERKD----------GTAFNPKANTTSAR 54

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDY-TGLGY-TKYNARDVNKEILGCVVE----- 169
           ++  F+         + R A        DY T + Y T+    ++ +  L    E     
Sbjct: 55  SMEHFRR---LGIADEVRSAGLPV----DYPTDIAYFTRLTGYELARFRLPSAREAITPV 107

Query: 170 -----------------NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212
                             K L   LL            Y  RLT                
Sbjct: 108 GGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDF----------EQDA 157

Query: 213 PSATTLFTKGHLAKLDLSDGTSL--YAK-LVGADGGKSRVRELAGFK---TTGWSYSQNA 266
              T           DL  G SL   A  LVG DG +S VR   G     T+G     + 
Sbjct: 158 DGVTATVE-------DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSI 210

Query: 267 IICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMN-EDDFVKI 325
            I                    P     +G + + + W  NP       +++  D++   
Sbjct: 211 YIRA------------------PGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDEW--- 249

Query: 326 LNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK 385
           L H L  G        +   VD  ++ R    +     +EV   V       +       
Sbjct: 250 LFHQL-RGGEDEF---TIDDVDARAFVR--RGVGEDIDYEVLSVVPWTGRRLV------- 296

Query: 386 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 445
            A++Y   RV L GDAAH   P  G G+N G GDA  L+  +A   AV       +LL  
Sbjct: 297 -ADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLA---AVLNGWAGPALLDS 352

Query: 446 YEAERKP 452
           YEAER+P
Sbjct: 353 YEAERRP 359

Length = 545

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 66/228 (28%), Positives = 89/228 (39%), Gaps = 48/228 (21%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICT-VEHNKENYCAWQRFLP--AGPIALLPI 295
           LVGADGG+S VR+  G    G +   + ++   V     +  AW ++     G IAL P+
Sbjct: 160 LVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIALCPL 219

Query: 296 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 355
               +++     P        ++ D    +L              I   SV   S FR  
Sbjct: 220 PG--TDLFQIQAPLPPGGEPDLSADGLTALLAER------TGRTDIRLHSVTWASAFR-- 269

Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG-QGVN 414
                                R+        A+ Y   RV L GDAAH VHP AG QG+N
Sbjct: 270 ------------MNA------RL--------ADRYRVGRVFLAGDAAH-VHPPAGGQGLN 302

Query: 415 LGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 462
               DA  L   +A  +A GA     +LL  YE ER+P   V  AVL 
Sbjct: 303 TSVQDAYNLGWKLAAVLA-GAP---EALLDTYEEERRP---VAAAVLG 343

Length = 502

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 60.7 bits (147), Expect = 6e-10
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 381 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 440
           PL   + + Y  + VVL+GDAAH++HP+ GQG+NL   DA  L   +   + +   I  A
Sbjct: 273 PLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL--DLHLSGQIALA 330

Query: 441 SLLKKYEAERKPAN 454
             L+++E  R+P N
Sbjct: 331 DALERFERIRRPVN 344

Length = 388

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 387 ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 446
           A+ + S RV+L GDAAH + P AGQG+N G  DA+ L+  +A  +   A     +LL  Y
Sbjct: 280 ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAG---DALLDTY 336

Query: 447 EAERKP 452
           E ER+P
Sbjct: 337 EQERRP 342

Length = 500

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 395 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
           ++ IGDAAH + P+ G G+NL   DA   + I+AE +  G        L   +  R+  
Sbjct: 286 LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGR--VSDRDLAAVQRRREFP 342

Length = 407

>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 35/85 (41%), Positives = 40/85 (47%), Gaps = 16/85 (18%)

Query: 368 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 427
           PRVV    ER V      H N  V   VVL+GDAAHT H   G G  L   DA  L+R +
Sbjct: 255 PRVV---CERWV------HWNRRVP--VVLMGDAAHTAHFSIGSGTKLALEDAIELARCL 303

Query: 428 AEGIAVGADIGEASLLKKYEAERKP 452
            E      D+  A  L  YE ER+ 
Sbjct: 304 HE---HPGDLPAA--LAAYEEERRV 323

Length = 765

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 390 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 449
           YV  RV LIGDAAH + P  G G   G  DA  L+R++ +      D+    LL+ Y+  
Sbjct: 297 YVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPA--LLEAYDDV 354

Query: 450 RKP 452
           R+P
Sbjct: 355 RRP 357

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 385 KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS--L 442
           + A  Y S R+ L GDAAH   P  GQG+N+G  DA  L   +A  I      G A   L
Sbjct: 264 RQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-----GWAPDWL 318

Query: 443 LKKYEAERKPAN 454
           L  Y AER P  
Sbjct: 319 LDSYHAERHPVG 330

Length = 493

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429
           +  L   RM F             RV L+GDAA    P    GV     DA  L+  +A 
Sbjct: 294 IFDLEVPRMAF------------GRVALLGDAAFVARPHTAAGVAKAAADAVALAEALA- 340

Query: 430 GIAVGADIGEASLLKKYEAERKPANIVMMA 459
             A   DI  A  L  +EAER      ++A
Sbjct: 341 --AAAGDIDAA--LAAWEAERLAVGAAIVA 366

Length = 386

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 16/70 (22%)

Query: 394 RVVLIGDAAHTVHPL----AGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 449
           RV L+GDAAH ++P+    A Q +     DA    R +A+ +A   D   A  L  YEAE
Sbjct: 298 RVTLLGDAAHPMYPVGSNGASQAIL----DA----RALADALAAHGDPEAA--LAAYEAE 347

Query: 450 RKP--ANIVM 457
           R+P  A IV+
Sbjct: 348 RRPATAQIVL 357

Length = 413

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 49/282 (17%), Positives = 80/282 (28%), Gaps = 60/282 (21%)

Query: 235 LYAKLV-GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR---FLPAGPI 290
           + AK+V  ADG  S +    G K                   E+Y    +    +P    
Sbjct: 139 VRAKVVIDADGVNSALARKLGLKD---------------RKPEDYAIGVKEVIEVPDDGD 183

Query: 291 ALLPIGDNFSNIV---WTMNPKDASD----CKSMNEDDFVKILNHALDYGYGPHPKSISS 343
               +             + P            + +D  +      L+  +  HP     
Sbjct: 184 VEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLER-FKEHP----- 237

Query: 344 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 403
                         L   +  E     +         P     +   V   V+L+GDAA 
Sbjct: 238 ---------AIRKLLLGGKILEYAAGGI---------PEGGPASRPLVGDGVLLVGDAAG 279

Query: 404 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV--MMAVL 461
            V+PL G+G+      A    ++ AE IA  A  G    L +YE   +  ++    +  L
Sbjct: 280 FVNPLTGEGIRY----AIKSGKLAAEAIA-EALEGGEEALAEYERLLR-KSLAREDLKSL 333

Query: 462 DGFQKAYSVDFGPLNILRAAAFHGA--QYISPLKRNIISYAS 501
              +    +    L  L            I    R +I Y  
Sbjct: 334 RLLKLLLRLLDRTLPALIKLLADKDLLGLIKKYLRKLILYPL 375

Length = 396

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 391 VSKRVVLIGDAAHTVHPL-AGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 449
           +  R+ L GDA H +H +  GQG+N G  DA  L   +   I  GA      LL+ YEAE
Sbjct: 273 IQDRIFLAGDACH-IHSVNGGQGLNTGLADAFNLIWKLNMVIHHGA---SPELLQSYEAE 328

Query: 450 RKP 452
           RKP
Sbjct: 329 RKP 331

Length = 487

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 51/235 (21%), Positives = 82/235 (34%), Gaps = 50/235 (21%)

Query: 230 SDGTSLY--AKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPA 287
           ++       A L+  DG  S +R  AGF    +S                + AW+  L A
Sbjct: 148 TNSVETVSAAYLIACDGVWSMLRAKAGFSKARFS---------------GHIAWRTTLAA 192

Query: 288 G--PIALLPIGDNFSNIVWTMNPKD---ASDCKSMNEDDFVKILNHALDYGYGPHPKSIS 342
              P + L        +   +  K    A   K     +FV I         G +P  + 
Sbjct: 193 DALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAIT-------GGENPGEV- 244

Query: 343 SGSVDMFSWFRGDATLSAKECF-EVPPRVVKL---ASERMVFPL-SLKHANNYVSKRVVL 397
                   W +       K  + +    V+++     E   +PL  +  A      R + 
Sbjct: 245 --------WSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIF 296

Query: 398 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
           +GDA+H V P A QG  +   DA+ L    AE +    D      LK++++ RK 
Sbjct: 297 LGDASHAVTPFAAQGAAMAIEDAAAL----AEALDSD-DQSAG--LKRFDSVRKE 344

Length = 400

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 381 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 440
           P+ +K    +   R +L+GDAA  V P +G+G+      A    ++ A+ IA     G+A
Sbjct: 252 PIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYF----AMKSGQMAAQAIAEYLQNGDA 307

Query: 441 SLLKKYEAERKPANIVMMAVLDGFQKAY 468
           + L+ YE +          VL   Q  Y
Sbjct: 308 TDLRHYERKFMKLYGTTFRVLRVLQMVY 335

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 368 PRVVKLASERMVFP---LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLS 424
             ++   SE  +       LK   ++V  R+VL+GDAAH   P  GQG      DA  L+
Sbjct: 242 REILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLA 301

Query: 425 RIIAEGIAVGADIGEASLLKKYEAERKP 452
             +        D  +A  L++Y+  R  
Sbjct: 302 NCLNA-----YDFEKA--LQRYDKIRVK 322

Length = 373

>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 30/78 (38%)

Query: 391 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450
           V  RV L+GDAA  V   +G+G+          +  I E   +G  + E   L  Y    
Sbjct: 268 VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRW 327

Query: 451 KPANIVMMAVLDGFQKAY 468
                    VLD  Q+ +
Sbjct: 328 DKEYRPTYRVLDLLQRVF 345

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 398

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450
           RVVLIGDAAH   P   QG  +   DA  L    AE +A    +  A  L+ Y A R
Sbjct: 283 RVVLIGDAAHATTPHLAQGAGMAIEDAIVL----AEELARHDSLEAA--LQAYYARR 333

Length = 375

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
            + DV ++GGG+VG++ A  LA     +   V ++++  A G
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAE----RGADVTVLEAGEAGG 40

Length = 387

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
           RV + GDA HT    AGQG+N+   D   L   +A   AV +      LL  Y AER+  
Sbjct: 341 RVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA---AVLSGRSPPELLHTYSAERQAI 397

Length = 634

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429
           R+ L GDAAH V P   +G+NL   D   L+R + E
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVE 315

Length = 392

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKS 97
          DV V+GGG+VG++ A  LA     + LSV +++    A G S
Sbjct: 1  DVVVIGGGIVGLSTAYELA----RRGLSVTLLERGDLASGAS 38

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|219864 pfam08491, SE, Squalene epoxidase

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 23/92 (25%), Positives = 41/92 (44%)

Query: 392 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 451
            K ++L+GDA +  HPL G G+ +   D   L +++     +      + +LK +   RK
Sbjct: 129 KKGLILLGDALNMRHPLTGGGMTVALNDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRK 188

Query: 452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 483
           P + V+  +       ++ D   L  LR   F
Sbjct: 189 PYDAVINTLSIALYSLFAADSDELKALRKGCF 220

This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus. Length = 276

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKS--NF 99
          YD+ +VG G++G+A A + A     + LSV +I+ +  A G S  NF
Sbjct: 1  YDLIIVGAGILGLAHAYAAAR----RGLSVTVIERSSRAQGASVRNF 43

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 24 CSSVAEKASSSNSGQPSSESEV-----KQSFTNND---DQYDVAVVGGGMVGMALACSLA 75
          C S     S S+S + S ++EV     K S+T+     D+YD+ +VG G  GM+ A    
Sbjct: 22 CGSNTTSKSDSSSSKESEKTEVTSGASKTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAK 81

Query: 76 SMPLTKHLSVAIIDSNPALG 95
                 ++  I++  P  G
Sbjct: 82 D----AGMNPVILEKMPVAG 97

Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PLN02985	514	squalene monooxygenase	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
PRK11445	351	putative oxidoreductase; Provisional	99.98
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.97
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.97
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.97
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.97
PRK10015	429	oxidoreductase; Provisional	99.97
PRK10157	428	putative oxidoreductase FixC; Provisional	99.96
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.95
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.94
PLN02697	529	lycopene epsilon cyclase	99.92
PLN02463	447	lycopene beta cyclase	99.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.87
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.86
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.81
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.72
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.5
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.49
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.49
COG2081	408	Predicted flavoproteins [General function predicti	99.47
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.42
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.4
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.38
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.36
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.36
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.34
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.34
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.32
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.31
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.29
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.28
COG0579	429	Predicted dehydrogenase [General function predicti	99.28
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.25
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.16
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.14
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.12
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.12
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.09
PRK05257	494	malate:quinone oxidoreductase; Validated	99.08
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.07
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.07
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.06
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.05
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.05
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.05
PLN02661	357	Putative thiazole synthesis	99.05
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.04
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.04
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.03
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.02
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.02
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.01
KOG2853	509	consensus Possible oxidoreductase [General functio	99.0
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.99
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.98
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.98
PRK07233	434	hypothetical protein; Provisional	98.97
PLN02612	567	phytoene desaturase	98.94
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.94
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.94
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.93
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.9
PRK08274	466	tricarballylate dehydrogenase; Validated	98.88
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.87
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.85
PRK07804	541	L-aspartate oxidase; Provisional	98.84
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.84
PLN02576	496	protoporphyrinogen oxidase	98.83
PLN02568	539	polyamine oxidase	98.81
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.8
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.8
PLN02268	435	probable polyamine oxidase	98.78
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.75
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.75
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.74
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.74
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.74
PRK07121	492	hypothetical protein; Validated	98.72
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.71
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.71
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.71
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.7
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.7
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.7
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.68
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.68
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.67
PRK06175	433	L-aspartate oxidase; Provisional	98.67
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.65
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.63
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.63
PLN02676	487	polyamine oxidase	98.63
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.63
PRK08401	466	L-aspartate oxidase; Provisional	98.63
KOG2852	380	consensus Possible oxidoreductase [General functio	98.63
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.62
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.62
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PLN02487	569	zeta-carotene desaturase	98.6
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.6
PRK14694	468	putative mercuric reductase; Provisional	98.59
PLN02976	1713	amine oxidase	98.59
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.56
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.56
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.56
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.55
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.55
PRK08275	554	putative oxidoreductase; Provisional	98.54
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.54
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.53
PRK12839	572	hypothetical protein; Provisional	98.53
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.52
PRK09897	534	hypothetical protein; Provisional	98.51
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.51
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.51
PRK07395	553	L-aspartate oxidase; Provisional	98.51
PLN02815	594	L-aspartate oxidase	98.51
PRK06116	450	glutathione reductase; Validated	98.5
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.5
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.5
PRK09077	536	L-aspartate oxidase; Provisional	98.5
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.49
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.48
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK06370	463	mercuric reductase; Validated	98.47
PRK08071	510	L-aspartate oxidase; Provisional	98.47
PRK10262	321	thioredoxin reductase; Provisional	98.46
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.45
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.45
PLN02507	499	glutathione reductase	98.45
PTZ00058	561	glutathione reductase; Provisional	98.44
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.44
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.43
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.42
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.42
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.4
PRK13748	561	putative mercuric reductase; Provisional	98.4
PRK07512	513	L-aspartate oxidase; Provisional	98.39
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.39
PLN02529	738	lysine-specific histone demethylase 1	98.38
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.37
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.37
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.36
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.36
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.36
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.35
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.34
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.33
PLN03000	881	amine oxidase	98.31
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.31
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.31
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.29
PLN02546	558	glutathione reductase	98.28
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.28
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.27
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.26
PRK14727	479	putative mercuric reductase; Provisional	98.25
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.23
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.21
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.21
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.19
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.19
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.19
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.18
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.18
PRK12831	464	putative oxidoreductase; Provisional	98.17
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.13
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.13
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.12
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.11
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.1
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.09
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.07
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.06
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.06
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.05
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.05
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.04
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.03
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.03
COG3349	485	Uncharacterized conserved protein [Function unknow	98.01
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.01
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.01
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.99
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.98
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.98
PRK07208	479	hypothetical protein; Provisional	97.95
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.95
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.95
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.94
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.93
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.92
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.92
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.91
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.9
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.89
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.88
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.88
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.88
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.86
PRK06116	450	glutathione reductase; Validated	97.85
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.82
PRK07846	451	mycothione reductase; Reviewed	97.82
PLN02852	491	ferredoxin-NADP+ reductase	97.78
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.78
PLN02507	499	glutathione reductase	97.78
COG3573	552	Predicted oxidoreductase [General function predict	97.76
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.76
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.75
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.74
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.74
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.74
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.74
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.73
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.73
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.73
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.72
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.71
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.71
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.7
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.68
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.66
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.66
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.66
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.66
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.66
PRK07846	451	mycothione reductase; Reviewed	97.65
TIGR02053	463	MerA mercuric reductase. This model represents the	97.64
TIGR02053	463	MerA mercuric reductase. This model represents the	97.64
PRK06370	463	mercuric reductase; Validated	97.63
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.62
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.62
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.59
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.58
PRK02106	560	choline dehydrogenase; Validated	97.58
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.57
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.54
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.54
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.53
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.52
PTZ00052	499	thioredoxin reductase; Provisional	97.51
PTZ00188	506	adrenodoxin reductase; Provisional	97.5
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.49
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.49
PTZ00052	499	thioredoxin reductase; Provisional	97.48
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.48
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.47
PRK14694	468	putative mercuric reductase; Provisional	97.47
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.46
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.45
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.45
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.43
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.43
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.42
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.4
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.4
PRK14727	479	putative mercuric reductase; Provisional	97.4
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.39
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.36
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.35
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.34
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.33
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.32
PRK13748	561	putative mercuric reductase; Provisional	97.31
PTZ00058	561	glutathione reductase; Provisional	97.31
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.28
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.27
PLN02546	558	glutathione reductase	97.24
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.24
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.22
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.2
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.2
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.14
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.13
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.13
PLN02785	587	Protein HOTHEAD	97.1
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.08
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.07
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.03
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.96
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.91
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.84
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.83
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.79
PRK10262	321	thioredoxin reductase; Provisional	96.78
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.75
PRK13984	604	putative oxidoreductase; Provisional	96.72
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.71
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.64
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.62
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.6
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.56
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	96.55
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.35
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.09
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.96
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.93
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.78
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	95.73
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	95.67
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	95.63
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	95.62
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.57
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.56
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.46
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.25
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	95.12
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	94.94
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	94.8
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	94.78
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	94.43
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.16
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.15
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.97
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.93
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.88
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.85
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.82
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.63
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.57
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.49
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.34
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.31
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.13
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.96
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.8
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	92.78
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.68
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.66
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	92.64
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.61
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	92.49
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.42
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	92.3
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.29
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	92.19
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.11
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.98
COG4716	587	Myosin-crossreactive antigen [Function unknown]	91.97
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.87
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.83
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.8
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.54
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.52
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	91.49
PTZ00082	321	L-lactate dehydrogenase; Provisional	91.48
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	91.48
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.35
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.34
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	91.34
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.34
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	91.33
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.31
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.29
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.26
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.16
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.09
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	90.88
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	90.82
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	90.79
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.67
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	90.49
KOG2755	334	consensus Oxidoreductase [General function predict	90.45
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.34
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.24
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	90.23
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	90.13
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	90.07
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.92
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	89.82
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	89.7
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.41
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.41
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	89.32
PRK07417	279	arogenate dehydrogenase; Reviewed	89.25
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.24
PRK04148	134	hypothetical protein; Provisional	89.16
PRK12831	464	putative oxidoreductase; Provisional	89.14
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	89.08
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	88.98
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.96
PRK06223	307	malate dehydrogenase; Reviewed	88.94
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	88.92
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	88.79
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	88.76
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	88.69
PLN02353	473	probable UDP-glucose 6-dehydrogenase	88.6
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	88.25
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.07
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	88.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	87.95
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	87.93
PRK11730	715	fadB multifunctional fatty acid oxidation complex	87.92
PRK15116	268	sulfur acceptor protein CsdL; Provisional	87.89
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.57
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	87.4
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	87.16
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	87.14
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.12
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.05
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	87.01
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	86.98
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	86.79
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.75
PTZ00117	319	malate dehydrogenase; Provisional	86.74
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.74
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	86.63
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.61
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.1
PLN02256	304	arogenate dehydrogenase	86.1
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	86.07
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.03
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	85.74
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	85.48
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	85.44
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	85.39
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	85.36
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	85.35
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	85.26
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	85.23
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	85.23
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	85.19
PLN02494	477	adenosylhomocysteinase	85.05
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	84.99
PRK09496	453	trkA potassium transporter peripheral membrane com	84.86
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	84.73
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.59
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.46
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	84.35
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.27
PRK10669	558	putative cation:proton antiport protein; Provision	84.26
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	84.19
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	84.11
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.98
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	83.98
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	83.77
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	83.63
PRK08328	231	hypothetical protein; Provisional	83.56
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	83.56
PRK05562	223	precorrin-2 dehydrogenase; Provisional	83.45
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	83.41
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	83.29
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	83.19

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=5.1e-52  Score=425.41  Aligned_cols=394  Identities=35%  Similarity=0.582  Sum_probs=320.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+||||||+|+++|+.|++.    |++|+|||+.+.+....    ......++..++++++++|+++|+++.+....
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~----G~~v~viE~~~~~~~~~----g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~   74 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPLAA----DAPPALRVSAINAASEKLLTRLGVWQDILARR   74 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC----CCEEEEEeCCCCccccc----CCCCCceeeecchhHHHHHHHcCCchhhhhhc
Confidence            58999999999999999999996    99999999998653110    11223577889999999999999999988765


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      ..++..+.+|+......+.+..........++.++|..|.+.|.+.+.+.++++++++++|++++.              
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--------------  140 (400)
T PRK08013         75 ASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--------------  140 (400)
T ss_pred             CccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------
Confidence            557888888876544445554433334445789999999999999999876699999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL  292 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  292 (514)
                            .++.+.+++.+|++++||+ |+|||.+|.||+.+++......|...++.+.++.+.++ ...++.|.+++++++
T Consensus       141 ------~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~  214 (400)
T PRK08013        141 ------GENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAF  214 (400)
T ss_pred             ------cCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEE
Confidence                  3456888888999999999 99999999999999998888888888888888766554 345667888899999


Q ss_pred             eecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225          293 LPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  371 (514)
Q Consensus       293 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (514)
                      +|..++. .+++|..+.+........+.+.|.+.+...+.    +.               ++.               .
T Consensus       215 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------l~~---------------~  260 (400)
T PRK08013        215 LPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFD----NR---------------LGL---------------C  260 (400)
T ss_pred             EECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHh----Hh---------------hCc---------------e
Confidence            9998754 67888887665544445667777777765332    00               000               1


Q ss_pred             eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225          372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  451 (514)
Q Consensus       372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~  451 (514)
                      +.......||+..+.+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+.....+|+.|+++|+
T Consensus       261 ~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~  340 (400)
T PRK08013        261 ELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRK  340 (400)
T ss_pred             EecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            22233346888888899999999999999999999999999999999999999999987765555544568999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225          452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  510 (514)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  510 (514)
                      +++..++..++.+.++|+..+++...+|+.++.++..+|++++.+++.++|...+|..+
T Consensus       341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  399 (400)
T PRK08013        341 HSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWL  399 (400)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccCcCCcccc
Confidence            99999999999999999999999999999999999999999999999999976566543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=9.5e-52  Score=424.50  Aligned_cols=393  Identities=35%  Similarity=0.589  Sum_probs=325.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..+||+||||||+|+++|+.|++.    |++|+|+|+.. ... .     ......++..++++++++|+++|+++.+.+
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~----G~~v~viE~~~~~~~-~-----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~   72 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEA-L-----NELPDVRVSALSRSSEHILRNLGAWQGIEA   72 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhC----CCEEEEEcCCCCccc-c-----cCCCCcceecccHHHHHHHHhCCchhhhhh
Confidence            368999999999999999999996    99999999973 221 0     112346788999999999999999999987


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ....++..+.+|+........+..........++.+++..+.+.|.+.+.+.++++++++++|++++.            
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~------------  140 (405)
T PRK08850         73 RRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV------------  140 (405)
T ss_pred             hhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe------------
Confidence            65557888999987655556665544444456889999999999999998876699999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  290 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  290 (514)
                              +++.+.|.+++|++++||+ |+|||.+|.+|+.++.......|+..++.+.++.+.++ ...+++|.+++++
T Consensus       141 --------~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~  212 (405)
T PRK08850        141 --------GESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPL  212 (405)
T ss_pred             --------eCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCce
Confidence                    3456788889999999999 99999999999999988888888888999988765544 4567788899999


Q ss_pred             EEeecCC-CceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225          291 ALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  369 (514)
Q Consensus       291 ~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (514)
                      +++|+.+ +..+++|..+..........+.+++.+.+.+.+...+                   +               
T Consensus       213 ~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~---------------  258 (405)
T PRK08850        213 AFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRL-------------------G---------------  258 (405)
T ss_pred             EEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhh-------------------C---------------
Confidence            9999986 5678899988766555566677788888877543100                   0               


Q ss_pred             eeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 010225          370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE  449 (514)
Q Consensus       370 ~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~  449 (514)
                      ..+.......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|....+.+.+.+...+|+.|+++
T Consensus       259 ~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~  338 (405)
T PRK08850        259 LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERW  338 (405)
T ss_pred             cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            01223344468888888899999999999999999999999999999999999999999887655555557899999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC-CCCCCC
Q 010225          450 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPL  510 (514)
Q Consensus       450 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~  510 (514)
                      |++++..++..++.+.++|+.++++...+|+.++..+..+|++++.+++..+|+. .+|.++
T Consensus       339 R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~~  400 (405)
T PRK08850        339 RKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLKGELPELA  400 (405)
T ss_pred             HhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCCchhh
Confidence            9999999999999999999999999999999999999999999999999999964 466554

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=2e-51  Score=422.52  Aligned_cols=396  Identities=36%  Similarity=0.637  Sum_probs=318.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+||||||+|+++|+.|++.    |++|+|||+.+....  ..........++..+++++.++|+++|+++.+.+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~--~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~   75 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVK--PFDPQAPFEPRVSALSAASQRILERLGAWDGIAARR   75 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC----CCEEEEEcCCCcccc--ccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence            57999999999999999999996    999999999873210  000011224466789999999999999999988755


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      ..++..+.+++..+.....+..........++.+++..+.+.|.+.+++.+ ++++++++|++++.              
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------  140 (405)
T PRK05714         76 ASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR--------------  140 (405)
T ss_pred             CccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------
Confidence            557788888887765556665433334456789999999999999998876 99999999999986              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL  292 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  292 (514)
                            .++.+.|++.+|.+++||+ |+|||.+|.||+.++.+...+.|...++...+....++ ...|+.+.+.+++++
T Consensus       141 ------~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  214 (405)
T PRK05714        141 ------SGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAF  214 (405)
T ss_pred             ------cCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEE
Confidence                  4456888888998899999 99999999999999887777777777777666544433 456777889999999


Q ss_pred             eecCCC----ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225          293 LPIGDN----FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  368 (514)
Q Consensus       293 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      +|++++    ...++|..++.........+.+.|.+.+.+.|.. +                  ++.             
T Consensus       215 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~------------------~~~-------------  262 (405)
T PRK05714        215 LPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEG-R------------------LGE-------------  262 (405)
T ss_pred             eeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-H------------------hCC-------------
Confidence            999642    2456787776555455556778888888775541 0                  000             


Q ss_pred             ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                       +.. ......||+....+++|..+||+|+|||||+++|+.|||+|+||+||..|+++|..+...+.+++...+|+.|++
T Consensus       263 -~~~-~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~  340 (405)
T PRK05714        263 -VLS-ADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFER  340 (405)
T ss_pred             -cee-cCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence             111 122345888888889999999999999999999999999999999999999999887655545555789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC-CCCCCCCC
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLPLP  511 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~-~~~~~~~~  511 (514)
                      .|++++..++..++.+.++|+..+++...+|+..|+.++..|++|+.++++.+|. +.+|.++.
T Consensus       341 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~~~  404 (405)
T PRK05714        341 RRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPELAR  404 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchhhc
Confidence            9999999999999999999999999999999999999999999999999999995 55777654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=5.4e-51  Score=417.43  Aligned_cols=389  Identities=34%  Similarity=0.567  Sum_probs=320.9

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ++...+||+||||||+|+++|+.|++.    |++|+|||+.+.+.....     ....+...++++++++|+++|+++.+
T Consensus         2 ~~~~~~dV~IvGaG~aGl~~A~~La~~----G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~   72 (392)
T PRK08773          2 SRRSRRDAVIVGGGVVGAACALALADA----GLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAV   72 (392)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcC----CCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhh
Confidence            345678999999999999999999996    999999999876532111     22346788999999999999999999


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .+....++..+.+|+..+.....++.........++.++|..|.+.|.+.+++.+ ++++++++|++++.          
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~----------  141 (392)
T PRK08773         73 RAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ----------  141 (392)
T ss_pred             hHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe----------
Confidence            8755556778888876544445555444444556789999999999999999876 99999999999986          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG  288 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  288 (514)
                                .++.+.|++.+|.++.||+ |+|||.+|.+|+.++.......|...++.+.++.+.++ ...|+.|.+++
T Consensus       142 ----------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g  211 (392)
T PRK08773        142 ----------DADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTG  211 (392)
T ss_pred             ----------cCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCC
Confidence                      3456778888888999999 99999999999999887766667777777776665444 56677888999


Q ss_pred             ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225          289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  368 (514)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      +++++|.+++...++|..+..........+.+.+.+.+.+.|. .+.+.                               
T Consensus       212 ~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------------------------------  259 (392)
T PRK08773        212 PLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFA-ARLGE-------------------------------  259 (392)
T ss_pred             cEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC-------------------------------
Confidence            9999999999888999987665555556677888888877654 11111                               


Q ss_pred             ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                        .........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.++++.+.+++...+|+.|++
T Consensus       260 --~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~  337 (392)
T PRK08773        260 --VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWAR  337 (392)
T ss_pred             --eEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence              011233346888887889999999999999999999999999999999999999999998876667777889999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      +|+++...++...+.+.++|+.++++...+|+.+|..++++|++|+.++++.+|.
T Consensus       338 ~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g~  392 (392)
T PRK08773        338 TRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV  392 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999984

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.4e-50  Score=411.19  Aligned_cols=369  Identities=28%  Similarity=0.456  Sum_probs=302.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+||||||+|+++|+.|++.    |++|+|+|+.+....      .....++++.++++++++|+++|+|+.+.....
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~----G~~v~l~E~~~~~~~------~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~   71 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK----GIKTTIFESKSVKSP------EFFKDIRTTALTPHSKNFLFSIDIWEELEKFVA   71 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC----CCeEEEecCCCCCCC------ccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC
Confidence            6899999999999999999996    999999999864310      112347899999999999999999999876544


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       ++..+.+++..+.....+...  .....++.++|..|.+.|.+.+.+.++++++++++++++..               
T Consensus        72 -~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~---------------  133 (374)
T PRK06617         72 -EMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS---------------  133 (374)
T ss_pred             -CCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---------------
Confidence             788888888766555555432  23446899999999999999999987799999999999976               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEe
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL  293 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~  293 (514)
                           .++.+.|.+.++ +++||+ |+|||.+|.+|+.++.+.....| +.++.+.++.+.++ ...+++|.+.|+++++
T Consensus       134 -----~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~l  206 (374)
T PRK06617        134 -----HNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALL  206 (374)
T ss_pred             -----cCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEe
Confidence                 345678888776 899999 99999999999999877666666 67788887766555 3467888899999999


Q ss_pred             ecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225          294 PIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  372 (514)
Q Consensus       294 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (514)
                      |++++. ..++|..+.+........+.+.+...+...+.                   +.++.               ..
T Consensus       207 Pl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~---------------i~  252 (374)
T PRK06617        207 PLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNAG-------------------NSLGK---------------IT  252 (374)
T ss_pred             ECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhhc-------------------hhcCc---------------ee
Confidence            999875 67889887554444445566666655544221                   11110               12


Q ss_pred             eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225          373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  452 (514)
Q Consensus       373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~  452 (514)
                      .......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..          ..+|++|++.|++
T Consensus       253 ~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~  322 (374)
T PRK06617        253 IDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQE  322 (374)
T ss_pred             eccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhH
Confidence            233455799998889999999999999999999999999999999999999998831          2489999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      ++..++..++.+.++|+..+++...+|+..|..++++|++|+.++++.+|.
T Consensus       323 ~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  373 (374)
T PRK06617        323 DNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK  373 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999984

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=1.9e-50  Score=417.88  Aligned_cols=426  Identities=45%  Similarity=0.775  Sum_probs=327.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      |||+||||||+|+++|+.|++.+...|++|+|||+.+.+...+.  .........++..|+++++++|+++|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            69999999999999999999821112999999999664422110  0000113468999999999999999999999876


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC--CceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ...++..+.+++........++... .....++.+++..+.+.|.+.+.+.+  +++++++++|++++....      ++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~------~~  153 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK------YP  153 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc------cc
Confidence            6557788888877665556665433 23455789999999999999998876  699999999999975100      00


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-CC-cceEEEecCCC
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-EN-YCAWQRFLPAG  288 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~g  288 (514)
                      ++       ++..++|++.+|++++||+ |+|||.+|.||+.+++...++.|.+.++++.+..+. ++ ...++.|.++|
T Consensus       154 ~~-------~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g  226 (437)
T TIGR01989       154 ND-------NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG  226 (437)
T ss_pred             cC-------CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCC
Confidence            11       2366888999999999999 999999999999999999999999999998887753 23 57788899999


Q ss_pred             ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccc---cccccc
Q 010225          289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS---AKECFE  365 (514)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  365 (514)
                      +++++|++++..+++|..+..........+.++|...+...+..++.+.|....  .+..+..+.......   ....+.
T Consensus       227 ~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~~~~~~~  304 (437)
T TIGR01989       227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYL--LDYAMEKLNEDIGFRTEGSKSCFQ  304 (437)
T ss_pred             CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccc--cccccccccccccccccccccccc
Confidence            999999999999999999877666666788899999888877333322221000  000011111000000   001111


Q ss_pred             CCCceeeecc-ceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225          366 VPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  444 (514)
Q Consensus       366 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~  444 (514)
                      .|+.+..+.. ....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+++...+|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~  384 (437)
T TIGR01989       305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK  384 (437)
T ss_pred             cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence            3333333222 235699988889999999999999999999999999999999999999999999887766665578999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHH
Q 010225          445 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII  497 (514)
Q Consensus       445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~  497 (514)
                      .|+++|++++..++..++.+.++|+..+++...+|+.+|.+++.+|++|+.++
T Consensus       385 ~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~  437 (437)
T TIGR01989       385 PYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM  437 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence            99999999999999999999999999999999999999999999999999874

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.8e-49  Score=409.69  Aligned_cols=393  Identities=32%  Similarity=0.562  Sum_probs=311.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      +..++||+||||||+|+++|+.|++.    |++|+||||++.+..        ...++++.++++++++|+++|+++++.
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~   82 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDS----GLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKIL   82 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcC----CCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhH
Confidence            34578999999999999999999996    999999999986521        124678899999999999999999987


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .... ++..+.+++..+.....+..........++.+.+..|.+.|++.+.+.++++++++++|++++.           
T Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~-----------  150 (415)
T PRK07364         83 PQIG-KFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY-----------  150 (415)
T ss_pred             hhcC-CccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-----------
Confidence            7554 5667777766554444454333333445666666789999999998876799999999999976           


Q ss_pred             CCccccccccCCeeEEEeCC-C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecC
Q 010225          212 TPSATTLFTKGHLAKLDLSD-G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP  286 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  286 (514)
                               +++.+.|++.+ +  .+++||+ |+|||.+|.+|+.++....++.+...++.+.+..+.++ ...+..|.+
T Consensus       151 ---------~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (415)
T PRK07364        151 ---------QQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWP  221 (415)
T ss_pred             ---------cCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecC
Confidence                     33556677753 2  3699999 99999999999999888777777666777777655433 334455678


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      .++++++|++++..+++|..+.+........+.+++.+.+.+.+. +|.+.                             
T Consensus       222 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----------------------------  271 (415)
T PRK07364        222 SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG-DQLGK-----------------------------  271 (415)
T ss_pred             CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhhcC-----------------------------
Confidence            899999999998888888876544444445677788888777554 11111                             


Q ss_pred             CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  446 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y  446 (514)
                         + ........||+....+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|...++.+.++....+|+.|
T Consensus       272 ---~-~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y  347 (415)
T PRK07364        272 ---L-ELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRY  347 (415)
T ss_pred             ---c-eecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence               0 111233457877777888999999999999999999999999999999999999999887655455556899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCC-CCCCCC
Q 010225          447 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR-LPLPLP  511 (514)
Q Consensus       447 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~-~~~~~~  511 (514)
                      ++.|+++...++..++.+.++|+..+++..++|+.++.+++.+|++++.+++.++|+.. .|.+++
T Consensus       348 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  413 (415)
T PRK07364        348 ERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLKGRTPQLAK  413 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCCccCchhcc
Confidence            99999999999999999999999999999999999999999999999999999999654 666554

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=2.4e-49  Score=403.48  Aligned_cols=380  Identities=34%  Similarity=0.512  Sum_probs=327.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC-CCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .+||+||||||+||++|+.|++.    |++|+|||+. ...          ...++++.|+++++++|+++|+.+.+...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~----G~~V~l~E~~~~~~----------~~~~r~~~l~~~~~~~L~~lG~~~~i~~~   67 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA----GLDVTLLERAPREL----------LERGRGIALSPNALRALERLGLWDRLEAL   67 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEccCcccc----------ccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence            57999999999999999999997    9999999998 232          34558999999999999999998888887


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      ...+...+.+++... ....++........+++.+++..|.+.|.+.+.+.++++++++++|+.++.             
T Consensus        68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~-------------  133 (387)
T COG0654          68 GVPPLHVMVVDDGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ-------------  133 (387)
T ss_pred             cCCceeeEEEecCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE-------------
Confidence            776666666665544 455555555555777899999999999999999998899999999999987             


Q ss_pred             ccccccccCCeeEEEeC-CCcEEEeeE-EEecCCCchhhhhhC-CCccCCCCCceEEEEEEEecCCC-cceEEEecCCCc
Q 010225          214 SATTLFTKGHLAKLDLS-DGTSLYAKL-VGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP  289 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~-~g~~~~ad~-V~AdG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~  289 (514)
                             +++.+.+++. ||++++||+ |+|||.+|.||+.++ .......|...++...+..+.++ ...+++|.+.++
T Consensus       134 -------~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (387)
T COG0654         134 -------DGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGP  206 (387)
T ss_pred             -------cCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCc
Confidence                   4456667777 999999999 999999999999999 45555588999999998887444 788889999999


Q ss_pred             eEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225          290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  369 (514)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (514)
                      +.++|++++...++|..+..........+.+.+...+.+.++..  ..               ++               
T Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~---------------~~---------------  254 (387)
T COG0654         207 FALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGER--DP---------------LG---------------  254 (387)
T ss_pred             eEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcc--cc---------------cc---------------
Confidence            99999999999999999999888888999999988888865400  00               11               


Q ss_pred             eeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 010225          370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE  449 (514)
Q Consensus       370 ~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~  449 (514)
                      ..........||+....+.+|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+...+.+   ..+|+.|++.
T Consensus       255 ~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~  331 (387)
T COG0654         255 RVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEAR  331 (387)
T ss_pred             eEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHh
Confidence            1344556667999999999999999999999999999999999999999999999999999874433   7899999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          450 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       450 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      |++++..++..++.+.+.|+...++...+|+..+..+...+++++.+.+...|..
T Consensus       332 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  386 (387)
T COG0654         332 RRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV  386 (387)
T ss_pred             hhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999999887753

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=5.1e-49  Score=401.23  Aligned_cols=380  Identities=33%  Similarity=0.602  Sum_probs=304.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+||||||+|+++|+.|++.    |++|+|||+.+.....    .......+...++++++++|+++|+++.+.+..
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~----G~~v~l~E~~~~~~~~----~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~   74 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ----GRSVAVIEGGEPKAFE----PSQPMDIRVSAISQTSVDLLESLGAWSSIVAMR   74 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC----CCcEEEEcCCCcccCC----CCCCCCccEEEecHHHHHHHHHCCCchhhhHhh
Confidence            48999999999999999999996    9999999987632100    000113466799999999999999999998754


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      ..++..+..|+... ....+..........++.+.+..|...|.+.+.+.++++++++++|++++.              
T Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--------------  139 (384)
T PRK08849         75 VCPYKRLETWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF--------------  139 (384)
T ss_pred             CCccceEEEEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------
Confidence            44677777776432 233444333333445788888899999999988877799999999999987              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL  292 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  292 (514)
                            +++.++|++++|.+++||+ |+|||.+|.+|+.++.....+.|...++.+.+..+.++ ...+++|.+.|+..+
T Consensus       140 ------~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~  213 (384)
T PRK08849        140 ------SAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSF  213 (384)
T ss_pred             ------cCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEE
Confidence                  4466889999999999999 99999999999999988877888777777776655444 567888888899999


Q ss_pred             eecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225          293 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  372 (514)
Q Consensus       293 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (514)
                      +|+.++...++|+..+.........+++.+.+.+.+.++ .+...                                + .
T Consensus       214 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~  259 (384)
T PRK08849        214 LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFP-AELGE--------------------------------I-K  259 (384)
T ss_pred             eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhh-hhhCc--------------------------------E-E
Confidence            999887777888876544334445677888888877554 11000                                0 1


Q ss_pred             eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225          373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  452 (514)
Q Consensus       373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~  452 (514)
                      . .....||+....+++|..+||+|+|||||.|+|+.|||+|+||+||..|+++|...   +.  ..+.+|+.|+++|++
T Consensus       260 ~-~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~  333 (384)
T PRK08849        260 V-LQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GV--LNDASFARYERRRRP  333 (384)
T ss_pred             e-ccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhH
Confidence            1 23346888888899999999999999999999999999999999999999998642   22  237899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      ++..++..++.+.++|+..+++...+|+.+|..++++|++|+.++++.+|+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  384 (384)
T PRK08849        334 DNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALGM  384 (384)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999999984

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.3e-48  Score=401.81  Aligned_cols=391  Identities=33%  Similarity=0.533  Sum_probs=312.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+||||||+|+++|+.|++++  .|++|+||||.+...        ....+++..+++++.++|+++|+++.+.....
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g--~g~~v~liE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~   71 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAA--PHLPVTVVDAAPAGA--------WSRDPRASAIAAAARRMLEALGVWDEIAPEAQ   71 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCC--CCCEEEEEeCCCccc--------CCCCcceEEecHHHHHHHHHCCChhhhhhhcC
Confidence            79999999999999999999961  149999999987541        12346899999999999999999999987654


Q ss_pred             cCcceEEEEeCCCcc-----eeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          136 AYFDKMQVWDYTGLG-----YTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                       ++..+.+++..+..     ...+........+.++.++|..|.+.|.+.+.+.+ ++++++++|++++.          
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------  139 (403)
T PRK07333         72 -PITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET----------  139 (403)
T ss_pred             -cccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence             67777777643321     12232222223445678999999999999998876 99999999999976          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG  288 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  288 (514)
                                +++.+.|.+.+|.++.||+ |+|||.+|.+|+.++.......+...++.+.++.+.++ ...++++.+.+
T Consensus       140 ----------~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  209 (403)
T PRK07333        140 ----------RDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAG  209 (403)
T ss_pred             ----------cCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCC
Confidence                      4466788888998999999 99999999999999887776777777777777655433 45667788999


Q ss_pred             ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225          289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  368 (514)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      +++++|++++..+++|..+..........+.+.+...+.+.+. .+.+.                               
T Consensus       210 ~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------------------------------  257 (403)
T PRK07333        210 PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFG-HRLGE-------------------------------  257 (403)
T ss_pred             ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhcCc-------------------------------
Confidence            9999999999888888766544333334455666677766543 11110                               


Q ss_pred             ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                        ....+....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+.....+|+.|++
T Consensus       258 --~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~  335 (403)
T PRK07333        258 --LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR  335 (403)
T ss_pred             --eEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence              011222335777777788999999999999999999999999999999999999999998764433445899999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC-CCCCCCCC
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPLPL  512 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~  512 (514)
                      +|+++...++..++.+.++|+.++++...+|+.++..+..+|++++.+++.++|+. .+|.++..
T Consensus       336 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  400 (403)
T PRK07333        336 WRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLLKG  400 (403)
T ss_pred             HHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhhcC
Confidence            99999999999999999999999999999999999999999999999999999976 58876654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=2.3e-48  Score=398.15  Aligned_cols=387  Identities=32%  Similarity=0.596  Sum_probs=311.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.+.....    .......+...+++++.++|+.+|+|+.+..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~----~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~   74 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAPFD----ADSQPDVRISAISAASVALLKGLGVWDAVQA   74 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC----CCEEEEEcCCCCCccc----ccCCCCceEEeccHHHHHHHHHcCChhhhhh
Confidence            3568999999999999999999996    9999999998643111    0112345678999999999999999999887


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ....++..+..++... ..+.++.........+|.++|..|.+.|.+.+.+.++++++++++|++++.            
T Consensus        75 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~------------  141 (391)
T PRK08020         75 MRSHPYRRLETWEWET-AHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR------------  141 (391)
T ss_pred             hhCcccceEEEEeCCC-CeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE------------
Confidence            5544566666554333 233343333333456789999999999999998875599999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  290 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  290 (514)
                              .++.+.|.+.+|.+++||+ |+|||.+|.+|+.++.....+.|...++.+.++.+.++ ...|+.|.+.++.
T Consensus       142 --------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (391)
T PRK08020        142 --------DDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPR  213 (391)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCE
Confidence                    3456788888888999999 99999999999999888777778778888887766543 5667888888999


Q ss_pred             EEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225          291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  370 (514)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (514)
                      .++|..++..+++|...+.........+.+.+.+.+.+.+.    +.               ++.              +
T Consensus       214 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~~--------------~  260 (391)
T PRK08020        214 AFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFP----AR---------------LGA--------------V  260 (391)
T ss_pred             EEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh----hh---------------ccc--------------e
Confidence            99999988888888876554444455667777777766432    10               000              1


Q ss_pred             eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225          371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  450 (514)
Q Consensus       371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r  450 (514)
                      ...  ....||+....+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|.+..+.+.++....+|+.|++.|
T Consensus       261 ~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R  338 (391)
T PRK08020        261 TPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR  338 (391)
T ss_pred             Eec--cccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            111  234588887788999999999999999999999999999999999999999998876665666689999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      +++...++..++.+.++|+.++++.+.+|+.+|..++..+++|+.++++.+|+
T Consensus       339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  391 (391)
T PRK08020        339 MADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL  391 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999984

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.1e-48  Score=400.20  Aligned_cols=380  Identities=28%  Similarity=0.499  Sum_probs=313.3

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      |+++.+||+||||||+|+++|+.|++.    |++|+|||+.+.+           ...++..+++++.++|+++|+|+.+
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~----G~~v~liE~~~~~-----------~~~r~~~l~~~s~~~l~~lgl~~~~   67 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARA----GASVALVAPEPPY-----------ADLRTTALLGPSIRFLERLGLWARL   67 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcC----CCeEEEEeCCCCC-----------CCcchhhCcHHHHHHHHHhCchhhh
Confidence            345678999999999999999999996    9999999998754           1245677889999999999999998


Q ss_pred             HhhhccCcceEEEEeCCCcce----eeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGY----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~  206 (514)
                      ..... ++..+.+++..+...    ..+...+......+|.+++..+.+.|.+.+.+.+++. +++++|++++.      
T Consensus        68 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~------  139 (388)
T PRK07494         68 APHAA-PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP------  139 (388)
T ss_pred             Hhhcc-eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE------
Confidence            77554 677888887654321    2333333334556889999999999999999887566 88999999976      


Q ss_pred             cccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225          207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF  284 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  284 (514)
                                    .++.+.|++++|++++||+ |+|||.+|.+|+.++.+.....|++.++.+.+..+.++ ...++.+
T Consensus       140 --------------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  205 (388)
T PRK07494        140 --------------REDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH  205 (388)
T ss_pred             --------------cCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe
Confidence                          4466788888898999999 99999999999999988888888888888888765544 3345677


Q ss_pred             cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccc
Q 010225          285 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  364 (514)
Q Consensus       285 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (514)
                      .+.|+++++|++++..+++|....+........+.+.+.+.+.+.+.                   ++++.         
T Consensus       206 ~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~~---------  257 (388)
T PRK07494        206 TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQ-------------------SMLGK---------  257 (388)
T ss_pred             CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-------------------hhcCC---------
Confidence            78899999999988889999987766555566777888888776443                   11111         


Q ss_pred             cCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225          365 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  444 (514)
Q Consensus       365 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~  444 (514)
                            .........||+......+|..+||+|+|||||.++|+.|||+|+||+||..|+++|....   .+.....+|+
T Consensus       258 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~  328 (388)
T PRK07494        258 ------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLA  328 (388)
T ss_pred             ------eEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHH
Confidence                  1122334569998888889999999999999999999999999999999999999998742   2334578999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          445 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      .|+++|+++...++..++.+.++|...+++...+|+.+|..++++|++++.++++.||.+
T Consensus       329 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~  388 (388)
T PRK07494        329 AYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLGPG  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999964

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-47  Score=391.05  Aligned_cols=378  Identities=30%  Similarity=0.466  Sum_probs=306.3

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      |.++.+||+||||||+|+++|+.|++.+..+|++|+|+|+.+...        .....++..+++.++++|+++|+|+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~   78 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD   78 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc
Confidence            456779999999999999999999997211246899999986441        123568999999999999999999862


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                          ..++..+.+++........+...+......++.++|..|.+.|.+.+.+.+ +++++++++++++.          
T Consensus        79 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~----------  143 (398)
T PRK06996         79 ----ATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ----------  143 (398)
T ss_pred             ----CCcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee----------
Confidence                225667777754433344454444444556899999999999999999987 89999999999976          


Q ss_pred             CCCccccccccCCeeEEEeCCC---cEEEeeE-EEecCC-CchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225          211 STPSATTLFTKGHLAKLDLSDG---TSLYAKL-VGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF  284 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  284 (514)
                                .++.+++++.++   ++++||+ |+|||. +|.+|+.++.......|+..++++.++.+.++ ...++.+
T Consensus       144 ----------~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (398)
T PRK06996        144 ----------DADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERF  213 (398)
T ss_pred             ----------cCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEe
Confidence                      456788888755   5799999 999996 68889999888888889999999988876544 4567778


Q ss_pred             cCCCceEEeecCCCc---eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225          285 LPAGPIALLPIGDNF---SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK  361 (514)
Q Consensus       285 ~~~g~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      .+.|++.++|.+++.   .+++|..+++........+.+.+.+.+.+.+. ++.+                         
T Consensus       214 ~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-------------------------  267 (398)
T PRK06996        214 THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFG-TRMG-------------------------  267 (398)
T ss_pred             cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhc-cccC-------------------------
Confidence            889999999998654   67888887665555566778888888888654 1100                         


Q ss_pred             ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225          362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  441 (514)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~  441 (514)
                            . + ........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...   + +  ...
T Consensus       268 ------~-~-~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~  333 (398)
T PRK06996        268 ------R-F-TRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPL  333 (398)
T ss_pred             ------c-e-EEecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHH
Confidence                  0 1 11222335888888889999999999999999999999999999999999999999752   2 2  267


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhh
Q 010225          442 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS  501 (514)
Q Consensus       442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~  501 (514)
                      +|+.|+++|++++..++..++.+.++|+..+++...+|+.++..++.+|++|+.+++++|
T Consensus       334 ~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~  393 (398)
T PRK06996        334 ALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM  393 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence            899999999999999999999999999999999999999999999999999999999998

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=7.8e-48  Score=394.44  Aligned_cols=388  Identities=27%  Similarity=0.452  Sum_probs=308.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +++||+||||||+|+++|+.|++.    |++|+|+||.+.++..     .....++++.++++++++|+++|+++.+...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~-----~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~   72 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAALA-----DPAFDGREIALTHASREILQRLGAWDRIPED   72 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCccccc-----CCCCchhHHHhhHHHHHHHHHCCChhhhccc
Confidence            368999999999999999999996    9999999999865211     0123355678899999999999999988776


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      ...+...+.+++........++.........++.++|..+.+.|.+.+.+..+++|+++++|++++.             
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~-------------  139 (392)
T PRK09126         73 EISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT-------------  139 (392)
T ss_pred             cCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE-------------
Confidence            5556677777765544444554333334456788999999999999987655599999999999976             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceE
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  291 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  291 (514)
                             .++.+.|.+++|+++.||+ |+|||.+|.+|+.+++......++...+...+....+. ...+.++.++++++
T Consensus       140 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (392)
T PRK09126        140 -------DDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLA  212 (392)
T ss_pred             -------cCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeE
Confidence                   3456778888999999999 99999999999999877666666666665555543332 34556677778899


Q ss_pred             EeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225          292 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  371 (514)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (514)
                      ++|.+++..++++..+.+........+.+.+...+.+.|...+..                                  .
T Consensus       213 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------------~  258 (392)
T PRK09126        213 LLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA----------------------------------M  258 (392)
T ss_pred             EeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC----------------------------------e
Confidence            999999988888877665443444566777877776654311100                                  0


Q ss_pred             eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225          372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  451 (514)
Q Consensus       372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~  451 (514)
                      ........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+++.+.+...+++|+.|+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~  338 (392)
T PRK09126        259 RLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHR  338 (392)
T ss_pred             EEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            11223345787777788899999999999999999999999999999999999999998765545555889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      +++..++..++.+.++++..+++...+|+.++..+.++|++++.+++.++|..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  391 (392)
T PRK09126        339 LATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQLTGRK  391 (392)
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=5.8e-47  Score=387.26  Aligned_cols=383  Identities=40%  Similarity=0.713  Sum_probs=308.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (514)
                      ||+||||||+|+++|+.|++.    |++|+||||.+.++..++     ...+++..+++++.++|+++|+++++.+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~   71 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS----GLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ   71 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC----CCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCC
Confidence            799999999999999999996    999999999998743221     22457889999999999999999998873444


Q ss_pred             CcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccc
Q 010225          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (514)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~  216 (514)
                      +...+.+++..+.....+..........++.++|..|.+.|.+.+.+.++++|+++++|++++.                
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~----------------  135 (385)
T TIGR01988        72 PIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR----------------  135 (385)
T ss_pred             CceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe----------------
Confidence            7778888876654444444333233445789999999999999999887799999999999976                


Q ss_pred             cccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEee
Q 010225          217 TLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLP  294 (514)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p  294 (514)
                          .++.+.+.+++|+++.+|+ |+|||.+|.+|+.++.+.....+...++...+..+.+. ...+..+.+.++++++|
T Consensus       136 ----~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  211 (385)
T TIGR01988       136 ----HSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLP  211 (385)
T ss_pred             ----cCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeE
Confidence                3456788888998999999 99999999999999877666566666666666554433 34455667889999999


Q ss_pred             cCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeec
Q 010225          295 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA  374 (514)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (514)
                      .+++..++.|..+..........+.+++...+.+.+. .+.+.                                + ...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------------~-~~~  257 (385)
T TIGR01988       212 LPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG-SRLGA--------------------------------I-TLV  257 (385)
T ss_pred             CCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhcCc--------------------------------e-Eec
Confidence            9999988999876554444445667788888777543 11000                                0 111


Q ss_pred             cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHH
Q 010225          375 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN  454 (514)
Q Consensus       375 ~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~  454 (514)
                      .....||+....+++|..++|+|+|||||.++|+.|||+|+||+||..|++.|...++.+.++....+|+.|+++|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~  337 (385)
T TIGR01988       258 GERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDN  337 (385)
T ss_pred             cCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            23345777777778899999999999999999999999999999999999999988765434445789999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225          455 IVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  502 (514)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g  502 (514)
                      ..++..++.+.+++...++....+|+.+++.+.++|.+++.+.+.++|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  385 (385)
T TIGR01988       338 AAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG  385 (385)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999998875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-47  Score=390.40  Aligned_cols=382  Identities=18%  Similarity=0.238  Sum_probs=300.9

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ++.+.+||+||||||+|+++|+.|++.    |++|+|||+++..          ....++..+++.+.++|+++|+|+.+
T Consensus         2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~----G~~v~liE~~~~~----------~~~~r~~~l~~~s~~~L~~lG~~~~~   67 (407)
T PRK06185          2 AEVETTDCCIVGGGPAGMMLGLLLARA----GVDVTVLEKHADF----------LRDFRGDTVHPSTLELMDELGLLERF   67 (407)
T ss_pred             CccccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcc----------CccccCceeChhHHHHHHHcCChhHH
Confidence            456779999999999999999999996    9999999998754          22346789999999999999999998


Q ss_pred             HhhhccCcceEEEEeCCC-cceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          131 QQHRHAYFDKMQVWDYTG-LGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      .+....++..+.+++... .....+..... ....++.+++..+.+.|.+.+.+.++++++++++|++++..        
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~--------  138 (407)
T PRK06185         68 LELPHQKVRTLRFEIGGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE--------  138 (407)
T ss_pred             hhcccceeeeEEEEECCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe--------
Confidence            775554667777775432 12223332222 23456789999999999999987756999999999999861        


Q ss_pred             CCCCccccccccCCe--eEEEeCCCc-EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225          210 DSTPSATTLFTKGHL--AKLDLSDGT-SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF  284 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~--~~v~~~~g~-~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  284 (514)
                                 ++..  +.+...+|+ +++||+ |+|||.+|.+|+.++++.....+....+...++..... ...++.|
T Consensus       139 -----------~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (407)
T PRK06185        139 -----------GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRF  207 (407)
T ss_pred             -----------CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEe
Confidence                       1122  344555674 799999 99999999999999988877777666555554443222 2466788


Q ss_pred             cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccc
Q 010225          285 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  364 (514)
Q Consensus       285 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (514)
                      .++++++++|.+ +.++++|..+..........+.+.|.+.+.+.++                .+...++.         
T Consensus       208 ~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------------~~~~~l~~---------  261 (407)
T PRK06185        208 GPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAP----------------ELADRVAE---------  261 (407)
T ss_pred             cCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCc----------------cHHHHHhh---------
Confidence            899999999997 7888999987766555555667777777776443                11111111         


Q ss_pred             cCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225          365 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  444 (514)
Q Consensus       365 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~  444 (514)
                            .........||+....+++|..+|++|+|||||.++|++|||+|+||+||..|++.|.++++.+ +. ....|+
T Consensus       262 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~  333 (407)
T PRK06185        262 ------LKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLA  333 (407)
T ss_pred             ------cCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHH
Confidence                  1123345568888888999999999999999999999999999999999999999999988765 43 358999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHhccChhHHHHHHHHh
Q 010225          445 KYEAERKPANIVMMAVLDGFQKAYSVDF--GPLNILRAAAFHGAQYISPLKRNIISYA  500 (514)
Q Consensus       445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~~~~~~~~~~  500 (514)
                      .|++.|+++...++..++.+.++|..+.  ++...+|+.+|..+++.|++|+.++++.
T Consensus       334 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~  391 (407)
T PRK06185        334 AVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV  391 (407)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence            9999999999999999999999999998  9999999999999999999999998874

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=6.8e-46  Score=380.61  Aligned_cols=389  Identities=28%  Similarity=0.494  Sum_probs=303.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +.+||+||||||+|+++|+.|++.. .+|++|+||||.......     .....+++..+++++.++|+++|+++.+...
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~~G~~v~v~E~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~   75 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLS-HGGLPVALIEAFAPESDA-----HPGFDARAIALAAGTCQQLARLGVWQALADC   75 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcc-cCCCEEEEEeCCCccccc-----CCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence            4689999999999999999999830 128999999996422110     1123467899999999999999999998875


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .. +...+.+.+........+...+......++.++|..|.+.|.+.+.+.++++++++++|++++.             
T Consensus        76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~-------------  141 (395)
T PRK05732         76 AT-PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER-------------  141 (395)
T ss_pred             cC-CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE-------------
Confidence            54 5556655543332223332222333345678999999999999998765699999999999976             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceE
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  291 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  291 (514)
                             .++.+.|++.+|.++.+|+ |+|||.+|.+|+.++.+.....++..++...++..... ...+..+.+.++++
T Consensus       142 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  214 (395)
T PRK05732        142 -------TQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLA  214 (395)
T ss_pred             -------cCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEE
Confidence                   4466788888888899999 99999999999999887776667777777766654332 34455667888999


Q ss_pred             EeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225          292 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  371 (514)
Q Consensus       292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (514)
                      ++|.+++...++|..+.+........+.+.+.+.+.+.+.  |.                 .+.              +.
T Consensus       215 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~--------------~~  261 (395)
T PRK05732        215 LLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG--WR-----------------LGR--------------IT  261 (395)
T ss_pred             EeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH--hh-----------------hcc--------------ee
Confidence            9999999988889887655444455667777777776442  10                 000              01


Q ss_pred             eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225          372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  451 (514)
Q Consensus       372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~  451 (514)
                       .......|++.....++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+++.+.+...+.+|+.|+++|+
T Consensus       262 -~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~  340 (395)
T PRK05732        262 -HAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQ  340 (395)
T ss_pred             -ecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence             1112235777777778899999999999999999999999999999999999999988765444444689999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      ++...++..++.+.++|..++++...+|+.+++.+..+|++++.+++.++|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  392 (395)
T PRK05732        341 QDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTLGW  392 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence            9999999999999999999989999999999999999999999999999985

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=5.7e-46  Score=379.38  Aligned_cols=378  Identities=32%  Similarity=0.549  Sum_probs=299.1

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      ||+||||||+|+++|+.|+++    | ++|+|+||.+.+....      ...+++..+++++.++|+++|+++.+.....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~~~~------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~   70 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL----GKIKIALIEANSPSAAQP------GFDARSLALSYGSKQILEKLGLWPKLAPFAT   70 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC----CCceEEEEeCCCccccCC------CCCCeeEeccHHHHHHHHHCCChhhhHhhcC
Confidence            799999999999999999997    9 9999999998763211      1235789999999999999999998877554


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       ....+.+++........+...+......++.++|..|.+.|.+.+.+..+++++++++|++++.               
T Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~---------------  134 (382)
T TIGR01984        71 -PILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR---------------  134 (382)
T ss_pred             -ccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---------------
Confidence             4556666554333333443323333445788999999999999998853499999999999976               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEe
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL  293 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~  293 (514)
                           .++.++|++.+|.++.||+ |+|||.+|.+|+.++.+.....++..++...++.+.+. ...+..+.+.++++++
T Consensus       135 -----~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  209 (382)
T TIGR01984       135 -----NQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALL  209 (382)
T ss_pred             -----cCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEEC
Confidence                 3456788888898999999 99999999999999877666667777777776654433 3445566778899999


Q ss_pred             ecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225          294 PIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  372 (514)
Q Consensus       294 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (514)
                      |.+++ ..+++|..+.+........+.+.+.+.+.+.+.    +.               +.             . +. 
T Consensus       210 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~-------------~-~~-  255 (382)
T TIGR01984       210 PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG----WR---------------LG-------------K-IT-  255 (382)
T ss_pred             cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh----hh---------------cc-------------C-eE-
Confidence            99988 778888876554444445566777777766442    00               00             0 11 


Q ss_pred             eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225          373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  452 (514)
Q Consensus       373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~  452 (514)
                      .......||+.....++|..+||+|+|||||+++|+.|||+|+||+||..|+++|..+..   +...+.+|+.|+++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~  332 (382)
T TIGR01984       256 QVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQF  332 (382)
T ss_pred             EcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHH
Confidence            112334588887778889999999999999999999999999999999999999988652   33347899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225          453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  502 (514)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g  502 (514)
                      ++..++..++.+.++|..++++...+|+.+++.+.++|++++.+++..+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~~  382 (382)
T TIGR01984       333 DQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRLARQAMG  382 (382)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999998775

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=1.3e-45  Score=377.66  Aligned_cols=384  Identities=30%  Similarity=0.490  Sum_probs=301.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ++++||+||||||+|+++|+.|++.    |++|+|+||++.+...++     ....+...++++++++|+++|+++++..
T Consensus         3 ~~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~   73 (388)
T PRK07608          3 HMKFDVVVVGGGLVGASLALALAQS----GLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDA   73 (388)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhh
Confidence            3568999999999999999999996    999999999987643221     2245678999999999999999998865


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ....+...+.++... ...+.+...........+.+++..+.+.|.+.+++.++++++ +++|++++.            
T Consensus        74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~------------  139 (388)
T PRK07608         74 ARLAPVYDMRVFGDA-HARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV------------  139 (388)
T ss_pred             hcCCcceEEEEEECC-CceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe------------
Confidence            544456667666443 223333322222334467899999999999999988778888 999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  290 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  290 (514)
                              .++.+.|++.+|.++.||+ |+|||.+|.+|+.++.......+...++...++.+..+ ...+.++.+++++
T Consensus       140 --------~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (388)
T PRK07608        140 --------DPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGIL  211 (388)
T ss_pred             --------cCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCE
Confidence                    3456788888888899999 99999999999999887766666666666666655443 4466777888999


Q ss_pred             EEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225          291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  370 (514)
Q Consensus       291 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (514)
                      +++|++++...+.|.............+++.+.+.+...+..                   ..+              .+
T Consensus       212 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~--------------~~  258 (388)
T PRK07608        212 ALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG-------------------RLG--------------RL  258 (388)
T ss_pred             EEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-------------------hcC--------------Cc
Confidence            999999998888887765443334445667777777664320                   000              01


Q ss_pred             eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225          371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  450 (514)
Q Consensus       371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r  450 (514)
                       ........||+.....+.|..+||+|+|||||.++|++|||+|+||+||..|+++|......+ +....++|+.|+++|
T Consensus       259 -~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R  336 (388)
T PRK07608        259 -ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERAR  336 (388)
T ss_pred             -eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHH
Confidence             111223347777777888999999999999999999999999999999999999998864222 333468999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225          451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  502 (514)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g  502 (514)
                      +++...++..++.+.++|..++++...+|+.++..+..+|.+++.++++.+|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  388 (388)
T PRK07608        337 REDILALQVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHALG  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999876

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=2.9e-46  Score=355.75  Aligned_cols=434  Identities=35%  Similarity=0.579  Sum_probs=365.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...|||+||||||+|+++|+.|...+....++|.|+|-...+.-+.|... +....+...+++.+..+|+.+|.|+.+..
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~-~~f~Nrvss~s~~s~~~fk~~~awd~i~~  112 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPS-ETFSNRVSSISPASISLFKSIGAWDHIFH  112 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccC-ccccceeecCCcchHHHHHhcCHHHHhhh
Confidence            34899999999999999999999876666789999999976554555333 56778889999999999999999999999


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHH--HHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~--~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .+..++..+.+|+......+.|..+... ...++.+....+...|+  ....+..+++|....++.++...+.     ..
T Consensus       113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~-----l~  186 (481)
T KOG3855|consen  113 DRYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEY-----LI  186 (481)
T ss_pred             hccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccc-----cC
Confidence            9999999999999988888888765433 24478899999988888  4445556799999999999876211     01


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEEEecC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFLP  286 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  286 (514)
                      +       .+.+..+.++..||..+.+|+ |+|||.+|.+|+..+++..++.|.++++.+++.++.+.   ..+|++|.|
T Consensus       187 ~-------~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP  259 (481)
T KOG3855|consen  187 K-------NDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP  259 (481)
T ss_pred             C-------CCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC
Confidence            1       124567889999999999999 99999999999999999999999999999999887632   789999999


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCC--CCcccc----ccccccCccccc
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSIS--SGSVDM----FSWFRGDATLSA  360 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~  360 (514)
                      .|++.+.|+.++..+++|.+.++....+..++++.|.+.++.+|...+....-...  ......    ..++....+.  
T Consensus       260 ~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~--  337 (481)
T KOG3855|consen  260 TGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRL--  337 (481)
T ss_pred             CCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcc--
Confidence            99999999999999999999999999999999999999999998533322211100  001101    1121111111  


Q ss_pred             cccccCCCceeeeccceee-eecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcch
Q 010225          361 KECFEVPPRVVKLASERMV-FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE  439 (514)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~  439 (514)
                       .....|+.+.++.++... ||+.-.++..++.+|+.|+|||||.++|++|||.|++..|+..|.+.|.++..+|.|+++
T Consensus       338 -~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS  416 (481)
T KOG3855|consen  338 -ANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS  416 (481)
T ss_pred             -cccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence             122688889998887666 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          440 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      ..-|+.|+.+|.+....++...+.+.++|..+.++...+|...|...++++++++.||...++-
T Consensus       417 ~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~  480 (481)
T KOG3855|consen  417 VEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK  480 (481)
T ss_pred             hhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999998864

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=1.5e-43  Score=375.67  Aligned_cols=377  Identities=23%  Similarity=0.346  Sum_probs=289.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++++.+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~----G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~   73 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY----GVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLP   73 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHh
Confidence            4568999999999999999999996    9999999999876          4456789999999999999999999888


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ... +...+.+++..+.....+.....  ......+.+++..+++.|.+.+.+.++++|+++++|+++++          
T Consensus        74 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~----------  142 (538)
T PRK06183         74 HTT-PNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ----------  142 (538)
T ss_pred             hcc-cCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE----------
Confidence            665 55667777655543334432111  11223366889999999999998875699999999999987          


Q ss_pred             CCCccccccccCCeeEEEeC--CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEE
Q 010225          211 STPSATTLFTKGHLAKLDLS--DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQ  282 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~--~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  282 (514)
                                +++.+++++.  +|  .+++||+ |+|||.+|.||+.++....+..+...++...+......   ...+.
T Consensus       143 ----------~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (538)
T PRK06183        143 ----------DDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ  212 (538)
T ss_pred             ----------cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE
Confidence                      3455777765  56  3799999 99999999999999988877777666666554332211   34556


Q ss_pred             EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225          283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  362 (514)
Q Consensus       283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      ++.+.+++.++|.+++..++.+...+..... ...+.+.+.+.+..     |...+.                       
T Consensus       213 ~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~~-----------------------  263 (538)
T PRK06183        213 YCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLASPENVWRLLAP-----WGPTPD-----------------------  263 (538)
T ss_pred             EECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCCHHHHHHHHHh-----hCCCCc-----------------------
Confidence            6778899999999888777766654332111 11233333333322     211000                       


Q ss_pred             cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225          363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  442 (514)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~  442 (514)
                             ..++ .....|.+..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ..+.+
T Consensus       264 -------~~~~-~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~  332 (538)
T PRK06183        264 -------DAEL-IRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDAL  332 (538)
T ss_pred             -------ceEE-EEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHH
Confidence                   0011 122346666677889999999999999999999999999999999999999999876532   24789


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          443 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       443 l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      |+.|+++|++++..++..+..+.++++..++....+|+.+|..+...|.+++.++...++..
T Consensus       333 L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~  394 (538)
T PRK06183        333 LDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM  394 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999998777654

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=5.3e-43  Score=368.25  Aligned_cols=371  Identities=20%  Similarity=0.272  Sum_probs=285.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ++||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~   67 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA----GVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKG   67 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhc
Confidence            58999999999999999999996    9999999999876          456789999999999999999999998765


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      . ++....++....  ...+.... ......+.+++..+.+.|.+.+++.+ ++++++++|+++++              
T Consensus        68 ~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~--------------  128 (493)
T PRK08244         68 R-KLPSGHFAGLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ--------------  128 (493)
T ss_pred             c-cccceEEecccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------
Confidence            4 444455543221  12222111 12234578999999999999998887 99999999999986              


Q ss_pred             cccccccCCeeEEEeC--CC-cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCc
Q 010225          215 ATTLFTKGHLAKLDLS--DG-TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP  289 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g-~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~  289 (514)
                            .++.+++.+.  +| .+++||+ |+|||.+|.||++++++..+..+...++.+.+....+. ...+.++.+.++
T Consensus       129 ------~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  202 (493)
T PRK08244        129 ------DGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGG  202 (493)
T ss_pred             ------cCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCce
Confidence                  3345555553  45 4799999 99999999999999988887777777777776654433 345666788899


Q ss_pred             eEEeecCCCceEEEEEcCccch-HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225          290 IALLPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  368 (514)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      ++++|++++..++++..+.... ......+.+++.+.+.+.+....                   +           .  
T Consensus       203 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~-----------~--  250 (493)
T PRK08244        203 VMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDF-------------------G-----------L--  250 (493)
T ss_pred             EEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCC-------------------C-----------c--
Confidence            9999999888887775543221 11223466777777766432000                   0           0  


Q ss_pred             ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                         ....+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|..+++..   ....+|+.|++
T Consensus       251 ---~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~  324 (493)
T PRK08244        251 ---NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHA  324 (493)
T ss_pred             ---CCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHH
Confidence               001122347777777889999999999999999999999999999999999999999988532   34789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      +|++.+..++..++....++... ++...+|+.+.. +...+.+++.+.+..+|++
T Consensus       325 eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~-~~~~~~~~~~~~~~~~~~~  378 (493)
T PRK08244        325 ERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLSD-LLGFPEVNRYLAGQISALD  378 (493)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHHH-HhcchHHHHHHHHHHhcCC
Confidence            99999999999999999998754 777888987554 4457889999988888776

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=8.8e-43  Score=363.25  Aligned_cols=367  Identities=24%  Similarity=0.279  Sum_probs=284.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+|+++|+.|++.    |++|+||||.+.+.         ....++..++++++++|+++|+++.+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~----G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~   68 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA----GVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQ   68 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhc
Confidence            358999999999999999999996    99999999988651         12346789999999999999999998875


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCC-CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      .. ......+ .     ...++..... ..++++.+.+..+++.|.+.+++.+ ++|+++++|+++++            
T Consensus        69 ~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~------------  128 (488)
T PRK06834         69 GQ-VAQVTGF-A-----ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ------------  128 (488)
T ss_pred             CC-cccccee-e-----eEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE------------
Confidence            43 2211111 0     1111111111 2245677899999999999999887 99999999999987            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceE
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIA  291 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  291 (514)
                              +++.+.+++.+|.+++||+ |+|||.+|.+|+.+++...++.+...++.+.+..+.++. ....+.+.+...
T Consensus       129 --------~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~  199 (488)
T PRK06834        129 --------DDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHA  199 (488)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEE
Confidence                    4466788888888899999 999999999999999999998888888888877654321 112344567777


Q ss_pred             EeecC-CCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225          292 LLPIG-DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  370 (514)
Q Consensus       292 ~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (514)
                      +.|.. ++..+++|..+...  .....+.+++...+.+.+...+..                                  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~~~~~----------------------------------  243 (488)
T PRK06834        200 FGRLEDEGPVRVMVTEKQVG--ATGEPTLDDLREALIAVYGTDYGI----------------------------------  243 (488)
T ss_pred             EeccCCCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHhhCCCCcc----------------------------------
Confidence            78876 56777777754332  122456778877777754311110                                  


Q ss_pred             eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225          371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  450 (514)
Q Consensus       371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r  450 (514)
                       ....+...|++..+.+++|..|||+|+|||||.++|+.|||+|++|+||.+|+|+|...++..   +...+|+.|+++|
T Consensus       244 -~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eR  319 (488)
T PRK06834        244 -HSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAER  319 (488)
T ss_pred             -ccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Confidence             011123458888888999999999999999999999999999999999999999999988632   3488999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      ++.+..++..+..+..++. .++....+|+.++.++...+. ++.+...++|+.
T Consensus       320 rp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~  371 (488)
T PRK06834        320 HPVAARVLRNTMAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLD  371 (488)
T ss_pred             HHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence            9999999999999988887 678889999999998887655 888888888875

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-43  Score=356.60  Aligned_cols=378  Identities=16%  Similarity=0.201  Sum_probs=273.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .||+||||||+||++|+.|++.    |++|+||||.+..          ...+.+..++++++++|+++|+++.+.+...
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~   66 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY----GHEPTLIERAPEL----------RTGGYMVDFWGVGYEVAKRMGITDQLREAGY   66 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC----CCceEEEeCCCCc----------cCCCeEEeccCcHHHHHHHcCCHHHHHhccC
Confidence            4899999999999999999996    9999999999765          2345678889999999999999999987654


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCC--cccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       ++..+.+++.++.....+.......  ....+.++|..|.+.|.+.+.. + ++|+++++|++++.             
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~-v~i~~~~~v~~i~~-------------  130 (391)
T PRK07588         67 -QIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q-VETIFDDSIATIDE-------------  130 (391)
T ss_pred             -CccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C-eEEEeCCEEeEEEE-------------
Confidence             6777888876554333333222211  1123679999999999987653 4 89999999999987             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccC-CCC-CceEEEEEEEecCC-CcceEEEec-CCC
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTG-WSY-SQNAIICTVEHNKE-NYCAWQRFL-PAG  288 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~g  288 (514)
                             +++.+.|.+++|+++++|+ |+|||.+|.||+.+...... ..+ +.......++...+ ....+..+. +++
T Consensus       131 -------~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  203 (391)
T PRK07588        131 -------HRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGR  203 (391)
T ss_pred             -------CCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCC
Confidence                   4467889999999999999 99999999999986322221 112 22222222221111 233344443 566


Q ss_pred             ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225          289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  368 (514)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (514)
                      ++.++|+.++...++|.......  ....+.+...+.+.+.+. .|....       ...++..                
T Consensus       204 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~-------~~~~~~~----------------  257 (391)
T PRK07588        204 QVARVALRGDRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFG-DVGWET-------PDILAAL----------------  257 (391)
T ss_pred             EEEEEecCCCCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhc-cCCccH-------HHHHHhh----------------
Confidence            89999998887666665543321  122455667777777654 222210       0011110                


Q ss_pred             ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                        ... .....+++....+++|..+||+|+|||||.|+|+.|||+|+||+||..|++.|....   .+  .+.+|+.|++
T Consensus       258 --~~~-~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~  329 (391)
T PRK07588        258 --DDV-EDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEK  329 (391)
T ss_pred             --hcc-cchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHH
Confidence              000 001112233334677899999999999999999999999999999999999998632   13  3789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCC
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  505 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~  505 (514)
                      .|++++..++..++.+.++|+..+++...+|+.++..++ .|++++.+++.....+.
T Consensus       330 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~  385 (391)
T PRK07588        330 RLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDF  385 (391)
T ss_pred             HHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccCCC
Confidence            999999999999999999999999999999999999999 89999999887765553

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=8.3e-42  Score=349.11  Aligned_cols=369  Identities=20%  Similarity=0.305  Sum_probs=259.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +.++||+||||||+|+++|+.|++.    |++|+|||+.+.+          ...+++..+++++.++|+++|+++.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~~~~~~l~~~~~~~L~~lGl~~~~~~   68 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGAR----GHSVTVVERAARN----------RAQNGADLLKPSGIGVVRAMGLLDDVFA   68 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhc----CCcEEEEeCCCcc----------cCCCcccccCccHHHHHHHcCCHHHHHh
Confidence            4568999999999999999999996    9999999999976          2233456799999999999999999887


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ........+.++.. +.....++........+.+.++|..|.+.|.+.+...++++++++++|++++..           
T Consensus        69 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-----------  136 (388)
T PRK07045         69 AGGLRRDAMRLYHD-KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERD-----------  136 (388)
T ss_pred             cccccccceEEecC-CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-----------
Confidence            55433445555432 222222222111111223568999999999999977666999999999999871           


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh-CCCccCCCCCceEEEEEEEecCCC-cceEEEecC-CC
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP-AG  288 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g  288 (514)
                      +       ++..+.|++.+|+++.+|+ |+|||.+|.+|+++ +.......|....+.+.+...... .....++.+ .+
T Consensus       137 ~-------~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (388)
T PRK07045        137 A-------DGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQG  209 (388)
T ss_pred             C-------CCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCc
Confidence            1       1224578888999999999 99999999999975 544444444444444555433222 222223333 46


Q ss_pred             ceEEeecCCCceEEEEEcCccchHH-hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225          289 PIALLPIGDNFSNIVWTMNPKDASD-CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  367 (514)
Q Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      +.+++|++++..+++|..+.+.... ....+.+.+.+.+...+.    +..       .+.++.                
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~----------------  262 (388)
T PRK07045        210 LAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DES-------ADAMAA----------------  262 (388)
T ss_pred             eEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcC----ccc-------hHHHhc----------------
Confidence            6789999888878888776543322 122334455554443211    110       000000                


Q ss_pred             CceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 010225          368 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  447 (514)
Q Consensus       368 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~  447 (514)
                         .........+|+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..++....  ....+|+.|+
T Consensus       263 ---~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye  337 (388)
T PRK07045        263 ---IGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFE  337 (388)
T ss_pred             ---cCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHH
Confidence               00011112346666667889999999999999999999999999999999999999998764322  2478999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          448 AERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       448 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                      ++|+++...++..++.+.+.|+...+.....|.++...-
T Consensus       338 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (388)
T PRK07045        338 RIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQTSG  376 (388)
T ss_pred             HHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhccc
Confidence            999999999999999999999998888888777766543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-40  Score=354.44  Aligned_cols=369  Identities=20%  Similarity=0.273  Sum_probs=273.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+||||||+||++|+.|++.    |++|+||||.+..          ...+++..++++++++|+++|+++.+.+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~   86 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQ----GVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVD   86 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHh
Confidence            4678999999999999999999996    9999999999865          3456789999999999999999999887


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCC-C-CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARD-V-NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ... ......++...+ ....+.... . ...+..+.+++..+++.|.+.+.+.++++|+++++|++++.          
T Consensus        87 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~----------  154 (547)
T PRK08132         87 KGV-SWNVGKVFLRDE-EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ----------  154 (547)
T ss_pred             hCc-eeeceeEEeCCC-eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE----------
Confidence            654 232223333221 122222111 1 11222456889999999999998876699999999999987          


Q ss_pred             CCCccccccccCCeeEEEe--CCCc-EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEec
Q 010225          211 STPSATTLFTKGHLAKLDL--SDGT-SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFL  285 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~--~~g~-~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  285 (514)
                                .++.+.+.+  .+|. +++||+ |+|||.+|.||+.+++...+..+...++...+..+.+. ...+.++.
T Consensus       155 ----------~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~  224 (547)
T PRK08132        155 ----------HDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD  224 (547)
T ss_pred             ----------cCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe
Confidence                      334455444  3554 699999 99999999999999998888777666666665554332 22233332


Q ss_pred             ----CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225          286 ----PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK  361 (514)
Q Consensus       286 ----~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                          ++..+++.|.+++.+++.+........ ....+.+.+.+.+.+.+.    ..                        
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~------------------------  275 (547)
T PRK08132        225 PPFHPGQSVLLHRQPDNVWRIDFQLGWDADP-EAEKKPENVIPRVRALLG----ED------------------------  275 (547)
T ss_pred             ccCCCCcEEEEEeCCCCeEEEEEecCCCCCc-hhhcCHHHHHHHHHHHcC----CC------------------------
Confidence                334556666666766665544322111 112345666666666432    00                        


Q ss_pred             ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225          362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  441 (514)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~  441 (514)
                          .+   .+ ..+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ..+.
T Consensus       276 ----~~---~~-~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~  344 (547)
T PRK08132        276 ----VP---FE-LEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDS  344 (547)
T ss_pred             ----CC---ee-EEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHH
Confidence                00   00 1122347777778899999999999999999999999999999999999999999987643   3488


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHH
Q 010225          442 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII  497 (514)
Q Consensus       442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~  497 (514)
                      +|+.|+++|+++++.++..+..+..+++..++....+|+.++..+...+.+++.+-
T Consensus       345 lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  400 (547)
T PRK08132        345 LLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARRLVN  400 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHHHHHHh
Confidence            99999999999999999999999999998888888999999999988888876663

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=1.5e-40  Score=355.49  Aligned_cols=353  Identities=20%  Similarity=0.291  Sum_probs=260.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      ++.++||+||||||+||++|+.|++.   .|++|+|||+.+.+          ...+++.+|+++++++|+++|+++.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~---~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~   95 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAF---PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERIL   95 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcC---CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHH
Confidence            45689999999999999999999993   29999999999865          456778999999999999999999998


Q ss_pred             hhhccCcceEEEEeCCCcc--eee----ec-cCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCC
Q 010225          132 QHRHAYFDKMQVWDYTGLG--YTK----YN-ARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPS  203 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~  203 (514)
                      +.+. ....+.+|+..+..  .+.    +. ........+...+++..+++.|++.+.+.+ .+++.++++|++++.+  
T Consensus        96 ~~g~-~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~--  172 (634)
T PRK08294         96 KEAY-WINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVD--  172 (634)
T ss_pred             hhcc-cccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEEC--
Confidence            8666 66677788644321  110    00 000011122367899999999999998776 3688999999999871  


Q ss_pred             CCCcccCCCCccccccccCCeeEEEeC------CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec
Q 010225          204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN  274 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~  274 (514)
                             .+        .+..++|++.      +|  ++++||+ |+|||++|.||+++++...+..+...+....+...
T Consensus       173 -------~~--------~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~  237 (634)
T PRK08294        173 -------EE--------GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV  237 (634)
T ss_pred             -------CC--------CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence                   10        2245677664      35  4799999 99999999999999998888877776665555432


Q ss_pred             C--CC-cceEE-EecCCCceEEeecCCC-ceEEEEEcCc---cchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 010225          275 K--EN-YCAWQ-RFLPAGPIALLPIGDN-FSNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV  346 (514)
Q Consensus       275 ~--~~-~~~~~-~~~~~g~~~~~p~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (514)
                      .  +. ..... ...+.|.++++|.+++ ..++++....   .........+.+.+.+.+...+. .|...         
T Consensus       238 ~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~-p~~~~---------  307 (634)
T PRK08294        238 TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH-PYTLD---------  307 (634)
T ss_pred             cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC-CCCCc---------
Confidence            2  22 11111 2246789999999887 4666554322   11122345677888888877443 11000         


Q ss_pred             ccccccccCccccccccccCCCceeeeccceeeeeccccccccc----------ccCcEEEEcccccccCCcccccchhh
Q 010225          347 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLG  416 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~v~LvGDAAh~~~P~~GqG~~~a  416 (514)
                                              .....+...|++..+.+++|          ..+||+|+|||||.++|..|||+|++
T Consensus       308 ------------------------~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~g  363 (634)
T PRK08294        308 ------------------------VKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVS  363 (634)
T ss_pred             ------------------------eeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhH
Confidence                                    11223444577777776666          35899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010225          417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF  472 (514)
Q Consensus       417 l~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~  472 (514)
                      |+||.+|+|+|..+++..   +..++|+.|+++|+++++.++..++.+.++|+...
T Consensus       364 iqDA~nLawkLa~vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~  416 (634)
T PRK08294        364 MQDGFNLGWKLAAVLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP  416 (634)
T ss_pred             HHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999988632   35889999999999999999999999999997754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=2.5e-40  Score=338.21  Aligned_cols=377  Identities=15%  Similarity=0.105  Sum_probs=263.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ++||+||||||+||++|+.|++.    |++|+|+||.+....        ....++..+.++++++|+++|+++.+.+..
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~   69 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA----GIDSVVLERRSREYV--------EGRIRAGVLEQGTVDLLREAGVGERMDREG   69 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc----CCCEEEEEcCCcccc--------ccccceeEECHhHHHHHHHcCChHHHHhcC
Confidence            57999999999999999999996    999999999985310        123345679999999999999999998765


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      . ....+.+++........+.  ..........+++..+.+.|++.+.+.+ ++++++++|++++.              
T Consensus        70 ~-~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~--------------  131 (392)
T PRK08243         70 L-VHDGIELRFDGRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHD--------------  131 (392)
T ss_pred             C-ccCcEEEEECCEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEe--------------
Confidence            5 5667777654332222222  1122233456678899999998888776 89999999999864              


Q ss_pred             cccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCC---CCCceEEEEEE-EecCCCcceEEEecC
Q 010225          215 ATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGW---SYSQNAIICTV-EHNKENYCAWQRFLP  286 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~  286 (514)
                           .+++.+.|++ .+|+  +++||+ |+|||.+|.+|++++......   .+.. .+.+.+ ..............+
T Consensus       132 -----~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  205 (392)
T PRK08243        132 -----FDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPF-GWLGILAEAPPVSDELIYANHE  205 (392)
T ss_pred             -----cCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCc-eEEEEeCCCCCCCCceEEeeCC
Confidence                 0123455665 4664  699999 999999999999996543211   1111 122221 111111122211223


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      .++.++.+.+++...+++..+...  .....+.+.+.+.+.+.+.. +...              .             +
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-~~~~--------------~-------------~  255 (392)
T PRK08243        206 RGFALCSMRSPTRSRYYLQCPLDD--KVEDWSDERFWDELRRRLPP-EDAE--------------R-------------L  255 (392)
T ss_pred             CceEEEecCCCCcEEEEEEecCCC--CcccCChhHHHHHHHHhcCc-cccc--------------c-------------c
Confidence            344444444555556666554332  12234556666777665541 1000              0             0


Q ss_pred             CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  446 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y  446 (514)
                         +.........+|+....+.+|..|||+|+|||||.++|+.|||+|+||+||..|+++|...++.+    .+++|+.|
T Consensus       256 ---~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Y  328 (392)
T PRK08243        256 ---VTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAY  328 (392)
T ss_pred             ---ccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHH
Confidence               00000111235666667788989999999999999999999999999999999999999987542    27899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          447 EAERKPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       447 ~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      +++|++++..++..++.+.++++.   ...+...+|+..|..+...|..+..+....+|+.
T Consensus       329 e~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK08243        329 SATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGLP  389 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence            999999999999999999999887   4557788999999999999999999999999873

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=8.7e-41  Score=352.03  Aligned_cols=339  Identities=24%  Similarity=0.334  Sum_probs=253.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+||++|+.|+++    |++|+||||.+.+          ...+++..++++++++|+++|+++++.+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~----Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~   67 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR----GVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAA   67 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhc
Confidence            358999999999999999999997    9999999999876          44567899999999999999999999886


Q ss_pred             hccCcceEEEEeCCCcc-eeeeccCC----CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          134 RHAYFDKMQVWDYTGLG-YTKYNARD----VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      .. ....+.+|...+.. ...+....    .......+.+++..+++.|.+.+.+.+ ++|+++++|+++++        
T Consensus        68 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~--------  137 (502)
T PRK06184         68 GG-LYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ--------  137 (502)
T ss_pred             Cc-cccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE--------
Confidence            65 45555566543321 11111100    011233578899999999999999886 99999999999987        


Q ss_pred             cCCCCccccccccCCeeEEEe---CCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCc-eEEEEEEEecCCCcceEEE
Q 010225          209 VDSTPSATTLFTKGHLAKLDL---SDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQR  283 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~---~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  283 (514)
                                  +++.+++.+   .++++++||+ |+|||.+|.||+++++...+..+.. .++.+.+.........+..
T Consensus       138 ------------~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (502)
T PRK06184        138 ------------DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ  205 (502)
T ss_pred             ------------cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE
Confidence                        334566666   5666899999 9999999999999999888877765 6666655544333333433


Q ss_pred             ec-CC-CceEEeecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccc
Q 010225          284 FL-PA-GPIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA  360 (514)
Q Consensus       284 ~~-~~-g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (514)
                      +. +. +.+.++|++++ .+.+.+..+...   ....+.+.+.+.+...+.  +.+                        
T Consensus       206 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~------------------------  256 (502)
T PRK06184        206 WPDGDMGMIALCPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERTG--RTD------------------------  256 (502)
T ss_pred             ccCCCCcEEEEEEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhcC--CCC------------------------
Confidence            33 33 67888898764 555555544321   223466777777665332  000                        


Q ss_pred             cccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchH
Q 010225          361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA  440 (514)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~  440 (514)
                           +   ......+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|..+++.    ..+
T Consensus       257 -----~---~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----~~~  324 (502)
T PRK06184        257 -----I---RLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG----APE  324 (502)
T ss_pred             -----c---ceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC----CCH
Confidence                 0   0111223345777777788899999999999999999999999999999999999999988764    237


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225          441 SLLKKYEAERKPANIVMMAVLDGFQKAYS  469 (514)
Q Consensus       441 ~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~  469 (514)
                      .+|+.|+++|++++..++..+..+...+.
T Consensus       325 ~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~  353 (502)
T PRK06184        325 ALLDTYEEERRPVAAAVLGLSTELLDAIK  353 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999988887764

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=4e-41  Score=342.46  Aligned_cols=352  Identities=18%  Similarity=0.245  Sum_probs=258.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .||+||||||+||++|+.|++.    |++|+||||++.+.          ..++++.+++++++.|+.+|+++.+.....
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~----------~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~   66 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ----GHEVKVFEKNESVK----------EVGAGIGIGDNVIKKLGNHDLAKGIKNAGQ   66 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccc----------ccccceeeChHHHHHHHhcChHHHHHhcCC
Confidence            3799999999999999999996    99999999999773          345689999999999999999988876554


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       +...+.+++.++.....+..   .....++.++|..|.+.|.+.+..   .+|+++++|++++.               
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~---------------  124 (373)
T PRK06753         67 -ILSTMNLLDDKGTLLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIEN---------------  124 (373)
T ss_pred             -cccceeEEcCCCCEEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEe---------------
Confidence             67778888765432222211   223456789999999999998763   67999999999976               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-C-CcceEEEecCCCceEE
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E-NYCAWQRFLPAGPIAL  292 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~  292 (514)
                           +++.++|++++|+++.+|+ |+|||.+|.+|+.++........+...+.+.++... + .......+.+.+++++
T Consensus       125 -----~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  199 (373)
T PRK06753        125 -----ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGI  199 (373)
T ss_pred             -----cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEE
Confidence                 4466888999999999999 999999999999997655444445555555544322 1 2344455677889999


Q ss_pred             eecCCCceEEEEEcCccch-HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225          293 LPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  371 (514)
Q Consensus       293 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (514)
                      +|..++...+++....... ......+.+    .+.+.+. +|.+..       .+.++.    .          +.   
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~-~~~~~~-------~~~~~~----~----------~~---  250 (373)
T PRK06753        200 VPLLNNQAYWFITINAKERDPKYSSFGKP----HLQAYFN-HYPNEV-------REILDK----Q----------SE---  250 (373)
T ss_pred             EEcCCCeEEEEEEeccccCCcccccccHH----HHHHHHh-cCChHH-------HHHHHh----C----------Cc---
Confidence            9999887666655543221 111122222    3333333 332220       111111    0          00   


Q ss_pred             eeccceeeeeccc-ccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225          372 KLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  450 (514)
Q Consensus       372 ~~~~~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r  450 (514)
                         .....++++. .+.++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|...     +.  +.+|+.|++.|
T Consensus       251 ---~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~~--~~al~~Y~~~r  320 (373)
T PRK06753        251 ---TGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----DF--EKALQRYDKIR  320 (373)
T ss_pred             ---ccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----cH--HHHHHHHHHHh
Confidence               0001122221 2356788999999999999999999999999999999999999642     33  78999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhc
Q 010225          451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ  487 (514)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~  487 (514)
                      ++++..++..++.+.++++..+++...+|+.+|..+.
T Consensus       321 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~  357 (373)
T PRK06753        321 VKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMP  357 (373)
T ss_pred             hHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999998774

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=1e-40  Score=348.35  Aligned_cols=396  Identities=17%  Similarity=0.170  Sum_probs=272.8

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      .....+||+||||||+|+++|+.|++.    |++|+|+||+...          .....+..+++++.++|+++|+++.+
T Consensus        39 ~~~~~~DViIVGAG~aGlalA~aLa~~----G~~V~vlEr~~~~----------~~~~~g~~L~p~g~~~L~~LGl~d~l  104 (514)
T PLN02985         39 RKDGATDVIIVGAGVGGSALAYALAKD----GRRVHVIERDLRE----------PERMMGEFMQPGGRFMLSKLGLEDCL  104 (514)
T ss_pred             CcCCCceEEEECCCHHHHHHHHHHHHc----CCeEEEEECcCCC----------CccccccccCchHHHHHHHcCCcchh
Confidence            345678999999999999999999996    9999999998643          22345788999999999999999988


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCC--CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARD--VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      ......+...+.+++........++...  ......++.++|.+|.+.|++.+.+.++++++++ +++++..        
T Consensus       105 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~--------  175 (514)
T PLN02985        105 EGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE--------  175 (514)
T ss_pred             hhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE--------
Confidence            7755556777777764332233443221  1223456889999999999999988877998877 5777754        


Q ss_pred             cCCCCccccccccCC--eeEEEeCCCc--EEEeeE-EEecCCCchhhhhhCCCccC-CCCCceEEEEEEEecCCCcceEE
Q 010225          209 VDSTPSATTLFTKGH--LAKLDLSDGT--SLYAKL-VGADGGKSRVRELAGFKTTG-WSYSQNAIICTVEHNKENYCAWQ  282 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~--~~~v~~~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  282 (514)
                                 +++.  ++++...+|+  ++.||+ |+|||.+|.+|+.++..... ..+...++........+ ...+.
T Consensus       176 -----------~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~  243 (514)
T PLN02985        176 -----------EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEP-EKLHL  243 (514)
T ss_pred             -----------cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCC-CcceE
Confidence                       0122  2444445665  467999 99999999999999754432 22222222111211111 33345


Q ss_pred             EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccc-cccCcccccc
Q 010225          283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW-FRGDATLSAK  361 (514)
Q Consensus       283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  361 (514)
                      ++.+++++.++|++++..++.+..+.+...   .....++...+.+.+.    +.       ..+.+.. +...      
T Consensus       244 ~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----p~-------~p~~l~~~f~~~------  303 (514)
T PLN02985        244 IMSKPSFTMLYQISSTDVRCVFEVLPDNIP---SIANGEMSTFVKNTIA----PQ-------VPPKLRKIFLKG------  303 (514)
T ss_pred             EcCCCceEEEEEeCCCeEEEEEEEeCCCCC---CcChhhHHHHHHhccc----cc-------cCHHHHHHHHhh------
Confidence            567788999999998888888877654321   1122333333332111    00       0000111 0000      


Q ss_pred             ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225          362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  441 (514)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~  441 (514)
                          +.    .. .....+|....+...+..++++|+|||||+++|++|||+|+|++||..|++.|.....-........
T Consensus       304 ----~~----~~-~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~  374 (514)
T PLN02985        304 ----ID----EG-AHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSE  374 (514)
T ss_pred             ----cc----cc-cceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHH
Confidence                00    00 0111233333333445568999999999999999999999999999999999987421111112368


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225          442 LLKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  510 (514)
Q Consensus       442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  510 (514)
                      +|+.|++.|++++..++..+..++++|.. ++...+.+|+..|..+..-....+-.+..++|+.+.|+.|
T Consensus       375 aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l  444 (514)
T PLN02985        375 VIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL  444 (514)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence            99999999999999999999999999974 5666899999999998888888889999999999998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.3e-40  Score=341.18  Aligned_cols=352  Identities=17%  Similarity=0.177  Sum_probs=246.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+||||||+||++|+.|++.    |++|+|+||.+.+          ...++++.++++++++|+++|+++++.....
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~----G~~V~i~E~~~~~----------~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~   68 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR----GWAVTIIEKAQEL----------SEVGAGLQLAPNAMRHLERLGVADRLSGTGV   68 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcc----------CcCCccceeChhHHHHHHHCCChHHHhhccc
Confidence            5799999999999999999996    9999999998866          3456789999999999999999999987655


Q ss_pred             cCcceEEEEeCCCccee-eeccCCC---CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          136 AYFDKMQVWDYTGLGYT-KYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                       ....+.++++...... .......   ......+.++|..|.+.|.+.+.+.++++++++++|++++.           
T Consensus        69 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~-----------  136 (400)
T PRK06475         69 -TPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ-----------  136 (400)
T ss_pred             -CcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec-----------
Confidence             3445555543322111 1111000   01112346899999999999998765599999999999976           


Q ss_pred             CCccccccccCCeeEEEe---CCCcEEEeeE-EEecCCCchhhhhhCCCccCCCC-CceEEEEEEEecCC----------
Q 010225          212 TPSATTLFTKGHLAKLDL---SDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE----------  276 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~---~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~----------  276 (514)
                               .++.+++++   .+++++.||+ |+|||.+|.||+.++..  ...| +..++.+.++.+..          
T Consensus       137 ---------~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  205 (400)
T PRK06475        137 ---------TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS--KARFSGHIAWRTTLAADALPASFLSAMPE  205 (400)
T ss_pred             ---------CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC--CCCcCCceEEEEEeehhhcchhhhhhccc
Confidence                     335566665   3445799999 99999999999998652  2333 56666666654321          


Q ss_pred             CcceEEEecCCCceEEeecCCCceEEEEEcC-ccchHH-hh-CCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccc
Q 010225          277 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMN-PKDASD-CK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  353 (514)
Q Consensus       277 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (514)
                      ......++.+++++..+|++++....++... ...... .. ..+.    +.+.+.+. +|.+...           .  
T Consensus       206 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-----------~--  267 (400)
T PRK06475        206 HKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDK----AHLKSIYA-DWNKPVL-----------Q--  267 (400)
T ss_pred             CCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCH----HHHHHHhc-CCChHHH-----------H--
Confidence            1223456678899999999876443333222 111111 11 1122    23333333 4544311           1  


Q ss_pred             cCccccccccccCCCceeeeccceeeeeccccccccc-ccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh
Q 010225          354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  432 (514)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~  432 (514)
                                      +.+.......||+......+| ..+||+|||||||+++|+.|||+|+||+||..|+++|..   
T Consensus       268 ----------------~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~---  328 (400)
T PRK06475        268 ----------------ILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS---  328 (400)
T ss_pred             ----------------HHhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---
Confidence                            111222334578776665555 468999999999999999999999999999999999963   


Q ss_pred             cCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          433 VGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       433 ~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                        .++  ..+|+.|++.|+++++.++..++. ...+...+++....|+..+...
T Consensus       329 --~~~--~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~  377 (400)
T PRK06475        329 --DDQ--SAGLKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIR  377 (400)
T ss_pred             --CCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhc
Confidence              144  689999999999999999999874 4455445677888899888655

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=9.4e-40  Score=340.09  Aligned_cols=338  Identities=18%  Similarity=0.200  Sum_probs=253.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+.+|+++.+..
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~----Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~   68 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLC----GLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYP   68 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHc----CCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHh
Confidence            3468999999999999999999996    9999999999876          3456788999999999999999999877


Q ss_pred             hhccCcceEEEEeCCCcceee---eccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          133 HRHAYFDKMQVWDYTGLGYTK---YNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      ... +.....+|.........   +........+..+.+++..++..|.+.+++.| ++|+++++|+++++         
T Consensus        69 ~~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~---------  137 (487)
T PRK07190         69 LGK-PCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL---------  137 (487)
T ss_pred             hCc-cceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------
Confidence            554 45555556533221101   00001011223467889999999999999887 99999999999987         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC--CC-cceEEEec
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAWQRFL  285 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~  285 (514)
                                 +++.+.+.+.+|++++|++ |+|||.+|.+|+.+++++.+..+...+....+..+.  +. .....+..
T Consensus       138 -----------~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  206 (487)
T PRK07190        138 -----------NQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQA  206 (487)
T ss_pred             -----------cCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEc
Confidence                       3355667777888999999 999999999999999988876665555555444432  22 12222234


Q ss_pred             CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225          286 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  365 (514)
Q Consensus       286 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      +.+.++++|.+++..++.....      ....+.+++.+.+...+. ++.                              
T Consensus       207 ~~g~~~~~p~~~~~~r~~~~~~------~~~~t~~~~~~~l~~~~~-~~~------------------------------  249 (487)
T PRK07190        207 ETSDVAWIPREGEIDRFYVRMD------TKDFTLEQAIAKINHAMQ-PHR------------------------------  249 (487)
T ss_pred             CCCCEEEEECCCCEEEEEEEcC------CCCCCHHHHHHHHHHhcC-CCC------------------------------
Confidence            6788999999877665443321      123466677777765332 000                              


Q ss_pred             CCCceeeeccceeeeecccccccccc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225          366 VPPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  444 (514)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~  444 (514)
                      +  . .....+...|++..+.+++|. .|||+|+|||||.++|+.|||+|++|+||.+|+|+|...++..   +...+|+
T Consensus       250 ~--~-~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLd  323 (487)
T PRK07190        250 L--G-FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQ  323 (487)
T ss_pred             C--c-eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHH
Confidence            0  0 112334557999999999997 7999999999999999999999999999999999999887643   3489999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225          445 KYEAERKPANIVMMAVLDGFQKAYS  469 (514)
Q Consensus       445 ~Y~~~r~~~~~~~~~~~~~~~~~~~  469 (514)
                      .|+.+|++.+..++..++.+.++..
T Consensus       324 tY~~eR~p~a~~vl~~t~~~~~~~~  348 (487)
T PRK07190        324 SYEAERKPVAQGVIETSGELVRSTK  348 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999998888764

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-40  Score=333.55  Aligned_cols=363  Identities=20%  Similarity=0.227  Sum_probs=260.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +..||+||||||+||++|+.|++.    |++|+|||+.+.+          ...+.+..+++++.++|+++|+++.+.+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~----g~~v~v~E~~~~~----------~~~g~g~~l~~~~~~~l~~~gl~~~~~~~   68 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA----GIAVDLVEIDPEW----------RVYGAGITLQGNALRALRELGVLDECLEA   68 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCC----------ccCCceeeecHHHHHHHHHcCCHHHHHHh
Confidence            457999999999999999999996    9999999999876          33466899999999999999999988876


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCC--CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .. +...+.+++..+.....++.....  ..+....+.|..|.+.|.+.+.+.+ ++|+++++|++++.           
T Consensus        69 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~-----------  135 (375)
T PRK06847         69 GF-GFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ-----------  135 (375)
T ss_pred             CC-CccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE-----------
Confidence            55 566777776554433232211111  1122456899999999999998876 99999999999976           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh-CCCccCCCCCceEEEEEEEecCCCcceEEEecCCCc
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP  289 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  289 (514)
                               .++.+.+.+.+|+++.||+ |+|||.+|.+|+.+ +........+...+.+.++..........+..+++.
T Consensus       136 ---------~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (375)
T PRK06847        136 ---------DDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTK  206 (375)
T ss_pred             ---------cCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcE
Confidence                     3456788888999999999 99999999999988 433333333444555555543332233455567788


Q ss_pred             eEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225          290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  369 (514)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (514)
                      +.++|.+++...+++..+....   ...+.+.+.+.+.+.+. .|.++.          ...+...              
T Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~--------------  258 (375)
T PRK06847        207 AGVVPLSEDLMYLFVTEPRPDN---PRIEPDTLAALLRELLA-PFGGPV----------LQELREQ--------------  258 (375)
T ss_pred             EEEEcCCCCeEEEEEeccCccc---ccCChHHHHHHHHHHHh-hcCchH----------HHHHHHh--------------
Confidence            8899998775544443332221   22345566666666554 443310          0000000              


Q ss_pred             eeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225          370 VVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  448 (514)
Q Consensus       370 ~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~  448 (514)
                      + ........+|+.... ..+|..+||+|+|||||.++|+.|||+|+||+||..|+++|.+.    .+  .+.+|+.|++
T Consensus       259 ~-~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~  331 (375)
T PRK06847        259 I-TDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYA  331 (375)
T ss_pred             c-CCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHH
Confidence            0 000111224544433 45688999999999999999999999999999999999999762    23  3789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHhc
Q 010225          449 ERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQ  487 (514)
Q Consensus       449 ~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~~~  487 (514)
                      +|+++++.++..++.+..++....+   ....+|++++.++.
T Consensus       332 ~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T PRK06847        332 RRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLAQ  373 (375)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhcC
Confidence            9999999999999999999876655   77788888776554

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=5.9e-40  Score=336.62  Aligned_cols=357  Identities=18%  Similarity=0.246  Sum_probs=254.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ++.||+||||||+||++|+.|++.    |++|+||||.+.+          ...++++.+++++.++|+++|+++.+...
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~----g~~v~v~Er~~~~----------~~~g~gi~l~~~~~~~l~~lg~~~~~~~~   68 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQ----GIKVKLLEQAAEI----------GEIGAGIQLGPNAFSALDALGVGEAARQR   68 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC----CCcEEEEeeCccc----------ccccceeeeCchHHHHHHHcCChHHHHhh
Confidence            467999999999999999999996    9999999999876          33466899999999999999999988775


Q ss_pred             hccCcceEEEEeCC-CcceeeeccCCC---CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          134 RHAYFDKMQVWDYT-GLGYTKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      .. ....+.+++.. +.....++....   ......+.++|.+|.+.|.+.+.+.++++++++++|++++.         
T Consensus        69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~---------  138 (396)
T PRK08163         69 AV-FTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ---------  138 (396)
T ss_pred             cc-CCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---------
Confidence            54 56667776542 222222211110   11123457899999999999998876799999999999976         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-----cceEEE
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQR  283 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  283 (514)
                                 .++.+.+.+.+|+++.||+ |+|||.+|.+|+.+... .....+...+.+.++.....     .....+
T Consensus       139 -----------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
T PRK08163        139 -----------DGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLW  206 (396)
T ss_pred             -----------CCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEE
Confidence                       3456788888998999999 99999999999988432 22334455666666543211     123334


Q ss_pred             ecCCCceEEeecCCCc-eEEEEEcCccchHHh--hCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccc
Q 010225          284 FLPAGPIALLPIGDNF-SNIVWTMNPKDASDC--KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA  360 (514)
Q Consensus       284 ~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (514)
                      ..+.++++.+|+.++. .+++|..........  ...+.    +.+.+.|. +|.+...       +.++.         
T Consensus       207 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-------~~~~~---------  265 (396)
T PRK08163        207 AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSK----EEVLSYFE-GIHPRPR-------QMLDK---------  265 (396)
T ss_pred             EcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCH----HHHHHHHc-CCChHHH-------HHHhc---------
Confidence            5677888999997764 566666543322111  11122    23334343 3333210       01100         


Q ss_pred             cccccCCCceeeeccceeeeecc-cccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcch
Q 010225          361 KECFEVPPRVVKLASERMVFPLS-LKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE  439 (514)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~  439 (514)
                                   ......+++. ..+..+|..+||+|+|||||.|+|+.|||+|+||+||..|+++|...   ..++  
T Consensus       266 -------------~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~--  327 (396)
T PRK08163        266 -------------PTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGDA--  327 (396)
T ss_pred             -------------CCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---cccH--
Confidence                         0011112221 12456788999999999999999999999999999999999999753   2233  


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          440 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                      ..+|+.|+++|++++..++..++.+..+++.. +....+|+.++...
T Consensus       328 ~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~  373 (396)
T PRK08163        328 EAAFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGR  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhcc
Confidence            78999999999999999999999999999876 67788888777655

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=2.4e-39  Score=339.39  Aligned_cols=402  Identities=18%  Similarity=0.132  Sum_probs=262.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+|+++|+.|++.    |++|+|+||+....         .....|..+++++.++|+++|+++.+...
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~----G~~V~VlEr~~~~~---------~~r~~G~~L~p~g~~~L~~LGL~d~l~~i   98 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ----GRKVLMLERDLFSK---------PDRIVGELLQPGGVNALKELGMEECAEGI   98 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc----CCEEEEEccccccc---------cchhhhhhcCHHHHHHHHHCCChhhHhhc
Confidence            478999999999999999999996    99999999976210         11235678999999999999999988766


Q ss_pred             hccCcceEEEEeCCCcc-eeeeccCCCCCcccEEEEehHHHHHHHHHHH--hcCCCceEEcCCeeEEEeeCCCC---CCc
Q 010225          134 RHAYFDKMQVWDYTGLG-YTKYNARDVNKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSS---SSI  207 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~g~v~v~~~~~v~~v~~~~~~---~~~  207 (514)
                      .. ++..+.+++.++.. ...+     .....++.+++..|.+.|++.+  ...++++++.+ +|+++..++..   ...
T Consensus        99 ~~-~~~~~~v~~~~G~~~~i~~-----~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~  171 (567)
T PTZ00367         99 GM-PCFGYVVFDHKGKQVKLPY-----GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAY  171 (567)
T ss_pred             Cc-ceeeeEEEECCCCEEEecC-----CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeE
Confidence            65 57778887754432 2222     2233467789999999999888  33456888754 78887542110   011


Q ss_pred             ccCCCCcc------ccc-cccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEE-ecCCC-
Q 010225          208 SVDSTPSA------TTL-FTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN-  277 (514)
Q Consensus       208 ~~~~~~~~------~~~-~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~-  277 (514)
                      +++-..+.      +.+ .+.+....+...++.+++||+ |+|||.+|.+|+.++.......+...+....+. ...+. 
T Consensus       172 gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~  251 (567)
T PTZ00367        172 GVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKE  251 (567)
T ss_pred             EEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCC
Confidence            11000000      000 000001112222366899999 999999999999997654433343333222222 12222 


Q ss_pred             cceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225          278 YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT  357 (514)
Q Consensus       278 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                      .....++.++++++++|++++..++.+..+.....     +.++..+.+.+.+...+.+.       ..+.+...+    
T Consensus       252 ~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~-------l~~~f~~~l----  315 (567)
T PTZ00367        252 QHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPEN-------MRESFIRAS----  315 (567)
T ss_pred             CeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHH-------HHHHHHHhh----
Confidence            23344578899999999998876655444322110     11112222222111001000       000010000    


Q ss_pred             ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh-cCCC
Q 010225          358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA-VGAD  436 (514)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~-~~~~  436 (514)
                                    ........+|....+...+..++++|||||||+++|++|||+|+||+||..|++.|..... .+.|
T Consensus       316 --------------~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d  381 (567)
T PTZ00367        316 --------------KDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSID  381 (567)
T ss_pred             --------------cccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCC
Confidence                          0001122355555555667788999999999999999999999999999999999986432 1112


Q ss_pred             cc----hHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCC
Q 010225          437 IG----EASLLK----KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPL  508 (514)
Q Consensus       437 ~~----~~~~l~----~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~  508 (514)
                      .+    ...+|+    .|++.|++++..++..++.++++|+.     ..+|+..|..+..-.....-.+..++|+.+.|+
T Consensus       382 ~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~  456 (567)
T PTZ00367        382 QNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPG  456 (567)
T ss_pred             chhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcH
Confidence            21    156677    99999999999999999999999987     479999999998888888999999999999987


Q ss_pred             CC
Q 010225          509 PL  510 (514)
Q Consensus       509 ~~  510 (514)
                      .+
T Consensus       457 ~l  458 (567)
T PTZ00367        457 GL  458 (567)
T ss_pred             HH
Confidence            54

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=3.8e-40  Score=332.78  Aligned_cols=331  Identities=24%  Similarity=0.377  Sum_probs=226.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ++||+||||||+||++|+.|+++    |++|+||||++.+          ...+++..+.++++++|+++|+++.+....
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~----G~~v~i~E~~~~~----------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~   66 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARA----GIDVTIIERRPDP----------RPKGRGIGLSPNSLRILQRLGLLDEILARG   66 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHT----TCEEEEEESSSSC----------CCSSSSEEEEHHHHHHHHHTTEHHHHHHHS
T ss_pred             CceEEEECCCHHHHHHHHHHHhc----ccccccchhcccc----------cccccccccccccccccccccchhhhhhhc
Confidence            37999999999999999999997    9999999999987          445578999999999999999999988876


Q ss_pred             cc-CcceEEEEeC--CC-------cceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCC
Q 010225          135 HA-YFDKMQVWDY--TG-------LGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSS  204 (514)
Q Consensus       135 ~~-~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~  204 (514)
                      .. ......++..  +.       .....+.  ........+.++|..|.+.|.+.+++.| ++++++++|++++.    
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~----  139 (356)
T PF01494_consen   67 SPHEVMRIFFYDGISDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ----  139 (356)
T ss_dssp             EEECEEEEEEEEETTTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE----
T ss_pred             ccccceeeEeecccCCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc----
Confidence            42 2233344433  10       0111111  1123445678999999999999999988 99999999999987    


Q ss_pred             CCcccCCCCccccccccCCeeEEEe--C-CCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCC--ceEEEEEEEecCC
Q 010225          205 SSISVDSTPSATTLFTKGHLAKLDL--S-DGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE  276 (514)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~--~-~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~--~~~~~~~~~~~~~  276 (514)
                                      +.+.+.+.+  . +|.  +++||+ |+|||.+|.+|+.++.........  ..++...+....+
T Consensus       140 ----------------d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~  203 (356)
T PF01494_consen  140 ----------------DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLS  203 (356)
T ss_dssp             ----------------ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSH
T ss_pred             ----------------cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccc
Confidence                            233443333  3 343  699999 999999999999998775444322  2222222322222


Q ss_pred             --Cc-ceEEEecCCCceEEeecCC-CceEEEEEcCccc--hHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccc
Q 010225          277 --NY-CAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS  350 (514)
Q Consensus       277 --~~-~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (514)
                        .. ..+....+.+.++++|..+ +...+.+......  .........+.+.+.+.+.+.                   
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  264 (356)
T PF01494_consen  204 DPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFG-------------------  264 (356)
T ss_dssp             TTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------
T ss_pred             cccccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccc-------------------
Confidence              12 2444444556678999988 4444444443322  122222233455555544332                   


Q ss_pred             ccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHh
Q 010225          351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG  430 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~  430 (514)
                      +..            .    .........|++..+...+|..+||+|||||||.|+|+.|||+|+||+||..|+++|..+
T Consensus       265 ~~~------------~----~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~  328 (356)
T PF01494_consen  265 PDL------------L----ETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAA  328 (356)
T ss_dssp             TCH------------H----HHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc------------c----ccccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHH
Confidence            000            0    001223345777777788899999999999999999999999999999999999999998


Q ss_pred             hhcCCCcchHHHHHHHHHHhhHHHHHHHHH
Q 010225          431 IAVGADIGEASLLKKYEAERKPANIVMMAV  460 (514)
Q Consensus       431 ~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~  460 (514)
                      ++. .  ..+.+|+.|+++|+++++++++.
T Consensus       329 ~~g-~--~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  329 LKG-E--ASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             HTT-S--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcC-C--cHHHHHHHHHHHHHHHHHHHHhC
Confidence            763 2  34789999999999999998875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=5.4e-39  Score=325.24  Aligned_cols=357  Identities=17%  Similarity=0.159  Sum_probs=248.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .||+||||||+|+++|+.|++.    |++|+|||+.+.+          ...+.+..+.++++++|+++|+++.+.+...
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~----G~~v~viE~~~~~----------~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~   67 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRH----GYSVTMVERHPGL----------RPGGQAIDVRGPALDVLERMGLLAAAQEHKT   67 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC----------CCCceeeeeCchHHHHHHhcCCHHHHHhhcc
Confidence            3899999999999999999996    9999999999876          3345678889999999999999998876554


Q ss_pred             cCcceEEEEeCCCcceeeeccC-CC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          136 AYFDKMQVWDYTGLGYTKYNAR-DV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                       .+..+.+++.++......... ..  ......+.+.|.+|.+.|.+.+. .+ ++++++++|++++.            
T Consensus        68 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~-v~i~~~~~v~~i~~------------  132 (372)
T PRK05868         68 -RIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PS-VEYLFDDSISTLQD------------  132 (372)
T ss_pred             -CccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CC-cEEEeCCEEEEEEe------------
Confidence             667777776554322211110 01  11122467889999998876553 34 99999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccC--CCCCceEEEEEEEecCCCcceEEE-ecCCC
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTG--WSYSQNAIICTVEHNKENYCAWQR-FLPAG  288 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g  288 (514)
                              .++.++|++.||++++||+ |+|||.+|.+|+.+......  ..++.......++...+......+ +.++.
T Consensus       133 --------~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (372)
T PRK05868        133 --------DGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDST  204 (372)
T ss_pred             --------cCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCc
Confidence                    4467889999999999999 99999999999998443322  123333333333332222223332 35666


Q ss_pred             ceEEeecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          289 PIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       289 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      .+.++|..++ ..+.++........ ......+...+.+.+.|. .+|... .        ..+. +.            
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~w~~~-~--------l~~~-~~------------  261 (372)
T PRK05868        205 MAGVYSARNNTEARAALAFMDTELR-IDYRDTEAQFAELQRRMAEDGWVRA-Q--------LLHY-MR------------  261 (372)
T ss_pred             EEEEEecCCCCceEEEEEEecCCcc-cccCChHHHHHHHHHHHhhCCCchH-H--------HHhh-cc------------
Confidence            7788888764 43444433221111 011223455666666664 134321 0        1111 00            


Q ss_pred             CCceeeeccceeeee-cccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225          367 PPRVVKLASERMVFP-LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  445 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~  445 (514)
                           . . ....|+ +...++++|..|||+|+|||||+++|+.|||+|+||+||+.|+++|...   ..++  +.+|+.
T Consensus       262 -----~-~-~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~~--~~al~~  329 (372)
T PRK05868        262 -----S-A-PDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDDY--QLGFAN  329 (372)
T ss_pred             -----c-C-CceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCCH--HHHHHH
Confidence                 0 0 001133 3444567899999999999999999999999999999999999999763   2244  889999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 010225          446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFH  484 (514)
Q Consensus       446 Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~  484 (514)
                      |++.++++....+.........|...+.+..++|+..|.
T Consensus       330 ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~  368 (372)
T PRK05868        330 YHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT  368 (372)
T ss_pred             HHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence            999999999999999999999999888888888876654

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=339.44  Aligned_cols=343  Identities=22%  Similarity=0.293  Sum_probs=241.5

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      +.+..+||+||||||+||++|+.|++.    |++|+||||.+..          ...+++..++++++++|+++|+++++
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~----G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l   68 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRR----GVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEV   68 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHH
Confidence            456679999999999999999999996    9999999998765          45677899999999999999999999


Q ss_pred             HhhhccC--cceEEEE-eCCCcceeeeccCCC--------------CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCC
Q 010225          131 QQHRHAY--FDKMQVW-DYTGLGYTKYNARDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS  193 (514)
Q Consensus       131 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~  193 (514)
                      .+.+...  .....++ ...+.....+.....              ......+.+++..+...|.+.+++.++++|++++
T Consensus        69 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~  148 (545)
T PRK06126         69 RSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGH  148 (545)
T ss_pred             HhhcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEecc
Confidence            8865421  0111111 111211111111000              1122346789999999999999877669999999


Q ss_pred             eeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEE
Q 010225          194 RLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAI  267 (514)
Q Consensus       194 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~  267 (514)
                      +|++++.                    +++.+++.+   .+|+  ++.+|+ |+|||.+|.||+.+++...+..+....+
T Consensus       149 ~v~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~  208 (545)
T PRK06126        149 RLTDFEQ--------------------DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDL  208 (545)
T ss_pred             EEEEEEE--------------------CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEE
Confidence            9999987                    334455554   3354  699999 9999999999999998887766554444


Q ss_pred             EEEEEecC-----CCcc--eEEEecCCCceEEeecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCC
Q 010225          268 ICTVEHNK-----ENYC--AWQRFLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPK  339 (514)
Q Consensus       268 ~~~~~~~~-----~~~~--~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (514)
                      ...+..+.     ....  .+..+.++.+..+++.+++. +.+. ......  .....+.+++.+.+.+.+.    ..  
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~----~~--  279 (545)
T PRK06126        209 SIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDEWLFH-QLRGGE--DEFTIDDVDARAFVRRGVG----ED--  279 (545)
T ss_pred             EEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCCeEEEE-EecCCC--CCCCCCHHHHHHHHHHhcC----CC--
Confidence            44444321     1112  23334466666777775543 2222 122221  1123456677777776442    10  


Q ss_pred             CCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHH
Q 010225          340 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD  419 (514)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~d  419 (514)
                                                ++..+...    ..|++....+++|..|||+|+|||||.++|+.|||+|+||+|
T Consensus       280 --------------------------~~~~i~~~----~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieD  329 (545)
T PRK06126        280 --------------------------IDYEVLSV----VPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGD  329 (545)
T ss_pred             --------------------------CCeEEEee----cccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHH
Confidence                                      11111111    235666677889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225          420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS  469 (514)
Q Consensus       420 a~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~  469 (514)
                      |.+|+++|...++.   .+.+.+|+.|+++|++++..++..+......+.
T Consensus       330 a~~La~~La~~~~~---~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~  376 (545)
T PRK06126        330 AVNLAWKLAAVLNG---WAGPALLDSYEAERRPIAARNTDYARRNADALG  376 (545)
T ss_pred             HHHHHHHHHHHHcC---CCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence            99999999987753   234789999999999999999999988877665

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-38  Score=323.98  Aligned_cols=340  Identities=19%  Similarity=0.233  Sum_probs=230.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+||||||+||++|+.|++.    |++|+||||.+.+          ...+.+..++++++++|+++|+++.+.....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~   66 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR----GIEVVVFEAAPEL----------RPLGVGINLLPHAVRELAELGLLDALDAIGI   66 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEEcCCcc----------cccCcceeeCchHHHHHHHCCCHHHHHhhCC
Confidence            4899999999999999999996    9999999999866          3456789999999999999999999877555


Q ss_pred             cCcceEEEEeCCCcceeeeccC-CCCCcccEEEEehHHHHHHHHHHHhc-CCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          136 AYFDKMQVWDYTGLGYTKYNAR-DVNKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       +...+.+++..+......... ......+.+.++|..|.+.|.+.+.+ .|..+|+++++|++++.             
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~-------------  132 (413)
T PRK07538         67 -RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ-------------  132 (413)
T ss_pred             -CCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe-------------
Confidence             556677776544322221111 11122335679999999999999865 46457999999999976             


Q ss_pred             ccccccccCCeeEEEeCCC-----cEEEeeE-EEecCCCchhhhhhCCCccCCCC-CceEEEEEEEecCCC-cceEEEec
Q 010225          214 SATTLFTKGHLAKLDLSDG-----TSLYAKL-VGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKEN-YCAWQRFL  285 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g-----~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~  285 (514)
                             ..+.+.+.+.++     .+++||+ |+|||.+|.+|+.++.......| +...+.+.++.+... ...+..+.
T Consensus       133 -------~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g  205 (413)
T PRK07538        133 -------DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAG  205 (413)
T ss_pred             -------cCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEc
Confidence                   223344554432     4799999 99999999999999755433333 344444444433221 11122232


Q ss_pred             -CCCceEEeecCCC-----ceEEEEEcCccch----HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccC
Q 010225          286 -PAGPIALLPIGDN-----FSNIVWTMNPKDA----SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD  355 (514)
Q Consensus       286 -~~g~~~~~p~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (514)
                       .++.++++|+.++     ...+.|.......    ......+.+...+.+.+.|. +|.....       +        
T Consensus       206 ~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~--------  269 (413)
T PRK07538        206 HLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------D--------  269 (413)
T ss_pred             CCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------c--------
Confidence             3567888998653     2344454432111    11111122233344444343 3322100       0        


Q ss_pred             ccccccccccCCCceeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcC
Q 010225          356 ATLSAKECFEVPPRVVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG  434 (514)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~  434 (514)
                                +++ +.........||+.... .++|..+||+|+|||||.|+|+.|||+|+||+||..|+++|...   +
T Consensus       270 ----------~~~-~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~  335 (413)
T PRK07538        270 ----------VPA-LIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---G  335 (413)
T ss_pred             ----------HHH-HHhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---C
Confidence                      000 11111223346766543 67899999999999999999999999999999999999999874   2


Q ss_pred             CCcchHHHHHHHHHHhhHHHHHHHHHHHH
Q 010225          435 ADIGEASLLKKYEAERKPANIVMMAVLDG  463 (514)
Q Consensus       435 ~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~  463 (514)
                       +  ...+|+.|+++|++++..++..++.
T Consensus       336 -~--~~~aL~~Ye~~R~~~~~~~~~~s~~  361 (413)
T PRK07538        336 -D--PEAALAAYEAERRPATAQIVLANRL  361 (413)
T ss_pred             -C--HHHHHHHHHHHhhHHHHHHHHHhhh
Confidence             3  3789999999999999999998877

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=2.3e-37  Score=315.52  Aligned_cols=375  Identities=15%  Similarity=0.087  Sum_probs=248.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+||||||+|+++|+.|++.    |++|+||||.+...        .....+...++++++++|+++|+++++...+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~   69 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREG   69 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC----CCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcC
Confidence            57999999999999999999996    99999999998531        0112345669999999999999999998765


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      . +...+.+++........+...  ..........+..+...|.+.+.+.+ +.++++++++.+..              
T Consensus        70 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~--------------  131 (390)
T TIGR02360        70 L-VHEGTEIAFDGQRFRIDLKAL--TGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD--------------  131 (390)
T ss_pred             c-eecceEEeeCCEEEEEecccc--CCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe--------------
Confidence            4 566666665443223333221  11122223467889999999988876 88999998887753              


Q ss_pred             cccccccCCeeEEEeC-CCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCc--eEEEEEEEecCCCcceEEEecCCC
Q 010225          215 ATTLFTKGHLAKLDLS-DGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAG  288 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g  288 (514)
                           .++..+.|.+. +|+  +++||+ |+|||.+|.||++++........+.  ..+.+.+....+......+..+++
T Consensus       132 -----~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  206 (390)
T TIGR02360       132 -----LAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHER  206 (390)
T ss_pred             -----cCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCC
Confidence                 02234556664 775  699999 9999999999999854332111111  122332321111111122334566


Q ss_pred             ceEEeecCC-CceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225          289 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  367 (514)
Q Consensus       289 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      .+.++|+.+ +...+.+..+...  .......+.+.+.+.+.+.    +.          ....                
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----~~----------~~~~----------------  254 (390)
T TIGR02360       207 GFALCSMRSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLP----SE----------AAER----------------  254 (390)
T ss_pred             ceEEEeccCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhcC----ch----------hhhh----------------
Confidence            677777754 3333445444322  1233445556666665432    10          0000                


Q ss_pred             Cceeeec-cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225          368 PRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  446 (514)
Q Consensus       368 ~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y  446 (514)
                        +.... .....+|+....+.+|..|||+|+|||||.++|+.|||+|+||+||..|+++|......  +  ...+|+.|
T Consensus       255 --~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~--~--~~~al~~Y  328 (390)
T TIGR02360       255 --LVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE--G--SSAGIEGY  328 (390)
T ss_pred             --hccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc--C--hHHHHHHH
Confidence              00000 01233566666678899999999999999999999999999999999999999876432  2  37899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225          447 EAERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQYISPLKRNIISYASG  502 (514)
Q Consensus       447 ~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~~~~~~~~~~~~~~~~~g  502 (514)
                      ++.|++++..++..++.+.++++.-..   ....++.+-|..+-..|.-+..+..+-.|
T Consensus       329 ~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (390)
T TIGR02360       329 SARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVG  387 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccC
Confidence            999999999999999999999876432   33344455555555566666666666555

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-38  Score=319.82  Aligned_cols=340  Identities=20%  Similarity=0.167  Sum_probs=231.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ++.++|+||||||+||++|+.|++.    |++|+||||.+...         ...+.++.++++++++|+++|+++.. .
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~   69 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRA----GWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-D   69 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-c
Confidence            4568999999999999999999996    99999999987431         23456788999999999999997654 3


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ... +.....+++.++........       ....+.+..+.+.|.+.+   ++++|+++++|++++.            
T Consensus        70 ~~~-~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~------------  126 (386)
T PRK07236         70 IGV-PSRERIYLDRDGRVVQRRPM-------PQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ------------  126 (386)
T ss_pred             ccc-CccceEEEeCCCCEeeccCC-------CccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe------------
Confidence            332 44455555544422111110       112346788888888765   4478999999999987            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec---CCC-----cceEEE
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN---KEN-----YCAWQR  283 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~  283 (514)
                              .++.++|.+.+|++++||+ |+|||.+|.+|+.+.........+...+.+.+...   ...     .....+
T Consensus       127 --------~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~  198 (386)
T PRK07236        127 --------DGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQ  198 (386)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEE
Confidence                    4466889999999999999 99999999999998433332223444555544321   111     112233


Q ss_pred             ecCCCceEEeecCC---------CceEEEEEcCccchHHh----h-------------CCCHHHHHHHHHHhhcCCCCCC
Q 010225          284 FLPAGPIALLPIGD---------NFSNIVWTMNPKDASDC----K-------------SMNEDDFVKILNHALDYGYGPH  337 (514)
Q Consensus       284 ~~~~g~~~~~p~~~---------~~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~  337 (514)
                      ..++++++.+|+++         ...+++|..+.......    .             ....+.+.+.+.+.+...|.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (386)
T PRK07236        199 LGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV  278 (386)
T ss_pred             EcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence            45667888888764         23567776654331100    0             0012344555555443223332


Q ss_pred             CCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhh
Q 010225          338 PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF  417 (514)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al  417 (514)
                      .           ..++                  +.......++++....+.|..+||+|+|||||+++|+.|||+|+||
T Consensus       279 ~-----------~~~~------------------~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai  329 (386)
T PRK07236        279 F-----------AELV------------------EATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAA  329 (386)
T ss_pred             H-----------HHHH------------------hhCcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHH
Confidence            1           1100                  1111112234444445778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225          418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD  471 (514)
Q Consensus       418 ~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~  471 (514)
                      +||..|+++|....   .++  ..+|+.|++.|++++..++..++.+..+++..
T Consensus       330 eDA~~La~~L~~~~---~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~  378 (386)
T PRK07236        330 ADAVALAEALAAAA---GDI--DAALAAWEAERLAVGAAIVARGRRLGARLQAQ  378 (386)
T ss_pred             HHHHHHHHHHHhcc---cch--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998742   233  78999999999999999999999998887654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=4.2e-38  Score=324.29  Aligned_cols=348  Identities=20%  Similarity=0.274  Sum_probs=236.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+|+||||||+||++|+.|+++    | ++|+||||.+..          ...+.+..++++++++|+++|+.+.+....
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~----g~~~v~v~Er~~~~----------~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~   66 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKH----SHLNVQLFEAAPAF----------GEVGAGVSFGANAVRAIVGLGLGEAYTQVA   66 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCCCEEEEecCCcC----------CCCccceeeCccHHHHHHHcCChhHHHHHh
Confidence            3699999999999999999997    6 699999999876          345678999999999999999988877644


Q ss_pred             cc---CcceEEE--EeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          135 HA---YFDKMQV--WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       135 ~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      ..   ......+  .+.........   ..........++|..|.+.|.+.+..   +.++++++|++++.         
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~---------  131 (414)
T TIGR03219        67 DSTPAPWQDIWFEWRNGSDASYLGA---TIAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEE---------  131 (414)
T ss_pred             cCCCccCcceeEEEEecCccceeee---eccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEe---------
Confidence            21   1122111  12211111111   00111112468999999999988742   56899999999986         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCC-----ccCCCCCceEEEEEEEecCC-------
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFK-----TTGWSYSQNAIICTVEHNKE-------  276 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~-----~~~~~~~~~~~~~~~~~~~~-------  276 (514)
                                 .++.++|.+.+|.+++||+ |+|||.+|.||+.+...     ......+..++.+.++....       
T Consensus       132 -----------~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~  200 (414)
T TIGR03219       132 -----------QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAA  200 (414)
T ss_pred             -----------cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccc
Confidence                       3456889999999999999 99999999999988421     22223356666666653210       


Q ss_pred             ---C---cceEEEecCCCceEEeecCCCce-EEEEEcCccchH-----HhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010225          277 ---N---YCAWQRFLPAGPIALLPIGDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSG  344 (514)
Q Consensus       277 ---~---~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (514)
                         .   .....++.++++++++|+.++.. ++++........     .......+...+.+.+.|. +|.+...     
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~-----  274 (414)
T TIGR03219       201 GLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDAAR-----  274 (414)
T ss_pred             cccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHHHH-----
Confidence               0   11223456778888999988764 334433221100     0011112223344444444 4543311     


Q ss_pred             ccccccccccCccccccccccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHH
Q 010225          345 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL  423 (514)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~L  423 (514)
                        +.++.                      ......|+++.. ..++|..+||+|+|||||+|.|+.|||+|+||+||..|
T Consensus       275 --~~~~~----------------------~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~L  330 (414)
T TIGR03219       275 --ALLEC----------------------IPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFL  330 (414)
T ss_pred             --HHHHh----------------------CCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHH
Confidence              11111                      011112333332 36789999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchH
Q 010225          424 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL  475 (514)
Q Consensus       424 a~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  475 (514)
                      +++|.....++.++  +.+|+.|++.|++++..++..++.+..+++..++..
T Consensus       331 a~~L~~~~~~~~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~  380 (414)
T TIGR03219       331 ARLLGDTELEAGDL--PALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV  380 (414)
T ss_pred             HHHHHhhccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence            99998764433344  889999999999999999999999999998876543

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=1.1e-35  Score=312.92  Aligned_cols=368  Identities=17%  Similarity=0.182  Sum_probs=238.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC--cHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~  130 (514)
                      .+.++|+||||||+||++|+.|++.    |++|+||||++...      +......+++.|+++++++|+++|+  .+++
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~----Gi~V~V~Er~~~~~------r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l  148 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKK----GFDVLVFEKDLSAI------RGEGKYRGPIQIQSNALAALEAIDIDVAEQV  148 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecccccc------ccccccCcccccCHHHHHHHHHcCcchHHHH
Confidence            5668999999999999999999996    99999999986320      0001112468899999999999985  3455


Q ss_pred             HhhhccCcceEE-EEeC-CCcceeeeccCC---CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCC
Q 010225          131 QQHRHAYFDKMQ-VWDY-TGLGYTKYNARD---VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS  205 (514)
Q Consensus       131 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~  205 (514)
                      .+.+......+. +.+. .+.....++...   ....+..+.++|..|.+.|.+.+..   ..++++++|++++.     
T Consensus       149 ~~~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~-----  220 (668)
T PLN02927        149 MEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFED-----  220 (668)
T ss_pred             HhhcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEE-----
Confidence            554432212221 2222 221122222110   0112346789999999999887632   34789999999986     


Q ss_pred             CcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC--cceEE
Q 010225          206 SISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAWQ  282 (514)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  282 (514)
                                     .++.++|.+.+|+++.+|+ |+|||++|.+|+.+.........++.++.+.++.....  ...+.
T Consensus       221 ---------------~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~  285 (668)
T PLN02927        221 ---------------SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYR  285 (668)
T ss_pred             ---------------eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceE
Confidence                           4567889999999999999 99999999999998443333333556666665542221  11122


Q ss_pred             E-ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225          283 R-FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK  361 (514)
Q Consensus       283 ~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (514)
                      . .....++..+|.+++...++++......   .....+...+.+.+.|. +|.+...       +.+..    +     
T Consensus       286 ~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~-~w~~~v~-------elI~~----t-----  345 (668)
T PLN02927        286 VFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFD-GWCDNVL-------DLLHA----T-----  345 (668)
T ss_pred             EEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhc-cCCHHHH-------HHHHh----C-----
Confidence            2 3455566666766665544333222111   11123456666666665 5644311       11111    0     


Q ss_pred             ccccCCCceeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc----CCC
Q 010225          362 ECFEVPPRVVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GAD  436 (514)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~----~~~  436 (514)
                           +.      .....++++... ..+|..+||+|+|||||+|+|+.|||+|+||+||..|+++|..+++.    +.+
T Consensus       346 -----~~------~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~  414 (668)
T PLN02927        346 -----EE------DAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTP  414 (668)
T ss_pred             -----cc------ccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCc
Confidence                 00      001123444332 35788999999999999999999999999999999999999987532    122


Q ss_pred             cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------CCCchHHHHHHHHHH
Q 010225          437 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYS-------VDFGPLNILRAAAFH  484 (514)
Q Consensus       437 ~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~~~l~  484 (514)
                      ...+.+|+.|+++|++++..++..++....++.       ...++..+++.+.+.
T Consensus       415 ~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~  469 (668)
T PLN02927        415 VDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVP  469 (668)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCC
Confidence            334789999999999999999998655555443       234566666665543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=6.6e-33  Score=285.38  Aligned_cols=336  Identities=18%  Similarity=0.182  Sum_probs=222.7

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      +..+++||+||||||+|+++|+.|++.    |++|+|+||....           ....+..++   ...++++|+++.+
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~----G~~VlllEr~~~~-----------~k~cgg~i~---~~~l~~lgl~~~~   96 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKG----GIETFLIERKLDN-----------AKPCGGAIP---LCMVGEFDLPLDI   96 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC-----------CCCcccccc---HhHHhhhcCcHHH
Confidence            455679999999999999999999996    9999999998632           223355554   3567788888776


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ...   .+..+.++...+ ..+.+... .....+..+++|..|+++|.+++.+.| ++++.+ ++++++.         +
T Consensus        97 ~~~---~i~~~~~~~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~  160 (450)
T PLN00093         97 IDR---KVTKMKMISPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------P  160 (450)
T ss_pred             HHH---HhhhheEecCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------c
Confidence            653   334455554332 22333211 112223346999999999999999887 999876 5877764         0


Q ss_pred             CCCccccccccCCeeEEEeCC-------C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-----
Q 010225          211 STPSATTLFTKGHLAKLDLSD-------G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----  275 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~-------g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----  275 (514)
                      .+        .++.+.|++.+       |  .+++||+ |+|||.+|.+|+.++...  ..+ ...+...++...     
T Consensus       161 ~~--------~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~--~~~-~~~~~~~~~~~~~~~~~  229 (450)
T PLN00093        161 KD--------PNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD--YDY-AIAFQERIKIPDDKMEY  229 (450)
T ss_pred             cC--------CCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC--cce-eEEEEEEEeCChhhccc
Confidence            00        12344555422       3  4799999 999999999999997642  111 122222222221     


Q ss_pred             CCcceEEEe----cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccc
Q 010225          276 ENYCAWQRF----LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW  351 (514)
Q Consensus       276 ~~~~~~~~~----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (514)
                      .......++    .|++|.|+||.++ ..++.......      ..+...+.+.+.+.+.    .              .
T Consensus       230 ~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~--------------~  284 (450)
T PLN00093        230 YEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN------KPAIKKYQRATRNRAK----D--------------K  284 (450)
T ss_pred             cCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC------CCChHHHHHHHHHHhh----h--------------h
Confidence            111222222    3678999999985 45565543211      1233444444443211    0              0


Q ss_pred             cccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhh
Q 010225          352 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI  431 (514)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~  431 (514)
                      +.+.             .+.    ....+|+.....+++..++++|+|||||.++|++|+|++.||.+|..+|+.+.+++
T Consensus       285 l~~~-------------~~~----~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~  347 (450)
T PLN00093        285 IAGG-------------KII----RVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS  347 (450)
T ss_pred             cCCC-------------eEE----EEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence            0000             011    12234555555667888999999999999999999999999999999999999988


Q ss_pred             hcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225          432 AVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG  473 (514)
Q Consensus       432 ~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~  473 (514)
                      +.+.+..+...|+.|++.++......+.....++++|..+++
T Consensus       348 ~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~  389 (450)
T PLN00093        348 ENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNP  389 (450)
T ss_pred             hcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            765333346789999999999999999999999999987433

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=2.6e-34  Score=276.87  Aligned_cols=350  Identities=19%  Similarity=0.195  Sum_probs=203.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+|+|||||++||++|+.|+|.    |++|+|+|+...+          ...++++++.-++.++|+.+|+-+.+.+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~----G~~v~VlE~~e~~----------R~~g~si~L~~ng~~aLkai~~~e~i~~~g   67 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK----GIDVVVLESREDP----------RGEGTSINLALNGWRALKAIGLKEQIREQG   67 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc----CCeEEEEeecccc----------ccCCcceeehhhHHHHHHHcccHHHHHHhc
Confidence            45899999999999999999996    9999999998877          344778889889999999999888888877


Q ss_pred             ccCcceE-EEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCC----eeEEEeeCCCCCCccc
Q 010225          135 HAYFDKM-QVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS----RLTSMALLPSSSSISV  209 (514)
Q Consensus       135 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~----~v~~v~~~~~~~~~~~  209 (514)
                      . +.... -....++.....+...+  ....-..+.|..+.+.++..+...++++++.+.    ....++.         
T Consensus        68 i-p~~~~v~~~~~sg~~~~~~~~~~--~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~---------  135 (420)
T KOG2614|consen   68 I-PLGGRVLIHGDSGKEVSRILYGE--PDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET---------  135 (420)
T ss_pred             C-cccceeeeecCCCCeeEecccCC--chHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee---------
Confidence            7 54433 33333444344433211  111123344555555555555545545444433    2222221         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEE--EEecCCC-cceE----
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICT--VEHNKEN-YCAW----  281 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~----  281 (514)
                                 .+....+++.||.++++|+ |||||++|.||+.++...+.+. ++.++++.  ++...+. ...+    
T Consensus       136 -----------~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~-~~~ayrg~~~~~~~~~~~~~vf~~~~  203 (420)
T KOG2614|consen  136 -----------LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYD-GSQAYRGLGFIPNGIPFGKKVFAIYG  203 (420)
T ss_pred             -----------cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcce-eEEEEeeeeeccCCCCcccceecccC
Confidence                       4456778889999999999 9999999999999987764333 34445443  3333332 1111    


Q ss_pred             ----EEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225          282 ----QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT  357 (514)
Q Consensus       282 ----~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                          .++.+.....+++.-+......|+.+-++.+.... ...+....+.+.+.                .+-.+++.+.
T Consensus       204 ~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~----------------d~i~~~~~e~  266 (420)
T KOG2614|consen  204 NGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFP----------------DIIELTGEES  266 (420)
T ss_pred             CeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhh-hHHHHHHHhHHhHH----------------HHHHhcChHH
Confidence                11222222222333333333333333333332222 11122222222111                1111122111


Q ss_pred             ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc----
Q 010225          358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----  433 (514)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~----  433 (514)
                      +..+..+           .+..||+-.   .+...++|+|+|||||+|.|+.|||+|+|++|+.+|+++|.++.+.    
T Consensus       267 i~~t~l~-----------~r~p~~~i~---~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~  332 (420)
T KOG2614|consen  267 IVRTPLA-----------DRPPWPLIS---VKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLA  332 (420)
T ss_pred             hhhchhh-----------hcCCcCeee---eccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhcc
Confidence            1111111           111122222   2233458999999999999999999999999999999999998762    


Q ss_pred             CCCcc--------hHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225          434 GADIG--------EASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG  473 (514)
Q Consensus       434 ~~~~~--------~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~  473 (514)
                      ++...        .+.++..|..+|..+.-.+..-+.....+-+...+
T Consensus       333 ~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~  380 (420)
T KOG2614|consen  333 GEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGP  380 (420)
T ss_pred             ccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccc
Confidence            11111        25688888888866655544444443433333333

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=3.9e-31  Score=269.91  Aligned_cols=320  Identities=21%  Similarity=0.236  Sum_probs=215.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      |||+||||||+|+++|+.|++.    |++|+|+|+.. ..          ....+..+++   ..++.+++.+++...  
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~----G~~V~l~E~~~-~~----------~~~cg~~i~~---~~l~~l~i~~~~~~~--   60 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA----GIETILLERAL-SN----------IKPCGGAIPP---CLIEEFDIPDSLIDR--   60 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCC-CC----------cCcCcCCcCH---hhhhhcCCchHHHhh--
Confidence            7999999999999999999996    99999999982 21          1223455665   457788887776653  


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       .+..+.++...+.. ......  ....+...++|..|+++|.+.+.+.| ++++.+ +|+++..               
T Consensus        61 -~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~---------------  119 (388)
T TIGR02023        61 -RVTQMRMISPSRVP-IKVTIP--SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER---------------  119 (388)
T ss_pred             -hcceeEEEcCCCce-eeeccC--CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE---------------
Confidence             45566666544321 111111  01112236999999999999999887 899766 6999876               


Q ss_pred             ccccccCCeeEEEeCC------C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-----CCcceE
Q 010225          216 TTLFTKGHLAKLDLSD------G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAW  281 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~------g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  281 (514)
                           .++.+.|.+.+      |  .+++||+ |+|||.+|.+|+.++..... .+ ..++...+....     +.....
T Consensus       120 -----~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~~  192 (388)
T TIGR02023       120 -----DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNL-PR-VIAYQERIKLPDDKMAYYEELAD  192 (388)
T ss_pred             -----cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCC-cE-EEEEEEEecCCchhcccCCCeEE
Confidence                 33456666543      2  3699999 99999999999999765321 11 122323332211     111121


Q ss_pred             EE----ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225          282 QR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT  357 (514)
Q Consensus       282 ~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                      .+    +.++++.|++|.++ ..++......      ...+.+.+.+.+.+.+.  ....                    
T Consensus       193 ~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~------~~~~~~~~~~~l~~~~~--~~~~--------------------  243 (388)
T TIGR02023       193 VYYGGEVSPDFYGWVFPKGD-HIAVGTGTGT------HGFDAKQLQANLRRRAG--LDGG--------------------  243 (388)
T ss_pred             EEECCCcCCCceEEEeeCCC-eeEEeEEECC------CCCCHHHHHHHHHHhhC--CCCc--------------------
Confidence            22    24678999999975 4555543221      11344556555555321  0000                    


Q ss_pred             ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc
Q 010225          358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI  437 (514)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~  437 (514)
                                + ...    ....++.....++|..++++|+|||||.++|++|+|++.||.+|..++++|.++++.+   
T Consensus       244 ----------~-~~~----~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~---  305 (388)
T TIGR02023       244 ----------Q-TIR----REAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG---  305 (388)
T ss_pred             ----------e-Eee----eeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC---
Confidence                      0 000    1112233344567788999999999999999999999999999999999999998754   


Q ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225          438 GEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD  471 (514)
Q Consensus       438 ~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~  471 (514)
                       ....|++|++.++......+...+.+..++...
T Consensus       306 -~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~  338 (388)
T TIGR02023       306 -DATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS  338 (388)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence             257899999999999988888888888888554

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=3.3e-30  Score=263.09  Aligned_cols=340  Identities=21%  Similarity=0.188  Sum_probs=220.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+||||||+|+++|+.|++.    |++|+|+||.....           ...+..++.   ..|+++|+.+.+...  
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~----G~~V~llE~~~~~~-----------~~cg~~i~~---~~l~~~g~~~~~~~~--   60 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA----GIQTFLLERKPDNA-----------KPCGGAIPL---CMVDEFALPRDIIDR--   60 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC----CCcEEEEecCCCCC-----------CCccccccH---hhHhhccCchhHHHh--
Confidence            5899999999999999999996    99999999976431           222444543   567888887766553  


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       .+..+.++...+ ..+.+.... ....+.+.++|..|+++|.+++.+.| ++++.++ +++++.         .++   
T Consensus        61 -~i~~~~~~~p~~-~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~~-~~~i~~---------~~~---  123 (398)
T TIGR02028        61 -RVTKMKMISPSN-IAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAG-ATLINGL-VTKLSL---------PAD---  123 (398)
T ss_pred             -hhceeEEecCCc-eEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcce-EEEEEe---------ccC---
Confidence             344555554332 222222111 11222346999999999999999987 9998884 777753         000   


Q ss_pred             ccccccCCeeEEEe--CC-----C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC-----Ccce
Q 010225          216 TTLFTKGHLAKLDL--SD-----G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCA  280 (514)
Q Consensus       216 ~~~~~~~~~~~v~~--~~-----g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  280 (514)
                           .++.+.|++  .+     |  .+++||+ |+|||.+|.+|+.++....  .+ ...+...+..+.+     ....
T Consensus       124 -----~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR02028       124 -----ADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SY-AIAFQERIRLPDEKMAYYDDLA  195 (398)
T ss_pred             -----CCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ce-EEEEEEEeeCChhhcccCCCeE
Confidence                 123344432  22     3  3799999 9999999999999976421  11 1122222222211     1112


Q ss_pred             EEE----ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCc
Q 010225          281 WQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA  356 (514)
Q Consensus       281 ~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (514)
                      ..+    +.|++|.|+||.++ ..++.......      ....+.+.+.+...+.    .              .+.+  
T Consensus       196 ~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~--------------~~~~--  248 (398)
T TIGR02028       196 EMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAA------KPEIKRLQSGIRARAA----G--------------KVAG--  248 (398)
T ss_pred             EEEeCCCCCCCceEEEEECCC-eEEEEEEeCCC------CccHHHHHHhhhhhhh----h--------------ccCC--
Confidence            222    24678999999985 44555532211      1123445544433111    0              0000  


Q ss_pred             cccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCC
Q 010225          357 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD  436 (514)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~  436 (514)
                                 ..+.+    ....++.....+++..++++|||||||.++|++|+|++.||.+|..+|+++.++++.+.+
T Consensus       249 -----------~~~~~----~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~  313 (398)
T TIGR02028       249 -----------GRIIR----VEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGA  313 (398)
T ss_pred             -----------CcEEE----EEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence                       00111    123344444456778899999999999999999999999999999999999999876643


Q ss_pred             cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          437 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       437 ~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                      ..++..|+.|++.++......+.....+.++|..++    ..++.++..+
T Consensus       314 ~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  359 (398)
T TIGR02028       314 VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSN----AGREAFVEMC  359 (398)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHh
Confidence            335788999999999999999999999999987642    3444444444

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11445 putative oxidoreductase; Provisional

Probab=99.98  E-value=3.8e-30  Score=258.87  Aligned_cols=306  Identities=19%  Similarity=0.170  Sum_probs=185.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+||||||+|+++|+.|++    . ++|+|+|+.+.....+      ....++..+++++.++|+++|++........
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~----~-~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~   70 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG----K-MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN   70 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc----c-CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeec
Confidence            799999999999999999999    4 8999999998652111      2345678999999999999998632111000


Q ss_pred             cCcceEEEEeCCCcceeeeccCC-CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      .....+.        .+.+.... .......+.++|..|+++|.+.+ +.+ ++++++++|++++.              
T Consensus        71 ~~~~~~~--------~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~--------------  126 (351)
T PRK11445         71 PQIFAVK--------TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR--------------  126 (351)
T ss_pred             cccceee--------EecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------
Confidence            0000010        11111000 00111235699999999999865 445 99999999999976              


Q ss_pred             cccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCc---ceEEEecCC
Q 010225          215 ATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPA  287 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  287 (514)
                            .++.+.|.+ .+|.  +++||+ |+|||.+|.+|++++.......+  .++...+....+.+   ..+..-..+
T Consensus       127 ------~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~  198 (351)
T PRK11445        127 ------EDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY--VAIQQWFAEKHPVPFYSCIFDNEITD  198 (351)
T ss_pred             ------cCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE--EEEEEEecCCCCCCCcceEEeccCCC
Confidence                  335566765 4664  699999 99999999999998754322222  22232333222211   112222246


Q ss_pred             CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225          288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  367 (514)
Q Consensus       288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      ++.|.+|.++.. .++...+.......    .+.+.+.+.. +...++..           +                  
T Consensus       199 ~~~W~~p~~~~~-~~g~~~~~~~~~~~----~~~l~~~l~~-~~~~~~~~-----------~------------------  243 (351)
T PRK11445        199 CYSWSISKDGYF-IFGGAYPMKDGRER----FETLKEKLSA-FGFQFGKP-----------V------------------  243 (351)
T ss_pred             ceEEEeCCCCcE-EecccccccchHHH----HHHHHHHHHh-cccccccc-----------c------------------
Confidence            788999985533 33222221111000    0111222211 11001000           0                  


Q ss_pred             Cceeeeccceeeeecccccccc--cccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225          368 PRVVKLASERMVFPLSLKHANN--YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  445 (514)
Q Consensus       368 ~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~  445 (514)
                          +.   ...+++.......  +.++||+|||||||.++|++|+|++.|++||..|++.|.+..        +..++.
T Consensus       244 ----~~---~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~  308 (351)
T PRK11445        244 ----KT---EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTA  308 (351)
T ss_pred             ----cc---ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHH
Confidence                00   0112221111222  235889999999999999999999999999999999998753        457889


Q ss_pred             HHHHhhHHH
Q 010225          446 YEAERKPAN  454 (514)
Q Consensus       446 Y~~~r~~~~  454 (514)
                      |++.++...
T Consensus       309 y~~~~~~~~  317 (351)
T PRK11445        309 YWRKTRKLR  317 (351)
T ss_pred             HHHHHHHHH
Confidence            999887755

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.97  E-value=8.7e-30  Score=250.52  Aligned_cols=285  Identities=19%  Similarity=0.269  Sum_probs=188.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      |||+||||||+|+++|+.|++.    |++|+||||+..++          ...++..+.+.+.+.+...+.  ..    .
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~----g~~v~vie~~~~~~----------~~~~~~~~~~~~~~~l~~~~~--~~----~   60 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK----GLRVLLLEKKSFPR----------YKPCGGALSPRVLEELDLPLE--LI----V   60 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCCC----------cccccCccCHhHHHHhcCCch--hh----h
Confidence            6999999999999999999996    99999999998763          233467788887777665542  11    1


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                      .......++...+.. .....    .....+.++|..+.+.|.+.+++.+ ++++++++|+++..               
T Consensus        61 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~---------------  119 (295)
T TIGR02032        61 NLVRGARFFSPNGDS-VEIPI----ETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI---------------  119 (295)
T ss_pred             hheeeEEEEcCCCcE-EEecc----CCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE---------------
Confidence            122333344333321 12111    1345678999999999999999887 99999999999976               


Q ss_pred             ccccccCCeeEEEeCC-CcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC--CcceEEEe-----cC
Q 010225          216 TTLFTKGHLAKLDLSD-GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--NYCAWQRF-----LP  286 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~-g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~  286 (514)
                           .++.+.+.+.+ +.+++||+ |+|||.+|.+|+.++......... ..+...++.+..  ....+..+     .+
T Consensus       120 -----~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (295)
T TIGR02032       120 -----HDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISP  193 (295)
T ss_pred             -----eCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCC
Confidence                 33455555554 35799999 999999999999987654322222 334444444321  12222222     14


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      ++++|++|.+++..++.+......    ...+.++..+.+...++ .+               +.               
T Consensus       194 ~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~-~l---------------~~---------------  238 (295)
T TIGR02032       194 GGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARRP-EL---------------KD---------------  238 (295)
T ss_pred             CceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCc-cc---------------cc---------------
Confidence            589999999998888877665432    22334444444443222 00               00               


Q ss_pred             CCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII  427 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l  427 (514)
                       .++.+    ...+++... ...++..+||+++|||||+++|++|||+|+||+||..+|++|
T Consensus       239 -~~~~~----~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       239 -AETVE----VIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             -CcEEe----eeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence             00011    111222222 355678899999999999999999999999999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.97  E-value=3e-30  Score=243.79  Aligned_cols=397  Identities=16%  Similarity=0.163  Sum_probs=289.2

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH
Q 010225           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (514)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (514)
                      .+.+..+||+|||||++|.++|+.|+|.    |.+|+||||+-.-          +..--|..++|.+...|.++|+.|.
T Consensus        40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kd----GRrVhVIERDl~E----------PdRivGEllQPGG~~~L~~LGl~Dc  105 (509)
T KOG1298|consen   40 ARNDGAADVIIVGAGVAGSALAYALAKD----GRRVHVIERDLSE----------PDRIVGELLQPGGYLALSKLGLEDC  105 (509)
T ss_pred             hccCCcccEEEECCcchHHHHHHHHhhC----CcEEEEEeccccc----------chHHHHHhcCcchhHHHHHhCHHHH
Confidence            3445678999999999999999999996    9999999998754          3344578999999999999999988


Q ss_pred             HHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          130 VQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      +.....+...++.++.......++|+..+.+..+.|..++...|.+-|++.+...+||++..+ .|.++..+        
T Consensus       106 ve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee--------  176 (509)
T KOG1298|consen  106 VEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE--------  176 (509)
T ss_pred             hhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc--------
Confidence            888777778888888877778888888888888889999999999999999999999998888 57777641        


Q ss_pred             CCCCccccccccCCeeEEEe--CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec-C-CCcceEE
Q 010225          210 DSTPSATTLFTKGHLAKLDL--SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-K-ENYCAWQ  282 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~--~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~  282 (514)
                                 ++....|++  +.|+  +..|-+ |.|||..|.+|+.+-.+.... ....++....+.. . .....+.
T Consensus       177 -----------~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghv  244 (509)
T KOG1298|consen  177 -----------EGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHV  244 (509)
T ss_pred             -----------cCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceE
Confidence                       222223444  3444  577889 999999999999994322211 1112222222221 1 1134555


Q ss_pred             EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225          283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  362 (514)
Q Consensus       283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      .+.+.-++.++|++....++.+..+..+...   ....+....+.+.....-.+.          .-+.|+.+..     
T Consensus       245 IL~~pspil~Y~ISStEvRcl~~v~g~~~Ps---i~~gem~~~mk~~v~PqiP~~----------lR~~F~~av~-----  306 (509)
T KOG1298|consen  245 ILSKPSPILVYQISSTEVRCLVDVPGQKLPS---IANGEMATYMKESVAPQIPEK----------LRESFLEAVD-----  306 (509)
T ss_pred             EecCCCcEEEEEecchheEEEEecCcccCCc---ccchhHHHHHHHhhCcCCCHH----------HHHHHHHHhh-----
Confidence            5668889999999999999998887755322   222333344443222000000          0011110000     


Q ss_pred             cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225          363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  442 (514)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~  442 (514)
                                 .......|-...++......+++|+|||..+-||.+|.||.-++.|...|-+.|.....-.+...-.+.
T Consensus       307 -----------~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~  375 (509)
T KOG1298|consen  307 -----------EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDY  375 (509)
T ss_pred             -----------ccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHH
Confidence                       001112333333444555678999999999999999999999999999999999874321111112578


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225          443 LKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  510 (514)
Q Consensus       443 l~~Y~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  510 (514)
                      ++.|...|++....+..++..++.+|.. ++.....+|+..|..+..-....+..+..++|..+.|+-+
T Consensus       376 i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~L  444 (509)
T KOG1298|consen  376 IKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSL  444 (509)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHH
Confidence            8999999999999999999999999988 7788889999999999988899999999999999998754

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.97  E-value=8.5e-29  Score=252.88  Aligned_cols=333  Identities=18%  Similarity=0.169  Sum_probs=217.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ++|||+||||||||+++|+.|++.    |++|+|+||+..++.+.|         .+..+.+..++.+......+ +   
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~----G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i---   64 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA----GLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-I---   64 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc----CCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-h---
Confidence            579999999999999999999997    899999999999865443         14667777665543222111 1   


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       ...+....++.......+..+      ...+|.++|..|+++|.+++++.| ++++.+++++++..             
T Consensus        65 -~~~v~~~~~~~~~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~-------------  123 (396)
T COG0644          65 -ERKVTGARIYFPGEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR-------------  123 (396)
T ss_pred             -heeeeeeEEEecCCceEEecC------CCceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE-------------
Confidence             123444444444222222211      155899999999999999999998 99999999999987             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEE-----EecCC
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ-----RFLPA  287 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  287 (514)
                            ++++.+.....++.+++|++ |+|||.+|.+++.++...........++.-....+.+......     ...+.
T Consensus       124 ------~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  197 (396)
T COG0644         124 ------EDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPG  197 (396)
T ss_pred             ------eCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCC
Confidence                  12234444444557899999 9999999999999988711111112233333333322211111     13467


Q ss_pred             CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225          288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  367 (514)
Q Consensus       288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (514)
                      |+.|+||.+++..++........ .. ..... +..+.+.+...                ...+..+.            
T Consensus       198 Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~~~-~~l~~f~~~~~----------------~~~~~~~~------------  246 (396)
T COG0644         198 GYGWIFPLGDGHANVGIGVLLDD-PS-LSPFL-ELLERFKEHPA----------------IRKLLLGG------------  246 (396)
T ss_pred             ceEEEEECCCceEEEEEEEecCC-cC-CCchH-HHHHHHHhCcc----------------cchhccCC------------
Confidence            99999999999999988766554 11 11111 33333322110                00010000            


Q ss_pred             CceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 010225          368 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  447 (514)
Q Consensus       368 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~  447 (514)
                       ++.+..  ....|........+..+++++|||||..++|++|.|+..||.+|..+|+.|.++...+     ...|+.|+
T Consensus       247 -~~~~~~--~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~  318 (396)
T COG0644         247 -KILEYA--AGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYE  318 (396)
T ss_pred             -ceEEEe--eeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHH
Confidence             011111  1123333333332677899999999999999999999999999999999999987643     56888899


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhc
Q 010225          448 AERKPANIVMMAVLDGFQKAYS  469 (514)
Q Consensus       448 ~~r~~~~~~~~~~~~~~~~~~~  469 (514)
                      +.++..............+.+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~  340 (396)
T COG0644         319 RLLRKSLAREDLKSLRLLKLLL  340 (396)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHH
Confidence            9988777666665555555544

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.97  E-value=3.6e-29  Score=274.10  Aligned_cols=328  Identities=17%  Similarity=0.162  Sum_probs=211.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcC--CcHHHHhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQH  133 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg--l~~~~~~~  133 (514)
                      ++|+||||||+||++|+.|++.+  .|++|+|+||++..          ...+.+..+++++++.|+.++  +.+.+...
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~--~G~~V~vlEr~~~~----------~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~   68 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLD--PAHEVTVVERNRPY----------DTFGWGVVFSDATLGNLRAADPVSAAAIGDA   68 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhC--CCCeEEEEecCCCC----------cccCcceEccHHHHHHHHhcCHHHHHHHHHh
Confidence            37999999999999999999952  27999999999865          344568899999999988776  22222221


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       ......+.+... +. ... .     .......++|.+|.+.|.+.+.+.| ++|+++++|+++..             
T Consensus        69 -~~~~~~~~~~~~-g~-~~~-~-----~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~-------------  125 (765)
T PRK08255         69 -FNHWDDIDVHFK-GR-RIR-S-----GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA-------------  125 (765)
T ss_pred             -cccCCceEEEEC-CE-EEE-E-----CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh-------------
Confidence             112333333322 11 110 0     1111245899999999999999987 99999998877632             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCC---CCCceEEEEEEEecCCCcceEEEecCCCc
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGW---SYSQNAIICTVEHNKENYCAWQRFLPAGP  289 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  289 (514)
                               .          ..+||+ |+|||.+|.+|+++.......   .+....+.+.... .+.........+.++
T Consensus       126 ---------~----------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~  185 (765)
T PRK08255        126 ---------L----------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGW  185 (765)
T ss_pred             ---------h----------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCce
Confidence                     0          147999 999999999999874322211   1111111111110 011011111123343


Q ss_pred             e--EEeecCCCceEEEEEcCccchHH--hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225          290 I--ALLPIGDNFSNIVWTMNPKDASD--CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  365 (514)
Q Consensus       290 ~--~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      +  ..+|..++...+++..+.+....  ....+.+...+.+.+.|. +|.+...        .+..              
T Consensus       186 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~~--------------  242 (765)
T PRK08255        186 FQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMSN--------------  242 (765)
T ss_pred             EEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH-HhcCCCc--------cccc--------------
Confidence            2  34777776665555554332211  223466778888888776 4433211        0000              


Q ss_pred             CCCceeeeccceeeeecccccccccccCc----EEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225          366 VPPRVVKLASERMVFPLSLKHANNYVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  441 (514)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~  441 (514)
                          .... .....+++....+++|..++    |+|+|||||+++|+.|||+|+||+||..|+++|....   .+  ...
T Consensus       243 ----~~~~-~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~~--~~~  312 (765)
T PRK08255        243 ----ASHL-RGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---GD--LPA  312 (765)
T ss_pred             ----cccc-ccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---cc--HHH
Confidence                0000 00001122223467899888    9999999999999999999999999999999998752   13  378


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225          442 LLKKYEAERKPANIVMMAVLDGFQKAYSVD  471 (514)
Q Consensus       442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~  471 (514)
                      +|+.|++.|+++++.++..++....+|...
T Consensus       313 al~~ye~~R~~r~~~~~~~s~~~~~~~~~~  342 (765)
T PRK08255        313 ALAAYEEERRVEVLRIQNAARNSTEWFENV  342 (765)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence            999999999999999999999988888664

>PRK10015 oxidoreductase; Provisional

Probab=99.97  E-value=5.8e-28  Score=248.40  Aligned_cols=375  Identities=15%  Similarity=0.143  Sum_probs=216.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH-HHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-VQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~-~~~  132 (514)
                      .+|||+||||||+|+++|+.|++.    |++|+||||.+.++.+.+         .+..+...+.+.+.. ++... ..+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~----G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~~-~~~~~~~i~   69 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA----GLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAIIP-GFAASAPVE   69 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCCCcccc---------cCceeecccHHHHcc-cccccCCcc
Confidence            469999999999999999999996    999999999987753321         123333333332210 22110 011


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCC-cccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ... ....+.+.+.+....+.+....... ...+|.+.|..|+++|.+.+++.| ++++++++|+++..           
T Consensus        70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~-----------  136 (429)
T PRK10015         70 RKV-TREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR-----------  136 (429)
T ss_pred             ccc-cceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE-----------
Confidence            101 1122334343333333333222111 224789999999999999999887 99999999999876           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCC-ceEEEEEEEecCC-----------Cc
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKE-----------NY  278 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------~~  278 (514)
                               +++.+.....++.++.||+ |+|||.+|.+++.++......... ...+...+..+..           ..
T Consensus       137 ---------~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g  207 (429)
T PRK10015        137 ---------EGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEG  207 (429)
T ss_pred             ---------eCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCC
Confidence                     2234432233455799999 999999999999987643322111 1222222332211           11


Q ss_pred             ceEEEec--CCC---ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccc
Q 010225          279 CAWQRFL--PAG---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  353 (514)
Q Consensus       279 ~~~~~~~--~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (514)
                      ..|..+.  ..+   ..|+++. .+..++.+.+...... ....++.++++.+.+.      |           .+..++
T Consensus       208 ~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~~-~~~~~~~~~l~~~~~~------p-----------~~~~~~  268 (429)
T PRK10015        208 AAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDIA-HAQKSVPQMLEDFKQH------P-----------AIRPLI  268 (429)
T ss_pred             eEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhhc-cCCCCHHHHHHHHhhC------h-----------HHHHHh
Confidence            2222221  111   3444443 3455555433221111 1234556666665431      0           111110


Q ss_pred             -cCccccccccccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccC--CcccccchhhhHHHHHHHHHHHH
Q 010225          354 -GDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAE  429 (514)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~--P~~GqG~~~al~da~~La~~l~~  429 (514)
                       +..             +.+.  .....|.... ..++...+++++|||||+.++  |++|+|++.||.++..+|+++.+
T Consensus       269 ~~~~-------------~~e~--~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~  333 (429)
T PRK10015        269 SGGK-------------LLEY--SAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA  333 (429)
T ss_pred             cCCE-------------EEEE--eeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHH
Confidence             000             0000  0111232211 235677899999999999998  56999999999999999999999


Q ss_pred             hhhcCCCcchHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcCCCchH---HHHHHHHHHH--hcc--ChhHHHHHHHHh
Q 010225          430 GIAVGADIGEASLLKKYEAERKPA-NIVMMAVLDGFQKAYSVDFGPL---NILRAAAFHG--AQY--ISPLKRNIISYA  500 (514)
Q Consensus       430 ~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~l~~--~~~--~~~~~~~~~~~~  500 (514)
                      +++.+ |. +...|+.|++.++.. ..+-+...+.+..++..+..+.   ..+.+.+-.+  ++.  .+.+.+.+++.+
T Consensus       334 a~~~~-d~-s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (429)
T PRK10015        334 AKERA-DF-SASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTIDGKPNQPVRKMIMGHA  410 (429)
T ss_pred             HHhcC-CC-ccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcccCCccchHHHHHHHHHH
Confidence            98865 33 467789999998877 4444667777777776652221   2222222222  222  246667777666

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.96  E-value=2.6e-26  Score=236.51  Aligned_cols=341  Identities=17%  Similarity=0.164  Sum_probs=202.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .+|||+||||||+|+++|+.|++.    |++|+||||.+.++.+.+         .+..+...+.+   .+  +.++...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~----G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e---~l--~~~~~~~   65 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLARE----GAQVLVIERGNSAGAKNV---------TGGRLYAHSLE---HI--IPGFADS   65 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhC----CCeEEEEEcCCCCCCccc---------ccceechhhHH---HH--hhhhhhc
Confidence            469999999999999999999996    999999999987753321         12233333322   21  1122111


Q ss_pred             ----hccCcceEEEEeCCCcceeeeccCC-CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          134 ----RHAYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       134 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                          .......+.+....+.....+.... ......+|.+.|..|+++|.+.+++.| ++++++++|++++.        
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~--------  136 (428)
T PRK10157         66 APVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ--------  136 (428)
T ss_pred             CcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------
Confidence                0001122333333332222322111 122334688999999999999999887 99999999999976        


Q ss_pred             cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEE--EEEecC----------
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIIC--TVEHNK----------  275 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~--~~~~~~----------  275 (514)
                                  +++.+.+...+|.++.||+ |+|||.+|.+++.++...... ....++..  .+..+.          
T Consensus       137 ------------~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~~  203 (428)
T PRK10157        137 ------------RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQLQ  203 (428)
T ss_pred             ------------eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhccC
Confidence                        2244433345677899999 999999999999987653222 22223322  222211          


Q ss_pred             -CCcceEEEec-C-C---CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccc
Q 010225          276 -ENYCAWQRFL-P-A---GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF  349 (514)
Q Consensus       276 -~~~~~~~~~~-~-~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (514)
                       +....+.... + .   |..|+++. .+..++.+.+..+... ....++.++++.+.+.      +.       ....+
T Consensus       204 ~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~~------p~-------v~~~~  268 (428)
T PRK10157        204 GNQGAACLFAGSPTDGLMGGGFLYTN-ENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQH------PA-------VAPLI  268 (428)
T ss_pred             CCCCeEEEEEECCCCCCcCceeEEEc-CCeEEEEEEEehHHhc-ccCCCHHHHHHHHHhC------ch-------HHHHh
Confidence             0112222221 1 1   13355543 4455565544332211 1224556666655431      00       00011


Q ss_pred             cccccCccccccccccCCCceeeecc-ceeeeeccc-ccccccccCcEEEEcccccccCC--cccccchhhhHHHHHHHH
Q 010225          350 SWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSR  425 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P--~~GqG~~~al~da~~La~  425 (514)
                      .+   .                +... .....|... ...++...++++++||||+.++|  ++|+|++.|+.++..+|+
T Consensus       269 ~~---~----------------~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAe  329 (428)
T PRK10157        269 AG---G----------------KLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAK  329 (428)
T ss_pred             CC---C----------------eEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHH
Confidence            11   0                0000 000122111 12345667899999999999998  699999999999999999


Q ss_pred             HHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010225          426 IIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV  470 (514)
Q Consensus       426 ~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~  470 (514)
                      ++.++++.+ +. +...|+.|++..+...-+-+...+.+..++..
T Consensus       330 ai~~a~~~~-~~-s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~  372 (428)
T PRK10157        330 TVLSAMKSD-DF-SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN  372 (428)
T ss_pred             HHHHHHhcC-Cc-chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence            999998865 33 46789999998777654555555555555554

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.95  E-value=7.7e-25  Score=223.99  Aligned_cols=302  Identities=19%  Similarity=0.207  Sum_probs=186.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (514)
                      ||+||||||+|+++|+.|++.    |++|+|||+.+...           .+....++...   ++++++. .+...   
T Consensus         1 DviIiGaG~AGl~~A~~la~~----g~~v~liE~~~~~~-----------~~~~~~~~~~~---~~~~~~~-~~~~~---   58 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP----GLRVQLIEPHPPIP-----------GNHTYGVWDDD---LSDLGLA-DCVEH---   58 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCCC-----------CCccccccHhh---hhhhchh-hHHhh---
Confidence            799999999999999999996    99999999987542           11123333332   3344432 22221   


Q ss_pred             Ccce-EEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          137 YFDK-MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       137 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                      .... ..+......  .       ........+++..|.+.|.+.+.+.+ ++++ ..+|++++.               
T Consensus        59 ~~~~~~~~~~~~~~--~-------~~~~~~~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~---------------  112 (388)
T TIGR01790        59 VWPDVYEYRFPKQP--R-------KLGTAYGSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA---------------  112 (388)
T ss_pred             cCCCceEEecCCcc--h-------hcCCceeEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe---------------
Confidence            1222 111111110  0       01122346999999999999998886 8886 558888875               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC----CcceEEEec--C--
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----NYCAWQRFL--P--  286 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~--  286 (514)
                          +.++.+.|.+.+|.+++|++ |+|||.+|.+++.......+.   +......+....+    ....+..+.  .  
T Consensus       113 ----~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~---q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~  185 (388)
T TIGR01790       113 ----DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGF---QVAYGVEARLSRPPHGPSSMVIMDARVDQLA  185 (388)
T ss_pred             ----cCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceE---EEEEEEEEEEcCCCCCCCceEEEeccccccc
Confidence                12356778888888899999 999999997754331111111   1222223333211    111222221  1  


Q ss_pred             ------CC--ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCcc
Q 010225          287 ------AG--PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDAT  357 (514)
Q Consensus       287 ------~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (514)
                            .+  ++|++|.+++...+.......    ....+.+.+.+.+.+.+. .+|..                     
T Consensus       186 ~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~---------------------  240 (388)
T TIGR01790       186 APELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRLRQRILARLNAQGWQI---------------------  240 (388)
T ss_pred             cccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHHHHHHHHHHHHcCCee---------------------
Confidence                  12  789999988876554322111    122455666666665443 01100                     


Q ss_pred             ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc
Q 010225          358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI  437 (514)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~  437 (514)
                                ..+.  ..+...+|+.....  +..+|+++||||||.++|.+|+|++.|+.+|..||+.|.++++.+   
T Consensus       241 ----------~~i~--~~~~~~iP~~~~~~--~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~---  303 (388)
T TIGR01790       241 ----------KTIE--EEEWGALPVGLPGP--FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS---  303 (388)
T ss_pred             ----------eEEE--eeeeEEEecccCCC--ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC---
Confidence                      0011  11233467654332  367899999999999999999999999999999999999988644   


Q ss_pred             chHHHHHHHHHHhhHHHHH
Q 010225          438 GEASLLKKYEAERKPANIV  456 (514)
Q Consensus       438 ~~~~~l~~Y~~~r~~~~~~  456 (514)
                       .+.+++.|+..++++..+
T Consensus       304 -~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       304 -SELATAAWDGLWPTERRR  321 (388)
T ss_pred             -HHHHHHHHHHhchHHHHH
Confidence             378999998877776665

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.94  E-value=2.9e-25  Score=229.04  Aligned_cols=336  Identities=17%  Similarity=0.235  Sum_probs=209.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH--HHhhh
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHR  134 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~  134 (514)
                      ||+|||||+||.++|..|++... ..++|+|||+...+           ..+-|....|....+++.+|+.+.  +.+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~-~~~~v~lie~~~~~-----------~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~   68 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGP-DALSVTLIESPDIP-----------RIGVGESTLPSLRPFLRRLGIDEADFMRACD   68 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCT-CSSEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT
T ss_pred             CEEEECCCHHHHHHHHHHHHhCC-CCcEEEEEecCCCC-----------CCCccccchHHHHHHHHHcCCChHHHHHHhC
Confidence            79999999999999999999721 11899999999876           345578888999999999999877  55544


Q ss_pred             ccCcceEEEEe--CCCcc-eeeecc---------------------------------------------CC-CCCcccE
Q 010225          135 HAYFDKMQVWD--YTGLG-YTKYNA---------------------------------------------RD-VNKEILG  165 (514)
Q Consensus       135 ~~~~~~~~~~~--~~~~~-~~~~~~---------------------------------------------~~-~~~~~~~  165 (514)
                      ...-.+..+.+  ..+.. ..+|..                                             .. .....++
T Consensus        69 ~~~k~g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  148 (454)
T PF04820_consen   69 ATFKLGIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYA  148 (454)
T ss_dssp             -EEESEEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-E
T ss_pred             CeEeccEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCee
Confidence            32333444422  11110 011100                                             00 1224567


Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      |+++|..|+++|++.+.+.| |+++.+ +|+++...                  +++....|+.++|.+++||+ |+|+|
T Consensus       149 yhlDR~~fd~~L~~~A~~~G-v~~~~g-~V~~v~~~------------------~~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  149 YHLDRAKFDQFLRRHAEERG-VEVIEG-TVVDVELD------------------EDGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT--EEEET--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             EEEeHHHHHHHHHHHHhcCC-CEEEeC-EEEEEEEc------------------CCCCEEEEEECCCCEEEEeEEEECCC
Confidence            99999999999999999998 999988 58888761                  12244578999999999999 99999


Q ss_pred             CCchhhhh-hCCCccCCCC---CceEEEEEEEecC-CCcceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCH
Q 010225          245 GKSRVREL-AGFKTTGWSY---SQNAIICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE  319 (514)
Q Consensus       245 ~~S~vR~~-l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  319 (514)
                      ..|.+.++ ++........   ...++...++... ..........+.||+|.+|+.++..+ ++.......      ++
T Consensus       209 ~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~  281 (454)
T PF04820_consen  209 RRSLLARKALKVGFRDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SD  281 (454)
T ss_dssp             GG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HH
T ss_pred             ccchhhHhhhcCCCccccccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CH
Confidence            99998777 4333332221   2234444454443 22343455668999999999998776 444433322      33


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEc
Q 010225          320 DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG  399 (514)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvG  399 (514)
                      +.....+.+.+...-                .             ..|          ...++......++..+|+++||
T Consensus       282 ~~A~~~l~~~l~~~~----------------~-------------~~~----------~~i~~~~g~~~~~~~~n~vavG  322 (454)
T PF04820_consen  282 DEAEAELLAYLGGSP----------------E-------------AEP----------RHIRFRSGRRKQFWGKNCVAVG  322 (454)
T ss_dssp             HHHHHHHHHHHTCHC----------------T-------------TSC----------EEEE-S-EEESSSEETTEEE-C
T ss_pred             HHHHHHHHHhcchhh----------------h-------------cch----------hhhcccccchhhcccCCEEEEc
Confidence            344444444332000                0             000          1122333335667788999999


Q ss_pred             ccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC-CchHH
Q 010225          400 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD-FGPLN  476 (514)
Q Consensus       400 DAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~  476 (514)
                      |||+.++|+.++|+.+++..+..|++.|...     +. .+.+++.|++......+.+.......+.+-... +++.+
T Consensus       323 dAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----~~-~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~  394 (454)
T PF04820_consen  323 DAAGFIDPLESTGIHLALSAAEALAEALPDD-----DF-SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWR  394 (454)
T ss_dssp             CCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHH
T ss_pred             chhhccCccccccHHHHHHHHHHHHHhcccC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHH
Confidence            9999999999999999999777777777653     22 277999999999999999999888888764443 34433

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02697 lycopene epsilon cyclase

Probab=99.92  E-value=1e-22  Score=211.71  Aligned_cols=311  Identities=19%  Similarity=0.218  Sum_probs=195.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+....             ...++++.   ..++.+|+.+.+..
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~----Gl~V~LIe~~~p~-------------~~n~GvW~---~~l~~lgl~~~i~~  165 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPF-------------TNNYGVWE---DEFKDLGLEDCIEH  165 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC----CCcEEEecCcccC-------------CCccccch---hHHHhcCcHHHHHh
Confidence            3458999999999999999999996    9999999986422             11133443   34677787544332


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                          ......++..++. ....      ...+ ..++|..|.+.|.+.+.+.| +++ .+++|++++.            
T Consensus       166 ----~w~~~~v~~~~~~-~~~~------~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~------------  219 (529)
T PLN02697        166 ----VWRDTIVYLDDDK-PIMI------GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE------------  219 (529)
T ss_pred             ----hcCCcEEEecCCc-eeec------cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE------------
Confidence                1222223222211 1111      1111 25899999999999998877 887 6779999876            


Q ss_pred             CccccccccCCeeE-EEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCC-CCceEEEEEEEecCC-C---cceEEEec
Q 010225          213 PSATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWS-YSQNAIICTVEHNKE-N---YCAWQRFL  285 (514)
Q Consensus       213 ~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~-~~~~~~~~~~~~~~~-~---~~~~~~~~  285 (514)
                              .++.+. +.+.+|.++.|++ |+|||.+|.  +.++....... ..+.++...+++..+ .   ...++.|.
T Consensus       220 --------~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r  289 (529)
T PLN02697        220 --------ASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYR  289 (529)
T ss_pred             --------cCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccc
Confidence                    223333 4567788899999 999999993  23322211121 233444444444421 1   12222111


Q ss_pred             -------------CCCceEEeecCCCceEEEEE-c-CccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccc
Q 010225          286 -------------PAGPIALLPIGDNFSNIVWT-M-NPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMF  349 (514)
Q Consensus       286 -------------~~g~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  349 (514)
                                   ..+++|++|.+++..++--+ . ...      ..+.+.+.+.+.+.+. .++.              
T Consensus       290 ~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~--------------  349 (529)
T PLN02697        290 DYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLLKKRLMSRLETMGIR--------------  349 (529)
T ss_pred             cccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCC--------------
Confidence                         12578999999988877322 2 211      1344566666655443 0110              


Q ss_pred             cccccCccccccccccCCCceeeec-cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHH
Q 010225          350 SWFRGDATLSAKECFEVPPRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA  428 (514)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~  428 (514)
                                          ..++. .+....|+.. +.+.. ..+++++||||+.++|.+|.|+..++.+|..+|++|.
T Consensus       350 --------------------~~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia  407 (529)
T PLN02697        350 --------------------ILKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA  407 (529)
T ss_pred             --------------------cceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHH
Confidence                                01111 2233366643 33333 5789999999999999999999999999999999999


Q ss_pred             HhhhcCCC-------cchHHHHHHHHHHhhHHHHHHHHHH
Q 010225          429 EGIAVGAD-------IGEASLLKKYEAERKPANIVMMAVL  461 (514)
Q Consensus       429 ~~~~~~~~-------~~~~~~l~~Y~~~r~~~~~~~~~~~  461 (514)
                      ++++.+.+       -.+...++.|++.|.....+.....
T Consensus       408 ~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~  447 (529)
T PLN02697        408 RILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF  447 (529)
T ss_pred             HHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence            99986631       1347889999998877665544433

>PLN02463 lycopene beta cyclase

Probab=99.91  E-value=8.2e-22  Score=202.18  Aligned_cols=309  Identities=20%  Similarity=0.176  Sum_probs=188.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      ....+||+||||||+|+++|+.|++.    |++|+|||+.+...           .+..++++   .+.++.+|+.+.+.
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~----Gl~V~liE~~~~~~-----------~p~~~g~w---~~~l~~lgl~~~l~   86 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEA----GLSVCCIDPSPLSI-----------WPNNYGVW---VDEFEALGLLDCLD   86 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHC----CCeEEEeccCccch-----------hccccchH---HHHHHHCCcHHHHH
Confidence            34568999999999999999999996    99999999976431           11122332   34577788866554


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ..    .....++..+... ..      ...+ ...++|..|.+.|.+++.+.| ++++ ..+|++++.           
T Consensus        87 ~~----w~~~~v~~~~~~~-~~------~~~~-y~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~-----------  141 (447)
T PLN02463         87 TT----WPGAVVYIDDGKK-KD------LDRP-YGRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH-----------  141 (447)
T ss_pred             hh----CCCcEEEEeCCCC-cc------ccCc-ceeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE-----------
Confidence            31    1111222111110 00      1112 235899999999999998876 8886 468999986           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC----cceEEEe--
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN----YCAWQRF--  284 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--  284 (514)
                               .++.+.|.+++|.++.||+ |+|||.+|++++.-.   ......+.++...++...+.    ...++.+  
T Consensus       142 ---------~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~  209 (447)
T PLN02463        142 ---------EESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRD  209 (447)
T ss_pred             ---------cCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCCCcccccchhhhcCh
Confidence                     3456788889998999999 999999999864311   11111122333333332111    1111110  


Q ss_pred             ---c-----------CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccc
Q 010225          285 ---L-----------PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS  350 (514)
Q Consensus       285 ---~-----------~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (514)
                         .           -.+++|++|.+++...+-.+.-..    ....+.+.+.+.+.+.+. .++-.             
T Consensus       210 ~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s----~~~~~~~~lk~~L~~~l~-~~Gi~-------------  271 (447)
T PLN02463        210 SHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVA----RPGLPMDDIQERMVARLR-HLGIK-------------  271 (447)
T ss_pred             hhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeec----CCCCCHHHHHHHHHHHHH-HCCCC-------------
Confidence               0           035789999999886554331000    011234555555555332 11100             


Q ss_pred             ccccCccccccccccCCCceeeecc-ceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225          351 WFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  429 (514)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~  429 (514)
                                         ..++.. +....|+... .+ ...++++++||||+.++|.+|.|+..++..|..+|++|.+
T Consensus       272 -------------------~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~  330 (447)
T PLN02463        272 -------------------VKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVE  330 (447)
T ss_pred             -------------------cceeeeeeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHH
Confidence                               011111 2223555332 22 2356899999999999999999999999999999999999


Q ss_pred             hhhcCCC--cc----hH---HHHHHHHHHhhHHH
Q 010225          430 GIAVGAD--IG----EA---SLLKKYEAERKPAN  454 (514)
Q Consensus       430 ~~~~~~~--~~----~~---~~l~~Y~~~r~~~~  454 (514)
                      +++.+..  ..    +.   +.|+.|++.|+...
T Consensus       331 ~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~  364 (447)
T PLN02463        331 YLGSSRSNSFRGDELSAEVWNDLWPIERRRQREF  364 (447)
T ss_pred             HHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHH
Confidence            9986543  11    12   45566666665443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.87  E-value=3.8e-20  Score=186.70  Aligned_cols=304  Identities=15%  Similarity=0.134  Sum_probs=171.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (514)
                      ||+|||||++|+++|+.|++.  ..|++|+|+|+.+....           .+...++.....-... ..++.+..   .
T Consensus         1 DviIvGaG~AGl~lA~~L~~~--~~g~~V~lle~~~~~~~-----------~~tw~~~~~~~~~~~~-~~~~~~v~---~   63 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRA--RPDFRIRVIEAGRTIGG-----------NHTWSFFDSDLSDAQH-AWLADLVQ---T   63 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhc--CCCCeEEEEeCCCCCCC-----------cccceecccccchhhh-hhhhhhhe---E
Confidence            899999999999999999983  13899999999874420           0111121111100000 00111111   1


Q ss_pred             CcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccc
Q 010225          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (514)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~  216 (514)
                      ......+......  ..       ....-..+++.+|.+.|.+.+..    .++++.+|++++.                
T Consensus        64 ~W~~~~v~~~~~~--~~-------l~~~Y~~I~r~~f~~~l~~~l~~----~i~~~~~V~~v~~----------------  114 (370)
T TIGR01789        64 DWPGYEVRFPKYR--RK-------LKTAYRSMTSTRFHEGLLQAFPE----GVILGRKAVGLDA----------------  114 (370)
T ss_pred             eCCCCEEECcchh--hh-------cCCCceEEEHHHHHHHHHHhhcc----cEEecCEEEEEeC----------------
Confidence            2223333322111  11       11223679999999999877742    3677889998843                


Q ss_pred             cccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEEEec---CC--
Q 010225          217 TLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFL---PA--  287 (514)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~--  287 (514)
                            +.+++  .+|.++.||+ |+|+|.+|.-....        .-+.++...++...++   ....+.+.   .+  
T Consensus       115 ------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~  178 (370)
T TIGR01789       115 ------DGVDL--APGTRINARSVIDCRGFKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGY  178 (370)
T ss_pred             ------CEEEE--CCCCEEEeeEEEECCCCCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCc
Confidence                  34444  6888999999 99999997521111        1133333334443333   12222222   22  


Q ss_pred             CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      .+++++|.+++...+-.+.-.+    ....+.+.+...+..... .+|...                             
T Consensus       179 ~F~Y~lP~~~~~~lvE~T~~s~----~~~l~~~~l~~~l~~~~~~~g~~~~-----------------------------  225 (370)
T TIGR01789       179 RFVYVLPLGSHDLLIEDTYYAD----DPLLDRNALSQRIDQYARANGWQNG-----------------------------  225 (370)
T ss_pred             eEEEECcCCCCeEEEEEEeccC----CCCCCHHHHHHHHHHHHHHhCCCce-----------------------------
Confidence            3566788888877664332221    122455666566555332 011100                             


Q ss_pred             CCceeeeccceeeeecccc-c-ccccc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHH
Q 010225          367 PPRVVKLASERMVFPLSLK-H-ANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  443 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~-~-~~~~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l  443 (514)
                        .+.+.  +...+|+... . ...|. .++|+++|||||.++|.+|||++.+++||..|++.+..   .+.+.  ..++
T Consensus       226 --~i~~~--e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~---~~~~~--~~~~  296 (370)
T TIGR01789       226 --TPVRH--EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL---SSEQL--AAFI  296 (370)
T ss_pred             --EEEEe--eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCc---Cccch--hhhh
Confidence              01111  2235776442 1 11122 46699999999999999999999999999999998851   11122  3467


Q ss_pred             HHHHHHhhHHHHHHHHHHHHH
Q 010225          444 KKYEAERKPANIVMMAVLDGF  464 (514)
Q Consensus       444 ~~Y~~~r~~~~~~~~~~~~~~  464 (514)
                      ..|...|..+.....-..+.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~l  317 (370)
T TIGR01789       297 DSRARRHWSKTGYYRLLNRML  317 (370)
T ss_pred             hHHHHHHHHHhHHHHHHHHHH
Confidence            888888777766444433333

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.86  E-value=5.8e-19  Score=178.87  Aligned_cols=275  Identities=23%  Similarity=0.273  Sum_probs=175.3

Q ss_pred             cEEEECCCHHHHHHHHHh--ccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           57 DVAVVGGGMVGMALACSL--ASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L--~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      |||||||||||+++|+.|  ++.    |++|+|||+++...         ....+....+...      ++.++.+... 
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~----g~~Vllid~~~~~~---------~~~~~tW~~~~~~------~~~~~~~v~~-   60 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP----GLSVLLIDPKPKPP---------WPNDRTWCFWEKD------LGPLDSLVSH-   60 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCcccc---------ccCCccccccccc------ccchHHHHhe-
Confidence            899999999999999999  664    99999999987551         0111122222111      1112233322 


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ......+..........        .....++++..|.+.|.+.+. .+ ..++.+.+|++|+.              
T Consensus        61 --~w~~~~v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~--------------  114 (374)
T PF05834_consen   61 --RWSGWRVYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE--------------  114 (374)
T ss_pred             --ecCceEEEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------
Confidence              23344444433321111        123357999999999999999 44 35678889999986              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC-C---cceEEEec----
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-N---YCAWQRFL----  285 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~----  285 (514)
                            .+..+.|.+.+|.+++|++ |+|+|..+......+        .++++...++.+.+ .   ...++.+.    
T Consensus       115 ------~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~  180 (374)
T PF05834_consen  115 ------TGDGVLVVLADGRTIRARVVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQS  180 (374)
T ss_pred             ------cCceEEEEECCCCEEEeeEEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCC
Confidence                  4456788889999999999 999997776222211        23445445555544 1   22222222    


Q ss_pred             --CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcC-CCCCCCCCCCCCccccccccccCccccccc
Q 010225          286 --PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKE  362 (514)
Q Consensus       286 --~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                        ...++|++|.+.++..+-.+.-...    ...+.+.+.+.+.+.+.. ++..                          
T Consensus       181 ~~~~~F~Y~lP~~~~~alvE~T~fs~~----~~~~~~~~~~~l~~~l~~~g~~~--------------------------  230 (374)
T PF05834_consen  181 ADGPSFLYVLPFSEDRALVEETSFSPR----PALPEEELKARLRRYLERLGIDD--------------------------  230 (374)
T ss_pred             CCCceEEEEEEcCCCeEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHcCCCc--------------------------
Confidence              3467899999999887754432221    113455666666665431 1110                          


Q ss_pred             cccCCCceeee-ccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225          363 CFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  429 (514)
Q Consensus       363 ~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~  429 (514)
                              .++ ..+....|+......+-...+++.+|+|++.++|.+|+++..++..|..+|+.|..
T Consensus       231 --------~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  231 --------YEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             --------eeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence                    112 22344578755444445566799999999999999999999999999999998886

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.81  E-value=5.9e-19  Score=164.85  Aligned_cols=243  Identities=21%  Similarity=0.216  Sum_probs=169.2

Q ss_pred             eeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEE-ecCCC-cceEEEecCCCceEEeecCCCceEEEEEcCccchHH
Q 010225          237 AKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD  313 (514)
Q Consensus       237 ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~  313 (514)
                      |.+ |.|||..|.+|+.+... . ......++...+. .+.+. ...+....+.+++.+|+++.+..++.+.++.+....
T Consensus         2 A~LtivaDG~~S~fRk~l~~~-~-~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~   79 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELSDN-K-PQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS   79 (276)
T ss_pred             CCEEEEecCCchHHHHhhcCC-C-CceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC
Confidence            789 99999999999999622 1 1222223332222 22222 455555678899999999999999999888663221


Q ss_pred             hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccC
Q 010225          314 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK  393 (514)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  393 (514)
                         .+..++.+.+.+.......+.       ..+.+..-+..                   ......|....+.......
T Consensus        80 ---~~~g~l~~yl~~~v~P~LP~~-------lr~~f~~al~~-------------------~rirsMPn~~lp~~~~~~~  130 (276)
T PF08491_consen   80 ---VSNGELKEYLREVVAPQLPEE-------LRPSFEKALED-------------------GRIRSMPNSFLPASPNWKP  130 (276)
T ss_pred             ---ccchHHHHHHHHHHHhhchHH-------HHHHHHHHhcc-------------------CCcceecccccCCCCCCCC
Confidence               223344444444222000000       00011110000                   0112244444444444557


Q ss_pred             cEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225          394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG  473 (514)
Q Consensus       394 ~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~  473 (514)
                      +++++|||+++.||++|+||+.|+.|+..|++.|.....-.++-.-.++++.|+.+|++....+..++..++.+|..+++
T Consensus       131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~  210 (276)
T PF08491_consen  131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD  210 (276)
T ss_pred             CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence            89999999999999999999999999999999999871111111126799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225          474 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  510 (514)
Q Consensus       474 ~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~  510 (514)
                      .++.+|+..|..+..-+......+..++|+.+.|.++
T Consensus       211 ~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L  247 (276)
T PF08491_consen  211 YLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVL  247 (276)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHH
Confidence            9999999999999988889999999999999998754

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.72  E-value=1.1e-15  Score=146.66  Aligned_cols=369  Identities=14%  Similarity=0.116  Sum_probs=211.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCC--CCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~--~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ...+||+|||||||||++|+.|.|...+  +.++|.|+||...++         .....|..|.|.+++.|  +--|.+.
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL--~P~wke~  142 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDEL--LPDWKED  142 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---------Cceecceeeccchhhhh--Ccchhhc
Confidence            4579999999999999999999874221  357999999999885         23334567777766543  1222222


Q ss_pred             HhhhccCc--ceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          131 QQHRHAYF--DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       131 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      ......++  +.+.|........++....  ......|.++-..|.+||-+++++.| ++|+-+..+.++..++..++++
T Consensus       143 ~apl~t~vT~d~~~fLt~~~~i~vPv~~p--m~NhGNYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkG  219 (621)
T KOG2415|consen  143 GAPLNTPVTSDKFKFLTGKGRISVPVPSP--MDNHGNYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKG  219 (621)
T ss_pred             CCcccccccccceeeeccCceeecCCCcc--cccCCcEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEee
Confidence            22112233  3344444433323322211  12233689999999999999999998 9999999999999988888888


Q ss_pred             cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh----CCC--ccCCCCC--ceEEEEEEEecCCCcc
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA----GFK--TTGWSYS--QNAIICTVEHNKENYC  279 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l----~~~--~~~~~~~--~~~~~~~~~~~~~~~~  279 (514)
                      +-..+-+   .++++...-.|+-|.+++|+. |.|.|++..+.+++    ..+  .+...|+  ..-++-.-+.......
T Consensus       220 iaT~D~G---I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~  296 (621)
T KOG2415|consen  220 IATNDVG---ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGE  296 (621)
T ss_pred             Eeecccc---ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcc
Confidence            7655543   234556667788888999999 99999999888776    222  1222221  1112211111111122


Q ss_pred             eEEEec----C--CCceEEeecCCCceEEEEEcCccchHHhhCCCH-HHHHHHHHHhhcCCCCCCCCCCCCCcccccccc
Q 010225          280 AWQRFL----P--AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWF  352 (514)
Q Consensus       280 ~~~~~~----~--~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (514)
                      +.+..+    .  -|...++-++++...+.+.+.-+-..  ..+++ .+|.+.=       .+|...          .-+
T Consensus       297 v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP~~EFQk~K-------~hP~i~----------~vl  357 (621)
T KOG2415|consen  297 VAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSPYKEFQKMK-------HHPSIS----------KVL  357 (621)
T ss_pred             eeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCC--CCCCHHHHHHHhh-------cCcchh----------hhh
Confidence            222111    1  14456677777776666554322110  01122 2222111       011100          000


Q ss_pred             ccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh
Q 010225          353 RGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  432 (514)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~  432 (514)
                      -|.      +++....+..+. ...+.       .+.....+=+|||=+|+.++=-.-.|.+.||.++..+|+.+-++++
T Consensus       358 eGg------k~i~YgARaLNE-GGfQs-------iPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~  423 (621)
T KOG2415|consen  358 EGG------KRIAYGARALNE-GGFQS-------IPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIK  423 (621)
T ss_pred             cCc------ceeeehhhhhcc-CCccc-------CcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHh
Confidence            010      000000000000 00000       1223334568999999999998999999999999999999999997


Q ss_pred             cCCCcchHH-HHHHHHHHhhHHH-HHHHHHHHHHHHhhcCC
Q 010225          433 VGADIGEAS-LLKKYEAERKPAN-IVMMAVLDGFQKAYSVD  471 (514)
Q Consensus       433 ~~~~~~~~~-~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~~~  471 (514)
                      ...+..... -+..|++.-+..+ .+-.-..+.+...|+..
T Consensus       424 ~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~  464 (621)
T KOG2415|consen  424 GLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGK  464 (621)
T ss_pred             cCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence            653210001 1457877555433 34444566666666644

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.50  E-value=3.9e-13  Score=128.00  Aligned_cols=145  Identities=19%  Similarity=0.220  Sum_probs=97.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .++||+||||||+||++|+.|++.    |++|+|+||+..++...|....   ......+.....++++++|+.      
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~----G~~V~vlEk~~~~Ggg~~~gg~---~~~~~~~~~~~~~~l~~~gi~------   86 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN----GLKVCVLERSLAFGGGSWGGGM---LFSKIVVEKPAHEILDEFGIR------   86 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCccccCCCc---ceecccccchHHHHHHHCCCC------
Confidence            468999999999999999999996    9999999999987543331100   000112233344455544431      


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                          +.     .               .....+..++..+.+.|.+++.+.| ++++++++|+++...+..         
T Consensus        87 ----~~-----~---------------~~~g~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~---------  132 (254)
T TIGR00292        87 ----YE-----D---------------EGDGYVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDT---------  132 (254)
T ss_pred             ----ee-----e---------------ccCceEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCC---------
Confidence                00     0               0011234578899999999999988 999999999999872110         


Q ss_pred             ccccccccCCeeEEEeC-----------CCcEEEeeE-EEecCCCchhhhhh
Q 010225          214 SATTLFTKGHLAKLDLS-----------DGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~-----------~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                              .....|...           +..++.|++ |+|+|..|.+.+.+
T Consensus       133 --------~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       133 --------VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             --------CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence                    012222221           234799999 99999999998877

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.49  E-value=4.2e-13  Score=128.18  Aligned_cols=145  Identities=21%  Similarity=0.211  Sum_probs=98.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|+|+...++..-|.  .. .......+......+|+++|+.      
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~----G~~V~liEk~~~~Ggg~~~--gg-~~~~~~~v~~~~~~~l~~~gv~------   90 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKA----GLKVAVFERKLSFGGGMWG--GG-MLFNKIVVQEEADEILDEFGIR------   90 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCCcccc--Cc-cccccccchHHHHHHHHHCCCC------
Confidence            468999999999999999999996    9999999999876432110  00 0000122334445555555541      


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                          +..     .               ....+.+++..+...|.+.+.+.| ++++++++|+++...+           
T Consensus        91 ----~~~-----~---------------~~g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~-----------  134 (257)
T PRK04176         91 ----YKE-----V---------------EDGLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILRE-----------  134 (257)
T ss_pred             ----cee-----e---------------cCcceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEeC-----------
Confidence                110     0               011256789999999999999987 9999999999997611           


Q ss_pred             ccccccccCCeeEEEeC-----------CCcEEEeeE-EEecCCCchhhhhhC
Q 010225          214 SATTLFTKGHLAKLDLS-----------DGTSLYAKL-VGADGGKSRVRELAG  254 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~-----------~g~~~~ad~-V~AdG~~S~vR~~l~  254 (514)
                             ++....+...           +..+++|++ |+|+|.+|.+.+.+.
T Consensus       135 -------~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~  180 (257)
T PRK04176        135 -------DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLA  180 (257)
T ss_pred             -------CCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence                   1111222211           234799999 999999999998873

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.49  E-value=2.5e-12  Score=131.29  Aligned_cols=72  Identities=14%  Similarity=0.093  Sum_probs=57.1

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+.+.|.+.+++.| ++++++++|++++.                    +++.+.|.+.++ ++.||. |.|+|
T Consensus       140 g~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG  197 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAG  197 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence            45788899999999998887 99999999999976                    345567777666 699999 99999


Q ss_pred             CC-chhhhhhCCCccC
Q 010225          245 GK-SRVRELAGFKTTG  259 (514)
Q Consensus       245 ~~-S~vR~~l~~~~~~  259 (514)
                      .+ +.+++.++...+.
T Consensus       198 ~~~~~l~~~~g~~~~~  213 (380)
T TIGR01377       198 AWTSKLLSPLGIEIPL  213 (380)
T ss_pred             cchHHHhhhcccCCCc
Confidence            87 5677777655443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.47  E-value=2.5e-13  Score=131.89  Aligned_cols=161  Identities=22%  Similarity=0.272  Sum_probs=101.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeC--hhhHHHHHHcCCcHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT--PATISFFKEIGAWQYVQ  131 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~~lgl~~~~~  131 (514)
                      +.+||+||||||||+++|..+++.    |.+|+|||+.+.++.+-..     ..+...+++  ....+++.+.+-...+.
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~----G~~V~lid~~~k~GrKil~-----sGgGrCN~Tn~~~~~~~ls~~p~~~~fl   72 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKA----GRRVLLIDKGPKLGRKILM-----SGGGRCNFTNSEAPDEFLSRNPGNGHFL   72 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhc----CCEEEEEecCccccceeEe-----cCCCCccccccccHHHHHHhCCCcchHH
Confidence            468999999999999999999996    9999999999988644210     000111111  11234444443222222


Q ss_pred             hhhccCcceEEE---EeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          132 QHRHAYFDKMQV---WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       132 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      ......+....+   +...+.   .+.... ..+.+-....-..+.++|+.++++.+ |+|+.+++|.+++.        
T Consensus        73 ~sal~~ft~~d~i~~~e~~Gi---~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~--------  139 (408)
T COG2081          73 KSALARFTPEDFIDWVEGLGI---ALKEED-LGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEK--------  139 (408)
T ss_pred             HHHHHhCCHHHHHHHHHhcCC---eeEEcc-CceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEe--------
Confidence            222212221111   111111   111000 01111111356889999999999998 99999999999987        


Q ss_pred             cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                                  .+....+.+.+|++++||. |.|+|..|.
T Consensus       140 ------------~~~~f~l~t~~g~~i~~d~lilAtGG~S~  168 (408)
T COG2081         140 ------------DDSGFRLDTSSGETVKCDSLILATGGKSW  168 (408)
T ss_pred             ------------cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence                        4467889999998999999 999997774

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.42  E-value=2e-12  Score=114.96  Aligned_cols=145  Identities=20%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..||+||||||+||++|+.|++.    |++|+||||+-.++...|.-....   -...+...+.++|+++|+        
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w~GGmlf---~~iVv~~~a~~iL~e~gI--------   94 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKA----GLKVAIFERKLSFGGGIWGGGMLF---NKIVVREEADEILDEFGI--------   94 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhC----CceEEEEEeecccCCccccccccc---ceeeecchHHHHHHHhCC--------
Confidence            56999999999999999999996    999999999998875555211111   124566778888888876        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ++..                    ....-|..+...+...|..++.+.| ++|+.++.|.++...+...+        
T Consensus        95 --~ye~--------------------~e~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~rV--------  143 (262)
T COG1635          95 --RYEE--------------------EEDGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDPRV--------  143 (262)
T ss_pred             --ccee--------------------cCCceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCCce--------
Confidence              2211                    1111256788899999999999998 99999999999987321111        


Q ss_pred             cccccccCCeeEEEe---------CCCcEEEeeE-EEecCCCchhhhhh
Q 010225          215 ATTLFTKGHLAKLDL---------SDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~---------~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                              .++.+..         -|--++++++ |+|+|....+-+.+
T Consensus       144 --------aGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         144 --------AGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             --------EEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence                    1122221         1334699999 99999998887666

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.40  E-value=4.1e-12  Score=128.12  Aligned_cols=69  Identities=26%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCCcEEEeeE-EEe
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-VGA  242 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~A  242 (514)
                      +..++...+.+.|.+.+++.| ++|+.+++|++++.                    +++.+. |++.+|. +.||. |.|
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE-
T ss_pred             cccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEec
Confidence            467899999999999999998 99999999999987                    556666 9999998 99999 999


Q ss_pred             cCCCchh-hhhhCC
Q 010225          243 DGGKSRV-RELAGF  255 (514)
Q Consensus       243 dG~~S~v-R~~l~~  255 (514)
                      +|.++.. .+.++.
T Consensus       199 ~G~~s~~l~~~~~~  212 (358)
T PF01266_consen  199 AGAWSPQLLPLLGL  212 (358)
T ss_dssp             -GGGHHHHHHTTTT
T ss_pred             ccccceeeeecccc
Confidence            9998865 344443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.38  E-value=3.3e-12  Score=114.46  Aligned_cols=146  Identities=21%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .++||+||||||+||++|+.|++.    |++|+|||++..++..-|.-...   -....+...+..+|+++|+       
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~----g~kV~v~E~~~~~GGg~~~Gg~l---f~~iVVq~~a~~iL~elgi-------   81 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA----GLKVAVIERKLSPGGGMWGGGML---FNKIVVQEEADEILDELGI-------   81 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH----TS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT--------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC----CCeEEEEecCCCCCccccccccc---cchhhhhhhHHHHHHhCCc-------
Confidence            468999999999999999999997    99999999999886554421111   1236677888899988876       


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         ++..                    .....|..+...+...|...+.+.| ++|+..+.|+++...+         +.
T Consensus        82 ---~y~~--------------------~~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r~---------~~  128 (230)
T PF01946_consen   82 ---PYEE--------------------YGDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVRE---------DD  128 (230)
T ss_dssp             -----EE---------------------SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEEC---------SC
T ss_pred             ---eeEE--------------------eCCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEEc---------CC
Confidence               1110                    0112356788999999999998876 9999999999998721         00


Q ss_pred             ccccccccCCeeEEEe----C-----CCcEEEeeE-EEecCCCchhhhhh
Q 010225          214 SATTLFTKGHLAKLDL----S-----DGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~----~-----~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                             .-.++.+..    .     |--+++|++ |+|+|..+.+-+.+
T Consensus       129 -------rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~  171 (230)
T PF01946_consen  129 -------RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL  171 (230)
T ss_dssp             -------EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred             -------eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence                   001222222    1     223799999 99999998765544

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.36  E-value=1.3e-10  Score=118.35  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=49.8

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+...+.+.+.+.| ++++++++|++++.                    .++.+.|...+| ++.||. |.|+|.
T Consensus       145 ~v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~  202 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGA  202 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCc
Confidence            4677888888888888877 99999999999986                    335677887777 699999 999999


Q ss_pred             Cch
Q 010225          246 KSR  248 (514)
Q Consensus       246 ~S~  248 (514)
                      ++.
T Consensus       203 ~~~  205 (376)
T PRK11259        203 WVK  205 (376)
T ss_pred             chh
Confidence            865

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.36  E-value=8.6e-11  Score=123.93  Aligned_cols=66  Identities=18%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC----cEEEeeE-EE
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKL-VG  241 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~ad~-V~  241 (514)
                      .++...+...|...+.+.| ++++.+++|+++..                    .++.+.|...++    .++.|++ |+
T Consensus       151 ~vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVn  209 (502)
T PRK13369        151 WVDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVN  209 (502)
T ss_pred             eecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEE
Confidence            4678889999999999988 99999999999986                    334566665554    2599999 99


Q ss_pred             ecCCCch-hhhhh
Q 010225          242 ADGGKSR-VRELA  253 (514)
Q Consensus       242 AdG~~S~-vR~~l  253 (514)
                      |+|.|+. +.+++
T Consensus       210 AaG~wa~~l~~~~  222 (502)
T PRK13369        210 AAGPWVTDVIHRV  222 (502)
T ss_pred             CCCccHHHHHhhc
Confidence            9999985 44433

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.34  E-value=5.9e-11  Score=121.60  Aligned_cols=69  Identities=13%  Similarity=0.233  Sum_probs=56.5

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+.+.|.+.+++.| ++++++++|++++.                    .++.+.|.+.+| ++.||. |.|+|
T Consensus       144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G  201 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG  201 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence            46788999999999999887 99999999999976                    334567777776 699999 99999


Q ss_pred             CCch-hhhhhCCC
Q 010225          245 GKSR-VRELAGFK  256 (514)
Q Consensus       245 ~~S~-vR~~l~~~  256 (514)
                      .+|. +.+.++.+
T Consensus       202 ~~s~~l~~~~g~~  214 (393)
T PRK11728        202 LMSDRLAKMAGLE  214 (393)
T ss_pred             cchHHHHHHhCCC
Confidence            9984 56666654

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.34  E-value=1.1e-10  Score=120.40  Aligned_cols=114  Identities=16%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+...|.+.+.+.| ++++.+++|++++..                  +++..+.|.+.+| ++.|+. |.|.|.
T Consensus       179 ~v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~------------------~~~~~~~v~t~~g-~i~a~~vVvaagg  238 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRG-VDIIQNCEVTGFIRR------------------DGGRVIGVETTRG-FIGAKKVGVAVAG  238 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc------------------CCCcEEEEEeCCc-eEECCEEEECCCh
Confidence            4566778888999999888 999999999999750                  0123345777777 589987 565555


Q ss_pred             C-chhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceEEeecCCCceEEE
Q 010225          246 K-SRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV  303 (514)
Q Consensus       246 ~-S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  303 (514)
                      + +.+++.++.+.....+....+.  .+ .............++.+++.|..++...+.
T Consensus       239 ~~~~l~~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig  294 (407)
T TIGR01373       239 HSSVVAAMAGFRLPIESHPLQALV--SE-PLKPIIDTVVMSNAVHFYVSQSDKGELVIG  294 (407)
T ss_pred             hhHHHHHHcCCCCCcCcccceEEE--ec-CCCCCcCCeEEeCCCceEEEEcCCceEEEe
Confidence            5 5777777665544443322221  11 111100011122456677888877654444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.32  E-value=1.1e-10  Score=122.93  Aligned_cols=61  Identities=20%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC---Cc--EEEeeE-E
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKL-V  240 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad~-V  240 (514)
                      .++...+...|.+.+.+.| ++++.+++|+++..                    .++.+.|...+   |+  ++.|+. |
T Consensus       151 ~vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VV  209 (508)
T PRK12266        151 WVDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALV  209 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEE
Confidence            3567888888888888887 99999999999976                    33455565543   43  699999 9


Q ss_pred             EecCCCch
Q 010225          241 GADGGKSR  248 (514)
Q Consensus       241 ~AdG~~S~  248 (514)
                      +|+|.|+.
T Consensus       210 nAaG~wa~  217 (508)
T PRK12266        210 NAAGPWVK  217 (508)
T ss_pred             ECCCccHH
Confidence            99999984

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.31  E-value=1.1e-11  Score=125.74  Aligned_cols=154  Identities=18%  Similarity=0.167  Sum_probs=80.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCceEEe-----ChhhHHHHHH
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRVSTV-----TPATISFFKE  123 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~-------~~~~~~~~~~~~~~~l-----~~~~~~~l~~  123 (514)
                      |||+||||||||+++|+.|++.    |.+|+|+||++.++.+       -|...........+.-     ..-....|+.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~----g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK----GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence            7999999999999999999996    9999999999988633       1221110111111110     1122344555


Q ss_pred             cCCcHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCC
Q 010225          124 IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (514)
Q Consensus       124 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~  203 (514)
                      ++.. ++...-. . .++.........  .|+          ..-...++.++|++.+++.+ |+|+++++|.+++.   
T Consensus        77 f~~~-d~~~ff~-~-~Gv~~~~~~~gr--~fP----------~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~---  137 (409)
T PF03486_consen   77 FSPE-DLIAFFE-E-LGVPTKIEEDGR--VFP----------KSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEK---  137 (409)
T ss_dssp             S-HH-HHHHHHH-H-TT--EEE-STTE--EEE----------TT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEE---
T ss_pred             CCHH-HHHHHHH-h-cCCeEEEcCCCE--ECC----------CCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeee---
Confidence            4421 1111110 0 011111111111  111          11246889999999999988 99999999999987   


Q ss_pred             CCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          204 SSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                                      ++++...|+++++.++.||. |.|+|..|.
T Consensus       138 ----------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  138 ----------------KEDGVFGVKTKNGGEYEADAVILATGGKSY  167 (409)
T ss_dssp             ----------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred             ----------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence                            12344888887778899999 999998774

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.29  E-value=4.1e-10  Score=116.13  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=50.1

Q ss_pred             EehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC-----cEEEeeE-EE
Q 010225          168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKL-VG  241 (514)
Q Consensus       168 i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~-V~  241 (514)
                      ++...+...|.+.+++.| ++++++++|++++.                    .++.+.+...++     .+++||. |.
T Consensus       194 ~~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~  252 (410)
T PRK12409        194 GDIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVV  252 (410)
T ss_pred             cCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEE
Confidence            455788889999999988 99999999999976                    334455544332     3699999 99


Q ss_pred             ecCCCch-hhhhhCC
Q 010225          242 ADGGKSR-VRELAGF  255 (514)
Q Consensus       242 AdG~~S~-vR~~l~~  255 (514)
                      |+|.+|. +.+.++.
T Consensus       253 a~G~~s~~l~~~~~~  267 (410)
T PRK12409        253 CAGVGSRALAAMLGD  267 (410)
T ss_pred             CCCcChHHHHHHhCC
Confidence            9999985 4444443

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.28  E-value=3.1e-10  Score=123.81  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+...|.+.+.+ | ++++++++|++++.                    .++.+.|.+.+|..+.||. |.|+|.
T Consensus       404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~  461 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH  461 (662)
T ss_pred             eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence            46888999999999988 6 99999999999976                    3456778888887788999 999999


Q ss_pred             Cch
Q 010225          246 KSR  248 (514)
Q Consensus       246 ~S~  248 (514)
                      +|.
T Consensus       462 ~s~  464 (662)
T PRK01747        462 DAA  464 (662)
T ss_pred             Ccc
Confidence            985

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.28  E-value=1.3e-10  Score=116.92  Aligned_cols=180  Identities=19%  Similarity=0.262  Sum_probs=105.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH-------------HH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI-------------SF  120 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~  120 (514)
                      +.+||+|||||+.|+++|+.|+++.  ..++|+|+||.+.++........+. ...|+...|.+.             ++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~--p~~~V~llEk~~~~a~~sS~~NSgv-iHag~~y~p~slka~l~~~g~~~~~~~   78 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYE--PDLSVALLEKEDGVAQESSSNNSGV-IHAGLYYTPGSLKAKLCVAGNINEFAI   78 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhC--CCceEEEEEccCccccccccCcccc-eeccccCCCcchhhHHHHHHHHHHHHH
Confidence            5789999999999999999999972  1399999999998864433211111 111122222211             11


Q ss_pred             HHHcCC-------------------cHHHHhhhc-cCcceEEEEeCCCcceeeeccC----CCCCcccEEEEehHHHHHH
Q 010225          121 FKEIGA-------------------WQYVQQHRH-AYFDKMQVWDYTGLGYTKYNAR----DVNKEILGCVVENKVLHSS  176 (514)
Q Consensus       121 l~~lgl-------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~  176 (514)
                      -+++++                   .+.+.+... ..+..+...+............    .....+.+..++...+...
T Consensus        79 ~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~  158 (429)
T COG0579          79 CKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA  158 (429)
T ss_pred             HHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence            112210                   000000000 0011111112111111100000    0001122356889999999


Q ss_pred             HHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCC-eeEEEeCCCcE-EEeeE-EEecCCCch-hhhh
Q 010225          177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGTS-LYAKL-VGADGGKSR-VREL  252 (514)
Q Consensus       177 L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~-~~ad~-V~AdG~~S~-vR~~  252 (514)
                      |.+.++++| +++++|++|+++++                    .++ ...+.+.+|++ ++|++ |.|.|..|- +-++
T Consensus       159 l~e~a~~~g-~~i~ln~eV~~i~~--------------------~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~  217 (429)
T COG0579         159 LAEEAQANG-VELRLNTEVTGIEK--------------------QSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQM  217 (429)
T ss_pred             HHHHHHHcC-CEEEecCeeeEEEE--------------------eCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHH
Confidence            999999997 99999999999988                    334 67778888876 99999 999998874 5566


Q ss_pred             hCCCc
Q 010225          253 AGFKT  257 (514)
Q Consensus       253 l~~~~  257 (514)
                      .|...
T Consensus       218 ~g~~~  222 (429)
T COG0579         218 AGIPE  222 (429)
T ss_pred             hCCCc
Confidence            66554

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.25  E-value=3.9e-10  Score=116.57  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEecC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      .++...+...|.+.+++.| ++|+++++|++++.                    .++. +.|...++ ++.||. |.|+|
T Consensus       197 ~~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G  254 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALG  254 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCC
Confidence            3566789999999998887 99999999999976                    2233 34665544 699999 99999


Q ss_pred             CCch
Q 010225          245 GKSR  248 (514)
Q Consensus       245 ~~S~  248 (514)
                      .++.
T Consensus       255 ~~~~  258 (416)
T PRK00711        255 SYST  258 (416)
T ss_pred             cchH
Confidence            9985

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.16  E-value=2.5e-10  Score=119.51  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~  130 (514)
                      ...|||+|||||+||+.+|+.+++.    |.+|+|+|++. .++..+|.     +...+..- ....+-++.+| +...+
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~----G~kV~LiE~~~d~iG~m~Cn-----psiGG~ak-g~lvrEidalGg~~g~~   71 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARM----GAKTLLLTHNLDTIGQMSCN-----PAIGGIAK-GHLVREIDALGGEMGKA   71 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHc----CCcEEEEecccccccccCCc-----cccccchh-hHHHHHHHhcCCHHHHH
Confidence            3469999999999999999999997    99999999984 33322331     11111110 11122233343 21222


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .....  + .+.+.+......+         ......+++..+...|.+.+.+.++++++ ...|+++..          
T Consensus        72 ~d~~g--i-q~r~ln~skGpAV---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~----------  128 (618)
T PRK05192         72 IDKTG--I-QFRMLNTSKGPAV---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV----------  128 (618)
T ss_pred             Hhhcc--C-ceeecccCCCCce---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe----------
Confidence            21111  1 1222221110000         00012578899999999999888678875 457888875          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                               +++....|.+.+|..+.|+. |+|+|.++.=
T Consensus       129 ---------e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g  159 (618)
T PRK05192        129 ---------ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG  159 (618)
T ss_pred             ---------cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence                     12244557888899999999 9999987643

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=1.7e-09  Score=99.48  Aligned_cols=150  Identities=19%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC--CCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE--DPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +|+|||+||+|+++|+.|+.+    |++|+||||....+.+-...+.  ....-..-.+.++...+++-+   +.+.+.+
T Consensus         3 siaIVGaGiAGl~aA~~L~~a----G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~g   75 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREA----GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDG   75 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhc----CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCC
Confidence            699999999999999999997    9999999999876533221111  111112233444444443321   2222222


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      ....-.-.+|...+.. ..-..   ...++-..-.-+.|.++|..     . .+|.++++|+.+-.              
T Consensus        76 lV~~W~~~~~~~~~~~-~~~~~---d~~pyvg~pgmsalak~LAt-----d-L~V~~~~rVt~v~~--------------  131 (331)
T COG3380          76 LVDVWTPAVWTFTGDG-SPPRG---DEDPYVGEPGMSALAKFLAT-----D-LTVVLETRVTEVAR--------------  131 (331)
T ss_pred             ceeeccccccccccCC-CCCCC---CCCccccCcchHHHHHHHhc-----c-chhhhhhhhhhhee--------------
Confidence            2111111112111111 00000   01111111122344444433     2 67899999999987              


Q ss_pred             cccccccCCeeEEEeCCCc-EEEeeE-EEec
Q 010225          215 ATTLFTKGHLAKLDLSDGT-SLYAKL-VGAD  243 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-~~~ad~-V~Ad  243 (514)
                            .++.++++.++|. ...+|. |.|-
T Consensus       132 ------~~~~W~l~~~~g~~~~~~d~vvla~  156 (331)
T COG3380         132 ------TDNDWTLHTDDGTRHTQFDDVVLAI  156 (331)
T ss_pred             ------cCCeeEEEecCCCcccccceEEEec
Confidence                  5688999997765 577777 6653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.12  E-value=3.1e-09  Score=114.50  Aligned_cols=71  Identities=20%  Similarity=0.255  Sum_probs=52.2

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE-E
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL-V  240 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~-V  240 (514)
                      .++...+...|.+.+++.| ++++.+++|+++..+         .+        .+..+.|..   .+++  ++.||. |
T Consensus       228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~~---------~~--------~g~v~gV~v~d~~tg~~~~i~a~~VV  289 (627)
T PLN02464        228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIKD---------ES--------TGRIVGARVRDNLTGKEFDVYAKVVV  289 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEEe---------cC--------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence            4688999999999999998 999999999999761         00        122333333   2343  689999 9


Q ss_pred             EecCCCch-hhhhhCC
Q 010225          241 GADGGKSR-VRELAGF  255 (514)
Q Consensus       241 ~AdG~~S~-vR~~l~~  255 (514)
                      .|+|.||. +++.++.
T Consensus       290 nAaGaws~~l~~~~g~  305 (627)
T PLN02464        290 NAAGPFCDEVRKMADG  305 (627)
T ss_pred             ECCCHhHHHHHHhccC
Confidence            99999986 6676653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.12  E-value=2.1e-10  Score=106.19  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=77.3

Q ss_pred             EEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhccC
Q 010225           59 AVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY  137 (514)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~  137 (514)
                      +||||||+||++|+.|.+.    |++ |+|||+++.++........ .  .+  ...+.         ...    .   .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~----g~~~v~v~e~~~~~Gg~w~~~~~-~--~~--~~~~~---------~~~----~---~   55 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER----GIDPVVVLERNDRPGGVWRRYYS-Y--TR--LHSPS---------FFS----S---D   55 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT----T---EEEEESSSSSTTHHHCH-T-T--TT---BSSS---------CCT----G---G
T ss_pred             CEECcCHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCeeEEeCC-C--Cc--cccCc---------ccc----c---c
Confidence            7999999999999999997    899 9999999877432110000 0  00  00000         000    0   0


Q ss_pred             cceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccc
Q 010225          138 FDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATT  217 (514)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~  217 (514)
                      + .+.  +..   ...+.... .............+.++|.+.+++.+ ++++++++|+++.+                 
T Consensus        56 ~-~~~--~~~---~~~~~~~~-~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~-----------------  110 (203)
T PF13738_consen   56 F-GLP--DFE---SFSFDDSP-EWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR-----------------  110 (203)
T ss_dssp             S-S----CCC---HSCHHHHH-HHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE-----------------
T ss_pred             c-cCC--ccc---ccccccCC-CCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE-----------------
Confidence            0 000  000   00000000 00000112678889999999999987 88999999999998                 


Q ss_pred             ccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          218 LFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       218 ~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                         .++.+.|++.++.+++||. |.|+|..|.-
T Consensus       111 ---~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p  140 (203)
T PF13738_consen  111 ---DGDGWTVTTRDGRTIRADRVVLATGHYSHP  140 (203)
T ss_dssp             ---ETTTEEEEETTS-EEEEEEEEE---SSCSB
T ss_pred             ---eccEEEEEEEecceeeeeeEEEeeeccCCC
Confidence               4456999999998899999 9999986653

...

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.09  E-value=1.1e-09  Score=113.57  Aligned_cols=160  Identities=12%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ....+|+||||||+||++|..|.+.    |++|+|||+++..+..+.+........  .++.+.....-  -.+++.+.-
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~----G~~v~vfE~~~~vGG~W~~~~~~~~d~--~~~~~~~~~~~--s~~Y~~L~t   79 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRRE----GHTVVVFEREKQVGGLWVYTPKSESDP--LSLDPTRSIVH--SSVYESLRT   79 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhc----CCeEEEEecCCCCcceeecCCCcCCCc--cccCCCCcccc--hhhhhhhhc
Confidence            3467999999999999999999996    999999999998864332221111000  11111000000  000111110


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCce--EEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      +.  +-..+.+.+......  +.  ...... .....+.++.++|.+.+++.+ +.  |+++++|++++.          
T Consensus        80 n~--p~~~m~f~dfp~~~~--~~--~~~~~~-~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~----------  141 (461)
T PLN02172         80 NL--PRECMGYRDFPFVPR--FD--DESRDS-RRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP----------  141 (461)
T ss_pred             cC--CHhhccCCCCCCCcc--cc--cccCcC-CCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee----------
Confidence            00  000011111000000  00  000000 112457889999999999887 66  899999999976          


Q ss_pred             CCCccccccccCCeeEEEeCCC--c--EEEeeE-EEecCCCch
Q 010225          211 STPSATTLFTKGHLAKLDLSDG--T--SLYAKL-VGADGGKSR  248 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g--~--~~~ad~-V~AdG~~S~  248 (514)
                                .++.+.|+..++  .  +..+|. |.|+|..+.
T Consensus       142 ----------~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        142 ----------VDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             ----------cCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence                      345677776543  2  467899 999998653

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.08  E-value=8.7e-10  Score=115.20  Aligned_cols=73  Identities=15%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL  239 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~  239 (514)
                      +..++...+.+.|.+.+++.|+++|+++++|++++.                   +.++.+.+..   .+|.  ++.|++
T Consensus       177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~-------------------~~dg~~~v~~~~~~~G~~~~i~A~~  237 (494)
T PRK05257        177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR-------------------NDDGSWTVTVKDLKTGEKRTVRAKF  237 (494)
T ss_pred             ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE-------------------CCCCCEEEEEEEcCCCceEEEEcCE
Confidence            357888999999999999887689999999999986                   1223355543   3353  699999


Q ss_pred             -EEecCCCc-hhhhhhCCC
Q 010225          240 -VGADGGKS-RVRELAGFK  256 (514)
Q Consensus       240 -V~AdG~~S-~vR~~l~~~  256 (514)
                       |.|+|.+| .+++.+|..
T Consensus       238 VVvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        238 VFIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             EEECCCcchHHHHHHcCCC
Confidence             88888876 466777665

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.07  E-value=2.9e-09  Score=110.98  Aligned_cols=70  Identities=16%  Similarity=0.218  Sum_probs=55.8

Q ss_pred             EEEehHHHHHHHHHHHhc----CC-CceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-
Q 010225          166 CVVENKVLHSSLLSCMQN----TE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-  239 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~----~g-~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-  239 (514)
                      ..++...+...|.+.+++    .| +++|+++++|++++.                   +.++.+.|.+.+| ++.||. 
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~V  265 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFV  265 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEE
Confidence            467888999999999988    55 378999999999986                   1245677888777 599999 


Q ss_pred             EEecCCCch-hhhhhCC
Q 010225          240 VGADGGKSR-VRELAGF  255 (514)
Q Consensus       240 V~AdG~~S~-vR~~l~~  255 (514)
                      |.|.|.||. +-+.+|.
T Consensus       266 VvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        266 VVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EECcChhHHHHHHHhCC
Confidence            999999985 5566654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.07  E-value=8.1e-09  Score=108.27  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCC--CCcEEEEEcCCCCCCCCCCCCCC-CCC-CCce---EEeChhhHHHHHHcCCcHH
Q 010225           57 DVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKE-DPP-DPRV---STVTPATISFFKEIGAWQY  129 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~--~g~~V~viE~~~~~~~~~~~~~~-~~~-~~~~---~~l~~~~~~~l~~lgl~~~  129 (514)
                      +|+|||||++||++|+.|++.+..  .|++|+|+|+++.++........ +.. ...+   ..-.+...++++++|+.+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~   82 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE   82 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence            699999999999999999985100  14899999999988644321110 000 0001   1123556777888887544

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.06  E-value=2.5e-08  Score=101.95  Aligned_cols=64  Identities=17%  Similarity=0.165  Sum_probs=52.0

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+...|.+.+.+.|...+..++.++.++.                    ....+.|.+.+|. ++||. |.|+|
T Consensus       151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G  209 (387)
T COG0665         151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAG  209 (387)
T ss_pred             CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCc
Confidence            35677899999999999998567777999999975                    1146778888887 99999 99999


Q ss_pred             CCchhh
Q 010225          245 GKSRVR  250 (514)
Q Consensus       245 ~~S~vR  250 (514)
                      .++..-
T Consensus       210 ~~~~~l  215 (387)
T COG0665         210 AWAGEL  215 (387)
T ss_pred             hHHHHH
Confidence            998754

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.05  E-value=9e-09  Score=97.56  Aligned_cols=176  Identities=13%  Similarity=0.094  Sum_probs=104.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChh--hHH----HHHHcC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA--TIS----FFKEIG  125 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~----~l~~lg  125 (514)
                      +.+..||+|||||+-|+++|+.|++.    |.+++++|+.+.+...+.      .++..-.+-+.  -..    .++.+.
T Consensus         4 ~~~~~~viiVGAGVfG~stAyeLaK~----g~killLeqf~~ph~~GS------Shg~sRIiR~~Y~e~~Y~~m~~ea~e   73 (399)
T KOG2820|consen    4 MVKSRDVIIVGAGVFGLSTAYELAKR----GDKILLLEQFPLPHSRGS------SHGISRIIRPAYAEDKYMSMVLEAYE   73 (399)
T ss_pred             cccceeEEEEcccccchHHHHHHHhc----CCeEEEEeccCCCcccCc------ccCcceeechhhhhHHHHHHHHHHHH
Confidence            45678999999999999999999995    999999999998865442      12111111111  000    011111


Q ss_pred             CcHHHHhhhcc--CcceEEEEeCCCc-------------------------------ceeeeccCCC-CCcccEEEEehH
Q 010225          126 AWQYVQQHRHA--YFDKMQVWDYTGL-------------------------------GYTKYNARDV-NKEILGCVVENK  171 (514)
Q Consensus       126 l~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~i~r~  171 (514)
                      .|-.+......  ......++.+...                               ....++.... -....+-++...
T Consensus        74 ~W~~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~  153 (399)
T KOG2820|consen   74 KWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAA  153 (399)
T ss_pred             HHHhChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHH
Confidence            12221111110  0111112211110                               0001111100 011223457788


Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC--ch
Q 010225          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK--SR  248 (514)
Q Consensus       172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~--S~  248 (514)
                      +-.++|.+.+++.| +.++.|.+|+.+...           +      +.+..+.|++.+|..++|+. |.+.|+|  +-
T Consensus       154 kslk~~~~~~~~~G-~i~~dg~~v~~~~~~-----------~------e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl  215 (399)
T KOG2820|consen  154 KSLKALQDKARELG-VIFRDGEKVKFIKFV-----------D------EEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL  215 (399)
T ss_pred             HHHHHHHHHHHHcC-eEEecCcceeeEeec-----------c------CCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence            88999999999998 899999999998761           1      14577889999999999999 9999987  33


Q ss_pred             hhhhhCC
Q 010225          249 VRELAGF  255 (514)
Q Consensus       249 vR~~l~~  255 (514)
                      ++..++.
T Consensus       216 L~~~~~~  222 (399)
T KOG2820|consen  216 LPTSLAI  222 (399)
T ss_pred             cCccccc
Confidence            4443433

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.05  E-value=1.7e-09  Score=114.99  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=51.4

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCC-eeEEEe---CCC--cEEEeeE-
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDL---SDG--TSLYAKL-  239 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~---~~g--~~~~ad~-  239 (514)
                      .++...+...+...+.++| ++++++++|+++..                    .++ .+.|.+   .++  .++.||. 
T Consensus       145 ~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~V  203 (546)
T PRK11101        145 TVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPVV  203 (546)
T ss_pred             EECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCEE
Confidence            5788999999999999988 99999999999986                    222 233443   223  3699999 


Q ss_pred             EEecCCCch-hhhhhCC
Q 010225          240 VGADGGKSR-VRELAGF  255 (514)
Q Consensus       240 V~AdG~~S~-vR~~l~~  255 (514)
                      |.|+|.|+. +.++.+.
T Consensus       204 VnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        204 VNAAGIWGQHIAEYADL  220 (546)
T ss_pred             EECCChhHHHHHHhcCC
Confidence            999999985 4555554

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.05  E-value=7.1e-09  Score=106.56  Aligned_cols=170  Identities=16%  Similarity=0.266  Sum_probs=105.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC---cH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA---WQ  128 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl---~~  128 (514)
                      .+.++||+|||||+.|+-+|+-++.    +|++|+|+|+++..+         ...++...|-..+++.|++..+   .+
T Consensus         9 ~~~~~DviVIGGGitG~GiArDaA~----RGl~v~LvE~~D~As---------GTSsrstkLiHGGlRYl~~~e~~lvrE   75 (532)
T COG0578           9 RMEEFDVIVIGGGITGAGIARDAAG----RGLKVALVEKGDLAS---------GTSSRSTKLIHGGLRYLEQYEFSLVRE   75 (532)
T ss_pred             cccCCCEEEECCchhhHHHHHHHHh----CCCeEEEEecCcccC---------cccCccccCccchhhhhhhcchHHHHH
Confidence            3478999999999999999999999    599999999999764         2334455555666666665422   12


Q ss_pred             HHHhhhc---------cCcceE-EEEeCC-----------------Cc-----ceeeeccC-------CC-------CCc
Q 010225          129 YVQQHRH---------AYFDKM-QVWDYT-----------------GL-----GYTKYNAR-------DV-------NKE  162 (514)
Q Consensus       129 ~~~~~~~---------~~~~~~-~~~~~~-----------------~~-----~~~~~~~~-------~~-------~~~  162 (514)
                      .+.+...         .+...+ -+++..                 +.     ....+...       .+       ...
T Consensus        76 al~Er~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~  155 (532)
T COG0578          76 ALAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFR  155 (532)
T ss_pred             HHHHHHHHHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEE
Confidence            2222111         111000 001100                 00     00000000       00       001


Q ss_pred             ccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC---c--EEEe
Q 010225          163 ILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---T--SLYA  237 (514)
Q Consensus       163 ~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g---~--~~~a  237 (514)
                      +.-+.++-..|.-.....+.+.| .+++..++|+.+.+                    +++.+.|...|.   +  +++|
T Consensus       156 y~D~~vddaRLv~~~a~~A~~~G-a~il~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira  214 (532)
T COG0578         156 YPDGVVDDARLVAANARDAAEHG-AEILTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRA  214 (532)
T ss_pred             EccceechHHHHHHHHHHHHhcc-cchhhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEc
Confidence            11245777788888888888888 89999999999987                    334566766543   3  5999


Q ss_pred             eE-EEecCCCch-hhhhhCC
Q 010225          238 KL-VGADGGKSR-VRELAGF  255 (514)
Q Consensus       238 d~-V~AdG~~S~-vR~~l~~  255 (514)
                      +. |+|+|.|+- +++..+.
T Consensus       215 ~~VVNAaGpW~d~i~~~~~~  234 (532)
T COG0578         215 RAVVNAAGPWVDEILEMAGL  234 (532)
T ss_pred             CEEEECCCccHHHHHHhhcc
Confidence            99 999999996 4666643

>PLN02661 Putative thiazole synthesis

Probab=99.05  E-value=4.3e-09  Score=103.16  Aligned_cols=141  Identities=18%  Similarity=0.246  Sum_probs=86.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .++||+|||||++|+++|+.|++.   .|++|+||||...++...|....   ......+.....++|+++|+       
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~gg~---l~~~~vv~~~a~e~LeElGV-------  157 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWLGGQ---LFSAMVVRKPAHLFLDELGV-------  157 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHc---CCCeEEEEecCcccccceeeCcc---cccccccccHHHHHHHHcCC-------
Confidence            468999999999999999999975   38999999998877543331000   00011122224455555554       


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         +++.      ...              +....+-..+.+.|.+.+.+.++++++.++.|+++..+            
T Consensus       158 ---~fd~------~dg--------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~------------  202 (357)
T PLN02661        158 ---PYDE------QEN--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK------------  202 (357)
T ss_pred             ---Cccc------CCC--------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec------------
Confidence               1110      000              00111335566788887776656999999999999871            


Q ss_pred             ccccccccCCeeEEEe-------C--C-----CcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDL-------S--D-----GTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~-------~--~-----g~~~~ad~-V~AdG~~S~v  249 (514)
                             ++....+.+       .  +     ...+.|+. |.|+|..+++
T Consensus       203 -------~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~  246 (357)
T PLN02661        203 -------GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF  246 (357)
T ss_pred             -------CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence                   112222221       1  1     12589999 9999977654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.04  E-value=1.3e-07  Score=99.13  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=47.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCC-CC-CCceE---EeChhhHHHHHHcCCcHHH
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED-PP-DPRVS---TVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~-~~-~~~~~---~l~~~~~~~l~~lgl~~~~  130 (514)
                      .||+|||||++||++|+.|++...+.|++|+|+|+++.++......... .. ...+.   .-.++..++++++|+...+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            5899999999999999999994100189999999999875332111000 00 00001   1124577888888875543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.04  E-value=5.9e-09  Score=108.89  Aligned_cols=71  Identities=13%  Similarity=0.212  Sum_probs=54.2

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCC--cEEEeeE-
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDG--TSLYAKL-  239 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g--~~~~ad~-  239 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                   ++++.+.+..   .+|  .+++||+ 
T Consensus       173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~-------------------~~~~~v~v~~~~~~~g~~~~i~A~~V  232 (483)
T TIGR01320       173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKR-------------------QSDGSWTVTVKNTRTGGKRTLNTRFV  232 (483)
T ss_pred             EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------------------cCCCeEEEEEeeccCCceEEEECCEE
Confidence            46899999999999999887 99999999999976                   1223455543   234  2689999 


Q ss_pred             EEecCCCc-hhhhhhCCC
Q 010225          240 VGADGGKS-RVRELAGFK  256 (514)
Q Consensus       240 V~AdG~~S-~vR~~l~~~  256 (514)
                      |.|.|.+| .+++.+|..
T Consensus       233 V~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       233 FVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EECCCcchHHHHHHcCCC
Confidence            99999876 467777765

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.03  E-value=1.4e-10  Score=119.87  Aligned_cols=152  Identities=21%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeCh-hhHHHHHHcCCcHHHHhhhc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~~~~~~~~  135 (514)
                      |||||||||+|+++|+.+++.    |.+|+|||+...++....       .+....+.. .... ...-|+..++.+...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~----G~~VlLiE~~~~lGG~~t-------~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~   68 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA----GAKVLLIEKGGFLGGMAT-------SGGVSPFDGNHDED-QVIGGIFREFLNRLR   68 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT----TS-EEEE-SSSSSTGGGG-------GSSS-EETTEEHHH-HHHHHHHHHHHHST-
T ss_pred             CEEEECccHHHHHHHHHHHHC----CCEEEEEECCccCCCcce-------ECCcCChhhcchhh-ccCCCHHHHHHHHHh
Confidence            899999999999999999997    999999999998753221       111111111 1111 111133444444222


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                      . ....           ...  ........+.+++..+...|.+.+.+.| ++|+++++|+++..+              
T Consensus        69 ~-~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~--------------  119 (428)
T PF12831_consen   69 A-RGGY-----------PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRD--------------  119 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             h-hccc-----------ccc--cccccccccccccccccccccccccccc-ccccccccccccccc--------------
Confidence            1 0000           000  0000000135667777788888887766 999999999999871              


Q ss_pred             ccccccCCeeEEEeCC--C-cEEEeeE-EEecCCCchhhhhhCC
Q 010225          216 TTLFTKGHLAKLDLSD--G-TSLYAKL-VGADGGKSRVRELAGF  255 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~--g-~~~~ad~-V~AdG~~S~vR~~l~~  255 (514)
                           .+....|.+.+  | .++.|++ |+|+|- +.+-...|.
T Consensus       120 -----~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG~  157 (428)
T PF12831_consen  120 -----GGRITGVIVETKSGRKEIRAKVFIDATGD-GDLAALAGA  157 (428)
T ss_dssp             --------------------------------------------
T ss_pred             -----ccccccccccccccccccccccccccccc-ccccccccc
Confidence                 12333444433  3 4799999 999994 555444443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.02  E-value=5e-09  Score=108.83  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEE---eCCCc--EEEeeE
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKL  239 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~  239 (514)
                      +..++...+.+.|.+.+.+.++++++++++|+++++                   +.++.|.+.   ..++.  +++||+
T Consensus       178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~-------------------~~d~~w~v~v~~t~~g~~~~i~Ad~  238 (497)
T PRK13339        178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER-------------------LSDGGWEVTVKDRNTGEKREQVADY  238 (497)
T ss_pred             ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------CCCCCEEEEEEecCCCceEEEEcCE
Confidence            356889999999999997554499999999999976                   113456665   33452  689999


Q ss_pred             -EEecCCCch-hhhhhCCC
Q 010225          240 -VGADGGKSR-VRELAGFK  256 (514)
Q Consensus       240 -V~AdG~~S~-vR~~l~~~  256 (514)
                       |.|.|.+|. +.+.+|..
T Consensus       239 VV~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        239 VFIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             EEECCCcchHHHHHHcCCC
Confidence             999999984 56666654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.02  E-value=3.4e-09  Score=105.45  Aligned_cols=147  Identities=18%  Similarity=0.245  Sum_probs=89.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCceEEeCh-hhHHHHHHcC-CcHHHHhh
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIG-AWQYVQQH  133 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~vi-E~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lg-l~~~~~~~  133 (514)
                      ||+|||||.||+.+|+.+++.    |.+|+|| ++.+..+..+|.     +  .-.++.. ...+.++.+| +.-.+...
T Consensus         1 DViVVGgG~AG~eAA~aaAr~----G~~V~Lit~~~d~i~~~~Cn-----p--sigg~~kg~L~~Eidalgg~m~~~aD~   69 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM----GAKVLLITHNTDTIGEMSCN-----P--SIGGIAKGHLVREIDALGGLMGRAADE   69 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----T--EEEEES-GGGTT--SSS-----S--EEESTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCEEEEeecccccccccch-----h--hhccccccchhHHHhhhhhHHHHHHhH
Confidence            899999999999999999997    9999999 555555444441     1  1111111 1122344454 21122111


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      ..   -.+++.+....         ......-+.++|..+.+++.+.+++.++++|+. .+|+++..             
T Consensus        70 ~~---i~~~~lN~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-------------  123 (392)
T PF01134_consen   70 TG---IHFRMLNRSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-------------  123 (392)
T ss_dssp             HE---EEEEEESTTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-------------
T ss_pred             hh---hhhhcccccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-------------
Confidence            11   11222222111         011222358999999999999999988899875 58999986             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                            +.+....|.+.+|.++.||. |.|+|.+
T Consensus       124 ------e~~~v~GV~~~~g~~~~a~~vVlaTGtf  151 (392)
T PF01134_consen  124 ------ENGKVKGVVTKDGEEIEADAVVLATGTF  151 (392)
T ss_dssp             ------CTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred             ------cCCeEEEEEeCCCCEEecCEEEEecccc
Confidence                  23466779999999999999 9999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.01  E-value=2e-09  Score=112.47  Aligned_cols=60  Identities=18%  Similarity=0.092  Sum_probs=50.2

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+...|.+.+++.| ++|+.+++|++++.                     ++.+.|++.+| ++.||. |.|+|
T Consensus       178 g~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atg  234 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALN  234 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEccc
Confidence            46788999999999999988 99999999999964                     23456777777 599999 99999


Q ss_pred             CCch
Q 010225          245 GKSR  248 (514)
Q Consensus       245 ~~S~  248 (514)
                      .++.
T Consensus       235 a~s~  238 (460)
T TIGR03329       235 AWMA  238 (460)
T ss_pred             cccc
Confidence            9864

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.00  E-value=3.8e-08  Score=93.21  Aligned_cols=201  Identities=15%  Similarity=0.111  Sum_probs=108.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC-----CCCCCCCCCceEEeChhhHHHHHH----
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF-----IKKEDPPDPRVSTVTPATISFFKE----  123 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~l~~----  123 (514)
                      +...||+|||||..|++.|+.|++.....|++|+|+|+++...+.+.     ...++...+..+.++--+.++|+.    
T Consensus        84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh  163 (509)
T KOG2853|consen   84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH  163 (509)
T ss_pred             ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence            34679999999999999999998754446899999999997764431     011122223333344444455543    


Q ss_pred             cCCcHHHH-hhhccCcceEEEEeCCC---------------ccee---------eeccCCC--------CCcccEEEEeh
Q 010225          124 IGAWQYVQ-QHRHAYFDKMQVWDYTG---------------LGYT---------KYNARDV--------NKEILGCVVEN  170 (514)
Q Consensus       124 lgl~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~---------~~~~~~~--------~~~~~~~~i~r  170 (514)
                      +|+.+.-. ...+.+-..+.......               .+..         .|+.-..        +-... -+++.
T Consensus       164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~E-Gwfdp  242 (509)
T KOG2853|consen  164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKE-GWFDP  242 (509)
T ss_pred             hccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccc-cccCH
Confidence            33211100 00111111111111000               0000         0000000        00111 24677


Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCc
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKS  247 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S  247 (514)
                      -.|...+++.+..+| +.+.-| +|++++...+.++....-+....--...-.++.|+..|+.  +++|++ |.|.|+||
T Consensus       243 w~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s  320 (509)
T KOG2853|consen  243 WALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS  320 (509)
T ss_pred             HHHHHHHHHHhhhhc-ceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH
Confidence            788889999999998 887666 8999988544432222211100000001134667766664  699999 99999999


Q ss_pred             h-hhhhhCCC
Q 010225          248 R-VRELAGFK  256 (514)
Q Consensus       248 ~-vR~~l~~~  256 (514)
                      - |.+..|+.
T Consensus       321 ~QvArlAgIG  330 (509)
T KOG2853|consen  321 GQVARLAGIG  330 (509)
T ss_pred             HHHHHHhccC
Confidence            6 45555554

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.99  E-value=1.8e-09  Score=109.66  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=46.3

Q ss_pred             EEEehHHHHHHHHHHHhcC-CCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEec
Q 010225          166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~-g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      ..++...+...|.+.+.+. | ++++.+++|++++.                      .  .|.+.+|. +.||. |.|+
T Consensus       140 g~v~p~~~~~~l~~~~~~~~G-v~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~  193 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHG-VEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCP  193 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCC-CEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECC
Confidence            4578888999999988765 6 99999999999964                      2  56666665 78999 9999


Q ss_pred             CCCch
Q 010225          244 GGKSR  248 (514)
Q Consensus       244 G~~S~  248 (514)
                      |.+|.
T Consensus       194 G~~s~  198 (365)
T TIGR03364       194 GADFE  198 (365)
T ss_pred             CCChh
Confidence            99874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=2.3e-09  Score=109.30  Aligned_cols=141  Identities=15%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHc--CCcHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI--GAWQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~  130 (514)
                      ++..+|+||||||+||++|..|.+.    |+.|+|+||.+.++..+-+.....       ....  .+.+.+  .+..++
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~----g~~v~vfEr~~~iGGlW~y~~~~~-------~~~s--s~Y~~l~tn~pKe~   70 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLRE----GHEVVVFERTDDIGGLWKYTENVE-------VVHS--SVYKSLRTNLPKEM   70 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHC----CCCceEEEecCCccceEeecCccc-------cccc--chhhhhhccCChhh
Confidence            4567999999999999999999997    999999999998853321110000       0000  111111  111111


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCCCCCccc
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      .                  ....+   ........+..++.++.++|.+.+++.+ ...|.++++|..++.         
T Consensus        71 ~------------------~~~df---pf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~---------  120 (448)
T KOG1399|consen   71 M------------------GYSDF---PFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS---------  120 (448)
T ss_pred             h------------------cCCCC---CCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee---------
Confidence            1                  00111   1112223455677899999999999876 347899999999976         


Q ss_pred             CCCCccccccccC-CeeEEEeCCC----cEEEeeE-EEecCCCc
Q 010225          210 DSTPSATTLFTKG-HLAKLDLSDG----TSLYAKL-VGADGGKS  247 (514)
Q Consensus       210 ~~~~~~~~~~~~~-~~~~v~~~~g----~~~~ad~-V~AdG~~S  247 (514)
                                 .. +.|.|.+.++    ....+|. |.|+|.+.
T Consensus       121 -----------~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  121 -----------IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             -----------ccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence                       33 5788877654    3678999 99999983

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.98  E-value=2.6e-07  Score=96.53  Aligned_cols=68  Identities=22%  Similarity=0.375  Sum_probs=45.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCCCCCCCCCCC-CCCCCce----EEeChhhHHHHHHcCCcH
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAWQ  128 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~~  128 (514)
                      +|+|||||++||++|+.|++.    |  ++|+|+|+++.++........ +.....|    ..-.++..++++++|+.+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~----G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~   76 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK----GPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED   76 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh----CCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence            699999999999999999996    6  899999999987643221100 0000011    112345677888888753

>PRK07233 hypothetical protein; Provisional

Probab=98.97  E-value=1.9e-07  Score=96.97  Aligned_cols=67  Identities=27%  Similarity=0.384  Sum_probs=46.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC-CCCCCce----EEeChhhHHHHHHcCCc
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAW  127 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~  127 (514)
                      +|+|||||++||++|+.|++.    |++|+|+|+.+.++........ +.....+    ..-.+...++++++|+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~   72 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR----GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE   72 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC
Confidence            599999999999999999996    9999999999988754321111 1110011    11235667778888764

>PLN02612 phytoene desaturase

Probab=98.94  E-value=8.6e-07  Score=94.80  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCce----EEeChhhHHHHHHcCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGA  126 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl  126 (514)
                      ..+.+|+|||||++||++|+.|+++    |++|+|+|+.+.++.......  .+.....|    ....++..++|+++|+
T Consensus        91 ~~~~~v~iiG~G~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~  166 (567)
T PLN02612         91 AKPLKVVIAGAGLAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGI  166 (567)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCC
Confidence            3467999999999999999999996    999999999887654332111  11111111    1234677888999987


Q ss_pred             cHH
Q 010225          127 WQY  129 (514)
Q Consensus       127 ~~~  129 (514)
                      .+.
T Consensus       167 ~~~  169 (567)
T PLN02612        167 NDR  169 (567)
T ss_pred             ccc
Confidence            544

>TIGR00275 flavoprotein, HI0933 family

Probab=98.94  E-value=3.6e-09  Score=108.32  Aligned_cols=155  Identities=20%  Similarity=0.281  Sum_probs=84.6

Q ss_pred             EEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChh-hHHHHHHcCCcHHHHhhhccC
Q 010225           59 AVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIGAWQYVQQHRHAY  137 (514)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lgl~~~~~~~~~~~  137 (514)
                      +|||||++|+++|+.|++.    |++|+|+||++.++.+...    ...++....+.. ...+++.++-...+.......
T Consensus         1 vIIGgG~aGl~aAi~aa~~----G~~V~llEk~~~~G~k~~~----sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~   72 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE----GLSVLLLEKNKKIGKKLLI----SGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR   72 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc----CCcEEEEecCccccccccc----cCCceEEccCCCcchhHHHhcCCCcHHHHHHHHh
Confidence            6999999999999999996    9999999999876532110    011111111100 111112221101110000000


Q ss_pred             c---ceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          138 F---DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       138 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      +   +.+.++...+......   . ....+...-....+.+.|.+.+++.+ ++++++++|++++.              
T Consensus        73 ~~~~d~~~~~~~~Gv~~~~~---~-~g~~~p~~~~a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~--------------  133 (400)
T TIGR00275        73 FSNKDLIDFFESLGLELKVE---E-DGRVFPCSDSAADVLDALLNELKELG-VEILTNSKVKSIKK--------------  133 (400)
T ss_pred             CCHHHHHHHHHHcCCeeEEe---c-CCEeECCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence            0   0000011111100000   0 00000001135778899999998887 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                            .++.+.+.. ++.++.||. |.|+|.+|
T Consensus       134 ------~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       134 ------DDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             ------cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence                  334566666 456799999 99999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.94  E-value=3.1e-07  Score=97.34  Aligned_cols=63  Identities=16%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|..                   +++..+.|.+.+|+++.||. |.|.+....+
T Consensus       219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~  278 (502)
T TIGR02734       219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY  278 (502)
T ss_pred             HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence            667888899998887 89999999999986                   12244678888898899999 9988877766


Q ss_pred             hhhh
Q 010225          250 RELA  253 (514)
Q Consensus       250 R~~l  253 (514)
                      ...+
T Consensus       279 ~~l~  282 (502)
T TIGR02734       279 RRLL  282 (502)
T ss_pred             HHhc
Confidence            6555

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02730 carot_isom carotene isomerase

Probab=98.93  E-value=3.3e-07  Score=96.81  Aligned_cols=64  Identities=23%  Similarity=0.358  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|..                   +.+....|++.+|.+++||. |.|.|.+..+
T Consensus       229 ~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       229 GQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             HHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence            668888999999988 89999999999976                   12355678888898899999 9999999888


Q ss_pred             hhhhC
Q 010225          250 RELAG  254 (514)
Q Consensus       250 R~~l~  254 (514)
                      ++.+.
T Consensus       289 ~~Ll~  293 (493)
T TIGR02730       289 GKLLK  293 (493)
T ss_pred             HHhCC
Confidence            77764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.90  E-value=1.2e-08  Score=100.41  Aligned_cols=112  Identities=23%  Similarity=0.350  Sum_probs=78.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      |||+|||||++|+++|..|++.    |++|+|||+.+ ++              + .+...                   
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g-~~~~~-------------------   41 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA----NLKTLIIEGME-PG--------------G-QLTTT-------------------   41 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCCEEEEeccC-CC--------------c-ceeec-------------------
Confidence            6999999999999999999996    99999999886 21              0 00000                   


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                         ..+..+  .+     +.          ..+....+...+.+.+++.+ +++++ .+|++++.               
T Consensus        42 ---~~~~~~--~~-----~~----------~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~---------------   84 (300)
T TIGR01292        42 ---TEVENY--PG-----FP----------EGISGPELMEKMKEQAVKFG-AEIIY-EEVIKVDL---------------   84 (300)
T ss_pred             ---cccccc--CC-----CC----------CCCChHHHHHHHHHHHHHcC-CeEEE-EEEEEEEe---------------
Confidence               000000  00     00          01233567788888888887 89988 79999976               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                           .++.+.+...++.++.+|. |.|+|....
T Consensus        85 -----~~~~~~v~~~~~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        85 -----SDRPFKVKTGDGKEYTAKAVIIATGASAR  113 (300)
T ss_pred             -----cCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence                 3356777777888899999 999998643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.88  E-value=1.8e-08  Score=105.62  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..++||||||||++|+++|+.|++.    |.+|+||||.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREA----GASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence            4568999999999999999999996    999999999874

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.87  E-value=1.4e-08  Score=104.89  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=38.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSN   98 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~   98 (514)
                      +.+..+||+|||||++|+++|+.|.++    |.. ++||||++..+..+
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~----g~~~~~i~Ek~~~~Gg~W   48 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQA----GVPDFVIFEKRDDVGGTW   48 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHHc----CCCcEEEEEccCCcCCcc
Confidence            345678999999999999999999997    888 99999999885443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.85  E-value=3.1e-08  Score=104.64  Aligned_cols=40  Identities=30%  Similarity=0.566  Sum_probs=35.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...++||||||+|++|+++|+.+++.    |.+|+||||.+..+
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~----Ga~VivlEK~~~~G   97 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDA----GMNPVILEKMPVAG   97 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence            34578999999999999999999996    99999999998764

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.84  E-value=4.9e-08  Score=103.79  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||+|||+|+|||++|+.+++.    |.+|+|+||....+
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~----G~~VilleK~~~~~   52 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRA----GRRVLVVTKAALDD   52 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHc----CCeEEEEEccCCCC
Confidence            35679999999999999999999996    99999999998654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.84  E-value=2.6e-08  Score=105.64  Aligned_cols=113  Identities=26%  Similarity=0.400  Sum_probs=82.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|..|++.    |++|+|+|+.  ++               ..+..       ..+       
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~----G~~v~li~~~--~G---------------G~~~~-------~~~-------  253 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARK----GIRTGIVAER--FG---------------GQVLD-------TMG-------  253 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC---------------Ceeec-------cCc-------
Confidence            4569999999999999999999996    9999999754  21               00000       000       


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           +.     +..+     +.           .....++...|.+.+++.+ ++++++++|+++..            
T Consensus       254 -----~~-----~~~~-----~~-----------~~~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~------------  294 (517)
T PRK15317        254 -----IE-----NFIS-----VP-----------ETEGPKLAAALEEHVKEYD-VDIMNLQRASKLEP------------  294 (517)
T ss_pred             -----cc-----ccCC-----CC-----------CCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe------------
Confidence                 00     0000     00           1234678889999999887 99999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                              .++.+.|.+.+|.++.+|. |.|+|..+
T Consensus       295 --------~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        295 --------AAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             --------cCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence                    3356777788888899999 99999966

>PLN02576 protoporphyrinogen oxidase

Probab=98.83  E-value=1.6e-06  Score=91.86  Aligned_cols=41  Identities=37%  Similarity=0.558  Sum_probs=35.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..+||+|||||++||++|+.|++.   .|++|+|+|+++.++..
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~---~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASK---HGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHh---cCCCEEEEecCCCCCCc
Confidence            456999999999999999999994   17999999999988644

>PLN02568 polyamine oxidase

Probab=98.81  E-value=1.5e-06  Score=91.90  Aligned_cols=46  Identities=15%  Similarity=0.400  Sum_probs=36.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCC-CCCcEEEEEcCCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPL-TKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~-~~g~~V~viE~~~~~~~~   97 (514)
                      +++..||+|||||++||++|+.|++.+. .+|++|+|+|++..++..
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr   48 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR   48 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence            3456799999999999999999998610 123999999999987644

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.80  E-value=4.4e-08  Score=102.70  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHHHhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQH  133 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~  133 (514)
                      |||+|||||++|+.+|..+++.    |.+|+|+|++... +..+|..   ...+.+.+.   ..+-++.+| ....+...
T Consensus         1 yDViVIGaG~AGl~aA~ala~~----G~~v~Lie~~~~~~g~~~c~p---s~gG~a~g~---l~rEidaLGG~~~~~~d~   70 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM----GAKTLLLTLNLDTIGKCSCNP---AIGGPAKGI---LVKEIDALGGLMGKAADK   70 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC----CCCEEEEecccccccCCCccc---cccccccch---hhhhhhcccchHHHHHHh
Confidence            6999999999999999999996    9999999997532 2222210   000001111   112233333 11222111


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      ..   ..+...+......         .......+++..+...+.+.+++.++++++.+ .|+++...            
T Consensus        71 ~~---i~~r~ln~skgpA---------V~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e------------  125 (617)
T TIGR00136        71 AG---LQFRVLNSSKGPA---------VRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILE------------  125 (617)
T ss_pred             hc---eeheecccCCCCc---------ccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEe------------
Confidence            11   1111111111000         00111367899999999999999877888766 78888650            


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                            +++....|.+.+|..+.|+. |.|+|.+..-+-.+
T Consensus       126 ------~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi  160 (617)
T TIGR00136       126 ------DNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI  160 (617)
T ss_pred             ------cCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence                  02355678888888999999 99999997544333

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.80  E-value=2.5e-08  Score=103.82  Aligned_cols=35  Identities=34%  Similarity=0.625  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALG   95 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~   95 (514)
                      ||||||||++|+++|+.+++.    | .+|+||||.+..+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~----G~~~V~vlEk~~~~g   36 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKA----GAANVVLLEKMPVIG   36 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHc----CCccEEEEecCCCCC
Confidence            899999999999999999996    9 9999999998654

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN02268 probable polyamine oxidase

Probab=98.78  E-value=3.2e-06  Score=87.90  Aligned_cols=67  Identities=22%  Similarity=0.336  Sum_probs=46.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC-CCCceEEe-----ChhhHHHHHHcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP-PDPRVSTV-----TPATISFFKEIGA  126 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~-~~-~~~~~~~l-----~~~~~~~l~~lgl  126 (514)
                      .+|+|||||++||++|+.|.+.    |++|+|+|+++.++.+.+.... .. ....+..+     .+...++++++|+
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~----g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl   74 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDA----SFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGL   74 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCC
Confidence            3799999999999999999996    9999999999998866543211 11 11112222     2224567788887

>TIGR00551 nadB L-aspartate oxidase

Probab=98.75  E-value=1.3e-07  Score=99.52  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC-C--cEEEeeE-EEecCC
Q 010225          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-G--TSLYAKL-VGADGG  245 (514)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~-V~AdG~  245 (514)
                      -..+...|.+.+++..+++|+++++|+++..                   +++....+...+ +  ..+.|+. |.|+|.
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-------------------~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG  187 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLI-------------------ETGRVVGVWVWNRETVETCHADAVVLATGG  187 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeec-------------------cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence            3578899999998754599999999999976                   111223233322 2  3689999 999999


Q ss_pred             Cchhhh
Q 010225          246 KSRVRE  251 (514)
Q Consensus       246 ~S~vR~  251 (514)
                      +|.+..
T Consensus       188 ~~~~~~  193 (488)
T TIGR00551       188 AGKLYQ  193 (488)
T ss_pred             ccCCCC
Confidence            998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.75  E-value=5.2e-08  Score=98.03  Aligned_cols=122  Identities=15%  Similarity=0.169  Sum_probs=80.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH-HHhhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-VQQHR  134 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~-~~~~~  134 (514)
                      .||+|||||++|+.+|+.|++.    |++|+|||+++.......  .......+....+..+...+...|+|.. +...+
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~----Gl~V~LiE~rp~~~s~a~--~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lg   76 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR----GVPVELYEMRPVKKTPAH--HTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLG   76 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccCcccc--cCccccccccchhhhhhhHHhcCCchHHHHHHhc
Confidence            5899999999999999999996    999999998876532110  0011223445566667777888898863 33221


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCccc-EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEIL-GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA  199 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~  199 (514)
                      .     +.+...+          ....... ...++|..+.+.|.+.+++.++++++ ..+|+++.
T Consensus        77 s-----l~~~aad----------~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         77 S-----LIMEAAD----------AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             c-----hheeccc----------ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence            1     1111100          0011111 24688999999999999998889988 45888773

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.74  E-value=7.2e-08  Score=102.11  Aligned_cols=113  Identities=26%  Similarity=0.328  Sum_probs=80.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||..  ++              | .+. .      ..+       
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~----G~~v~li~~~--~G--------------G-~~~-~------~~~-------  254 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK----GLRTAMVAER--IG--------------G-QVK-D------TVG-------  254 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------C-ccc-c------CcC-------
Confidence            4569999999999999999999996    9999999742  21              0 000 0      000       


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           +..+  .   +             ..   ......+...+.+.+++.+ ++++.+++|++++.            
T Consensus       255 -----~~~~--~---~-------------~~---~~~~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~------------  295 (515)
T TIGR03140       255 -----IENL--I---S-------------VP---YTTGSQLAANLEEHIKQYP-IDLMENQRAKKIET------------  295 (515)
T ss_pred             -----cccc--c---c-------------cC---CCCHHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe------------
Confidence                 0000  0   0             00   0234567788888888876 99999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                              .++.+.+.+.+|.++.+|. |.|+|...
T Consensus       296 --------~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       296 --------EDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence                    3345777778888899999 99999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=8.7e-08  Score=93.45  Aligned_cols=114  Identities=24%  Similarity=0.286  Sum_probs=77.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +.+||+||||||+||++|+.++++    +++ ++|+|+...-+                .+.           .      
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~----~l~~~li~~~~~~gg----------------~~~-----------~------   44 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGEPGG----------------QLT-----------K------   44 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHc----CCCcEEEEecCCcCC----------------ccc-----------c------
Confidence            468999999999999999999997    888 66666654210                000           0      


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           ..  .+-+..             ..+  -.+.-..|.+.+.+.+...+ +++.. ..|..++.            
T Consensus        45 -----~~--~venyp-------------g~~--~~~~g~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~------------   88 (305)
T COG0492          45 -----TT--DVENYP-------------GFP--GGILGPELMEQMKEQAEKFG-VEIVE-DEVEKVEL------------   88 (305)
T ss_pred             -----ce--eecCCC-------------CCc--cCCchHHHHHHHHHHHhhcC-eEEEE-EEEEEEee------------
Confidence                 00  000000             000  01345678888888888777 88777 57777765            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                              .++...|.+.++. ++|+. |.|+|....-
T Consensus        89 --------~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          89 --------EGGPFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             --------cCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence                    2227888888888 99999 9999986654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.74  E-value=1.3e-07  Score=94.39  Aligned_cols=86  Identities=22%  Similarity=0.305  Sum_probs=58.6

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC---C--cEEEeeE
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL  239 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~  239 (514)
                      |.-++-..|.+.|.+.+.+.++++++++++|++|.+                   ..++.|.|...|   |  .++.|++
T Consensus       175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~F  235 (488)
T PF06039_consen  175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKF  235 (488)
T ss_pred             CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCE
Confidence            356788999999999999886699999999999988                   133557776532   2  4799999


Q ss_pred             --EEecCCCchhhhhhCCC----ccCCCCCceEEEE
Q 010225          240 --VGADGGKSRVRELAGFK----TTGWSYSQNAIIC  269 (514)
Q Consensus       240 --V~AdG~~S~vR~~l~~~----~~~~~~~~~~~~~  269 (514)
                        |||-|..=++-...|++    +-+++.+-.++.+
T Consensus       236 VfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~  271 (488)
T PF06039_consen  236 VFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRC  271 (488)
T ss_pred             EEECCchHhHHHHHHcCChhhcccCCCcccceEEec
Confidence              55555444555555542    3333444444444

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07121 hypothetical protein; Validated

Probab=98.72  E-value=1.3e-07  Score=99.84  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=35.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +.++||||||+|.+|+++|+.+++.    |.+|+||||.+..+
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~----G~~VillEK~~~~g   56 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAA----GARVLVLERAAGAG   56 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCC
Confidence            4579999999999999999999996    99999999998754

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.71  E-value=1.5e-06  Score=88.46  Aligned_cols=71  Identities=20%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCCCCCCCC-CCCCCC---CCceEEeC-hhhHHHHHHcCCcHH
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFI-KKEDPP---DPRVSTVT-PATISFFKEIGAWQY  129 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~~~~~~~-~~~~~~---~~~~~~l~-~~~~~~l~~lgl~~~  129 (514)
                      .|+|||||++||++|+.|++.    +  ..|+|||+++..+..-.. ......   .+...... +..++.++++|+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~   77 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDK   77 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHh
Confidence            599999999999999999997    6  899999999877522110 000000   01112223 667788899999887


Q ss_pred             HH
Q 010225          130 VQ  131 (514)
Q Consensus       130 ~~  131 (514)
                      +.
T Consensus        78 l~   79 (444)
T COG1232          78 LL   79 (444)
T ss_pred             hc
Confidence            77

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.71  E-value=7.7e-08  Score=101.30  Aligned_cols=146  Identities=17%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||++||++|..|.+.    |++|++|||.+.++..+.+... ...+++              .+++.+.-+  
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~----g~~~~~fE~~~~iGG~W~~~~~-~~~g~~--------------~~y~sl~~n--   60 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEE----GLEVTCFEKSDDIGGLWRYTEN-PEDGRS--------------SVYDSLHTN--   60 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHT----T-EEEEEESSSSSSGGGCHSTT-CCCSEG--------------GGSTT-B-S--
T ss_pred             CEEEEECccHHHHHHHHHHHHC----CCCCeEEecCCCCCccCeeCCc-CCCCcc--------------ccccceEEe--
Confidence            4799999999999999999996    9999999999988533321110 000000              001111000  


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                 .......|..-..+...+ -..++.++.++|.+.+++.+ .-.|+++++|+++++         ..|. 
T Consensus        61 -----------~sk~~~~fsdfp~p~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~---------~~d~-  118 (531)
T PF00743_consen   61 -----------TSKEMMAFSDFPFPEDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER---------DPDF-  118 (531)
T ss_dssp             -----------S-GGGSCCTTS-HCCCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE---------ETTT-
T ss_pred             -----------eCchHhcCCCcCCCCCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeee---------cccc-
Confidence                       000000011000011111 13578999999999999875 136899999999987         1111 


Q ss_pred             cccccccCCeeEEEeCC-Cc--EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSD-GT--SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~-g~--~~~ad~-V~AdG~~S~v  249 (514)
                           ...+.|.|+..+ |+  +-.+|. |.|+|.++.-
T Consensus       119 -----~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P  152 (531)
T PF00743_consen  119 -----SATGKWEVTTENDGKEETEEFDAVVVATGHFSKP  152 (531)
T ss_dssp             -----T-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred             -----CCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence                 023568887754 43  456899 9999998743

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.71  E-value=6.6e-08  Score=104.19  Aligned_cols=39  Identities=31%  Similarity=0.397  Sum_probs=35.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||+|+|||++|+.+++.    |.+|+|+||....+
T Consensus        48 ~~~~DVlVIG~G~AGl~AAl~Aae~----G~~VilveK~~~~~   86 (635)
T PLN00128         48 DHTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFPTR   86 (635)
T ss_pred             eeecCEEEECccHHHHHHHHHHHhc----CCcEEEEEcCCCCC
Confidence            3568999999999999999999996    99999999987654

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.70  E-value=1.7e-07  Score=100.41  Aligned_cols=40  Identities=28%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||||+|||++|+.+++.+  .|.+|+|+||....+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g--~g~~V~lleK~~~~~   42 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEAN--PNLKIALISKVYPMR   42 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCCCC
Confidence            4689999999999999999999752  258999999987654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.70  E-value=8.2e-08  Score=99.28  Aligned_cols=60  Identities=22%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             ehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeC---CCc--EEEeeE-EEe
Q 010225          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKL-VGA  242 (514)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~g~--~~~ad~-V~A  242 (514)
                      .-..+...|.+.+++.+ ++|+++++++++..                   +.+..+.+...   +|+  ++.|+. |.|
T Consensus       139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~-------------------e~g~V~Gv~~~~~~~g~~~~i~A~aVIlA  198 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLIT-------------------EDGRVTGVVAENPADGEFVRIKAKAVILA  198 (417)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEE-------------------ETTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred             cHHHHHHHHHHHHhhcC-eeeeccceeeeEEE-------------------eCCceeEEEEEECCCCeEEEEeeeEEEec
Confidence            45778999999999998 99999999999987                   12233444443   455  588999 999


Q ss_pred             cCCCch
Q 010225          243 DGGKSR  248 (514)
Q Consensus       243 dG~~S~  248 (514)
                      +|..+.
T Consensus       199 tGG~~~  204 (417)
T PF00890_consen  199 TGGFGG  204 (417)
T ss_dssp             ---BGG
T ss_pred             cCcccc
Confidence            999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.70  E-value=3.3e-07  Score=98.05  Aligned_cols=41  Identities=34%  Similarity=0.464  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      .++||+|||||+|||++|+.+++.+  .|.+|+|+||....+.
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g--~g~~V~lveK~~~~~~   42 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEAN--PHLDVALISKVYPMRS   42 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCCCCC
Confidence            3589999999999999999999742  2689999999986543

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.68  E-value=5.8e-06  Score=86.49  Aligned_cols=69  Identities=20%  Similarity=0.241  Sum_probs=49.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCce----EEeChhhHHHHHHcCCcHH
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGAWQY  129 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl~~~  129 (514)
                      +|+|||||++||++|+.|++.    |++|+|+|+.+.++...+...  .+.....|    ....++..++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA----GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            589999999999999999996    999999999998765443211  11111112    1224778899999997543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.68  E-value=1.9e-07  Score=99.74  Aligned_cols=113  Identities=17%  Similarity=0.279  Sum_probs=76.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..|||+||||||||+++|+.|++.    |++|+|||++...               |......                 
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~----g~~V~liE~~~~G---------------G~~~~~~-----------------   46 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA----KLDTLIIEKDDFG---------------GQITITS-----------------   46 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCC---------------ceEEecc-----------------
Confidence            459999999999999999999996    9999999986421               1100000                 


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         .+     .+..+.                ..+....+...+.+.+++.+ ++++ +++|+++..             
T Consensus        47 ---~i-----~~~pg~----------------~~~~~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~-------------   87 (555)
T TIGR03143        47 ---EV-----VNYPGI----------------LNTTGPELMQEMRQQAQDFG-VKFL-QAEVLDVDF-------------   87 (555)
T ss_pred             ---cc-----ccCCCC----------------cCCCHHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe-------------
Confidence               00     000000                01234567778888888777 8875 668888875             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             .+....|...++ .+.++. |.|+|.+...
T Consensus        88 -------~~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        88 -------DGDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             -------cCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence                   234456666555 589999 9999997644

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=2.4e-07  Score=99.54  Aligned_cols=41  Identities=32%  Similarity=0.541  Sum_probs=35.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCC---cEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g---~~V~viE~~~~~~~   96 (514)
                      ...++||+|||||+|||++|+.+++.    |   .+|+|+||....+.
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~----G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAER----SGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHh----CCCCCcEEEEEcccCCCC
Confidence            34568999999999999999999996    7   89999999986543

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.67  E-value=2.1e-07  Score=100.27  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=35.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||||.|||++|+.+++.    |.+|+|+||....+
T Consensus        27 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~lveK~~~~~   65 (617)
T PTZ00139         27 DHTYDAVVVGAGGAGLRAALGLVEL----GYKTACISKLFPTR   65 (617)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHc----CCcEEEEeccCCCC
Confidence            3578999999999999999999996    99999999987654

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.67  E-value=1.4e-07  Score=97.63  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||+|.|||++|+.+++     |.+|+||||.+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~-----G~~V~lleK~~~~g   39 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRK-----DLKILMVSKGKLNE   39 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhcc-----CCCEEEEecCCCCC
Confidence            56899999999999999999853     89999999988653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.65  E-value=2.5e-07  Score=99.30  Aligned_cols=35  Identities=31%  Similarity=0.462  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ||+|||||++|+++|+.+++.    |.+|+||||....+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~----G~~V~lleK~~~~~   35 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA----GLNTAVISKVYPTR   35 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence            899999999999999999996    99999999987643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.63  E-value=4.4e-07  Score=95.30  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=36.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      +.+||||||||+.||++|+.|+|+    |++|+|+||+..++.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~----G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARA----GLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhC----CCEEEEEEecCCCCc
Confidence            468999999999999999999997    999999999998864

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.63  E-value=2.1e-07  Score=82.19  Aligned_cols=142  Identities=15%  Similarity=0.175  Sum_probs=76.7

Q ss_pred             EEECCCHHHHHHHHHhccCC-CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhccC
Q 010225           59 AVVGGGMVGMALACSLASMP-LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY  137 (514)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~-~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~  137 (514)
                      +||||||+|++++..|.+.. .....+|+|||+.+......+. ..   ......++-                     +
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~-~~---~~~~~llN~---------------------~   55 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYR-PD---QPPSHLLNT---------------------P   55 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCC-CC---CChHHhhcc---------------------c
Confidence            69999999999999999872 2346899999996542111110 00   000111110                     1


Q ss_pred             cceEEEEeCCC-cceeeeccC----CCCCcccEEEEehHHHHHHHHHHHhcC-----CCceEE-cCCeeEEEeeCCCCCC
Q 010225          138 FDKMQVWDYTG-LGYTKYNAR----DVNKEILGCVVENKVLHSSLLSCMQNT-----EFQKTI-YPSRLTSMALLPSSSS  206 (514)
Q Consensus       138 ~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~-----g~v~v~-~~~~v~~v~~~~~~~~  206 (514)
                      ...+.++..+. .....+-..    +.......-.++|..+-.+|.+.+.+.     .+++|. ...+|+++..      
T Consensus        56 a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~------  129 (156)
T PF13454_consen   56 ADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR------  129 (156)
T ss_pred             ccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE------
Confidence            11111111110 000000000    001111223467877777776554432     112322 3568999987      


Q ss_pred             cccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                                    .+++..|.+.+|..+.+|. |.|+|.
T Consensus       130 --------------~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  130 --------------DDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             --------------cCCcEEEEECCCCEEEeCEEEECCCC
Confidence                          4466788889999999999 999995

>PLN02676 polyamine oxidase

Probab=98.63  E-value=5.5e-06  Score=86.98  Aligned_cols=42  Identities=24%  Similarity=0.459  Sum_probs=36.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSN   98 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~~   98 (514)
                      ...+||+|||||++||++|+.|++.    |+ +|+|+|++..++...
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~----g~~~v~vlE~~~~~GG~~   66 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEA----GIEDILILEATDRIGGRM   66 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHc----CCCcEEEecCCCCCCCcc
Confidence            3467999999999999999999996    87 699999999876543

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.63  E-value=2.3e-07  Score=99.53  Aligned_cols=40  Identities=28%  Similarity=0.494  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||||+|||++|+.+++.+  .|.+|+|+||....+
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~V~vleK~~~~g   41 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLD--PSLDVAVVAKTHPIR   41 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhc--CCCcEEEEeccCCCc
Confidence            4579999999999999999999752  258999999987654

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.63  E-value=1.5e-07  Score=98.47  Aligned_cols=59  Identities=24%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+.+.|.+.+++.+ ++++++ .++.+..                   +++..+.+.. ++..+.++. |.|+|.+|.+
T Consensus       120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~-------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        120 KHIIKILYKHARELG-VNFIRG-FAEELAI-------------------KNGKAYGVFL-DGELLKFDATVIATGGFSGL  177 (466)
T ss_pred             HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe-------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence            568888999998876 898876 7888865                   1223334544 566799999 9999999987


Q ss_pred             hh
Q 010225          250 RE  251 (514)
Q Consensus       250 R~  251 (514)
                      ..
T Consensus       178 ~~  179 (466)
T PRK08401        178 FK  179 (466)
T ss_pred             CC
Confidence            53

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.63  E-value=1.6e-07  Score=87.27  Aligned_cols=176  Identities=14%  Similarity=0.156  Sum_probs=93.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCC-CCC-cEEEEEcCCCCCCCCCCCCCCCC-CCCc---eEEeChhhHHHHHHcCCcH
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPL-TKH-LSVAIIDSNPALGKSNFIKKEDP-PDPR---VSTVTPATISFFKEIGAWQ  128 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~-~~g-~~V~viE~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~l~~lgl~~  128 (514)
                      ..+|+|||||+.|.++||.|++++- ++| +.|+|||+....+..+-...... ....   ...|.+-+.++.+.  |.+
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~--Lsd   87 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEE--LSD   87 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHH--HHH
Confidence            4789999999999999999999831 122 78999999987653321000000 0000   01222223333222  222


Q ss_pred             HHHhhhccCcceEEEEe------CCCcceee----eccC-------CCCCcccEEEEehHHHHHHHHHHHhcCCCceEEc
Q 010225          129 YVQQHRHAYFDKMQVWD------YTGLGYTK----YNAR-------DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIY  191 (514)
Q Consensus       129 ~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~-------~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~  191 (514)
                      ++.......+..+.-|.      .......+    +-..       .++......+++...|.+.+++.+++.++|++.+
T Consensus        88 eydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~  167 (380)
T KOG2852|consen   88 EYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVF  167 (380)
T ss_pred             hhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence            33222111222222221      11111100    0000       1122233367999999999999999999999999


Q ss_pred             CCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          192 PSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       192 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      | +|.++.. |....+++...+..              ......+.+. |.+.|.|+.
T Consensus       168 G-kv~ev~d-Ek~r~n~v~~ae~~--------------~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  168 G-KVKEVSD-EKHRINSVPKAEAE--------------DTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             e-eeEEeec-ccccccccchhhhc--------------CceEEeeeeEEEEecCCCch
Confidence            9 6888852 22222222111100              0123467788 999999975

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.62  E-value=3.1e-07  Score=95.68  Aligned_cols=34  Identities=32%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|||+||||||+|+++|+.+++.    |++|+|+|++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~   35 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH----GAKVAIAEEPR   35 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCc
Confidence            58999999999999999999996    99999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.62  E-value=2.2e-06  Score=88.22  Aligned_cols=70  Identities=19%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      -.++...+++.|...+++.| +.|+.++.|++|..                   ..++.+.|.+.-|. ++|.. |+|+|
T Consensus       182 G~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G~-iet~~~VNaaG  240 (856)
T KOG2844|consen  182 GVMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHGS-IETECVVNAAG  240 (856)
T ss_pred             cccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCcc-eecceEEechh
Confidence            35789999999999999999 99999999999976                   12344577777776 99999 99999


Q ss_pred             CCchhhh-hhCCC
Q 010225          245 GKSRVRE-LAGFK  256 (514)
Q Consensus       245 ~~S~vR~-~l~~~  256 (514)
                      .|.+--. +.+.+
T Consensus       241 vWAr~Vg~m~gvk  253 (856)
T KOG2844|consen  241 VWAREVGAMAGVK  253 (856)
T ss_pred             HHHHHhhhhcCCc
Confidence            9985433 33533

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=6.1e-07  Score=95.99  Aligned_cols=38  Identities=34%  Similarity=0.532  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+||+|||+|.||+++|+.+++.    |.+|+|+||.+..+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~----G~~V~lveK~~~~~   41 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA----GFKVAVISKVFPTR   41 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence            568999999999999999999996    99999999987543

>PLN02487 zeta-carotene desaturase

Probab=98.60  E-value=1.3e-05  Score=85.12  Aligned_cols=74  Identities=23%  Similarity=0.296  Sum_probs=51.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCceE----EeChhhHHHHHHcCCc
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVS----TVTPATISFFKEIGAW  127 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~--~~~~~~~~~~~~----~l~~~~~~~l~~lgl~  127 (514)
                      +..+|+|||||++||++|+.|++.    |++|+|+|+.+.++....  ..........|.    ...++..++++++|+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~----g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~  149 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD  149 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC----CCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc
Confidence            346999999999999999999996    999999999998753211  001111111121    2246788889999987


Q ss_pred             HHHH
Q 010225          128 QYVQ  131 (514)
Q Consensus       128 ~~~~  131 (514)
                      +++.
T Consensus       150 ~~~~  153 (569)
T PLN02487        150 ENLL  153 (569)
T ss_pred             cccc
Confidence            6543

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.60  E-value=2.2e-07  Score=99.99  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||||+|||++|+.+++.+  .|.+|+||||....+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~--~G~~V~lieK~~~~~   49 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWA--PDLKVLIVEKANIKR   49 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEECCCcCC
Confidence            4689999999999999999999831  179999999988643

>PRK14694 putative mercuric reductase; Provisional

Probab=98.59  E-value=4.3e-07  Score=95.24  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +....|||+||||||+|+++|+.|+++    |++|+|||++.
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~----g~~v~lie~~~   39 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATER----GARVTLIERGT   39 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEEccc
Confidence            445789999999999999999999997    99999999874

>PLN02976 amine oxidase

Probab=98.59  E-value=8.1e-06  Score=92.16  Aligned_cols=59  Identities=17%  Similarity=0.192  Sum_probs=43.3

Q ss_pred             cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc-chHHHHHHHHHHhhHH
Q 010225          392 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI-GEASLLKKYEAERKPA  453 (514)
Q Consensus       392 ~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~-~~~~~l~~Y~~~r~~~  453 (514)
                      .+++++.|+|.+.-.|-   =+.-|++++...|+.|...+..+.++ ....+++.+++.....
T Consensus      1150 ggRLFFAGEATS~~~pG---TVHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~ 1209 (1713)
T PLN02976       1150 ENCLFFAGEATCKEHPD---TVGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESE 1209 (1713)
T ss_pred             CCcEEEEehhhhCCCcc---hHHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhh
Confidence            46799999997765553   45668999999999999988877553 3467777776654433

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.56  E-value=3.2e-06  Score=88.59  Aligned_cols=59  Identities=12%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC--cEEEeeE-EEecCCCc
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKL-VGADGGKS  247 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~-V~AdG~~S  247 (514)
                      ..+...+.+.+++.+ ++++++++|++++.                    .++.+.+.+.+|  .++.+|. |.|.|..+
T Consensus       211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence            456677778888877 99999999999975                    334566766667  4799999 99999887


Q ss_pred             hhh
Q 010225          248 RVR  250 (514)
Q Consensus       248 ~vR  250 (514)
                      .+.
T Consensus       270 ~~~  272 (461)
T TIGR01350       270 NTE  272 (461)
T ss_pred             cCC
Confidence            654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.56  E-value=5.8e-07  Score=94.39  Aligned_cols=36  Identities=25%  Similarity=0.546  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|||+||||||+|+++|..|++.    |++|+|+|++.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~   37 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL----GLKTALVEKGK   37 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence            3579999999999999999999997    99999999864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.56  E-value=2.4e-07  Score=97.09  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..|||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~----G~~v~liE~~~~~   40 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKL----GKRVAVIERYRNV   40 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCEEEEEeccccc
Confidence            4569999999999999999999997    9999999997655

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=4.3e-07  Score=98.26  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .++||+|||||.|||++|+.+++.    |.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~----G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGEL----GYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence            468999999999999999999996    9999999997655

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.55  E-value=9.2e-07  Score=94.49  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++||+|||+|.+||++|+.+++.    |.+|+||||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~----G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADA----GKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            578999999999999999999997    99999999998

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.55  E-value=1.1e-06  Score=94.47  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...+||+|||||+|||++|+.+++.    |.+|+||||....+
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~vleK~~~~~   48 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARA----GLSVAVLSKVFPTR   48 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence            4568999999999999999999996    99999999986543

>PRK08275 putative oxidoreductase; Provisional

Probab=98.54  E-value=9.1e-07  Score=94.59  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||+|||||+||+++|+.+++.+  .|.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERN--PALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence            5689999999999999999999742  26899999999864

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.54  E-value=7.7e-07  Score=95.06  Aligned_cols=39  Identities=36%  Similarity=0.581  Sum_probs=35.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+.++||+|||+|++|+++|+.+++.    |.+|+||||.+..
T Consensus         4 ~~~~~DvvVvG~G~aG~~aA~~aa~~----G~~v~llEk~~~~   42 (557)
T PRK07843          4 TVQEYDVVVVGSGAAGMVAALTAAHR----GLSTVVVEKAPHY   42 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence            44579999999999999999999997    9999999998765

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.53  E-value=5.7e-07  Score=96.57  Aligned_cols=41  Identities=29%  Similarity=0.579  Sum_probs=36.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+.++||||||+|++|+++|+.+++.    |.+|+|+||....+
T Consensus         5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~----G~~v~llEk~~~~g   45 (574)
T PRK12842          5 TNELTCDVLVIGSGAGGLSAAITARKL----GLDVVVLEKEPVFG   45 (574)
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Confidence            345679999999999999999999996    99999999998764

>PRK12839 hypothetical protein; Provisional

Probab=98.53  E-value=1.4e-06  Score=93.19  Aligned_cols=41  Identities=29%  Similarity=0.445  Sum_probs=36.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +.+..+||+|||+|++|+++|+.|++.    |.+|+||||....+
T Consensus         4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g   44 (572)
T PRK12839          4 SMTHTYDVVVVGSGAGGLSAAVAAAYG----GAKVLVVEKASTCG   44 (572)
T ss_pred             CcCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            345679999999999999999999996    99999999987654

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.52  E-value=8e-07  Score=95.37  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||+|.|||++|+.+++.    |.+|+|+||....+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lleK~~~~~   43 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQS----GQSCALLSKVFPTR   43 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            368999999999999999999996    99999999987653

>PRK09897 hypothetical protein; Provisional

Probab=98.51  E-value=2.2e-07  Score=97.45  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ++|+||||||+|+++|..|.+..  ..++|+|||+...++
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~--~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQ--TPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcC--CCCcEEEEecCCCCC
Confidence            47999999999999999998752  357899999987664

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=1.3e-06  Score=93.92  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||||+||+++|+.+++     +.+|+|+||....+
T Consensus         3 ~~~~DVlVIG~G~AGl~AAl~aa~-----~~~VilleK~~~~~   40 (583)
T PRK08205          3 QHRYDVVIVGAGGAGMRAAIEAGP-----RARTAVLTKLYPTR   40 (583)
T ss_pred             ceeccEEEECccHHHHHHHHHHHh-----CCCEEEEeCCCCCC
Confidence            356899999999999999999987     48999999987543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.51  E-value=9.4e-07  Score=89.64  Aligned_cols=124  Identities=15%  Similarity=0.146  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .||+|||||++|+.+|+.|++.    |++|+|||+++.......  ............+..+..+++..|++..-..   
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~----G~~V~LiE~rp~~~~p~~--~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~---   71 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA----GVPVILYEMRPEKLTPAH--HTEDLAELVCSNSLGAKALDRAAGLLKTEMR---   71 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCcEEEEeccccccCchh--hhhhhhhhcccccccchhHHhccCcHHHHHh---
Confidence            4799999999999999999996    999999998876422100  0000001112233444566677776653222   


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA  199 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~  199 (514)
                       ......+...+.. .+        .....+.++|..+.+.+.+.+++.+++++. ..+|+++.
T Consensus        72 -~lg~l~~~~ad~~-~I--------pagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~  124 (433)
T TIGR00137        72 -QLSSLIITAADRH-AV--------PAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIP  124 (433)
T ss_pred             -hcCeeeeehhhhh-CC--------CCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEc
Confidence             1111111111110 00        111245789999999999999988877766 44666663

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.51  E-value=8.3e-07  Score=92.45  Aligned_cols=35  Identities=31%  Similarity=0.555  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|||+||||||+|+++|+.|++.    |++|+|||+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~----g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA----GWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC----CCeEEEEcCCC
Confidence            469999999999999999999996    99999999975

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.51  E-value=1.2e-06  Score=93.13  Aligned_cols=40  Identities=38%  Similarity=0.505  Sum_probs=34.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+.++||+|||+|.||+++|+.+++     |.+|+|+||.+..+
T Consensus         5 ~~~~e~DVlVVG~G~AGl~AAi~A~~-----G~~V~lieK~~~~g   44 (553)
T PRK07395          5 ILPSQFDVLVVGSGAAGLYAALCLPS-----HLRVGLITKDTLKT   44 (553)
T ss_pred             cccccCCEEEECccHHHHHHHHHhhc-----CCCEEEEEccCCCC
Confidence            34567899999999999999999864     89999999987653

>PLN02815 L-aspartate oxidase

Probab=98.51  E-value=2.1e-06  Score=91.81  Aligned_cols=39  Identities=28%  Similarity=0.501  Sum_probs=34.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||+|||+|.|||++|+.+++.    | +|+|+||....+
T Consensus        26 ~~~~~DVlVVG~G~AGl~AAl~Aae~----G-~VvlleK~~~~g   64 (594)
T PLN02815         26 STKYFDFLVIGSGIAGLRYALEVAEY----G-TVAIITKDEPHE   64 (594)
T ss_pred             cccccCEEEECccHHHHHHHHHHhhC----C-CEEEEECCCCCC
Confidence            34568999999999999999999996    8 899999998754

>PRK06116 glutathione reductase; Validated

Probab=98.50  E-value=5.4e-07  Score=94.09  Aligned_cols=35  Identities=37%  Similarity=0.569  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|||+||||||+|+++|+.|++.    |++|+|||+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~----G~~V~liE~~~   37 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY----GAKVALIEAKR   37 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccc
Confidence            469999999999999999999996    99999999863

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.50  E-value=1.1e-06  Score=92.05  Aligned_cols=35  Identities=37%  Similarity=0.535  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|||+||||||+|+++|..|++.    |++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~----G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL----GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC----CCcEEEEeccc
Confidence            469999999999999999999996    99999999876

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.50  E-value=1.3e-06  Score=67.67  Aligned_cols=34  Identities=38%  Similarity=0.694  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL----GKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----TSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHh----CcEEEEEeccchh
Confidence            489999999999999999997    9999999999966

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.50  E-value=7.1e-07  Score=94.95  Aligned_cols=38  Identities=37%  Similarity=0.641  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +.++||+|||+|+|||++|+.+++     +.+|+|+||....+
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~~~VilveK~~~~~   43 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE-----HRRVAVLSKGPLSE   43 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH-----CCCEEEEeccCCCC
Confidence            456899999999999999999987     47999999988653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.49  E-value=7.2e-05  Score=81.80  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN   98 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~   98 (514)
                      ....+|+|||||++|+++|+.|++.    |++|+|+|++..++.+.
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSM----GFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeccccCCCcc
Confidence            3567999999999999999999996    99999999998886553

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=2.1e-06  Score=91.64  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .++||+|||||.||+++|+.+ +.    |.+|+|+||...
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~----G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ER----GKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hc----CCCEEEEEccCC
Confidence            468999999999999999999 75    999999999864

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=9.8e-07  Score=92.48  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|||+||||||+|+++|..|++.    |++|+|||+++.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~~~   39 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL----GLETVCVERYSTL   39 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCcc
Confidence            469999999999999999999996    9999999997644

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=7.3e-07  Score=95.94  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||||+|||++|+.+++.    |.+|+|+||....+
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~----G~~V~lveK~~~~~   48 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA----GLKTACITKVFPTR   48 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            468999999999999999999996    89999999987543

>PRK06370 mercuric reductase; Validated

Probab=98.47  E-value=5.3e-07  Score=94.49  Aligned_cols=37  Identities=32%  Similarity=0.565  Sum_probs=33.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++.+|||+||||||+|+++|+.|++.    |++|+|||+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGL----GMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence            44569999999999999999999997    99999999875

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.47  E-value=2.1e-06  Score=90.79  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ++||+|||+|.|||++|+.+++     |.+|+|+||.+..+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-----g~~V~lveK~~~~~   38 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-----EYNVIIITKKTKRN   38 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-----CCCEEEEeccCCCC
Confidence            6799999999999999999976     78999999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=98.46  E-value=1.6e-06  Score=86.24  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=32.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+..+||+||||||+|+++|..|++.    |++|+|||+..
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~----g~~~~~ie~~~   39 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME   39 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHC----CCCeEEEEeec
Confidence            34678999999999999999999996    89999999653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.45  E-value=1.3e-06  Score=92.52  Aligned_cols=38  Identities=39%  Similarity=0.576  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +.++||||||+| +|+++|+.+++.    |.+|+||||.+..+
T Consensus         5 d~~~DVvVVG~G-aGl~aA~~aa~~----G~~V~vlEk~~~~G   42 (513)
T PRK12837          5 DEEVDVLVAGSG-GGVAGAYTAARE----GLSVALVEATDKFG   42 (513)
T ss_pred             CCccCEEEECch-HHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            357899999999 999999999996    99999999998654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.45  E-value=6.3e-07  Score=96.91  Aligned_cols=39  Identities=28%  Similarity=0.352  Sum_probs=34.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||||+||+++|+.+++.    |.+|+||||....+
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~----G~~V~lieK~~~~~   44 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARER----GLRVAVVCKSLFGK   44 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHC----CCCEEEEeccCCCC
Confidence            3568999999999999999999996    99999999987553

>PLN02507 glutathione reductase

Probab=98.45  E-value=1.2e-06  Score=92.46  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      ..+|||+||||||+|+.+|..|+++    |.+|+|||+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~----G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF----GAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence            4469999999999999999999997    999999997

>PTZ00058 glutathione reductase; Provisional

Probab=98.44  E-value=7.2e-07  Score=94.67  Aligned_cols=39  Identities=33%  Similarity=0.465  Sum_probs=34.7

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++...+|||+||||||+|.++|..+++.    |.+|+|||++.
T Consensus        43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~----G~~ValIEk~~   81 (561)
T PTZ00058         43 KKPRMVYDLIVIGGGSGGMAAARRAARN----KAKVALVEKDY   81 (561)
T ss_pred             cCCCccccEEEECcCHHHHHHHHHHHHc----CCeEEEEeccc
Confidence            3344689999999999999999999997    99999999874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.44  E-value=2.1e-06  Score=89.93  Aligned_cols=37  Identities=32%  Similarity=0.572  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|||+||||||+|+++|..+++.    |++|+|||++..+
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~----G~~V~liE~~~~~   38 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL----GLKVACVEGRSTL   38 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCce
Confidence            359999999999999999999996    9999999985544

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.43  E-value=1.5e-06  Score=90.52  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|||+||||||+|+++|+.|++.    |++|+|+|++.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH----GAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEecccc
Confidence            469999999999999999999996    99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.42  E-value=9.4e-07  Score=94.92  Aligned_cols=40  Identities=33%  Similarity=0.584  Sum_probs=35.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||+|||+|++|+++|+.+++.    |.+|+||||.+..+
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g   48 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWH----GLKVIVVEKDPVFG   48 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCC
Confidence            34578999999999999999999996    99999999987653

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.42  E-value=2.3e-06  Score=88.85  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeC-CCcEEEeeE-EEecCCCch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~ad~-V~AdG~~S~  248 (514)
                      ..+...|.+.+++.+ ++|+++++|+++..+         .+        .+..+.|... ++.++.|+. |.|+|..+.
T Consensus       123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~~---------~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLG-VEIRYGIAVDRIPPE---------AF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCEEEEEEec---------CC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            568889999999887 999999999999761         00        1123334443 335799999 999998887


Q ss_pred             hhhhh
Q 010225          249 VRELA  253 (514)
Q Consensus       249 vR~~l  253 (514)
                      .+.++
T Consensus       185 n~~~~  189 (432)
T TIGR02485       185 NRDWL  189 (432)
T ss_pred             CHHHH
Confidence            55443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.40  E-value=2.3e-06  Score=88.98  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++|||+||||||+|+++|..|++.    |++|+||||++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~----g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA----GKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC----CCEEEEEecCCc
Confidence            469999999999999999999996    999999999863

>PRK13748 putative mercuric reductase; Provisional

Probab=98.40  E-value=2.3e-06  Score=92.01  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|||+||||||+|+++|..|+++    |++|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~----G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ----GARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence            469999999999999999999997    99999999873

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.39  E-value=3.5e-06  Score=89.13  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..++||+|||+|.|||++|+.++.      .+|+|+||.+.
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa~------~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLAP------RPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhCc------CCEEEEECCCC
Confidence            457899999999999999999964      48999999986

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.39  E-value=3.6e-07  Score=68.07  Aligned_cols=32  Identities=34%  Similarity=0.627  Sum_probs=29.3

Q ss_pred             EECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           60 VVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        60 IVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      |||||++||++|+.|++.    |++|+|+|+.+.++
T Consensus         1 IiGaG~sGl~aA~~L~~~----g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA----GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT----TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC----CCcEEEEecCcccC
Confidence            899999999999999996    99999999999874

...

>PLN02529 lysine-specific histone demethylase 1

Probab=98.38  E-value=8.7e-05  Score=80.73  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=36.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..+.||+|||||++|+++|..|++.    |++|+|+|+++.++..
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSF----GFKVVVLEGRNRPGGR  198 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHc----CCcEEEEecCccCcCc
Confidence            3567999999999999999999996    9999999998876543

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.37  E-value=3.3e-06  Score=90.77  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.||+|||+|+|||++|+.+++.    |.+|+|+||.+..+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lieK~~~~~   39 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEA----GVHVDLFSLVPVKR   39 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            356999999999999999999996    99999999988653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.37  E-value=3.7e-06  Score=88.35  Aligned_cols=33  Identities=39%  Similarity=0.574  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      ..|||+||||||+|+++|+.|++.    |.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~----g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL----GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC----CCeEEEEec
Confidence            469999999999999999999997    999999998

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.36  E-value=2.4e-06  Score=92.70  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=35.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...+||+|||||.|||++|+.+++.    |.+|+|+||.+..+
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~----G~~VivleK~~~~~   41 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQR----GLDTIVLSLVPAKR   41 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHc----CCCEEEEeCCCCCC
Confidence            3568999999999999999999996    99999999987654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.36  E-value=6e-07  Score=82.74  Aligned_cols=33  Identities=39%  Similarity=0.663  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ||+|||||++|+++|..|++.    +++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~----~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP----GAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----TSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcC----CCeEEEEecccc
Confidence            799999999999999999985    999999988763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.36  E-value=3.2e-06  Score=84.30  Aligned_cols=43  Identities=26%  Similarity=0.497  Sum_probs=39.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~   99 (514)
                      .+..||||||||.+||++|+.|.++    |++|+|+|.++..+.+.+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka----G~~v~ilEar~r~GGR~~   47 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA----GYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc----CcEEEEEeccCCcCceeE
Confidence            4578999999999999999999998    999999999998876655

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.35  E-value=8.2e-06  Score=84.04  Aligned_cols=43  Identities=33%  Similarity=0.440  Sum_probs=38.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~   99 (514)
                      +..+||+|||+|.+|+.+|..|++.    |.+|+++|+++..+...+
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~----GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVN----GKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhC----CCEEEEecCCCCcCcccc
Confidence            4679999999999999999999997    999999999998875543

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.34  E-value=1.1e-05  Score=86.08  Aligned_cols=39  Identities=38%  Similarity=0.591  Sum_probs=34.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||||||+| +|+++|+.+++.    |.+|+||||.+..+
T Consensus        13 ~d~e~DvvvvG~G-~G~~aA~~a~~~----G~~v~v~Ek~~~~G   51 (564)
T PRK12845         13 RDTTVDLLVVGSG-TGMAAALAAHEL----GLSVLIVEKSSYVG   51 (564)
T ss_pred             CCceeCEEEECCc-HHHHHHHHHHHC----CCcEEEEecCCCCc
Confidence            3458999999999 899999999997    99999999987664

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.33  E-value=7.3e-06  Score=85.62  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..+.+|+|||||++||++|+.|++.+-.+|.+|+|+|+.+.++.+
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~   64 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS   64 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence            345799999999999999999998532237899999999987644

>PLN03000 amine oxidase

Probab=98.31  E-value=9.5e-05  Score=80.99  Aligned_cols=42  Identities=24%  Similarity=0.481  Sum_probs=37.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~   99 (514)
                      ...+|+|||||++||++|..|++.    |++|+|+|+++.++...+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~----G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF----GFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEEccCcCCCCcc
Confidence            458999999999999999999996    999999999998875543

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.31  E-value=3.3e-06  Score=90.61  Aligned_cols=41  Identities=32%  Similarity=0.444  Sum_probs=36.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ...++||||||+|++|+++|+.+++.    |.+|+||||.+..+.
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~----G~~VivlEk~~~~gG   48 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAAR----GLDTLVVEKSAHFGG   48 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEcCCCCCc
Confidence            34578999999999999999999996    999999999987643

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.31  E-value=5.1e-06  Score=88.75  Aligned_cols=39  Identities=38%  Similarity=0.575  Sum_probs=35.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||+|++|+++|+.|++.    |.+|+||||....+
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~----G~~v~liEk~~~~g   42 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADS----GLEPLIVEKQDKVG   42 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            3578999999999999999999996    99999999987653

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.29  E-value=7.4e-06  Score=88.21  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      |+|||+|+|||++|+.+++.    |.+|+|+||.+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~----G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL----GYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc----CCCEEEEEecCCC
Confidence            79999999999999999996    9999999998844

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PLN02546 glutathione reductase

Probab=98.28  E-value=3.3e-06  Score=89.68  Aligned_cols=33  Identities=18%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      .+|||+||||||+|..+|..|++.    |.+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF----GASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence            459999999999999999999996    999999996

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.28  E-value=6.8e-06  Score=88.25  Aligned_cols=40  Identities=33%  Similarity=0.514  Sum_probs=35.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||+|||+|++|+++|+.+++.    |.+|+||||....+
T Consensus        13 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~l~ek~~~~g   52 (578)
T PRK12843         13 WDAEFDVIVIGAGAAGMSAALFAAIA----GLKVLLVERTEYVG   52 (578)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            34578999999999999999999996    99999999987654

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.27  E-value=9.3e-06  Score=81.68  Aligned_cols=158  Identities=17%  Similarity=0.213  Sum_probs=88.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeCh-hh-----HHHHHH-cCC---
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-AT-----ISFFKE-IGA---  126 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-----~~~l~~-lgl---  126 (514)
                      ||+|||+|+|||++|+.|++     .++|+|+-|.+.....+. +.+   .+-...+.+ .+     .+.|.. -|+   
T Consensus         9 dV~IiGsG~AGL~~AL~L~~-----~~~V~vltk~~~~~~sS~-~AQ---GGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~   79 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP-----SFRVTVLTKGPLGESSSY-WAQ---GGIAAALSEDDSPELHVADTLAAGAGLCDE   79 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC-----CCcEEEEeCCCCCCccch-hhc---CceEeeeCCCCCHHHHHHHHHHhcCCCCcH
Confidence            89999999999999999999     489999999986642221 111   111112221 10     111110 011   


Q ss_pred             -------------cHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEE---EehHHHHHHHHHHHhcCCCceEE
Q 010225          127 -------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV---VENKVLHSSLLSCMQNTEFQKTI  190 (514)
Q Consensus       127 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~v~v~  190 (514)
                                   .+.+...++ ++      +.+......+..........-..   -.-..+...|.+.+++.++++|+
T Consensus        80 ~aV~~iv~~~~~ai~~Li~~Gv-~F------Dr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~  152 (518)
T COG0029          80 EAVEFIVSEAPEAIEWLIDLGV-PF------DRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVL  152 (518)
T ss_pred             HHHHHHHHhHHHHHHHHHHcCC-CC------cCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEE
Confidence                         222222222 22      11111111111110001110000   12367889999999998889999


Q ss_pred             cCCeeEEEeeCCCCCCcccCCCCccccccccCC-ee-EEEe--CCC--cEEEeeE-EEecCCCchhh
Q 010225          191 YPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LA-KLDL--SDG--TSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       191 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~--~~g--~~~~ad~-V~AdG~~S~vR  250 (514)
                      .++.+.++..                    +++ .+ .|..  .++  .++.++. |.|+|.-+.+=
T Consensus       153 e~~~a~~li~--------------------~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly  199 (518)
T COG0029         153 EGAEALDLII--------------------EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY  199 (518)
T ss_pred             ecchhhhhhh--------------------cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence            9999999976                    222 33 3333  323  4688999 99999987763

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.26  E-value=1.5e-05  Score=92.19  Aligned_cols=39  Identities=33%  Similarity=0.475  Sum_probs=35.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +.++||||||+|.||+++|+.+++.    |.+|+|+||.+..+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~----Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASC----GAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence            4568999999999999999999996    99999999988654

>PRK14727 putative mercuric reductase; Provisional

Probab=98.25  E-value=5.9e-06  Score=86.90  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.++||+||||||+|+++|..|+++    |.+|+|+|+++.+
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~~----g~~v~~ie~~~~~   51 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAEH----GARVTIIEGADVI   51 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCcc
Confidence            3579999999999999999999997    9999999998655

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.23  E-value=5.2e-06  Score=86.60  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|+|||||++|+++|..|++.+  .+.+|+|||+++..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~--~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLN--KELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHC--CCCcEEEEECCCcc
Confidence            6999999999999999999862  24699999998854

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.21  E-value=0.00011  Score=73.41  Aligned_cols=58  Identities=12%  Similarity=0.249  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      ..+..-+.+.++++| ++++|+++|.+++.                   .++....|...+|.++.+|. |.|-|..+.
T Consensus       173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            567778899999998 99999999999987                   12235678888999999999 999998764

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.21  E-value=3.6e-05  Score=72.27  Aligned_cols=44  Identities=18%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCC---CCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPL---TKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~---~~g~~V~viE~~~~~~~~   97 (514)
                      +..+|+|||+|+.||++|+.+.+...   ..-.+|+|++-+......
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~   48 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT   48 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence            35689999999999999988777411   123689999988766433

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.19  E-value=1.1e-05  Score=91.75  Aligned_cols=38  Identities=37%  Similarity=0.551  Sum_probs=34.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+||+||||||||+++|+.|++.    |++|+|+|+.+.++
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~----G~~V~liD~~~~~G  199 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARA----GARVILVDEQPEAG  199 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCC
Confidence            358999999999999999999996    99999999988764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.19  E-value=7.8e-06  Score=77.12  Aligned_cols=182  Identities=16%  Similarity=0.116  Sum_probs=103.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhcc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHH---------H
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF---------F  121 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------l  121 (514)
                      ...+||+||||||++||+.|..|.- +   .+.+|.|+|+....+...... +......|+...|.++++         +
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la~hqSgh-NSgViHaGIYY~P~SLKAklCV~G~~Ll  120 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLAVHQSGH-NSGVIHAGIYYKPGSLKAKLCVEGRELL  120 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhceeeccc-ccceeeeeeeeCCcccchhhhhccHHHH
Confidence            3467999999999999999998764 4   389999999998775322110 111122344444554432         1


Q ss_pred             ----HHcCC-------------------cHHHHhhh-ccCcceEEEEeCCCcceeeeccC--CCCCcccEEEEehHHHHH
Q 010225          122 ----KEIGA-------------------WQYVQQHR-HAYFDKMQVWDYTGLGYTKYNAR--DVNKEILGCVVENKVLHS  175 (514)
Q Consensus       122 ----~~lgl-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~  175 (514)
                          ++-++                   .+.+.+.+ .+.+..+++.++......+-...  ..-..+..-.++-..+..
T Consensus       121 Y~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~l  200 (453)
T KOG2665|consen  121 YEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTL  200 (453)
T ss_pred             HHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHH
Confidence                11111                   11222211 12233444443332221110000  000111123567788888


Q ss_pred             HHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       176 ~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                      .+.+..+..+ .++..+-++..+.+         .++.      .-+-.++|.-..++++++++ |.|.|..|.--..+
T Consensus       201 s~~edF~~~g-g~i~~n~~l~g~~~---------n~~~------~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~  263 (453)
T KOG2665|consen  201 SFGEDFDFMG-GRIYTNFRLQGIAQ---------NKEA------TFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL  263 (453)
T ss_pred             HHHHHHHHhc-ccccccceeccchh---------ccCC------CCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence            8888888887 68999999999876         1111      12244566655678999999 99999887654443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.19  E-value=1.4e-05  Score=83.78  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|||+||||||+|+++|..|++.    |.+|+|||++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~----G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL----GLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence            369999999999999999999996    99999999864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.18  E-value=1.4e-05  Score=83.86  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ..|||+||||||+|+++|..|++.    |++|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL----GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC----CCeEEEEeCC
Confidence            469999999999999999999996    9999999994

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.18  E-value=0.00056  Score=68.72  Aligned_cols=40  Identities=23%  Similarity=0.500  Sum_probs=34.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..+|||||||+|||++|..|-+.+   +.+|+|+|..+.++.+
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~g---f~~~~IlEa~dRIGGR   60 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENG---FIDVLILEASDRIGGR   60 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhC---CceEEEEEeccccCce
Confidence            458999999999999999999762   6789999999988754

>PRK12831 putative oxidoreductase; Provisional

Probab=98.17  E-value=3.1e-06  Score=88.39  Aligned_cols=38  Identities=32%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....||+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKM----GYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCC
Confidence            4568999999999999999999996    9999999988755

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.13  E-value=7.3e-06  Score=85.72  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+||||||+|+++|..|++.    |.+|+|||+++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~----g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN----GKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcc
Confidence            799999999999999999997    999999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.13  E-value=4.8e-06  Score=83.07  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH--HHHHHcCCcHHHHh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQYVQQ  132 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~~~~  132 (514)
                      .+|+++||.||++|++|+.|...   ...++..|||++.+.-..           |..+....+  .+|+++--.    .
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~---~~~~~~f~e~~~~f~Wh~-----------gmll~~~~~q~~fl~Dlvt~----~   63 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEH---GDLKALFLERRPSFSWHP-----------GMLLPGARMQVSFLKDLVTL----R   63 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH---H---EEEEES-SS--TTG-----------GG--SS-B-SS-TTSSSSTT----T
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhc---CCCCEEEEecCCCCCcCC-----------ccCCCCCccccccccccCcC----c
Confidence            48999999999999999999997   259999999998663111           111111111  112111000    0


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ....++.-+.+....+. ...|-.      .....+.|..+.++|.-.+.+.+ -.++++.+|++|+..         .+
T Consensus        64 ~P~s~~sflnYL~~~~r-l~~f~~------~~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~---------~~  126 (341)
T PF13434_consen   64 DPTSPFSFLNYLHEHGR-LYEFYN------RGYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD---------DD  126 (341)
T ss_dssp             -TTSTTSHHHHHHHTT--HHHHHH------H--SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE---------EE
T ss_pred             CCCCcccHHHHHHHcCC-hhhhhh------cCCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe---------cC
Confidence            00000000000000000 000000      00123679999999999888887 458999999999871         11


Q ss_pred             CccccccccCCeeEEEeC----CCcEEEeeE-EEecCCCchhhhhh
Q 010225          213 PSATTLFTKGHLAKLDLS----DGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~----~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                      .       +...+.|...    ++.++.|+. |.|.|..-.+-..+
T Consensus       127 ~-------~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  127 G-------DEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             T-------TEEEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred             C-------CccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence            0       1135777763    345899999 99999555454444

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.12  E-value=1.6e-05  Score=85.25  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHhc----cCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLA----SMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~----~~~~~~g~~V~viE~~~~~   94 (514)
                      ||+|||||+|||++|+.++    +.    |.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~----G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK----GLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC----CCeEEEEEccCCC
Confidence            8999999999999999998    54    8999999998864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.11  E-value=1.1e-05  Score=82.76  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.+|+|||||+||+++|..|++.+  ...+|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~--~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQG--FTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhC--CCCCEEEeCCCCCC
Confidence            457999999999999999999962  12379999988754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.10  E-value=7.1e-06  Score=92.16  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|||||||||++|+.|++.    |++|+|||+.+.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~----G~~VtVfE~~~~~  341 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE----GFPVTVFEAFHDL  341 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCCC
Confidence            468999999999999999999996    9999999998765

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.09  E-value=1.3e-05  Score=84.03  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ||+||||||+|+.+|..|++.    |.+|+|+|++..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~----g~~v~~~e~~~~   35 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL----GADVTVIERDGL   35 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCC
Confidence            799999999999999999996    999999998763

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.07  E-value=3.3e-05  Score=78.69  Aligned_cols=107  Identities=22%  Similarity=0.320  Sum_probs=79.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.                   +.         .        
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~----g~~Vtlv~~~~~~l-------------------~~---------~--------  180 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRA----GKAVTLVDNAASLL-------------------AS---------L--------  180 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCccc-------------------ch---------h--------
Confidence            35799999999999999999985    89999999877430                   00         0        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                        ....+...+.+.+++.| ++++++++|+++..              
T Consensus       181 ----------------------------------~~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  211 (377)
T PRK04965        181 ----------------------------------MPPEVSSRLQHRLTEMG-VHLLLKSQLQGLEK--------------  211 (377)
T ss_pred             ----------------------------------CCHHHHHHHHHHHHhCC-CEEEECCeEEEEEc--------------
Confidence                                              00123355666676777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                            ++..+.+.+.+|+++.||+ |.|.|..+.  +.+..+..
T Consensus       212 ------~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        212 ------TDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             ------cCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCC
Confidence                  3345678888999999999 999998664  44444443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.06  E-value=3.6e-05  Score=86.89  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..++||+|||||.|||++|+.+++.    |.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~----G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEH----GANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence            3568999999999999999999986    999999999885

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=7.1e-06  Score=82.60  Aligned_cols=161  Identities=19%  Similarity=0.197  Sum_probs=83.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHc-CCcHHHHhhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI-GAWQYVQQHR  134 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~  134 (514)
                      ++|+|||||++|+.+|.+|.+.+-..++ |.|||+.+..+..-.|....+.    ..++-.+...--.+ .+.+++.+..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~GiaYs~~~p~----~~lNv~a~~mS~~~pD~p~~F~~WL   76 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAYSTEEPE----HLLNVPAARMSAFAPDIPQDFVRWL   76 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCccCCCCCch----hhhccccccccccCCCCchHHHHHH
Confidence            6899999999999999999987432333 9999999988544333222211    11111110000000 0011111110


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcC---CC-c-eEEcCCeeEEEeeCCCCCCccc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT---EF-Q-KTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---g~-v-~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      ....   . ...+.        ..... ......+|..|-.+|.+++...   +. . -.+...+++++.+         
T Consensus        77 ~~~~---~-~~~d~--------~~~~~-d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~---------  134 (474)
T COG4529          77 QKQL---Q-RYRDP--------EDINH-DGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQ---------  134 (474)
T ss_pred             Hhcc---c-ccCCh--------hhcCC-ccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeeccee---------
Confidence            0000   0 00000        00111 1113456777777776665432   21 1 2233445566554         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhh
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVREL  252 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~  252 (514)
                        +       +.+....+...+|.+..||. |.|+|..-+....
T Consensus       135 --~-------~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~  169 (474)
T COG4529         135 --D-------TNAGGYLVTTADGPSEIADIIVLATGHSAPPADP  169 (474)
T ss_pred             --c-------cCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence              1       12466778888999999999 9999976655544

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.05  E-value=2e-05  Score=81.11  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||++||||||+|..+|..+++.    |.+|+|+|++...
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~----G~kvalvE~~~~l   39 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL----GLKVALVEKGERL   39 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCCEEEEeecCCc
Confidence            4579999999999999999999998    8889999999633

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.05  E-value=1.9e-05  Score=82.03  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|+|||||++|+.+|..|++..  .+.+|+|||+++..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~--~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhC--CCCCEEEEECCCCc
Confidence            7999999999999999998752  36899999999865

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.04  E-value=1.5e-05  Score=88.68  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+|+||||||||+++|+.|++.    |++|+|||+.+.+
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~----G~~VtV~Ek~~~~  574 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARA----GHPVTVFEREENA  574 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccc
Confidence            3457999999999999999999996    9999999998755

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.03  E-value=0.00012  Score=72.57  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+..++.+.+++.| .+|++...|.+|..                   +.+..+.|.+.||+++.++. |--.+.|-..
T Consensus       264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF  323 (561)
T ss_pred             hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence            556778899999998 89999999999987                   24567889999999999999 8777777665


Q ss_pred             hhhh
Q 010225          250 RELA  253 (514)
Q Consensus       250 R~~l  253 (514)
                      -+.+
T Consensus       324 ~kLl  327 (561)
T KOG4254|consen  324 EKLL  327 (561)
T ss_pred             HHhC
Confidence            5544

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.03  E-value=4.9e-06  Score=86.71  Aligned_cols=45  Identities=20%  Similarity=0.474  Sum_probs=39.8

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~   99 (514)
                      ...++.+|||||||++||++|..|.+.    |++|+|+|.++..+.+..
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~----G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF----GFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc----CCceEEEeccCCcCceeE
Confidence            345678999999999999999999998    999999999999886653

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=9.8e-06  Score=82.41  Aligned_cols=67  Identities=22%  Similarity=0.329  Sum_probs=48.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCceEEe----ChhhHHHHHHcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTV----TPATISFFKEIGA  126 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~--~~~~~~~~~~~~~~l----~~~~~~~l~~lgl  126 (514)
                      .+|+|+|||+|||++|+.|+.+    |++|+|+|+++.++.+.  |.+.+....-.|..+    -++.+..|++++.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~   73 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADA----GYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPI   73 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC----CCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCc
Confidence            3699999999999999999997    99999999999988654  433333333333322    2556677777764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.01  E-value=4.9e-05  Score=79.71  Aligned_cols=100  Identities=14%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------  214 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAAL----GVKVTLINTRDRLL----------S-----FL---------------------  214 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------C-----cC---------------------
Confidence            46899999999999999999996    99999999877430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -.++...|.+.+++.| ++++++++|++++.              
T Consensus       215 -----------------------------------d~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------  244 (461)
T PRK05249        215 -----------------------------------DDEISDALSYHLRDSG-VTIRHNEEVEKVEG--------------  244 (461)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------
Confidence                                               0113345666666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                            .++.+.+.+.+|.++.+|. |.|.|......
T Consensus       245 ------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        245 ------GDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             ------eCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence                  2345677777888899999 99999887654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.01  E-value=4.4e-05  Score=80.22  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      +|||+||||||+|+.+|+.+++.    |.+|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~----G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY----GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence            58999999999999999999997    9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.99  E-value=2.5e-05  Score=86.96  Aligned_cols=40  Identities=20%  Similarity=0.441  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.+|||||||++|+.+|..|.+.....+++|+||++.+.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            3489999999999999999976421236899999999865

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.98  E-value=3.7e-05  Score=68.51  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=67.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..||+|||+|-+||++||..++..  ..++|.|||..-.++...|.-.+...   ...+-..+.-+|+++|+        
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~r--PdlkvaIIE~SVaPGGGaWLGGQLFS---AMvvRKPAhLFL~Eigv--------  142 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNR--PDLKVAIIESSVAPGGGAWLGGQLFS---AMVVRKPAHLFLQEIGV--------  142 (328)
T ss_pred             ccceEEECCCccccceeeeeeccC--CCceEEEEEeeecCCCcccccchhhh---hhhhcChHHHHHHHhCC--------
Confidence            369999999999999999999642  47999999999888655542111000   01111223334444443        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEee
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~  200 (514)
                        +++      .              ...+-..-+-..|......+...+++++++..+-|.++..
T Consensus       143 --pYe------d--------------egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLiv  186 (328)
T KOG2960|consen  143 --PYE------D--------------EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIV  186 (328)
T ss_pred             --Ccc------c--------------CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhc
Confidence              111      0              1111122244556677777777788899888777777765

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.98  E-value=0.00011  Score=79.51  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .+|||+|||+||+|.++|..+++.    |.+|+|||++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~----G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER----GLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCC
Confidence            368999999999999999999996    9999999975

>PRK07208 hypothetical protein; Provisional

Probab=97.95  E-value=7.9e-06  Score=86.11  Aligned_cols=41  Identities=22%  Similarity=0.516  Sum_probs=36.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ++..||+|||||++||++|+.|++.    |++|+|+|+.+.++..
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~----g~~v~v~E~~~~~GG~   42 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKR----GYPVTVLEADPVVGGI   42 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCce
Confidence            4567999999999999999999996    9999999999887643

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.95  E-value=3.1e-05  Score=78.93  Aligned_cols=37  Identities=14%  Similarity=0.400  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||+||+++|..|.+..  ...+|+||++++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~--~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQD--AHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEeCCCCC
Confidence            48999999999999999998752  35789999998853

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.95  E-value=3.7e-05  Score=77.97  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|||||||++|+.+|..|.+.. .++.+|+|||+++..
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~-~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKP-LPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcC-CCCCEEEEECCCCCC
Confidence            4899999999999999996531 147899999988743

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.94  E-value=6.9e-05  Score=75.82  Aligned_cols=40  Identities=25%  Similarity=0.529  Sum_probs=35.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...++||+|||||.+|.-+|+-.+-    ||++|.++|++++.+
T Consensus        64 ~~~~fDVLIIGGGAtGaGcALDA~T----RGLktaLVE~~DF~S  103 (680)
T KOG0042|consen   64 STHEFDVLIIGGGATGAGCALDAAT----RGLKTALVEAGDFAS  103 (680)
T ss_pred             cCCcccEEEECCCccCcceeehhhc----ccceeEEEecccccC
Confidence            3467999999999999999998777    699999999999774

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.93  E-value=4.4e-05  Score=79.06  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+.+|||||||.+|+.+|..|.+.    +.+|+|||+++..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~----~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK----KYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC----CCeEEEEcCCCCc
Confidence            456899999999999999999764    7899999988744

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.92  E-value=4.3e-05  Score=80.16  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      +.|||+||||||+|..+|..+++.   .|.+|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~---~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATL---YKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHh---cCCEEEEEecc
Confidence            469999999999999999999993   18999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.92  E-value=2.3e-05  Score=79.69  Aligned_cols=152  Identities=14%  Similarity=0.165  Sum_probs=89.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC-CCCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA-LGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQ  131 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~  131 (514)
                      ..|||+|||||-||+-+|++.+|.    |.+++|+=-+.. .+.-+|. +.-...+.|  +--+   .++.|| +.-...
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARm----G~ktlLlT~~~dtig~msCN-PaIGG~~KG--~lvr---EIDALGG~Mg~~~   72 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARM----GAKTLLLTLNLDTIGEMSCN-PAIGGPGKG--HLVR---EIDALGGLMGKAA   72 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhcc----CCeEEEEEcCCCceeecccc-cccCCcccc--eeEE---eehhccchHHHhh
Confidence            459999999999999999999998    999999877653 3333331 000111111  1111   122232 111111


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ....   -++++.+......+.         .+-..+++.....++.+.+++.+|.+++.+ .|+++..           
T Consensus        73 D~~~---IQ~r~LN~sKGPAVr---------a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-----------  128 (621)
T COG0445          73 DKAG---IQFRMLNSSKGPAVR---------APRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-----------  128 (621)
T ss_pred             hhcC---CchhhccCCCcchhc---------chhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-----------
Confidence            1111   111222211110000         001235667777777788888888888777 6888865           


Q ss_pred             CCccccccccC-CeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          212 TPSATTLFTKG-HLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       212 ~~~~~~~~~~~-~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                              +++ ..+.|.+.+|..+.|+. |.++|.+=
T Consensus       129 --------e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL  158 (621)
T COG0445         129 --------EEGQRVVGVVTADGPEFHAKAVVLTTGTFL  158 (621)
T ss_pred             --------cCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence                    122 35778899999999999 99999753

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=3.3e-05  Score=76.84  Aligned_cols=158  Identities=16%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC-CCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      ...|||||||||=||+-+|.+.+|.    |-+.+++-.+ +.++.-+|. +.....++|..+  +.+++|.  |+...+.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~----Ga~TlLlT~~ld~Ig~msCN-PsfGGigKg~Lm--rEVDALd--Gl~~rvc   96 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL----GARTLLLTHNLDTIGEMSCN-PSFGGIGKGHLM--REVDALD--GLCSRVC   96 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc----CCceEEeecccccccccccC-cccCCcccceee--eeehhhc--chHhhhh
Confidence            5689999999999999999999997    8888777765 345444442 111122222222  2223332  2211221


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ......+.   +.+.... +.-        ..+-..++|..+-..+.+.+...++.+|+.+ .|.++..         ..
T Consensus        97 D~s~vq~k---~LNrs~G-PAV--------wg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~~  154 (679)
T KOG2311|consen   97 DQSGVQYK---VLNRSKG-PAV--------WGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------ED  154 (679)
T ss_pred             hhhhhhHH---HhhccCC-Ccc--------cChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------cc
Confidence            11110111   1111100 000        0000245666666666777766677888887 5777765         11


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                      .+.+     ..-...|.+.||..+.|+. |..+|.+
T Consensus       155 ~~~~-----~~~~~gV~l~dgt~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  155 PDDG-----HCVVSGVVLVDGTVVYAESVILTTGTF  185 (679)
T ss_pred             CCCC-----ceEEEEEEEecCcEeccceEEEeeccc
Confidence            1111     1123457788999999999 9999964

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.90  E-value=9.5e-05  Score=75.85  Aligned_cols=99  Identities=20%  Similarity=0.285  Sum_probs=75.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                          ...          
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l--------------------------~~~----------  183 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQR----RCKVTVIELAATVM--------------------------GRN----------  183 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCcch--------------------------hhh----------
Confidence            35799999999999999999986    99999999877430                          000          


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                        ....+...+.+.+++.| ++++++++|++++.              
T Consensus       184 ----------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------  214 (396)
T PRK09754        184 ----------------------------------APPPVQRYLLQRHQQAG-VRILLNNAIEHVVD--------------  214 (396)
T ss_pred             ----------------------------------cCHHHHHHHHHHHHHCC-CEEEeCCeeEEEEc--------------
Confidence                                              00123455666666777 99999999999863              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             ++.+.+.+.+|+++.||+ |.|.|.....
T Consensus       215 -------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~  243 (396)
T PRK09754        215 -------GEKVELTLQSGETLQADVVIYGIGISAND  243 (396)
T ss_pred             -------CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence                   234667788999999999 9999987653

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.89  E-value=5.6e-05  Score=73.37  Aligned_cols=38  Identities=37%  Similarity=0.618  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+|||+|||+||.|-.+|+..++.    |++.+.+|++...+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl----GlkTacvEkr~~LG   75 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL----GLKTACVEKRGTLG   75 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh----cceeEEEeccCccC
Confidence            589999999999999999999997    99999999988763

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.88  E-value=0.00079  Score=68.70  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+...|.+.+++ | ++++++++|++++.                    +++.+.|++.+|.+++||. |.|+|
T Consensus       130 g~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G  187 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANG  187 (381)
T ss_pred             cccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCC
Confidence            357889999999999988 7 99999999999986                    3456788888888899999 99999


Q ss_pred             CCchh
Q 010225          245 GKSRV  249 (514)
Q Consensus       245 ~~S~v  249 (514)
                      .++.-
T Consensus       188 ~~~~~  192 (381)
T TIGR03197       188 AQAGQ  192 (381)
T ss_pred             ccccc
Confidence            99853

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.88  E-value=1.2e-05  Score=84.97  Aligned_cols=40  Identities=33%  Similarity=0.534  Sum_probs=36.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +..++||+|||||.|||.+|+.++..    |++|+|+||....+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~----g~~V~l~~K~~~~r   42 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEA----GLKVALLSKAPPKR   42 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhc----CCcEEEEEccccCC
Confidence            45679999999999999999999996    89999999998776

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=9.2e-05  Score=77.64  Aligned_cols=99  Identities=21%  Similarity=0.334  Sum_probs=74.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +     .+                     
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------  211 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASL----GAEVTIVEALPRIL----------P-----GE---------------------  211 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCcC----------C-----cC---------------------
Confidence            35899999999999999999986    99999999987430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+...+.+.+++.+ ++++++++|++++.              
T Consensus       212 -----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------  241 (462)
T PRK06416        212 -----------------------------------DKEISKLAERALKKRG-IKIKTGAKAKKVEQ--------------  241 (462)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------
Confidence                                               0123345556666667 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCC---cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG---TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+.++   +++.||. |.|.|.....
T Consensus       242 ------~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        242 ------TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             ------eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence                  334566766665   5799999 9999987655

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.86  E-value=6e-05  Score=77.81  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=40.0

Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                      ...+...+...+ .+|+++++|++|+.                    .++.+.|.+.+|.++.||. |.|.......+
T Consensus       212 ~~~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  212 SLALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             HHHHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred             hHHHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhhhh
Confidence            333333444345 68999999999998                    5588999999999999999 76666544443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06116 glutathione reductase; Validated

Probab=97.85  E-value=0.00014  Score=75.99  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=75.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+++++.+.+.               ....                    
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l---------------~~~~--------------------  207 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGL----GSETHLFVRGDAPL---------------RGFD--------------------  207 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCc---------------cccC--------------------
Confidence            35899999999999999999996    89999999876430               0000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+...+.+.+++.| ++++++++|++++.              
T Consensus       208 ------------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------  236 (450)
T PRK06116        208 ------------------------------------PDIRETLVEEMEKKG-IRLHTNAVPKAVEK--------------  236 (450)
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-cEEECCCEEEEEEE--------------
Confidence                                                113345566666667 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           +.++.+.+.+.+|+++.||. |.|.|....+.
T Consensus       237 -----~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        237 -----NADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             -----cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence                 11233677788888999999 99999876553

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.85  E-value=4e-05  Score=85.19  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      |||||||+||+++|..|.+.. ..+++|+|||+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~-~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLN-RHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcC-CCCCeEEEEeCCCCC
Confidence            689999999999999887752 136899999998865

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=2.2e-05  Score=75.06  Aligned_cols=115  Identities=23%  Similarity=0.335  Sum_probs=79.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...|||+||||||+|.++|++.+|.    |++.-|+-.+- -               |-        .|+-+++ +.+..
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARK----GiRTGl~aerf-G---------------GQ--------vldT~~I-ENfIs  259 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARK----GIRTGLVAERF-G---------------GQ--------VLDTMGI-ENFIS  259 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhh----cchhhhhhhhh-C---------------Ce--------eccccch-hheec
Confidence            3569999999999999999999995    87754442211 0               11        1111121 01100


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                                         ++             ..+-.+|...|.+.+++.. |++....+.+.++.-         . 
T Consensus       260 -------------------v~-------------~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~a---------~-  296 (520)
T COG3634         260 -------------------VP-------------ETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEPA---------A-  296 (520)
T ss_pred             -------------------cc-------------cccchHHHHHHHHHHhhcC-chhhhhhhhhcceec---------C-
Confidence                               00             0234668899999999987 999888888888751         0 


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                             ..++-++|++++|-.+.++. |.++|+.
T Consensus       297 -------~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         297 -------VEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             -------CCCccEEEEecCCceeccceEEEecCcc
Confidence                   13467899999999999999 9999973

>PRK07846 mycothione reductase; Reviewed

Probab=97.82  E-value=7.5e-05  Score=77.88  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|||+||||||+|.++|..  ..    |.+|+|+|++..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~----G~~V~lie~~~~   33 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FA----DKRIAIVEKGTF   33 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCCC
Confidence            3899999999999988865  33    899999998653

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.78  E-value=3.2e-05  Score=80.45  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+|+||||||||+++|..|++..  +|++|+|||+.+.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~--~g~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAH--DGARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhC--CCCeEEEEecCCCC
Confidence            44678999999999999999998521  39999999999976

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.78  E-value=3.4e-05  Score=80.91  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=48.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCceE----EeChhhHHHHHHcCCcHHH
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRVS----TVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~--~~~~~~~~~~~----~l~~~~~~~l~~lgl~~~~  130 (514)
                      +|+|||||++||++|+.|++.    |++|+|+|+.+.++.....  .........|.    ...++..++++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA----GHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            589999999999999999996    9999999999887543211  11111111111    1246677888889876554


Q ss_pred             H
Q 010225          131 Q  131 (514)
Q Consensus       131 ~  131 (514)
                      .
T Consensus        77 ~   77 (474)
T TIGR02732        77 L   77 (474)
T ss_pred             c
Confidence            3

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02507 glutathione reductase

Probab=97.78  E-value=0.0002  Score=75.68  Aligned_cols=99  Identities=14%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+++.+.+-          .     .+                     
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~---------------------  242 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGM----GATVDLFFRKELPL----------R-----GF---------------------  242 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEecCCcC----------c-----cc---------------------
Confidence            35899999999999999999996    89999999876430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.| ++++.+++|++++.              
T Consensus       243 -----------------------------------d~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~--------------  272 (499)
T PLN02507        243 -----------------------------------DDEMRAVVARNLEGRG-INLHPRTNLTQLTK--------------  272 (499)
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123344556666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+|+++.+|. |.|.|.....
T Consensus       273 ------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        273 ------TEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             ------eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence                  2345677788888899999 9999987665

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.76  E-value=0.00074  Score=64.55  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||+|||+|.+||.+|+.|+..    |++|+|+|+...-
T Consensus         4 ~~~dvivvgaglaglvaa~elA~a----G~~V~ildQEgeq   40 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADA----GKRVLILDQEGEQ   40 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhc----CceEEEEcccccc
Confidence            468999999999999999999996    9999999998754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.76  E-value=2.5e-05  Score=82.57  Aligned_cols=37  Identities=27%  Similarity=0.494  Sum_probs=34.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      .||+|||||++||++|+.|++.    |++|+|+|+++.++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~----G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR----GYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence            5899999999999999999996    999999999988763

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.75  E-value=0.00014  Score=73.15  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++.+|||||||-+|+.+|..|.+.+ + +.+|++||+++..
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~h   40 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYH   40 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCcc
Confidence            3567999999999999999999973 2 6899999999844

>TIGR03452 mycothione_red mycothione reductase

Probab=97.74  E-value=7e-05  Score=78.14  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|||+|||+||+|..+|..  .+    |.+|+|+|++..
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~----g~~V~lie~~~~   34 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA----DKRIAIVEKGTF   34 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCCC
Confidence            5999999999999888654  34    899999998653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.74  E-value=0.00028  Score=74.04  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          .     ...                     
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~d---------------------  217 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTEL----GVKVTLVSSRDRVL----------P-----GED---------------------  217 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCcCC----------C-----CCC---------------------
Confidence            4799999999999999999996    99999999877430          0     000                     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                         ..+...+.+.+++.| ++++++++|++++.               
T Consensus       218 -----------------------------------~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~---------------  246 (466)
T PRK07845        218 -----------------------------------ADAAEVLEEVFARRG-MTVLKRSRAESVER---------------  246 (466)
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-cEEEcCCEEEEEEE---------------
Confidence                                               113344566666666 99999999999975               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           .++.+.+.+.+|+++.+|. |.|.|......
T Consensus       247 -----~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        247 -----TGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             -----eCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence                 2345677778888999999 99999876653

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.74  E-value=3.2e-05  Score=77.85  Aligned_cols=37  Identities=30%  Similarity=0.616  Sum_probs=33.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      +||+|||||++|+++|+.|++.    |.+|+|+|+++..+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~----G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL----NKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCCC
Confidence            6999999999999999999986    999999999876643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.74  E-value=0.00023  Score=74.06  Aligned_cols=98  Identities=13%  Similarity=0.186  Sum_probs=72.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+.+|..|++.    |.+|+|+|+.+.+.                             .         
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-----------------------------~---------  194 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKL----GSKVTVLDAASTIL-----------------------------P---------  194 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCccC-----------------------------C---------
Confidence            35899999999999999999996    89999999987430                             0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ..                               ...+...+.+.+++.| ++++++++|++++.              
T Consensus       195 --~~-------------------------------~~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~--------------  226 (438)
T PRK07251        195 --RE-------------------------------EPSVAALAKQYMEEDG-ITFLLNAHTTEVKN--------------  226 (438)
T ss_pred             --CC-------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------
Confidence              00                               0112334556666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.. +|.++.+|. |.|.|....+
T Consensus       227 ------~~~~v~v~~-~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        227 ------DGDQVLVVT-EDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             ------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence                  223455543 566899999 9999987664

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.73  E-value=0.00026  Score=73.87  Aligned_cols=99  Identities=18%  Similarity=0.255  Sum_probs=74.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~---------------------  205 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGL----GVQVTLIYRGELIL----------R-----GF---------------------  205 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEeCCCCC----------c-----cc---------------------
Confidence            35799999999999999999986    89999999876330          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -.++...+.+.+++.| ++++.+++|++++.              
T Consensus       206 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  235 (446)
T TIGR01424       206 -----------------------------------DDDMRALLARNMEGRG-IRIHPQTSLTSITK--------------  235 (446)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123344556666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+|+++.+|. |.|.|....+
T Consensus       236 ------~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       236 ------TDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             ------cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                  2244667777888899999 9999986554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.73  E-value=0.00029  Score=73.77  Aligned_cols=99  Identities=22%  Similarity=0.351  Sum_probs=71.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .                  +         
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~ll----------~------------------~---------  208 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRL----GTKVTIVEMAPQLL----------P------------------G---------  208 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------c------------------c---------
Confidence            35899999999999999999986    89999999877330          0                  0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                       . -.++.+.+.+.+++.| ++++++++|++++.              
T Consensus       209 ---------------------------------~-d~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~--------------  239 (458)
T PRK06912        209 ---------------------------------E-DEDIAHILREKLENDG-VKIFTGAALKGLNS--------------  239 (458)
T ss_pred             ---------------------------------c-cHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence                                             0 0123455666677666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~v  249 (514)
                            .+..+.+...++ .++.||+ |.|.|....+
T Consensus       240 ------~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        240 ------YKKQALFEYEGSIQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             ------cCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence                  223344443222 3699999 9999987765

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.73  E-value=0.00095  Score=66.69  Aligned_cols=62  Identities=16%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEec
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      ..++...+...|.+.+.+.| ++++.+++|++++.                    .++. ..|...+| ++.||. |.|+
T Consensus       132 g~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~  189 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAA  189 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcC
Confidence            46788999999999999988 99999999999986                    3343 45676666 699999 9999


Q ss_pred             CCCchh
Q 010225          244 GGKSRV  249 (514)
Q Consensus       244 G~~S~v  249 (514)
                      |.++.-
T Consensus       190 G~~~~~  195 (337)
T TIGR02352       190 GAWAGE  195 (337)
T ss_pred             Chhhhh
Confidence            998864

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.72  E-value=3.7e-05  Score=85.93  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..++|+||||||||+++|+.|++.    |++|+|||+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~----G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA----GHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeccccc
Confidence            457999999999999999999996    9999999998765

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.71  E-value=0.00025  Score=74.49  Aligned_cols=99  Identities=21%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          +     ..                     
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~---------------------  211 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNY----GVDVTIVEFLDRAL----------P-----NE---------------------  211 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCcC----------C-----cc---------------------
Confidence            35899999999999999999996    89999999876430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.| ++++++++|++++.              
T Consensus       212 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  241 (466)
T PRK07818        212 -----------------------------------DAEVSKEIAKQYKKLG-VKILTGTKVESIDD--------------  241 (466)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence                                               0113344556666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeC--CCc--EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS--DGT--SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g~--~~~ad~-V~AdG~~S~v  249 (514)
                            .+..+.+.+.  +|.  ++.+|. |.|.|....+
T Consensus       242 ------~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~  275 (466)
T PRK07818        242 ------NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV  275 (466)
T ss_pred             ------eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence                  2234444443  563  699999 9999987665

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.71  E-value=0.00032  Score=72.28  Aligned_cols=101  Identities=20%  Similarity=0.303  Sum_probs=79.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .+-.++|||||+.|+=+|..+++.    |.+|+|+|+.+.+-                                      
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~L----G~~VTiie~~~~iL--------------------------------------  209 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAAL----GSKVTVVERGDRIL--------------------------------------  209 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC--------------------------------------
Confidence            456799999999999999999998    99999999998651                                      


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         +.                              .-.++.+.+.+.+++.+ ++++.+++++.++.             
T Consensus       210 ---p~------------------------------~D~ei~~~~~~~l~~~g-v~i~~~~~v~~~~~-------------  242 (454)
T COG1249         210 ---PG------------------------------EDPEISKELTKQLEKGG-VKILLNTKVTAVEK-------------  242 (454)
T ss_pred             ---Cc------------------------------CCHHHHHHHHHHHHhCC-eEEEccceEEEEEe-------------
Confidence               00                              01335567777777744 99999999999976             


Q ss_pred             ccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCchhh
Q 010225          214 SATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S~vR  250 (514)
                             .++.+.+.+++|.  ++++|. +.|.|....+-
T Consensus       243 -------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~  275 (454)
T COG1249         243 -------KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD  275 (454)
T ss_pred             -------cCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence                   3344888888876  699999 99999876663

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.70  E-value=0.0003  Score=73.44  Aligned_cols=101  Identities=14%  Similarity=0.155  Sum_probs=75.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.               ..+                     
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~il---------------~~~---------------------  205 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGL----GSETHLVIRHERVL---------------RSF---------------------  205 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC---------------ccc---------------------
Confidence            35899999999999999999996    99999999887440               000                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.| ++++.+++|++++.              
T Consensus       206 -----------------------------------d~~~~~~~~~~l~~~g-I~i~~~~~v~~i~~--------------  235 (450)
T TIGR01421       206 -----------------------------------DSMISETITEEYEKEG-INVHKLSKPVKVEK--------------  235 (450)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence                                               0123345566666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~vR  250 (514)
                           +.++.+.+.+.+| .++.||. |.|.|....+.
T Consensus       236 -----~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       236 -----TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             -----eCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence                 0123356777777 5799999 99999876653

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.68  E-value=9.6e-05  Score=70.12  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .|||||+|.|||+++..+...    |-.|+++|+....+
T Consensus        11 pvvVIGgGLAGLsasn~iin~----gg~V~llek~~s~G   45 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK----GGIVILLEKAGSIG   45 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc----CCeEEEEeccCCcC
Confidence            599999999999999999885    44599999998775

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.66  E-value=4.2e-05  Score=75.14  Aligned_cols=37  Identities=27%  Similarity=0.505  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ||+||||+|++|+.+|..|++.+   +.+|+|+|++....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~---~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAG---NKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTST---TS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCC---CCcEEEEEccccCc
Confidence            79999999999999999999972   47999999998654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.66  E-value=0.00034  Score=77.95  Aligned_cols=98  Identities=22%  Similarity=0.382  Sum_probs=74.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+                          +..     .+     
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~----G~~Vtvv~~~~~l--------------------------l~~-----~l-----  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNL----GMDVSVIHHAPGL--------------------------MAK-----QL-----  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCeEEEEccCCch--------------------------hhh-----hc-----
Confidence            5799999999999999999996    9999999987633                          000     00     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                        -..+...+.+.+++.| ++++++++++++..               
T Consensus       181 ----------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~---------------  210 (785)
T TIGR02374       181 ----------------------------------DQTAGRLLQRELEQKG-LTFLLEKDTVEIVG---------------  210 (785)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCceEEEEc---------------
Confidence                                              0113345566666777 99999999999864               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                           ++....|.+.||+++.+|+ |.|.|....
T Consensus       211 -----~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       211 -----ATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             -----CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence                 2345567888999999999 999997654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.66  E-value=9.1e-05  Score=71.11  Aligned_cols=40  Identities=25%  Similarity=0.506  Sum_probs=35.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN   98 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~   98 (514)
                      ...+|+|||+|++||++|+.|++     .++|+|||.+...+...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~-----rhdVTLfEA~~rlGGha   46 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR-----RHDVTLFEADRRLGGHA   46 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc-----ccceEEEeccccccCcc
Confidence            45789999999999999999999     48999999999886443

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.66  E-value=0.00032  Score=73.77  Aligned_cols=100  Identities=15%  Similarity=0.269  Sum_probs=73.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     ..                     
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------  222 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRL----GAEVTILEALPAFL----------A-----AA---------------------  222 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCccC----------C-----cC---------------------
Confidence            35899999999999999999996    89999999887430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.| ++++.+++|++++.              
T Consensus       223 -----------------------------------d~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------  252 (475)
T PRK06327        223 -----------------------------------DEQVAKEAAKAFTKQG-LDIHLGVKIGEIKT--------------  252 (475)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-cEEEeCcEEEEEEE--------------
Confidence                                               0223344556666666 99999999999976              


Q ss_pred             cccccccCCeeEEEeCC--C--cEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSD--G--TSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~--g--~~~~ad~-V~AdG~~S~vR  250 (514)
                            .+..+.+.+.+  |  .++.+|. |.|.|....+.
T Consensus       253 ------~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        253 ------GGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             ------cCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence                  22345555544  3  4699999 99999876653

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.66  E-value=4.9e-05  Score=72.37  Aligned_cols=36  Identities=28%  Similarity=0.586  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +++||+|||||.||+++|+.|+++    |.++.||-++..
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~----Gk~c~iv~~gQs   36 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQA----GKRCAIVNRGQS   36 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhc----CCcEEEEeCChh
Confidence            478999999999999999999997    999999998764

>PRK07846 mycothione reductase; Reviewed

Probab=97.65  E-value=0.00041  Score=72.35  Aligned_cols=98  Identities=15%  Similarity=0.272  Sum_probs=72.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~ll----------~-----~~d--------------------  206 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSAL----GVRVTVVNRSGRLL----------R-----HLD--------------------  206 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence            35899999999999999999996    99999999877430          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          .++.+.+.+.. +.+ ++++++++|++++.              
T Consensus       207 ------------------------------------~~~~~~l~~l~-~~~-v~i~~~~~v~~i~~--------------  234 (451)
T PRK07846        207 ------------------------------------DDISERFTELA-SKR-WDVRLGRNVVGVSQ--------------  234 (451)
T ss_pred             ------------------------------------HHHHHHHHHHH-hcC-eEEEeCCEEEEEEE--------------
Confidence                                                01122233222 335 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+|+++.+|. |.|.|....+
T Consensus       235 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        235 ------DGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             ------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence                  3345677778888999999 9999987655

>TIGR02053 MerA mercuric reductase

Probab=97.64  E-value=4.4e-05  Score=80.10  Aligned_cols=33  Identities=33%  Similarity=0.647  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      |||+||||||+|+++|..|++.    |++|+|||++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~----g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL----GASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence            7999999999999999999996    99999999876

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02053 MerA mercuric reductase

Probab=97.64  E-value=0.00037  Score=73.12  Aligned_cols=99  Identities=17%  Similarity=0.316  Sum_probs=71.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .     ..                     
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~---------------------  205 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARL----GSEVTILQRSDRLL----------P-----RE---------------------  205 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCcCC----------C-----cc---------------------
Confidence            36899999999999999999996    99999999887430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.+ ++++++++|+.++.              
T Consensus       206 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------  235 (463)
T TIGR02053       206 -----------------------------------EPEISAAVEEALAEEG-IEVVTSAQVKAVSV--------------  235 (463)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------
Confidence                                               0113344555666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeC---CCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS---DGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~g~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+.   ++.++.+|. |.|.|.....
T Consensus       236 ------~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~  268 (463)
T TIGR02053       236 ------RGGGKIITVEKPGGQGEVEADELLVATGRRPNT  268 (463)
T ss_pred             ------cCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence                  2233444432   235799999 9999976654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=97.63  E-value=0.00045  Score=72.46  Aligned_cols=99  Identities=13%  Similarity=0.239  Sum_probs=71.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     ..                     
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~---------------------  210 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRF----GSEVTVIERGPRLL----------P-----RE---------------------  210 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCCC----------c-----cc---------------------
Confidence            35899999999999999999996    89999999887430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       211 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------  240 (463)
T PRK06370        211 -----------------------------------DEDVAAAVREILEREG-IDVRLNAECIRVER--------------  240 (463)
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123345566666666 99999999999975              


Q ss_pred             cccccccCCeeEEE--eC-CCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLD--LS-DGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~--~~-~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.  .. ++.++.+|. |.|.|.....
T Consensus       241 ------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        241 ------DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             ------cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence                  22333333  33 345799999 9999977654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.62  E-value=0.00042  Score=72.89  Aligned_cols=101  Identities=18%  Similarity=0.365  Sum_probs=72.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +                            
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~----g~~Vtli~~~~~il----------~----------------------------  217 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADF----GVEVTVVEAADRIL----------P----------------------------  217 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccC----------C----------------------------
Confidence            35899999999999999999996    99999999887430          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                               ....+...+.+.+++.| ++++.+++|++++.         ++   
T Consensus       218 --~-------------------------------~~~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~---  251 (472)
T PRK05976        218 --T-------------------------------EDAELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK---  251 (472)
T ss_pred             --c-------------------------------CCHHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---
Confidence              0                               00223445556666666 99999999999963         00   


Q ss_pred             cccccccCCeeEEEeCCCc--EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S~v  249 (514)
                            .+....+.+.+|.  ++.+|. |.|.|....+
T Consensus       252 ------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        252 ------DGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             ------CCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence                  1123334445663  699999 9999987654

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.62  E-value=0.0003  Score=69.35  Aligned_cols=154  Identities=12%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH--HHHHHcCCcHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQY  129 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~  129 (514)
                      +...+|++.||-||.-|++|+.|..+   .++++..+||++.+...          + |..+...++  .++++|=    
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~---~~~~~lFLerkp~F~WH----------p-GmllegstlQv~FlkDLV----   63 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEH---SGLKSLFLERKPDFSWH----------P-GMLLEGSTLQVPFLKDLV----   63 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccc---cCcceEEEecCCCCCcC----------C-CcccCCccccccchhhhc----
Confidence            45679999999999999999999998   36889999999987321          1 233332222  1233220    


Q ss_pred             HHhhhccCcceEEEEe---CCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCC
Q 010225          130 VQQHRHAYFDKMQVWD---YTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (514)
Q Consensus       130 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~  206 (514)
                        ... .+-...+|.+   ..+ ....|      .....+.+.|.++.+++.=.+...+  .+++|.+|++|..      
T Consensus        64 --Tl~-~PTs~ySFLNYL~~h~-RLy~F------l~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~------  125 (436)
T COG3486          64 --TLV-DPTSPYSFLNYLHEHG-RLYEF------LNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISS------  125 (436)
T ss_pred             --ccc-CCCCchHHHHHHHHcc-hHhhh------hhhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccc------
Confidence              000 0111111111   000 00000      0011256889999998888887776  5789999997732      


Q ss_pred             cccCCCCccccccccCCeeE--EEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          207 ISVDSTPSATTLFTKGHLAK--LDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                          .+        .+....  +...++..++|+- |...|..-.+-..+
T Consensus       126 ----~~--------~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f  163 (436)
T COG3486         126 ----LD--------GDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF  163 (436)
T ss_pred             ----cC--------CcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence                11        223333  6667787899999 99999877665444

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.59  E-value=0.00056  Score=70.98  Aligned_cols=97  Identities=16%  Similarity=0.254  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||++|+-+|..|++.    |.+|+++++.+.+.                  .                 .   
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~~------------------~-----------------~---  175 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRER----GKNVTLIHRSERIL------------------N-----------------K---  175 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcccC------------------c-----------------c---
Confidence            5899999999999999999996    89999999876320                  0                 0   


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       .                              . ...+...+.+.+++.| ++++++++|++++.               
T Consensus       176 -~------------------------------~-~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~---------------  207 (427)
T TIGR03385       176 -L------------------------------F-DEEMNQIVEEELKKHE-INLRLNEEVDSIEG---------------  207 (427)
T ss_pred             -c------------------------------c-CHHHHHHHHHHHHHcC-CEEEeCCEEEEEec---------------
Confidence             0                              0 0223455666667777 99999999999964               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           + +.+ +.+.+|+++.+|. |.|.|.....
T Consensus       208 -----~-~~~-v~~~~g~~i~~D~vi~a~G~~p~~  235 (427)
T TIGR03385       208 -----E-ERV-KVFTSGGVYQADMVILATGIKPNS  235 (427)
T ss_pred             -----C-CCE-EEEcCCCEEEeCEEEECCCccCCH
Confidence                 1 222 4566888999999 9999987543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.58  E-value=6.6e-05  Score=75.02  Aligned_cols=37  Identities=35%  Similarity=0.714  Sum_probs=34.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+|+|||||++|+++|+.|++.    |++|.|+||.+.++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~----G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM----GFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc----CCeEEEEecCCccc
Confidence            46899999999999999999998    99999999999885

>PRK02106 choline dehydrogenase; Validated

Probab=97.58  E-value=7.2e-05  Score=80.33  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=34.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++.++|+||||||++|+.+|..|++.   .|++|+|||+++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~---~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSED---PDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence            45679999999999999999999994   3999999999963

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.57  E-value=0.00051  Score=71.43  Aligned_cols=94  Identities=12%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                   +.       +           
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~-------------------~~-------~-----------  187 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYER----GLHPTLIHRSDKIN-------------------KL-------M-----------  187 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccc-------------------hh-------c-----------
Confidence            5899999999999999999996    89999999877430                   00       0           


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                        -.++...+.+.+++.| ++++++++|++++.               
T Consensus       188 ----------------------------------d~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------------  217 (438)
T PRK13512        188 ----------------------------------DADMNQPILDELDKRE-IPYRLNEEIDAING---------------  217 (438)
T ss_pred             ----------------------------------CHHHHHHHHHHHHhcC-CEEEECCeEEEEeC---------------
Confidence                                              0123345566666766 99999999999853               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             .  .+.+.+|+++.+|. |.|.|.....
T Consensus       218 -------~--~v~~~~g~~~~~D~vl~a~G~~pn~  243 (438)
T PRK13512        218 -------N--EVTFKSGKVEHYDMIIEGVGTHPNS  243 (438)
T ss_pred             -------C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence                   2  45567788899999 9999976644

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.54  E-value=0.00058  Score=71.61  Aligned_cols=35  Identities=17%  Similarity=0.415  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~----G~~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRL----GAQVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCC
Confidence            46899999999999999999996    999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.54  E-value=0.0007  Score=70.55  Aligned_cols=97  Identities=13%  Similarity=0.295  Sum_probs=73.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          +         .                   
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~---------~-------------------  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANF----GSKVTILEAASLFL----------P---------R-------------------  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC----------C---------C-------------------
Confidence            4899999999999999999996    99999999876430          0         0                   


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                        .                               -..+...+.+.+++.| ++++++++|++++.               
T Consensus       197 --~-------------------------------~~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~---------------  227 (441)
T PRK08010        197 --E-------------------------------DRDIADNIATILRDQG-VDIILNAHVERISH---------------  227 (441)
T ss_pred             --c-------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence              0                               0123345666777777 99999999999975               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           +++.+.+..+++ ++.+|. |.|.|.....
T Consensus       228 -----~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        228 -----HENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             -----cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                 234566666555 489999 9999987765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.53  E-value=0.00057  Score=76.34  Aligned_cols=101  Identities=18%  Similarity=0.253  Sum_probs=75.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      ..++|||||+.|+-+|..|++.    |.+|+|+|+.+.+-                   +.            .+     
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~----G~~VtvVe~~~~ll-------------------~~------------~l-----  185 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNL----GVETHVIEFAPMLM-------------------AE------------QL-----  185 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccch-------------------hh------------hc-----
Confidence            4799999999999999999996    99999999876320                   00            00     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                        -......+.+.+++.| |+++++++++++..           +.  
T Consensus       186 ----------------------------------d~~~~~~l~~~L~~~G-V~v~~~~~v~~I~~-----------~~--  217 (847)
T PRK14989        186 ----------------------------------DQMGGEQLRRKIESMG-VRVHTSKNTLEIVQ-----------EG--  217 (847)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHCC-CEEEcCCeEEEEEe-----------cC--
Confidence                                              0123355666777777 99999999999964           00  


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           .+....+.+.||+++.+|+ |.|.|.....
T Consensus       218 -----~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        218 -----VEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             -----CCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence                 1234567888999999999 9999976654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.52  E-value=0.00011  Score=72.48  Aligned_cols=75  Identities=25%  Similarity=0.508  Sum_probs=47.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCC-------CCceE----EeChhhHHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP-------DPRVS----TVTPATISFFK  122 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~-------~~~~~----~l~~~~~~~l~  122 (514)
                      ...+|+|||||++||++||+|++..  ....|+|+|+.+..+  +|.......       .+++.    -...+.+..++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~--p~~~i~l~Ea~~RvG--GwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~   85 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLG--PDVTITLFEASPRVG--GWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVS   85 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcC--CCceEEEEecCCccc--ceeeeccCCCceeeccCCCccCcCCcchhHHHHHHH
Confidence            4578999999999999999999972  123467799998763  442221000       01111    11224667788


Q ss_pred             HcCCcHHHHh
Q 010225          123 EIGAWQYVQQ  132 (514)
Q Consensus       123 ~lgl~~~~~~  132 (514)
                      ++|+.+++..
T Consensus        86 dLGl~~e~~~   95 (491)
T KOG1276|consen   86 DLGLEDELQP   95 (491)
T ss_pred             HcCccceeee
Confidence            8998666544

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.51  E-value=8.9e-05  Score=78.30  Aligned_cols=33  Identities=42%  Similarity=0.553  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .|||+||||||+|+++|..|+++    |++|+|||+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~----G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH----GKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCeEEEEecc
Confidence            58999999999999999999997    9999999974

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.50  E-value=0.00012  Score=75.38  Aligned_cols=39  Identities=18%  Similarity=0.323  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ....|+||||||||+.+|..|.+.   .|++|+||||.+.++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~---~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH---ERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh---cCCeEEEEecCCCCc
Confidence            456899999999999999976543   399999999999873

>TIGR03452 mycothione_red mycothione reductase

Probab=97.49  E-value=0.001  Score=69.44  Aligned_cols=98  Identities=17%  Similarity=0.285  Sum_probs=70.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               ..+.                    
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d--------------------  209 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSAL----GTRVTIVNRSTKLL---------------RHLD--------------------  209 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccc---------------cccC--------------------
Confidence            35899999999999999999996    89999999876330               0000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          .++...+.+.. +.+ ++++++++|++++.              
T Consensus       210 ------------------------------------~~~~~~l~~~~-~~g-I~i~~~~~V~~i~~--------------  237 (452)
T TIGR03452       210 ------------------------------------EDISDRFTEIA-KKK-WDIRLGRNVTAVEQ--------------  237 (452)
T ss_pred             ------------------------------------HHHHHHHHHHH-hcC-CEEEeCCEEEEEEE--------------
Confidence                                                00112222222 235 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+|+++.+|. |.|.|.....
T Consensus       238 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       238 ------DGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             ------cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                  2345677777888899999 9999976654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.49  E-value=0.0011  Score=69.64  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=74.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..++.. ...|.+|+|+|+.+.+.               ..+                     
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l-~~~G~~Vtli~~~~~il---------------~~~---------------------  229 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAY-KPRGGKVTLCYRNNMIL---------------RGF---------------------  229 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHh-ccCCCeEEEEecCCccc---------------ccc---------------------
Confidence            35799999999999999765432 00388999999887430               000                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -.++.+.+.+.+++.| ++++++++|++++.              
T Consensus       230 -----------------------------------d~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~--------------  259 (486)
T TIGR01423       230 -----------------------------------DSTLRKELTKQLRANG-INIMTNENPAKVTL--------------  259 (486)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence                                               0234456666777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           +.++...+.+.+|.++.+|. |.|.|......
T Consensus       260 -----~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~  291 (486)
T TIGR01423       260 -----NADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ  291 (486)
T ss_pred             -----cCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence                 01233566677788899999 99999877653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.48  E-value=0.00095  Score=70.54  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++.....                .+                      
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~----------------------  220 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNEL----GFDVTVAVRSIPLR----------------GF----------------------  220 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCcccc----------------cC----------------------
Confidence            4899999999999999999996    99999998632110                00                      


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                        -..+.+.+.+.+++.| ++++.+++++.++.               
T Consensus       221 ----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~v~~---------------  250 (499)
T PTZ00052        221 ----------------------------------DRQCSEKVVEYMKEQG-TLFLEGVVPINIEK---------------  250 (499)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCeEEEEEE---------------
Confidence                                              0113345666666777 99999999998875               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           .++.+.+.+.+|+++.+|. |.|.|....+.
T Consensus       251 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        251 -----MDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             -----cCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence                 2234567777888899999 99999877653

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.001  Score=60.03  Aligned_cols=117  Identities=16%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+|||.||++-++|+.++++    .++.+|||-.-.-+           ...|..|...+                
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaara----elkPllfEG~~~~~-----------i~pGGQLtTTT----------------   55 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARA----ELKPLLFEGMMANG-----------IAPGGQLTTTT----------------   55 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhc----ccCceEEeeeeccC-----------cCCCceeeeee----------------
Confidence            445899999999999999999997    78999999543210           00011111000                


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                           +...++..+-  -+.-.+|...++++..+.| .+|+.. .|.+++.             
T Consensus        56 ---------------------~veNfPGFPd--gi~G~~l~d~mrkqs~r~G-t~i~tE-tVskv~~-------------   97 (322)
T KOG0404|consen   56 ---------------------DVENFPGFPD--GITGPELMDKMRKQSERFG-TEIITE-TVSKVDL-------------   97 (322)
T ss_pred             ---------------------ccccCCCCCc--ccccHHHHHHHHHHHHhhc-ceeeee-ehhhccc-------------
Confidence                                 0001111111  1455779999999999988 777776 5777765             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                             ......+.. |...+.||. |.|+|+..
T Consensus        98 -------sskpF~l~t-d~~~v~~~avI~atGAsA  124 (322)
T KOG0404|consen   98 -------SSKPFKLWT-DARPVTADAVILATGASA  124 (322)
T ss_pred             -------cCCCeEEEe-cCCceeeeeEEEecccce
Confidence                   446666665 455699999 99999754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.47  E-value=0.00098  Score=68.52  Aligned_cols=99  Identities=21%  Similarity=0.305  Sum_probs=76.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||+|++|+.+|..|++.    |++|+++|+.+.+..               .+.                    
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~----G~~v~l~e~~~~~~~---------------~~~--------------------  176 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR----GKKVTLIEAADRLGG---------------QLL--------------------  176 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcccccch---------------hhh--------------------
Confidence            46999999999999999999996    999999999986510               000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                        . ..+...+.+.++..| ++++++.++.+++.              
T Consensus       177 ----------------------------------~-~~~~~~~~~~l~~~g-i~~~~~~~~~~i~~--------------  206 (415)
T COG0446         177 ----------------------------------D-PEVAEELAELLEKYG-VELLLGTKVVGVEG--------------  206 (415)
T ss_pred             ----------------------------------h-HHHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------
Confidence                                              0 235566777777777 99999999999976              


Q ss_pred             cccccccCCeeE---EEeCCCcEEEeeE-EEecCCCch
Q 010225          215 ATTLFTKGHLAK---LDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       215 ~~~~~~~~~~~~---v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                            ..+...   +...++..+.+|+ +.+.|....
T Consensus       207 ------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         207 ------KGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             ------ccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence                  222222   5667888899999 999987663

>PRK14694 putative mercuric reductase; Provisional

Probab=97.47  E-value=0.0011  Score=69.70  Aligned_cols=97  Identities=15%  Similarity=0.272  Sum_probs=71.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+++.....                ..                     
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~----g~~Vtlv~~~~~l~----------------~~---------------------  216 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARL----GSRVTVLARSRVLS----------------QE---------------------  216 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEECCCCCC----------------CC---------------------
Confidence            35899999999999999999996    89999998643110                00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+...+.+.+++.| ++++++++|++++.              
T Consensus       217 -----------------------------------~~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~--------------  246 (468)
T PRK14694        217 -----------------------------------DPAVGEAIEAAFRREG-IEVLKQTQASEVDY--------------  246 (468)
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123345666666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.++ ++.+|. |.|.|.....
T Consensus       247 ------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        247 ------NGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             ------cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence                  234455665444 699999 9999987765

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.46  E-value=0.00012  Score=80.72  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....+|+||||||||+++|+.|++.    |++|+|+|+.+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~----Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRS----GHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhC----CCeEEEEcccc
Confidence            3567999999999999999999995    99999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.45  E-value=0.00014  Score=75.77  Aligned_cols=38  Identities=32%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...++|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~----G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKA----GHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence            3568999999999999999999996    9999999998755

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.45  E-value=0.0011  Score=69.11  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=71.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|.+.    |.+|+++++.+..-                   +.                  
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-------------------~~------------------  187 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHL----GKNVRIIQLEDRIL-------------------PD------------------  187 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCcEEEEeCCcccC-------------------ch------------------
Confidence            35899999999999999999986    89999998776320                   00                  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                        .              . ...+.+.+.+.+++.| ++++++++|++++.              
T Consensus       188 ------------------~--------------~-~~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------  219 (444)
T PRK09564        188 ------------------S--------------F-DKEITDVMEEELRENG-VELHLNEFVKSLIG--------------  219 (444)
T ss_pred             ------------------h--------------c-CHHHHHHHHHHHHHCC-CEEEcCCEEEEEec--------------
Confidence                              0              0 1224556777777777 99999999999954              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                            ++....+..+ +.++.||+ |.|.|....
T Consensus       220 ------~~~~~~v~~~-~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        220 ------EDKVEGVVTD-KGEYEADVVIVATGVKPN  247 (444)
T ss_pred             ------CCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence                  2233344444 44699999 999997654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.43  E-value=0.00014  Score=79.50  Aligned_cols=37  Identities=32%  Similarity=0.531  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+||||||+||++|..|++.    |++|+|||+.+.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~----G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN----GVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            457999999999999999999996    9999999998765

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.43  E-value=0.00017  Score=75.75  Aligned_cols=38  Identities=32%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...++|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~----G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARA----GHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCC
Confidence            3457999999999999999999996    9999999998865

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.42  E-value=0.00014  Score=74.52  Aligned_cols=35  Identities=31%  Similarity=0.564  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~----g~~v~vi~~~~   35 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEA----GKRVALVAKGQ   35 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEECCC
Confidence            368999999999999999999996    99999999874

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.40  E-value=0.00018  Score=68.55  Aligned_cols=37  Identities=27%  Similarity=0.508  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+|++|||+|++|+.+|..|+++    |.+|+|+||++-++
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~----gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL----GKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc----CCEEEEEeccccCC
Confidence            37999999999999999999997    99999999999875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.40  E-value=0.00017  Score=82.09  Aligned_cols=38  Identities=26%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...+|+|||||||||++|..|++.    |++|+|||+.+.++
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~----G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY----GVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCc
Confidence            457999999999999999999996    99999999987663

>PRK14727 putative mercuric reductase; Provisional

Probab=97.40  E-value=0.0015  Score=68.78  Aligned_cols=97  Identities=16%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+++.....                .+.                     
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~l~----------------~~d---------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARL----GSRVTILARSTLLF----------------RED---------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCEEEEEEcCCCCC----------------cch---------------------
Confidence            5899999999999999999986    99999998743110                000                     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                         ..+...+.+.+++.| ++++++++|++++.               
T Consensus       228 -----------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~---------------  256 (479)
T PRK14727        228 -----------------------------------PLLGETLTACFEKEG-IEVLNNTQASLVEH---------------  256 (479)
T ss_pred             -----------------------------------HHHHHHHHHHHHhCC-CEEEcCcEEEEEEE---------------
Confidence                                               113345666667777 99999999999975               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           .++.+.+...++ ++.+|. |.|.|....+.
T Consensus       257 -----~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        257 -----DDNGFVLTTGHG-ELRAEKLLISTGRHANTH  286 (479)
T ss_pred             -----eCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence                 234566666555 589999 99999987663

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.39  E-value=0.00016  Score=73.25  Aligned_cols=34  Identities=35%  Similarity=0.647  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +||+|||||++|+++|+.|++.    |++|+|+|++..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~----g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEA----GKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHC----CCCEEEEeCCCc
Confidence            6999999999999999999996    999999999863

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.36  E-value=0.00018  Score=75.66  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      |||+|||+||+|+++|+.|++.    |++|+|||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~----g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA----GLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC----CCeEEEEeccCccC
Confidence            6999999999999999999996    99999999998775

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.35  E-value=0.00021  Score=79.42  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+|+||||||||+++|..|++.    |++|+|||+.+.+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~----G~~V~v~e~~~~~  466 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKR----GYDVTVFEALHEI  466 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            3467999999999999999999996    9999999997655

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.34  E-value=0.00024  Score=74.33  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...++|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~----g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARK----GYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCC
Confidence            3457999999999999999999996    9999999998755

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.33  E-value=0.0016  Score=67.54  Aligned_cols=50  Identities=14%  Similarity=0.076  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       173 l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                      +.+.+.+.+++.| |+++++++|+++..                      +  .|.+++|+++.+|+ |-|.|...
T Consensus       230 ~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        230 LRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence            4455666677777 99999999999853                      3  35577899999999 99999543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.32  E-value=0.0015  Score=68.54  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRL----GSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCC
Confidence            5899999999999999999996    999999998874

>PRK13748 putative mercuric reductase; Provisional

Probab=97.31  E-value=0.002  Score=69.30  Aligned_cols=97  Identities=16%  Similarity=0.198  Sum_probs=71.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+++.....                ...                    
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~----------------~~d--------------------  309 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARL----GSKVTILARSTLFF----------------RED--------------------  309 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCcccc----------------ccC--------------------
Confidence            35899999999999999999996    99999999743210                000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+...+.+.+++.| ++++++++|++++.              
T Consensus       310 ------------------------------------~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------  338 (561)
T PRK13748        310 ------------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------  338 (561)
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------
Confidence                                                112244555666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.++ ++.+|. |.|.|.....
T Consensus       339 ------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        339 ------VDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             ------cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence                  234556666555 599999 9999987665

>PTZ00058 glutathione reductase; Provisional

Probab=97.31  E-value=0.0018  Score=69.03  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.                          .            
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~----G~~Vtli~~~~~il--------------------------~------------  274 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRL----GAESYIFARGNRLL--------------------------R------------  274 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCcEEEEEeccccc--------------------------c------------
Confidence            46899999999999999999996    99999999877330                          0            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                              ++ .++.+.+.+.+++.| ++++++++|.+++.              
T Consensus       275 --~------------------------------~d-~~i~~~l~~~L~~~G-V~i~~~~~V~~I~~--------------  306 (561)
T PTZ00058        275 --K------------------------------FD-ETIINELENDMKKNN-INIITHANVEEIEK--------------  306 (561)
T ss_pred             --c------------------------------CC-HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence              0                              00 123344556666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~v  249 (514)
                           ++++.+.+.+.++ +++.+|. |.|.|....+
T Consensus       307 -----~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~  338 (561)
T PTZ00058        307 -----VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT  338 (561)
T ss_pred             -----cCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence                 0112355554444 4799999 9999976554

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.00066  Score=64.85  Aligned_cols=121  Identities=14%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhh---HHHHHHcCCcH-HH
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT---ISFFKEIGAWQ-YV  130 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~l~~lgl~~-~~  130 (514)
                      ...|-|||||.||.-+|+.+++.    |++|.|+|-++.-.....     ....-...+..++   ...-...|+.. ++
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~----Gv~V~L~EMRp~k~TpaH-----~td~fAELVCSNSlr~~~~~navGlLk~EM   73 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKR----GVPVILYEMRPVKGTPAH-----KTDNFAELVCSNSLRSDALTNAVGLLKAEM   73 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHc----CCcEEEEEcccccCCCcc-----cccchhhheeccccccchhhhhhHHHHHHH
Confidence            34699999999999999999995    999999998764321110     0000001111111   11111223221 11


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA  199 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~  199 (514)
                      ...+.     +-+...+..         ..+--....++|..|.+.+-+.+++++.|+|+.+ +|+.+-
T Consensus        74 R~lgS-----lii~~Ad~~---------~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~iP  127 (439)
T COG1206          74 RLLGS-----LIIEAADKH---------RVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEIP  127 (439)
T ss_pred             HHhhh-----HHhhhhhhc---------cCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccCC
Confidence            11111     000000000         0011224679999999999999999998998887 787773

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.27  E-value=0.0022  Score=67.47  Aligned_cols=97  Identities=16%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++.....                .+                      
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~----------------------  218 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR----------------GF----------------------  218 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHh----CCcEEEEEeccccc----------------cc----------------------
Confidence            4799999999999999999996    89999998632110                00                      


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                        -.++.+.+.+.+++.| ++++++++++.+..               
T Consensus       219 ----------------------------------d~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~---------------  248 (484)
T TIGR01438       219 ----------------------------------DQDCANKVGEHMEEHG-VKFKRQFVPIKVEQ---------------  248 (484)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCceEEEEEE---------------
Confidence                                              0123345566666666 99999999999875               


Q ss_pred             ccccccCCeeEEEeCCC---cEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDG---TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~~S~v  249 (514)
                           .++.+.+.+.++   .++.+|. |.|.|....+
T Consensus       249 -----~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       249 -----IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             -----cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence                 223455666555   3799999 9999976554

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=97.24  E-value=0.0027  Score=67.75  Aligned_cols=101  Identities=14%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .-+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .     .                      
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~----g~~Vtlv~~~~~il----------~-----~----------------------  290 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGL----KSDVHVFIRQKKVL----------R-----G----------------------  290 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeccccc----------c-----c----------------------
Confidence            35899999999999999999986    89999999876330          0     0                      


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                         +               -..+...+.+.+++.| ++++.++++++++.              
T Consensus       291 -------------------~---------------d~~~~~~l~~~L~~~G-V~i~~~~~v~~i~~--------------  321 (558)
T PLN02546        291 -------------------F---------------DEEVRDFVAEQMSLRG-IEFHTEESPQAIIK--------------  321 (558)
T ss_pred             -------------------c---------------CHHHHHHHHHHHHHCC-cEEEeCCEEEEEEE--------------
Confidence                               0               0223455666666777 99999999999965              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           +.++.+.+...++....+|. |.|.|......
T Consensus       322 -----~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        322 -----SADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             -----cCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence                 11234556665555455899 99999877663

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.24  E-value=0.0011  Score=66.70  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc-EEEeeE-EEecCCC-ch
Q 010225          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKL-VGADGGK-SR  248 (514)
Q Consensus       172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~-V~AdG~~-S~  248 (514)
                      .+.++..+.++++| |+|+.++.|++++.                      +.+++  .+|. ++.|+. |=|.|.. |+
T Consensus       210 ~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~v~~--~~g~~~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         210 KLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DGVTL--KDGEEEIPADTVVWAAGVRASP  264 (405)
T ss_pred             HHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------CcEEE--ccCCeeEecCEEEEcCCCcCCh
Confidence            35556667777777 99999999999965                      44554  4555 599999 9999954 44


Q ss_pred             hhhh
Q 010225          249 VREL  252 (514)
Q Consensus       249 vR~~  252 (514)
                      +-+.
T Consensus       265 ~~~~  268 (405)
T COG1252         265 LLKD  268 (405)
T ss_pred             hhhh
Confidence            4444

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.22  E-value=0.00038  Score=75.96  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~----G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK----GHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence            457999999999999999999996    9999999998865

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.20  E-value=0.013  Score=59.93  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      .++=|||+|+|+|++|..|-|-+.-+|-+|+|+|+.+.++.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG   43 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG   43 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence            46889999999999999999875556889999999987753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.20  E-value=0.00045  Score=72.35  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+||||||+|+++|..|++.    |++|+|+|+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~----G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA----GVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence            457999999999999999999996    9999999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.14  E-value=0.00051  Score=74.87  Aligned_cols=37  Identities=32%  Similarity=0.511  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+||||||+||++|..|++.    |++|+|||+.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~----G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA----GVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc----CCcEEEEeCCCCC
Confidence            468999999999999999999996    9999999999866

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.13  E-value=0.00049  Score=73.25  Aligned_cols=38  Identities=32%  Similarity=0.527  Sum_probs=34.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +..++|+||||+|.+|+++|..|+..    |++|+|+|++..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~----g~~VllLEaG~~   41 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDA----GLSVLVLEAGGP   41 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCC----CCeEEEEeCCCC
Confidence            45689999999999999999999964    999999999953

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.13  E-value=0.015  Score=61.85  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=52.5

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEe---CCC--cEEEeeE
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDL---SDG--TSLYAKL  239 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~g--~~~~ad~  239 (514)
                      ..++...+...|.+.+.+.| ++|+++++|++++.                    .++. +.|++   .+|  .++.|+.
T Consensus       123 g~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~  181 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQV  181 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCE
Confidence            36789999999999999998 99999999999986                    2232 33443   234  3699999


Q ss_pred             -EEecCCCch-hhhhhCC
Q 010225          240 -VGADGGKSR-VRELAGF  255 (514)
Q Consensus       240 -V~AdG~~S~-vR~~l~~  255 (514)
                       |.|.|.|+. +.+.++.
T Consensus       182 VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       182 VINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             EEECCCcchHHHHHhcCC
Confidence             999999986 4445554

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02785 Protein HOTHEAD

Probab=97.10  E-value=0.00059  Score=73.19  Aligned_cols=38  Identities=37%  Similarity=0.650  Sum_probs=33.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....||+||||||.+|+.+|..|++     +.+|+|||++..+
T Consensus        52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-----~~~VLllE~G~~~   89 (587)
T PLN02785         52 GDSAYDYIVVGGGTAGCPLAATLSQ-----NFSVLLLERGGVP   89 (587)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHhc-----CCcEEEEecCCCC
Confidence            3457999999999999999999999     5899999999743

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.08  E-value=0.0047  Score=64.74  Aligned_cols=36  Identities=25%  Similarity=0.618  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRL----GVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc
Confidence            35899999999999999999996    9999999988743

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.07  E-value=0.00056  Score=70.60  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+|+||||||+||++|..|+++    |++|+|+|+.+.++
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~----G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRA----GHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhC----CCeEEEeCCcCCCc
Confidence            37999999999999999999997    99999999999774

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.03  E-value=0.00078  Score=67.94  Aligned_cols=37  Identities=32%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|||||++|+.+|..|++.    |++|+|||+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL----GYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCC
Confidence            456899999999999999999996    9999999998865

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.96  E-value=0.00098  Score=70.15  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|||||++|+++|..|++.    |++|+|||+.+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~----g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRA----GHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence            347999999999999999999996    9999999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.96  E-value=0.001  Score=71.53  Aligned_cols=38  Identities=39%  Similarity=0.630  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+|+||||||+||++|+.|++.    |++|+|+|+.+.+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~----G~~V~v~e~~~~~  172 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRM----GHAVTIFEAGPKL  172 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            3456899999999999999999996    9999999999866

>TIGR01810 betA choline dehydrogenase

Probab=96.91  E-value=0.00084  Score=71.70  Aligned_cols=33  Identities=30%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      |+||||||.+|+.+|..|++.    | ++|+|||+++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~----~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSED----VSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccC----CCCeEEEEecCCC
Confidence            899999999999999999996    5 79999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.84  E-value=0.0094  Score=64.69  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      -+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~----G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTAL----GSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhC----CCeEEEEeccCcc
Confidence            4799999999999999999996    8999999998743

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.83  E-value=0.0014  Score=63.94  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|||+||||..+|..|.+..  .+++|.|+|+.+.+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~--~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRH--PNAHVDIFEKLPVP   57 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcC--CCCeeEeeecCCcc
Confidence            38999999999999999888731  37999999999977

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.79  E-value=0.01  Score=63.10  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~----g~~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGI----VRHVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhc----CcEEEEEEeCC
Confidence            35899999999999999999986    89999999665

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=96.78  E-value=0.01  Score=58.97  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++++.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~----~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEECC
Confidence            35899999999999999999996    89999999876

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.75  E-value=0.015  Score=56.99  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|++|+-+|..|++.    +.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~----~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRI----AKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhh----cCEEEEEEeCc
Confidence            35899999999999999999986    88999999865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK13984 putative oxidoreductase; Provisional

Probab=96.72  E-value=0.0019  Score=70.16  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+|+|||+|++|+++|..|++.    |++|+|||+.+.+
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~----G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM----GYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            3467899999999999999999996    9999999998865

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.71  E-value=0.0034  Score=63.15  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhh
Q 010225          393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI  431 (514)
Q Consensus       393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~  431 (514)
                      .++.++|+..-.--|..|.-+..|...++.++..+...+
T Consensus       337 pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~  375 (376)
T TIGR03862       337 PGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL  375 (376)
T ss_pred             CCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999998887754

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.64  E-value=0.01  Score=60.19  Aligned_cols=49  Identities=20%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                      ...+.+.+++.+ ++++.+++|++++.                      +  .+.+.+|.++.+|+ |.|.|...
T Consensus       194 ~~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       194 RRLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence            345556666666 99999999998853                      2  46667888999999 99999654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.62  E-value=0.018  Score=58.27  Aligned_cols=104  Identities=28%  Similarity=0.367  Sum_probs=80.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      .....|++||||-.|+-+|..|.-.    +++|++|++.+.+-                   ++   ++           
T Consensus       211 ~~~~~vV~vG~G~ig~Evaa~l~~~----~~~VT~V~~e~~~~-------------------~~---lf-----------  253 (478)
T KOG1336|consen  211 QLGGKVVCVGGGFIGMEVAAALVSK----AKSVTVVFPEPWLL-------------------PR---LF-----------  253 (478)
T ss_pred             ccCceEEEECchHHHHHHHHHHHhc----CceEEEEccCccch-------------------hh---hh-----------
Confidence            3466799999999999999988884    89999999988550                   00   00           


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                                                           -..+.+.+.+..++.+ ++++.++.+.+++.           +
T Consensus       254 -------------------------------------~~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~-----------~  284 (478)
T KOG1336|consen  254 -------------------------------------GPSIGQFYEDYYENKG-VKFYLGTVVSSLEG-----------N  284 (478)
T ss_pred             -------------------------------------hHHHHHHHHHHHHhcC-eEEEEecceeeccc-----------C
Confidence                                                 1224455666667777 99999999999976           1


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      +       .++.+.|.+.||+++.||+ |...|+.+.+
T Consensus       285 ~-------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  285 S-------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             C-------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence            1       3477889999999999999 9999987655

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.60  E-value=0.0022  Score=70.17  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             cCCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           49 FTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        49 ~~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ++.......|+|||.||+||++|-.|-+.    |+-|+|+||.+.++
T Consensus      1779 pp~~rtg~~vaiigsgpaglaaadqlnk~----gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKA----GHTVTVYERSDRVG 1821 (2142)
T ss_pred             CcccccCcEEEEEccCchhhhHHHHHhhc----CcEEEEEEecCCcC
Confidence            33344568999999999999999999998    99999999999773

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.56  E-value=0.0027  Score=66.59  Aligned_cols=40  Identities=35%  Similarity=0.539  Sum_probs=36.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....||.||||||-||+.+|..|++.   ..++|+|+|++..+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn---~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN---PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC---CCceEEEEecCCCC
Confidence            45679999999999999999999997   47999999998876

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=96.55  E-value=0.0049  Score=61.63  Aligned_cols=143  Identities=16%  Similarity=0.122  Sum_probs=73.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      ......|+|||||.++.-++..|.+.+  ...+|+++=|+......      +..........|...+.+-.+..  +..
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~--~~~~V~~i~R~~~~~~~------d~s~f~ne~f~P~~v~~f~~l~~--~~R  256 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRG--PEAKVTWISRSPGFFPM------DDSPFVNEIFSPEYVDYFYSLPD--EER  256 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH---TTEEEEEEESSSS-EB----------CCHHGGGSHHHHHHHHTS-H--HHH
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCC--CCcEEEEEECCCccCCC------ccccchhhhcCchhhhhhhcCCH--HHH
Confidence            456789999999999999999998852  12589999998865211      11111122455665555554432  222


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHH----HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCc
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL----HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l----~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~  207 (514)
                      .........           .         ..  -.|+...+    ...+.+.+...+.++++.+++|++++.       
T Consensus       257 ~~~l~~~~~-----------~---------ny--~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~-------  307 (341)
T PF13434_consen  257 RELLREQRH-----------T---------NY--GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ-------  307 (341)
T ss_dssp             HHHHHHTGG-----------G---------TS--SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE-------
T ss_pred             HHHHHHhHh-----------h---------cC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE-------
Confidence            211100000           0         00  01233322    222233444444589999999999987       


Q ss_pred             ccCCCCccccccccCCeeEEEeCC-----CcEEEeeE-EEecCC
Q 010225          208 SVDSTPSATTLFTKGHLAKLDLSD-----GTSLYAKL-VGADGG  245 (514)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~-----g~~~~ad~-V~AdG~  245 (514)
                                  +.++.+.+.+.+     ..++.+|. |.|+|.
T Consensus       308 ------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  308 ------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             ------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred             ------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence                        122478877765     23699999 999994

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.35  E-value=0.023  Score=60.41  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||..|+-+|..|++.    +.+|+|+++++.
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~----~~~Vtlv~~~~~  385 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGI----VKHVTVLEFAPE  385 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEECcc
Confidence            35899999999999999999996    899999987763

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.09  E-value=0.02  Score=57.77  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~   92 (514)
                      ..|+|||+|+.|+-+|..|.+.    |.+ |+|+++.+
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~----g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLL----GAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCCeEEEEeecc
Confidence            4799999999999999999875    776 99998765

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.96  E-value=0.022  Score=57.59  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=36.0

Q ss_pred             CCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          184 TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       184 ~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      .+ +++++++.|+.++.                      ..-+|.+.+|+++.++. |.|+|. |+.
T Consensus       140 ~g-Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs-~~~  182 (478)
T KOG1336|consen  140 KG-IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS-SAK  182 (478)
T ss_pred             cC-ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC-ccc
Confidence            35 99999999999987                      55678888999999999 999999 443

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.93  E-value=0.017  Score=61.49  Aligned_cols=106  Identities=21%  Similarity=0.367  Sum_probs=76.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      ...+|||||.-||=+|..|.+.    |.+|+|++=.+..                       ++        ..+...  
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~----Gm~~~Vvh~~~~l-----------------------Me--------rQLD~~--  188 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDL----GMEVTVVHIAPTL-----------------------ME--------RQLDRT--  188 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhC----CCceEEEeecchH-----------------------HH--------HhhhhH--
Confidence            3579999999999999999996    9999999866532                       00        011110  


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                           -...|...+++.| ++++.++..+.+..               
T Consensus       189 -------------------------------------ag~lL~~~le~~G-i~~~l~~~t~ei~g---------------  215 (793)
T COG1251         189 -------------------------------------AGRLLRRKLEDLG-IKVLLEKNTEEIVG---------------  215 (793)
T ss_pred             -------------------------------------HHHHHHHHHHhhc-ceeecccchhhhhc---------------
Confidence                                                 1145666667777 99999887777754               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                           .+....++|+||..+.||+ |-|+|+.-.  +.+..|+.
T Consensus       216 -----~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGla  254 (793)
T COG1251         216 -----EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLA  254 (793)
T ss_pred             -----CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcC
Confidence                 3466789999999999999 999997543  33444443

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.78  E-value=0.75  Score=48.64  Aligned_cols=33  Identities=30%  Similarity=0.281  Sum_probs=29.2

Q ss_pred             cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225          392 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  429 (514)
Q Consensus       392 ~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~  429 (514)
                      -.++.|+|+.+|+     |.|+..++..+..+|+.|.+
T Consensus       458 i~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~  490 (492)
T TIGR02733       458 VKGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA  490 (492)
T ss_pred             CCCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence            3689999999876     89999999999999998864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=95.73  E-value=0.038  Score=55.09  Aligned_cols=52  Identities=13%  Similarity=0.020  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCc
Q 010225          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKS  247 (514)
Q Consensus       173 l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S  247 (514)
                      +..+..+...+.+ +++..++.|..+..                      ..+.+...||+  ++.+-+ |-|+|...
T Consensus       275 l~~yae~~f~~~~-I~~~~~t~Vk~V~~----------------------~~I~~~~~~g~~~~iPYG~lVWatG~~~  329 (491)
T KOG2495|consen  275 LVEYAENQFVRDG-IDLDTGTMVKKVTE----------------------KTIHAKTKDGEIEEIPYGLLVWATGNGP  329 (491)
T ss_pred             HHHHHHHHhhhcc-ceeecccEEEeecC----------------------cEEEEEcCCCceeeecceEEEecCCCCC
Confidence            3444455555556 99999999999954                      66777777775  688899 99999543

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=95.67  E-value=0.047  Score=53.70  Aligned_cols=36  Identities=14%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +...+|||||..||-++.--.+.    |-+|+++|-.+..
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rL----GseVT~VEf~~~i  246 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRL----GSEVTVVEFLDQI  246 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhc----CCeEEEEEehhhh
Confidence            35799999999999999999998    9999999977654

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.63  E-value=0.25  Score=48.13  Aligned_cols=37  Identities=32%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....||.+|||||-.|++.|...+.+    |.+|.|+|..-
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~----GAkv~l~E~~f   53 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASH----GAKVALCELPF   53 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhc----CceEEEEecCC
Confidence            45689999999999999999999997    99999999773

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=95.62  E-value=0.055  Score=56.47  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||||..|+-+|..|.+.    |.+|+|++++.
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~----G~~Vtlv~~~~  305 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRL----GAEVHCLYRRT  305 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEeecC
Confidence            35899999999999999999997    89999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.57  E-value=0.016  Score=51.01  Aligned_cols=32  Identities=34%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|+|||..|.++|..|++.    |++|+|+.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~----g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN----GHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC----TEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHc----CCEEEEEeccH
Confidence            589999999999999999996    99999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.56  E-value=0.013  Score=54.95  Aligned_cols=64  Identities=22%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA  126 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl  126 (514)
                      ++++|||+|..|.++|..|.+.    |++|+++|+++.....-   ............+......|+++|+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~----g~~Vv~Id~d~~~~~~~---~~~~~~~~~v~gd~t~~~~L~~agi   64 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE----GHNVVLIDRDEERVEEF---LADELDTHVVIGDATDEDVLEEAGI   64 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC----CCceEEEEcCHHHHHHH---hhhhcceEEEEecCCCHHHHHhcCC
Confidence            3699999999999999999996    99999999988552110   0001333445566667788888875

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.46  E-value=0.083  Score=55.29  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ..+|+|||||..|+-+|..|.+.    |. +|+|+++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~----G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRL----GAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence            46899999999999999999986    77 899999865

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.25  E-value=0.022  Score=51.35  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .|.|||+|..|...|..++.+    |++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA----GYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT----TSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence            489999999999999999997    999999999774

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=0.017  Score=55.57  Aligned_cols=34  Identities=38%  Similarity=0.542  Sum_probs=31.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      ..+||.+|||||-+||++|-..++.    |.+|.++|-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~----G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADL----GAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhc----CCcEEEEee
Confidence            3579999999999999999999998    999999996

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=94.94  E-value=0.029  Score=57.57  Aligned_cols=41  Identities=34%  Similarity=0.503  Sum_probs=31.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      |+.+|||+|+|-|..-+.+|..|++.    |.+|+.+|+++..+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~----GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRS----GKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhc----CCEEEecCCCCCcCC
Confidence            35689999999999999999999997    999999999998763

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=94.80  E-value=2.1  Score=43.84  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             HHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCC-----CCCCce--EEeChhhHHHHHHcCCcHHH
Q 010225           69 ALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED-----PPDPRV--STVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        69 ~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ++|+.|+++    |++|+|+|+.+.++.........     ...+.-  ....+...++++++|+...+
T Consensus         1 ~AA~~L~~~----G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~   65 (419)
T TIGR03467         1 SAAVELARA----GARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRL   65 (419)
T ss_pred             ChHHHHHhC----CCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhh
Confidence            478999996    99999999999887554322111     111111  12346778888888875543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=94.78  E-value=0.14  Score=50.96  Aligned_cols=64  Identities=23%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC--Cc
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG--KS  247 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~--~S  247 (514)
                      ..|.++-.+.+++.| |.|+-|..|.++..                    .-..+.+.+.||.++..|+ |.|.|.  +|
T Consensus       393 eyls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  393 EYLSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HHHHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            345667777787766 99999999999976                    3466888999999999999 999995  55


Q ss_pred             hhhhhhCC
Q 010225          248 RVRELAGF  255 (514)
Q Consensus       248 ~vR~~l~~  255 (514)
                      -+...-|.
T Consensus       452 ela~~sgL  459 (659)
T KOG1346|consen  452 ELAEASGL  459 (659)
T ss_pred             hhcccccc
Confidence            55444443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=94.43  E-value=0.23  Score=52.15  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=28.4

Q ss_pred             CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc
Q 010225          393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV  433 (514)
Q Consensus       393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~  433 (514)
                      .+|+.+||+++.  |   .-+..|+.++..+|..|.+.+..
T Consensus       431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g  466 (471)
T PRK12810        431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG  466 (471)
T ss_pred             CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999872  1   13567999999999999988764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.16  E-value=0.062  Score=46.77  Aligned_cols=31  Identities=26%  Similarity=0.567  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      |+|+|+|-.|+..|..|++.    |++|.++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC----CCceEEEEccc
Confidence            78999999999999999996    99999999876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.15  E-value=0.065  Score=53.03  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|..|.++|..|++.    |++|+++.|+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~----g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARA----GFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence            35799999999999999999997    99999998865

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.97  E-value=0.081  Score=55.80  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|++|+++|..|++.    |++|+++|+.+
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~----G~~V~~~d~~~   49 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLEL----GARVTVVDDGD   49 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            34799999999999999999985    99999999765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.93  E-value=0.07  Score=52.01  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .|.|||+|..|...|..|+++    |++|+++|+.+..
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA----GVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC----CCEEEEEECCHHH
Confidence            799999999999999999997    9999999988744

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.88  E-value=0.063  Score=56.25  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .|+|||.|++|+++|..|.+.    |++|+++|++..+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~----G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ----GWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC----CCEEEEECCCCch
Confidence            589999999999999999996    9999999988754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.85  E-value=0.058  Score=53.22  Aligned_cols=33  Identities=36%  Similarity=0.619  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||+|..|.++|..|++.    |++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~----G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA----GHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC----CCeeEEEeCCHH
Confidence            699999999999999999996    999999998874

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.82  E-value=0.057  Score=48.88  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++|+|||.|-.||.+|..|++.    |++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~----G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK----GHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT----TSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhC----CCEEEEEeCChH
Confidence            3699999999999999999996    999999998874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.63  E-value=0.071  Score=51.14  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+.+.|+|||||-+|++.|..+.+.-  ..-+|.|+|....
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl--~~g~vgIvep~e~   75 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKL--GSGSVGIVEPAED   75 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhc--CCCceEEecchhh
Confidence            456799999999999999999888741  1237999997763

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.57  E-value=0.098  Score=51.63  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|||+|..|...|..++.+    |++|+++|..+..
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~a----G~~V~l~D~~~~~   42 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAH----GLDVVAWDPAPGA   42 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999988743

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.49  E-value=0.11  Score=42.08  Aligned_cols=35  Identities=31%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +...|+|||||..|..-+..|.+.    |-+|+|+.+..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~----gA~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEA----GAKVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCC----TBEEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCch
Confidence            356899999999999999999997    99999998763

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.34  E-value=0.097  Score=51.22  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||+|..|...|..|++.    |++|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~----G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA----GYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            4699999999999999999996    999999998763

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.31  E-value=0.087  Score=55.23  Aligned_cols=36  Identities=25%  Similarity=0.546  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASL----GSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCCC
Confidence            35899999999999999999996    8999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.31  E-value=0.093  Score=51.71  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++|+|||+|..|...|..|++.    |.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARA----GLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhC----CCCeEEEEech
Confidence            35799999999999999999997    89999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.13  E-value=0.099  Score=51.04  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|||+|..|.++|..|++.    |++|+++|+++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~----G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH----GFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCH
Confidence            4699999999999999999996    99999999876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.96  E-value=0.16  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEc
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID   89 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE   89 (514)
                      ....|+|||||.+|...|..|.+.    |.+|+||.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~----ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDT----GAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEc
Confidence            346899999999999999999986    99999995

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.80  E-value=0.11  Score=44.26  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=28.0

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++|+|+|+.+.++|..++..    |++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~l----g~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL----GFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC----TEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhC----CCEEEEEcCCcc
Confidence            58999999999999999998    999999998865

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=92.78  E-value=0.65  Score=50.03  Aligned_cols=60  Identities=17%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEE---eCCCc--EEEeeE-EEecC
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKL-VGADG  244 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~-V~AdG  244 (514)
                      ..+...|.+.+.+.+ ++|+.++.++++..+         .         ++..+.+.   ..+|+  .+.|+. |.|+|
T Consensus       126 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~~---------~---------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  186 (570)
T PRK05675        126 HALLHTLYQGNLKNG-TTFLNEWYAVDLVKN---------Q---------DGAVVGVIAICIETGETVYIKSKATVLATG  186 (570)
T ss_pred             HHHHHHHHHHHhccC-CEEEECcEEEEEEEc---------C---------CCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence            578889999888776 999999999999861         0         12333343   34565  588999 99999


Q ss_pred             CCchh
Q 010225          245 GKSRV  249 (514)
Q Consensus       245 ~~S~v  249 (514)
                      ..+.+
T Consensus       187 G~~~~  191 (570)
T PRK05675        187 GAGRI  191 (570)
T ss_pred             Ccccc
Confidence            98864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.68  E-value=0.41  Score=48.98  Aligned_cols=35  Identities=26%  Similarity=0.571  Sum_probs=28.0

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|||+|++|+++|..|.+..  .+.+++++.+....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~--~~~~i~i~~~~~~~   35 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL--LAAEITLIGREPKY   35 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC--CCCCEEEEeCCCCC
Confidence            589999999999999888853  35678877777654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.66  E-value=0.11  Score=50.76  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+|||+|..|...|..|++.    |++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS----GFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC----CCcEEEEeCCHH
Confidence            599999999999999999996    999999998863

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=92.64  E-value=0.35  Score=48.16  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      .+.....+|||||-+..+++......  +.+.+|.+|--.+..-               +.-.|-+.+++= .|-     
T Consensus       175 ~p~hvp~liigggtaAfaa~rai~s~--da~A~vl~iseepelP---------------YmRPPLSKELW~-~~d-----  231 (659)
T KOG1346|consen  175 LPKHVPYLIIGGGTAAFAAFRAIKSN--DATAKVLMISEEPELP---------------YMRPPLSKELWW-YGD-----  231 (659)
T ss_pred             CcccCceeEEcCCchhhhcccccccC--CCCceEEeeccCccCc---------------ccCCCcchhcee-cCC-----
Confidence            35567899999999887777665543  1367888887766541               111122211110 000     


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .   .....+.|....+.....|      ..+.++.++..+|...     . +|+|-+..|.+|+.|..           
T Consensus       232 p---n~~k~lrfkqwsGkeRsif------fepd~FfvspeDLp~~-----~-nGGvAvl~G~kvvkid~-----------  285 (659)
T KOG1346|consen  232 P---NSAKKLRFKQWSGKERSIF------FEPDGFFVSPEDLPKA-----V-NGGVAVLRGRKVVKIDE-----------  285 (659)
T ss_pred             C---ChhhheeecccCCccceeE------ecCCcceeChhHCccc-----c-cCceEEEeccceEEeec-----------
Confidence            0   0122222222222211111      2344577888877653     2 35699999999999965           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                                 ..-.|.++||.+|.+|- ..|+|..-+-
T Consensus       286 -----------~d~~V~LnDG~~I~YdkcLIATG~~Pk~  313 (659)
T KOG1346|consen  286 -----------EDKKVILNDGTTIGYDKCLIATGVRPKK  313 (659)
T ss_pred             -----------ccCeEEecCCcEeehhheeeecCcCccc
Confidence                       33456678999999999 9999987543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.61  E-value=0.16  Score=45.13  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+..|+|+|+|.+|..+|..|..+    |.+|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~l----Ga~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGL----GAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHT----T-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHC----CCEEEeccCCH
Confidence            357899999999999999999998    99999999765

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=92.49  E-value=0.13  Score=50.35  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|+|||+|..|...|..|+++    |++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~----G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART----GYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence            3699999999999999999996    999999998773

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.42  E-value=0.21  Score=46.02  Aligned_cols=34  Identities=29%  Similarity=0.309  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||||.+|..-+..|.+.    |.+|+|++...
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~----ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKA----GAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence            34899999999999999999997    99999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=92.30  E-value=0.15  Score=50.02  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|..|++.    |++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~----g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA----GHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCeEEEEECCh
Confidence            599999999999999999996    89999999854

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.29  E-value=0.14  Score=50.37  Aligned_cols=30  Identities=30%  Similarity=0.405  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      +|+|||+|..|.++|..|++.    |++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~----g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA----GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC----CCceEEEec
Confidence            599999999999999999996    899999998

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=92.19  E-value=0.49  Score=48.32  Aligned_cols=65  Identities=15%  Similarity=0.101  Sum_probs=50.2

Q ss_pred             EehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCC--cEEEeeE-EEec
Q 010225          168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKL-VGAD  243 (514)
Q Consensus       168 i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g--~~~~ad~-V~Ad  243 (514)
                      +.-..|.+.|.+.+++.| ++++.+.+|+++..                    .++.+. |...++  .+++||. |.|+
T Consensus       260 v~G~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAa  318 (419)
T TIGR03378       260 LLGIRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLAS  318 (419)
T ss_pred             CcHHHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEcc
Confidence            566889999999999998 89999999999986                    334343 554565  4799999 9999


Q ss_pred             CCC-ch-hhhhh
Q 010225          244 GGK-SR-VRELA  253 (514)
Q Consensus       244 G~~-S~-vR~~l  253 (514)
                      |.| |. +-+.+
T Consensus       319 Gaw~S~gL~a~l  330 (419)
T TIGR03378       319 GSFFSNGLVAEF  330 (419)
T ss_pred             CCCcCHHHHhhc
Confidence            999 75 43333

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.11  E-value=0.2  Score=52.29  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||+|.+|+++|..|++.    |++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~----G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKL----GAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            46799999999999999999996    99999999875

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.98  E-value=0.23  Score=45.58  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ....|+|||||-.|...|..|.+.    |.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~----ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKY----GAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEcCC
Confidence            345899999999999999999986    8999999854

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=91.97  E-value=0.15  Score=50.09  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=37.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+..+-|||+|+|||++|..|.|-+...|.++.|+|.-+..+
T Consensus        20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~G   62 (587)
T COG4716          20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAG   62 (587)
T ss_pred             cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccC
Confidence            4456799999999999999999997666789999999887664

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.87  E-value=0.28  Score=48.21  Aligned_cols=41  Identities=29%  Similarity=0.422  Sum_probs=36.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ...|||+|+|-|+.=+.++..|+..    |.+|+.||+++..++.
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~~----~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSWD----GKNVLHIDKNDYYGST   44 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhhc----CceEEEEeCCCccCcc
Confidence            3479999999999999999999996    9999999999988644

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.83  E-value=0.16  Score=49.50  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+|||+|..|...|..|++.    |++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~----g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA----GYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC----CCceEEEeCCHH
Confidence            699999999999999999996    899999998764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.80  E-value=0.27  Score=44.97  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=29.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|+|||+|.++.-+|+.|++.    |.+|+++=|.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~----g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKA----GKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTT----CSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhh----CCEEEEEecCC
Confidence            347899999999999999999997    89999998876

...

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.54  E-value=0.23  Score=49.00  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|..|.++|..|++.    |++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~----g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK----GLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            4699999999999999999996    89999999866

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.52  E-value=0.21  Score=50.00  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|..|.+.|..|++.    |++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~----G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAA----GADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhc----CCcEEEEecHH
Confidence            3699999999999999999996    99999999753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=91.49  E-value=1.6  Score=45.80  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ...|+|||||..|+-+|..+.+.    |. +|+|+++.+.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~----Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRL----GAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEEEecCc
Confidence            45899999999999999998886    74 7999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=91.48  E-value=0.31  Score=48.27  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~   94 (514)
                      +..+|+|||+|-.|.++|+.|+..    |+ +++|+|.++..
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~----gl~~i~LvDi~~~~   42 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLK----NLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCCch
Confidence            446899999999999999999885    75 89999988754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=91.48  E-value=0.27  Score=45.13  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...+|+|||+|-.|...|..|++.    |+ +++|+|.+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~----Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA----GIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEECCCE
Confidence            356899999999999999999997    88 699999884

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.35  E-value=0.25  Score=48.42  Aligned_cols=34  Identities=38%  Similarity=0.567  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|.|||+|..|...|..|+++    |++|+++|+.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~----G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAA----GMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence            3599999999999999999996    999999998763

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.34  E-value=0.28  Score=48.91  Aligned_cols=33  Identities=39%  Similarity=0.482  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|..|.+.|..|++.    |++|+++++.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~----G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASK----GVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            3699999999999999999996    99999999865

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=91.34  E-value=0.33  Score=41.79  Aligned_cols=35  Identities=40%  Similarity=0.528  Sum_probs=29.8

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+ |..|.++|+.|...+.  +-++.|+|...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCc
Confidence            37999999 9999999999999742  44799999886

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.34  E-value=0.23  Score=50.24  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|+|||+|.+|+.+|..|.+.    |.+|+++|++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l----Ga~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL----GATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            346799999999999999999997    88999999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=91.33  E-value=13  Score=39.03  Aligned_cols=65  Identities=14%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccC-CeeEEEeCCC---cEEEeeE-EEecCCC
Q 010225          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG---TSLYAKL-VGADGGK  246 (514)
Q Consensus       172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g---~~~~ad~-V~AdG~~  246 (514)
                      .+.+.|.+.+++.| ++|+.+++|++|+.+         .+.+      .. ..+.|.+.+|   .++.||. |.|...+
T Consensus       220 ~l~~pl~~~L~~~G-g~i~~~~~V~~I~~~---------~~~~------~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       220 YLTKPILEYIEARG-GKFHLRHKVREIKYE---------KSSD------GSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             hHHHHHHHHHHHCC-CEEECCCEEEEEEEe---------cCCC------CceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            35677888888877 899999999999861         1000      00 1234445443   4689999 9999977


Q ss_pred             chhhhhh
Q 010225          247 SRVRELA  253 (514)
Q Consensus       247 S~vR~~l  253 (514)
                       .+.+.+
T Consensus       284 -~~~~Ll  289 (474)
T TIGR02732       284 -GIKRLL  289 (474)
T ss_pred             -HHHhhC
Confidence             344444

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.31  E-value=1.8  Score=47.49  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .+|+|||||..|+-+|..+.+.    |. +|+++.+++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~----ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRH----GASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCCeEEEeEecCC
Confidence            5899999999999999888876    64 7999988753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.29  E-value=0.23  Score=40.86  Aligned_cols=32  Identities=31%  Similarity=0.570  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      |+|||.|..|..+|-.|.+.    +.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~----~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG----GIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT----TSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhC----CCEEEEEECCcH
Confidence            79999999999999999995    789999999873

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.26  E-value=0.25  Score=48.68  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~   93 (514)
                      +|.|||+|.+|.++|+.|++.    |  ..|.++|++..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~----g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLR----GLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHc----CCCCEEEEEECCch
Confidence            699999999999999999986    7  47999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.16  E-value=0.25  Score=49.20  Aligned_cols=32  Identities=31%  Similarity=0.561  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|..|.++|..|++.    |++|+++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~----g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK----KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC----CCeEEEEecCH
Confidence            599999999999999999996    89999999865

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.09  E-value=0.25  Score=50.37  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..-.|+|+|+|+.|+.+|..|+..    |.+|+++|.++.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~----Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQ----GARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECChh
Confidence            346899999999999999999986    889999998763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.06  E-value=0.22  Score=52.27  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..-+|+|+|+|++|+.++..++..    |.+|.++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~l----GA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSL----GAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            357899999999999999999887    889999998763

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=90.88  E-value=0.27  Score=52.81  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||.+|+-+|..|++.    |.+|+|+++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~----g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRY----ASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHcc----CCEEEEEEeCCc
Confidence            45899999999999999999986    899999998763

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=90.82  E-value=1.6  Score=42.81  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||-+.+--|+.|++.    +.+|+|+=|++..
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~----a~~Vtlv~r~~~~  178 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKI----AKKVTLVHRRDEF  178 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHh----cCeEEEEecCccc
Confidence            4999999999999999999997    7889999998855

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=90.79  E-value=0.39  Score=45.53  Aligned_cols=37  Identities=35%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .....++|+|||+.+..+|..++..    |++|+|+|.++.
T Consensus        98 ~p~~~L~IfGaG~va~~la~la~~l----Gf~V~v~D~R~~  134 (246)
T TIGR02964        98 PPAPHVVLFGAGHVGRALVRALAPL----PCRVTWVDSREA  134 (246)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHhcC----CCEEEEEeCCcc
Confidence            3567999999999999999999998    999999998765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.67  E-value=0.36  Score=47.66  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|.|||+|-.|.++|..|++.    |++|+++++..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~----G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASAN----GHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence            35799999999999999999996    99999999875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=90.49  E-value=0.32  Score=51.40  Aligned_cols=34  Identities=29%  Similarity=0.586  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||+|..|...|..|+++    |++|+|+|+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~----G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLA----GIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence            3699999999999999999996    999999998764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=90.45  E-value=0.19  Score=46.99  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=29.1

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|||||+||.++|-.|+++-  +.-+|+|+-..+..
T Consensus         2 fivvgggiagvscaeqla~~~--psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLE--PSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhC--CCCcEEEEeccHHH
Confidence            689999999999999999973  45678888877655

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.34  E-value=0.31  Score=50.21  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||.|-.|+.+|..|++.    |++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~----G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR----QKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC----CCEEEEEeCCHH
Confidence            4699999999999999999996    999999998764

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.24  E-value=0.39  Score=47.24  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .+|.|||+|..|+.+|+.|+..    |+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~----g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK----ELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCCC
Confidence            3699999999999999999986    65 8999998553

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.23  E-value=0.31  Score=48.62  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++|.|||.|=+||+.|..|++.    |++|+.+|.++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~----GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL----GHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence            3699999999999999999997    999999998873

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=90.13  E-value=0.27  Score=44.92  Aligned_cols=39  Identities=31%  Similarity=0.434  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.....|.|||||..|.-.|...+..    |++|.|+|++...
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~s----g~~V~l~d~~~~a   46 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATS----GLNVWLVDANEDA   46 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhc----CCceEEecCCHHH
Confidence            34456899999999999999999996    9999999998744

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=90.07  E-value=0.36  Score=41.16  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      +..|+|||+|-.|..+|..|++.    |+ +++|+|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~----Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS----GVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH----TTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh----CCCceeecCCcce
Confidence            35799999999999999999997    77 6999998763

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.92  E-value=0.55  Score=46.40  Aligned_cols=36  Identities=33%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~   93 (514)
                      ...+|+|||+|-+|.++|+.|+..    |+  .+.|+|.+..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~----~~~~el~L~D~~~~   42 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQ----GIADELVIIDINKE   42 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCCc
Confidence            446899999999999999999985    66  7999998654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=89.82  E-value=0.41  Score=50.61  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      -..|.|||+|..|...|..|+++    |++|+++|+.+..
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~a----G~~V~l~D~~~e~   42 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQA----GHTVLLYDARAGA   42 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            35699999999999999999996    9999999988753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.70  E-value=0.55  Score=41.66  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             CCCccEEEECCCH-HHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~-aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      -...+|+|||+|- +|..+|..|.+.    |.+|+++.|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~----g~~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR----NATVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC----CCEEEEEECCc
Confidence            4567999999995 699999999986    88999999763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.41  E-value=0.34  Score=49.97  Aligned_cols=33  Identities=36%  Similarity=0.537  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||.|-.|+.+|..|++.    |++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~----G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL----GHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc----CCeEEEEECCHH
Confidence            599999999999999999996    999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.41  E-value=0.39  Score=47.66  Aligned_cols=32  Identities=38%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|..|..+|..|++.    |++|+++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~----g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN----GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            699999999999999999996    89999999865

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=89.32  E-value=2.8  Score=45.26  Aligned_cols=44  Identities=7%  Similarity=0.022  Sum_probs=36.6

Q ss_pred             cCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          183 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       183 ~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      +++ ++++.+.+|+.+..                      ..-.|..+.|.++.+|- |.|+|....+
T Consensus        71 ~~~-i~L~~~~~v~~idr----------------------~~k~V~t~~g~~~~YDkLilATGS~pfi  115 (793)
T COG1251          71 ENG-ITLYTGEKVIQIDR----------------------ANKVVTTDAGRTVSYDKLIIATGSYPFI  115 (793)
T ss_pred             HcC-cEEEcCCeeEEecc----------------------CcceEEccCCcEeecceeEEecCccccc
Confidence            345 99999999999976                      45567778899999999 9999987655

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.25  E-value=0.36  Score=46.84  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||.|..|.++|..|++.    |++|+++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~----g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL----GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            599999999999999999996    89999999765

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.24  E-value=0.49  Score=47.19  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...|+|||+|-.|..+|..|+++    |+ +++|+|.+.
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a----Gvg~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA----GIGKLTIADRDY   58 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCc
Confidence            46799999999999999999998    77 799999886

>PRK04148 hypothetical protein; Provisional

Probab=89.16  E-value=0.34  Score=40.97  Aligned_cols=32  Identities=25%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|++||.| .|..+|..|++.    |++|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~----G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES----GFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC----CCEEEEEECCH
Confidence            579999999 999999999986    99999999887

>PRK12831 putative oxidoreductase; Provisional

Probab=89.14  E-value=0.41  Score=50.17  Aligned_cols=34  Identities=35%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||||.+|+-+|..|.+.    |.+|+|+++..
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~----Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRL----GAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCEEEEEeecC
Confidence            45899999999999999999997    88999999765

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=89.08  E-value=0.56  Score=40.01  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~   92 (514)
                      ....|+|||+|-+|-+++..|+..    |.+ |+|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCH
Confidence            356899999999999999999997    776 99999865

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=88.98  E-value=1.3  Score=47.03  Aligned_cols=34  Identities=29%  Similarity=0.370  Sum_probs=28.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|.+|.=.|..|++.    ..+|.+.=|..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~----a~~v~~s~R~~  216 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRV----AKKVYLSTRRG  216 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTT----SCCEEEECC--
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHh----cCCeEEEEecc
Confidence            46899999999999999999996    77898888765

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.96  E-value=0.51  Score=48.07  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|||.|+.|..+|..|+..    |.+|+++|.++.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~----Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGM----GARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhC----cCEEEEEeCChh
Confidence            455899999999999999999986    899999998773

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK06223 malate dehydrogenase; Reviewed

Probab=88.94  E-value=0.54  Score=46.31  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .+|+|||+|..|.++|+.|+..    |+ .|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~----~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALK----ELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEEECCCc
Confidence            4799999999999999999986    55 9999998663

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=88.92  E-value=0.41  Score=50.54  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|.|||+|..|...|..|+++    |++|+++|+.+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~a----G~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASA----GHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999997    9999999998743

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.79  E-value=0.36  Score=47.02  Aligned_cols=37  Identities=35%  Similarity=0.540  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..||+|||||-+|.-+|+-|+..    =-.|+|+|=.+..
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGi----v~hVtllEF~~eL  389 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEL  389 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhh----hheeeeeecchhh
Confidence            457999999999999999999975    3469999977644

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=88.76  E-value=0.6  Score=46.04  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+|+|||+|..|.++|..|++.    |+  +|.++++.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~----g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL----GLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc----CCCcEEEEEECCH
Confidence            4799999999999999999986    64  899998865

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.69  E-value=0.49  Score=47.11  Aligned_cols=41  Identities=32%  Similarity=0.421  Sum_probs=37.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      .+..+||||||-|..-..+|.+.++.    |.+|+-+|+++..+.
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrs----G~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRS----GSSVLHLDSNEYYGG   45 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhc----CCceEeccCccccCC
Confidence            45689999999999999999999997    999999999998753

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=88.60  E-value=0.56  Score=49.00  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++|+|||.|-+|+.+|..|++.+  .|++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g--~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKC--PDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC--CCCeEEEEECCHH
Confidence            36999999999999999999852  2588999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=88.25  E-value=0.7  Score=42.46  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ....|+|||.|-.|..+|..|++.    |. +++|+|.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~----Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA----GVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc----CCCeEEEecCCEE
Confidence            456899999999999999999998    76 7999998763

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.07  E-value=0.49  Score=48.23  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|.|||.|-.|+.+|..|+.     |++|+++|++...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-----G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-----NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-----CCcEEEEECCHHH
Confidence            59999999999999988885     8999999998743

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=88.04  E-value=0.67  Score=46.29  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...+|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a----Gvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA----GVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc----CCCeEEEEeCCc
Confidence            356899999999999999999997    77 899999875

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=87.95  E-value=0.47  Score=45.63  Aligned_cols=35  Identities=34%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+-+|+|||||.+|.-+|..+...    |-+|+|+|.+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl----gA~Vtild~n~  201 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL----GADVTILDLNI  201 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc----CCeeEEEecCH
Confidence            456899999999999999999987    89999999885

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=87.93  E-value=0.32  Score=40.90  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....+|.|||+|-+|.++|..|.+.    |+.|.-+..++
T Consensus         8 ~~~l~I~iIGaGrVG~~La~aL~~a----g~~v~~v~srs   43 (127)
T PF10727_consen    8 AARLKIGIIGAGRVGTALARALARA----GHEVVGVYSRS   43 (127)
T ss_dssp             ----EEEEECTSCCCCHHHHHHHHT----TSEEEEESSCH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence            4568999999999999999999997    99988776554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.92  E-value=0.47  Score=52.45  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|||+|..|...|..++.+    |++|+++|.++..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK----GVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4799999999999999999997    9999999988743

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=87.89  E-value=0.74  Score=44.13  Aligned_cols=36  Identities=31%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      ....|+|||+|-.|..+|..|++.    | -+++|+|.+..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~----GVg~itLiD~D~V   65 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART----GIGAITLIDMDDV   65 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc----CCCEEEEEeCCEe
Confidence            356899999999999999999997    7 47999998764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.57  E-value=0.71  Score=43.00  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             cEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.||| +|..|.++|..|++.    |++|+++.+++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~----G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA----GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC----CCEEEEEEcCH
Confidence            599997 699999999999996    89999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=87.40  E-value=0.59  Score=45.96  Aligned_cols=32  Identities=22%  Similarity=0.435  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|+|+|..|...|+.|+++    |.+|+++=|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~----g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA----GHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC----CCeEEEEecHH
Confidence            699999999999999999997    78888888776

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=87.16  E-value=0.63  Score=51.41  Aligned_cols=36  Identities=28%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      -..|+|||||..|...|+.++.+    |++|+++|.+...
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~  348 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASK----GTPIVMKDINQHS  348 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            35799999999999999999997    9999999998743

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=87.14  E-value=0.79  Score=45.16  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~   94 (514)
                      +|+|||+|-+|.++|+.|+..    |  ..+.|+|++...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~----g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ----GIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcch
Confidence            699999999999999999986    6  479999997643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.12  E-value=0.78  Score=44.91  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|+|||.|.+|.++|..|++.    |.+|+++++.+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~----Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL----GANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            356899999999999999999997    89999999885

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.05  E-value=0.73  Score=48.28  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-+|+|+|+|++|++++..+...    |.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l----GA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL----GAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            46899999999999999999987    88999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=87.01  E-value=0.94  Score=38.94  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .|+|||.|-.|..+|..|++.    |+ +++|+|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~----Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS----GVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCc
Confidence            489999999999999999997    76 6999998863

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=86.98  E-value=0.86  Score=40.24  Aligned_cols=33  Identities=30%  Similarity=0.514  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||-|-.|...|..|.+.    |++|.++++.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~----g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA----GYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT----TTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhc----CCeEEeeccch
Confidence            4699999999999999999996    99999999875

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=86.79  E-value=0.81  Score=40.93  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      +|+|||+|-.|...|..|++.    |+ +++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~----Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS----GVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCE
Confidence            489999999999999999997    77 599999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.75  E-value=0.82  Score=46.87  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|+|.|..|..+|..|+..    |.+|+++|.++.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~----Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL----GARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCch
Confidence            345899999999999999999987    899999998764

>PTZ00117 malate dehydrogenase; Provisional

Probab=86.74  E-value=0.95  Score=44.84  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~   94 (514)
                      +..+|+|||+|-.|.++|+.|+..    | ..+.|+|.+...
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~----~~~~l~L~Di~~~~   41 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQK----NLGDVVLYDVIKGV   41 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHC----CCCeEEEEECCCcc
Confidence            456899999999999999999986    6 579999987643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.74  E-value=0.74  Score=46.29  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=26.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      .|+|+|+||.||.++..++..    | -+|+++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~----Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL----GASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCHH
Confidence            699999999999997777776    5 46888887663

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=86.63  E-value=0.75  Score=45.15  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           58 VAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      |+|||+|-.|..+|+.|+..    |+ .|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~----~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK----ELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC----CCcEEEEEeCCCc
Confidence            68999999999999999985    65 9999998863

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.61  E-value=0.93  Score=44.07  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ..+|+|||+|-+|.++|+.|++.    |. +|+|++|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~----G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTL----GVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEECCCH
Confidence            35799999999999999999987    76 799999875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.10  E-value=0.67  Score=51.36  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|.|||||..|...|+.++.+    |++|+++|.++..
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~----G~~V~l~d~~~~~  370 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDK----GLKTVLKDATPAG  370 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhC----CCcEEEecCCHHH
Confidence            5799999999999999999996    9999999988743

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02256 arogenate dehydrogenase

Probab=86.10  E-value=1.3  Score=43.59  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....+|.|||.|-.|-++|..|.+.    |++|.++++..
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~----G~~V~~~d~~~   69 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQ----GHTVLATSRSD   69 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence            3456899999999999999999986    88999998764

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=86.07  E-value=1.2  Score=43.84  Aligned_cols=37  Identities=32%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||+|-+|.++|+.|+..+  ..-.+.|+|....
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~--~~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKG--LADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEeCCcc
Confidence            458999999999999999998852  1236999998763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.03  E-value=0.98  Score=41.84  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~----Gvg~i~lvD~D~   62 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS----GVGNLKLVDFDV   62 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCE
Confidence            356899999999999999999997    66 499999876

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=85.74  E-value=0.71  Score=51.06  Aligned_cols=35  Identities=40%  Similarity=0.577  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHhc-cCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~-~~~~~~g~~V~viE~~~~   93 (514)
                      -..|+|||||..|...|+.++ ++    |++|+++|..+.
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~----G~~V~l~d~~~~  344 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKA----GLPVRIKDINPQ  344 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHc----CCeEEEEeCCHH
Confidence            357999999999999999998 75    999999998763

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=85.48  E-value=1  Score=42.55  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ...+|+|||+|-.|..+|..|++.    |+ +++|+|.+..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~----Gvg~i~lvD~D~v   59 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAA----GVGNLTLLDFDTV   59 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEEeCCcc
Confidence            346899999999999999999998    54 6999998764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=85.44  E-value=0.96  Score=39.58  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-..++|+|-|-.|-.+|..|+..    |.+|+|.|.++
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~----Ga~V~V~e~DP   56 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGL----GARVTVTEIDP   56 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHT----T-EEEEE-SSH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhC----CCEEEEEECCh
Confidence            446799999999999999999997    99999999987

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=85.39  E-value=0.96  Score=44.13  Aligned_cols=34  Identities=32%  Similarity=0.540  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|.|||||..|.-.|..++..    |++|+++|.+..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~----G~~V~l~D~~~~   37 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALA----GYDVVLKDISPE   37 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhc----CCceEEEeCCHH
Confidence            4799999999999999999995    899999999864

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=85.36  E-value=1  Score=42.19  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc---EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~---~V~viE~~~   92 (514)
                      ..+|+|+|+|-+|..+|..|.+.    |.   +|.|++|..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~----G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA----GAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc----CcCcceEEEEeCCC
Confidence            45799999999999999999997    66   599999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=85.35  E-value=0.84  Score=44.56  Aligned_cols=32  Identities=22%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||.|..|..+|..|++.    |++|+++++.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~----G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA----GYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC----CCeEEEEcCCH
Confidence            489999999999999999996    99999999876

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=85.26  E-value=0.81  Score=50.49  Aligned_cols=34  Identities=35%  Similarity=0.593  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhc-cCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~-~~~~~~g~~V~viE~~~~   93 (514)
                      ..|+|||+|..|...|..++ ++    |++|+++|.++.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~----G~~V~l~d~~~~  339 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKA----GIPVRIKDINPQ  339 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence            47999999999999999988 55    999999998864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=85.23  E-value=0.65  Score=46.21  Aligned_cols=40  Identities=33%  Similarity=0.452  Sum_probs=36.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..|||+|+|-|..=+.++..|+..    |.+|+.+||++..+.-
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~----gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVD----GKKVLHIDRNDYYGGE   42 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeec----CcEEEEEeCCCCCCcc
Confidence            459999999999999999999996    9999999999987643

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=85.23  E-value=1.1  Score=45.51  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             CCccEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+||| .|..|.++|..|.++    |+.|+++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~----G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLS----GYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHC----CCeEEEeCCCc
Confidence            446799999 799999999999996    99999999753

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=85.19  E-value=1.2  Score=41.99  Aligned_cols=41  Identities=24%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCC-------CCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPL-------TKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~-------~~g~~V~viE~~~~   93 (514)
                      ....+|+|||+|-.|..++-.|++.+.       ..|.+++|+|.+..
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            356789999999999999999998621       01459999998763

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PLN02494 adenosylhomocysteinase

Probab=85.05  E-value=1.1  Score=46.24  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|+|.|..|..+|..|...    |.+|+++|+++.
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~----Ga~VIV~e~dp~  288 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAA----GARVIVTEIDPI  288 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCch
Confidence            356899999999999999999886    899999998874

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.01  E-value=0.97  Score=47.71  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|+|.|.+|++++..|.+.    |.+|++.|..+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~----G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF----GARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            4699999999999999998885    99999999653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=84.99  E-value=1.1  Score=43.56  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||.|-+|.++|..|+..    |.+|++++|..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~----G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSAL----GARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            46899999999999999999986    89999999876

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.86  E-value=0.92  Score=47.35  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~----g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE----NNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCcEEEEECCHH
Confidence            699999999999999999985    999999998764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=84.73  E-value=2.1  Score=33.08  Aligned_cols=34  Identities=32%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      ...+++|+|.|-+|..+|..|.+.   .+.+|.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~---~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADE---GGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence            345799999999999999999986   2578999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.73  E-value=1.2  Score=42.28  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...+|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAA----GVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCE
Confidence            356899999999999999999998    65 799999876

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.59  E-value=1.3  Score=46.19  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|+|+|.+|.++|..|++.    |.+|++.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~----G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKL----GANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence            4699999999999999999996    99999999765

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.46  E-value=1.1  Score=46.80  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|+|.|.+|.++|..|.+.    |++|++.|+++.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~----G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKL----GAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC----CCEEEEECCCCC
Confidence            3699999999999999999996    999999998753

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=84.35  E-value=1.6  Score=40.09  Aligned_cols=34  Identities=35%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|.|-.|..+|..|.+.    |.+|+++|++.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~----G~~Vvv~D~~~   61 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEE----GAKLIVADINE   61 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            45799999999999999999996    99999988653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.27  E-value=1.5  Score=45.73  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|.|.+|.++|..|.+     |.+|+|.|.+.
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-----g~~v~v~D~~~   38 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-----KYDVIVYDDLK   38 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-----CCEEEEECCCC
Confidence            3579999999999999999985     89999999654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=84.26  E-value=1.1  Score=48.19  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+-+|+|||.|..|-.+|..|.+.    |++|+++|+++.
T Consensus       416 ~~~hiiI~G~G~~G~~la~~L~~~----g~~vvvId~d~~  451 (558)
T PRK10669        416 ICNHALLVGYGRVGSLLGEKLLAA----GIPLVVIETSRT  451 (558)
T ss_pred             cCCCEEEECCChHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            356899999999999999999986    999999999874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=84.19  E-value=1.3  Score=44.60  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|..|++.    | .+|+|.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~----~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN----GDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC----CCceEEEEeCCH
Confidence            4799999999999999999996    6 8999999985

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=84.11  E-value=1.1  Score=43.79  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||.|..|..+|..|++.    |++|+++++.+.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~----G~~V~v~d~~~~   35 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQ----GHQLQVFDVNPQ   35 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            699999999999999999996    899999998763

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.98  E-value=1.6  Score=45.42  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|+|.|.+|.++|..|++.    |.+|+++|..+..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~----g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKN----GAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCc
Confidence            4799999999999999999996    9999999976643

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=83.98  E-value=1.6  Score=39.63  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             CccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|| |..|..+|..|++.    |.+|+++.|+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~----g~~V~l~~R~~   62 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE----GARVVLVGRDL   62 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            457999997 99999999999986    88999998654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=83.77  E-value=1.5  Score=43.12  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~   93 (514)
                      +|+|||+|-+|.++|+.|...    ++  .+.|+|....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~----~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALAL----GLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcc
Confidence            489999999999999999885    54  6999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=83.63  E-value=1.3  Score=43.27  Aligned_cols=33  Identities=27%  Similarity=0.516  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||.|..|...|..|++.    |++|.+++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~----g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKA----GYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHC----CCeEEEEcCCH
Confidence            3699999999999999999996    89999999875

>PRK08328 hypothetical protein; Provisional

Probab=83.56  E-value=1.4  Score=41.38  Aligned_cols=34  Identities=35%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~----Gvg~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAA----GVGRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCc
Confidence            46899999999999999999998    65 599998766

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=83.56  E-value=5.3  Score=43.76  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=28.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      ..+|+|||||..|+-+|..+.+.    | .+|+++++++.
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~----Ga~~Vt~v~rr~~  486 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRL----NAASVTCAYRRDE  486 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecCc
Confidence            35899999999999988877775    6 47999998753

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=83.45  E-value=1.7  Score=40.36  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||||.+++-=+..|.+.    |-+|+|+-..-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~----gA~VtVVap~i   58 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKK----GCYVYILSKKF   58 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCC
Confidence            346799999999999999999997    89999997554

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=83.41  E-value=17  Score=37.04  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....++..|||+|.|=+|.++.-.|-..    -++|+|+..+..+
T Consensus        50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts----~YdV~vVSPRnyF   90 (491)
T KOG2495|consen   50 KNGGKKKRVVVLGSGWGAISLLKKLDTS----LYDVTVVSPRNYF   90 (491)
T ss_pred             CCCCCCceEEEEcCchHHHHHHHhcccc----ccceEEeccccce
Confidence            3455778999999999999999888885    7899999987744

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=83.29  E-value=1.5  Score=41.14  Aligned_cols=34  Identities=29%  Similarity=0.414  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...|+|||.|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~----Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAA----GVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCE
Confidence            46899999999999999999998    66 699999876

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=83.19  E-value=1.6  Score=34.40  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC---cEEEEE-cCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH---LSVAII-DSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g---~~V~vi-E~~~   92 (514)
                      +|.|||+|=.|.+++..|.+.    |   .+|.++ ++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~----g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLAS----GIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHT----TS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCceeEEeeccCcH
Confidence            489999999999999999997    7   889966 7776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		4e-08
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		4e-08
3fmw_A	570	The Crystal Structure Of Mtmoiv, A Baeyer-Villiger		2e-06
2qa2_A	499	Crystal Structure Of Cabe, An Aromatic Hydroxylase		3e-06
3all_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		4e-05
3alk_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		6e-05
3v3n_A	378	Crystal Structure Of Tetx2 T280a: An Adaptive Mutan		7e-05
2y6r_A	398	Structure Of The Tetx Monooxygenase In Complex With		7e-05
4a6n_A	398	Structure Of The Tetracycline Degrading Monooxygena		7e-05
3alh_A	379	Higher Resolution And Native Structure Of 2-Methyl-		7e-05
2xdo_A	398	Structure Of The Tetracycline Degrading Monooxygena		7e-05
3gmc_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		1e-04
3p9u_A	378	Crystal Structure Of Tetx2 From Bacteroides Thetaio		3e-04
2xyo_A	399	Structural Basis For A New Tetracycline Resistance		4e-04
1bgn_A	394	P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cy		6e-04
2qa1_A	500	Crystal Structure Of Pgae, An Aromatic Hydroxylase		6e-04

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 409
           DA+ S  + FE+  R V   +E  V   S  H     A+++ + RV L GDAAHT+ P  
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           G G+N G G A+ L   +A  +   A  G   LL  YE ER+P  I  +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 409
           DA+ S  + FE+  R V   +E  V   S  H     A+++ + RV L GDAAHT+ P  
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           G G+N G G A+ L   +A  +   A  G   LL  YE ER+P  I  +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371

>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger Monooxygenase From The Mithramycin Biosynthetic Pathway In Streptomyces Argillaceus. Length = 570

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 79/217 (36%), Gaps = 42/217 (19%)
Query: 240 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-NKENYCAWQRFLPAGPIALLPIGDN 298
           VG DGG+S VR LA  +  G   +  A+I  V    +E    W+R               
Sbjct: 200 VGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPRRWER--------------- 244
Query: 299 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG---SVDMFSWFRGD 355
                                 D + +L    + G GP   S S+G   + D       D
Sbjct: 245 --------------------TPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLED 284
Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
              +       P  + +  S    F  + + A  Y S RV+L GDAAH   P+ GQG+N 
Sbjct: 285 LGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNT 344
Query: 416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
           G  DA  L   +A  +      G   LL  Y  ER P
Sbjct: 345 GLQDAVNLGWKLAARV---RGWGSEELLDTYHDERHP 378

>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From Angucycline Biosynthesis, Determined To 2.7 A Resolution Length = 499

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 39/217 (17%)
Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDN 298
           +VG DGG+S VR+ AGF   G S S+   +  +   +         +P G +   P+GD 
Sbjct: 158 VVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMSAPLGDG 217
Query: 299 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGSVDMFSWFRGDAT 357
              I+       A                       GP P + +++      +W R    
Sbjct: 218 VDRIIVCERGAPARRRT-------------------GPPPYQEVAA------AWQR---- 248
Query: 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 417
           L+ ++     P  V        F    +  + Y   RV+L GD+AH   P  GQG+N+  
Sbjct: 249 LTGQDISHGEPVWVS------AFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSV 302
Query: 418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 454
            D+  L   +A   AV +    A LL  Y  ER P  
Sbjct: 303 QDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVG 336

>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
           + +L L  G  L A L VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKAETTK-LDSWTRGKVALV 286
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 112/279 (40%), Gaps = 49/279 (17%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
           + +L L  G  L A L VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKLASERMVF--PLSLKHANNYVSKRV 395
           +  SS  +D+  W          E F  + P +++ A  +            +++   +V
Sbjct: 234 RG-SSVPIDLEVWV---------EMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKV 283
Query: 396 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 455
            L+GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P   
Sbjct: 284 ALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITD 337
Query: 456 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
              A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 338 RCQALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In Complex With Minocycline Length = 378

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 265 KELIHATLSFVGLATR--IFPLE----KPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 318
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 319 VDALILSDNLADG 331

>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The Substrate 7-Chlortetracycline Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx In Complex With Tigecycline Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
           + +L L  G  L A L VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx2 From Bacteroides Thetaiotaomicron Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
           + +L L  G  L A L VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 231
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 232 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 269
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 270 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 323 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 409

>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides Thetaiotaomicron With Substrate Analogue Length = 378

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   +  IGDAAH   P AGQGVN G 
Sbjct: 265 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 318
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 319 VDALILSDNLADG 331

>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance Mechanism Relying On The Tetx Monooxygenase Length = 399

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
           KE        V LA+   +FPL       + SKR   +  IGDAAH   P AGQGVN G 
Sbjct: 286 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 339
Query: 418 GDASTLSRIIAEG 430
            DA  LS  +A+G
Sbjct: 340 VDALILSDNLADG 352

>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116 Replaced By Ser (C116s) And Arg 269 Replaced By Thr (R269t), In Complex With Fad And 4-Hydroxybenzoic Acid Length = 394

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
           E    ++R  P G + LL      S+ +++  +P+  + C   +          +  Y  
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
            P  + +   S + F W    A L A    EV  ++V   S E+ + PL+          
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLTSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
           R+ L GDAAH V P   +G+NL   D STL R++ +        G   LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330

>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis Length = 500

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 82/218 (37%), Gaps = 45/218 (20%)
Query: 237 AKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG 296
           A LVG DGG+S VR+ AGF   G + +    +  ++  +         LP G + + P+ 
Sbjct: 155 AYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMVGPLP 214
Query: 297 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF-SWFRGD 355
              + I+                           + G  P  +       ++  +W R  
Sbjct: 215 GGITRII-------------------------VCERGTPPQRRETPPSWHEVADAWKR-- 247
Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
             L+  +     P  V        F  + +    Y   RV+L GD+AH   P  GQG+N 
Sbjct: 248 --LTGDDIAHAEPVWVS------AFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNT 299
Query: 416 GFGDASTLSRIIAEGIAVGADI-GEAS--LLKKYEAER 450
              DA  L      G  +GA + G A+  LL  Y +ER
Sbjct: 300 SIQDAVNL------GWKLGAVVNGTATEELLDSYHSER 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-108
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	4e-28
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	3e-26
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	3e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	3e-26
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	7e-21
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	8e-20
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	9e-20
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	8e-04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	1e-19
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	1e-04
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	8e-18
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	4e-17
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-16
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	6e-16
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	1e-12
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-12
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	8e-12
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-06
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	1e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	3e-08
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-05
3dme_A	369	Conserved exported protein; structural genomics, P	2e-04
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	4e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	5e-04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	9e-04

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  326 bits (837), Expect = e-108
 Identities = 80/463 (17%), Positives = 149/463 (32%), Gaps = 71/463 (15%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
            D+  DV + G G+ G  LA  L      +   V +++              +       
Sbjct: 3   TDNHIDVLINGCGIGGAMLAYLLGR----QGHRVVVVEQAR----------RERAINGAD 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
            + PA I   +  G    V +       +++V+   G     +N   V+      ++  +
Sbjct: 49  LLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH-DGELLRYFNYSSVDARGYFILMPCE 107

Query: 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
            L   +L  +      + ++ +R+ ++                         + ++ L+D
Sbjct: 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDER------------------HAIDQVRLND 149

Query: 232 GTSLYAKL-VGADGGKSRVRE-LAGFKTTGWSYSQNAIICTVEHNKE-NYCAWQRFLPAG 288
           G  L  ++ VGADG  S VR  L         Y    ++ T                  G
Sbjct: 150 GRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDSQG 209

Query: 289 PIA-LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 347
            +A   PIG + + +V +   ++A +  +    + ++                       
Sbjct: 210 GLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQRF----------------- 252

Query: 348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 407
                         +        V   S     P+   + + Y +  V ++GDA H VHP
Sbjct: 253 ------------VGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHP 300

Query: 408 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 467
           + GQG+NL   DAS L+  +   +     +     L  Y+AER P N  +++       +
Sbjct: 301 ITGQGMNLAIEDASALADALDLALRDACALE--DALAGYQAERFPVNQAIVSYGHALATS 358

Query: 468 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 510
                     +   A  G+           SY     R P PL
Sbjct: 359 LEDR-QRFAGVFDTALQGSSRTPEALGGERSYQPV--RSPAPL 398

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score =  117 bits (295), Expect = 4e-28
 Identities = 76/450 (16%), Positives = 131/450 (29%), Gaps = 90/450 (20%)

Query: 50  TNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP-------ALG------ 95
             ++   DV +VG G  G+  A  L+     K  L V IID          A G      
Sbjct: 3   KYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTL 62

Query: 96  --------------------KSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135
                                      ++    R +   P T+            Q    
Sbjct: 63  ESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIE 122

Query: 136 AYF-DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSR 194
               D +     T +   +        EI     E+   +   ++    +E + T     
Sbjct: 123 RRILDSIAEISDTRIKV-ERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFG 181

Query: 195 LTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK-LVGADGGKSRVRELA 253
             +   L  S+  + +   +   L         +  +  +++ K ++G DGG S VR   
Sbjct: 182 HKTENGLFRSNLQTQEEEDANYRLPEGK-----EAGEIETVHCKYVIGCDGGHSWVRRTL 236

Query: 254 GFKTTGWSYSQNAIICTVEHNKE-----NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNP 308
           GF+  G        +             + CA      +G I ++P  +N       +  
Sbjct: 237 GFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSA-ESGSIMIIPRENNLVRFYVQLQA 295

Query: 309 KD----ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 364
           +       D      +  +             HP +     +D F+ +            
Sbjct: 296 RAEKGGRVDRTKFTPEVVIANAKKIF------HPYTFDVQQLDWFTAYH----------- 338

Query: 365 EVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 423
                      +R+           +   +RV + GDA HT  P AGQG+N    D   L
Sbjct: 339 ---------IGQRV--------TEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNL 381

Query: 424 SRIIAEGIAVGADIGEASLLKKYEAERKPA 453
              +   +   A      +LK YE ER+P 
Sbjct: 382 GWKLGLVLTGRAK---RDILKTYEEERQPF 408

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score =  110 bits (278), Expect = 3e-26
 Identities = 59/281 (20%), Positives = 85/281 (30%), Gaps = 51/281 (18%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDN 298
           +VG DGG+S VR+ AGF   G S S+   +  +   +         +P G +   P+GD 
Sbjct: 158 VVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMSAPLGDG 217

Query: 299 FSNIVWTMNPKDASDCKS-MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 357
              I+       A          +                            S F     
Sbjct: 218 VDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHG-------EPVWVSAFG---- 266

Query: 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 417
                              R          + Y   RV+L GD+AH   P  GQG+N+  
Sbjct: 267 ----------------DPARQ--------VSAYRRGRVLLAGDSAHVHLPAGGQGMNVSV 302

Query: 418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIVMMAVLDGFQKAYSVDFGPL 475
            D+  L   +A   AV +    A LL  Y  ER P    ++M     G       +  PL
Sbjct: 303 QDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFLSGDEMQPL 359

Query: 476 N--ILRAAAFHGAQY-----ISPLKRNIISYASGEQRLPLP 509
              +     +          +S L    I Y       PL 
Sbjct: 360 RDVLSELIRYDEVSRHLAGMVSGLD---IRYEVDGGDHPLL 397

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 46 KQSFTNNDDQYDVAVVGGGMVGMALACSLA 75
               ++     V VVG G  G+ LA  L 
Sbjct: 3  HHHHHHHRSDASVIVVGAGPAGLMLAGELR 32

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score =  110 bits (278), Expect = 3e-26
 Identities = 55/281 (19%), Positives = 87/281 (30%), Gaps = 51/281 (18%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDN 298
           LVG DGG+S VR+ AGF   G + +    +  ++  +         LP G + + P+   
Sbjct: 157 LVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMVGPLPGG 216

Query: 299 FSNIVWTMNPKDASDCKS-MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 357
            + I+           ++  +  +                            S F     
Sbjct: 217 ITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHA-------EPVWVSAFG---- 265

Query: 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 417
                            + R            Y   RV+L GD+AH   P  GQG+N   
Sbjct: 266 ----------------NATRQ--------VTEYRRGRVILAGDSAHIHLPAGGQGMNTSI 301

Query: 418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIV-------MMAVLDGFQKAY 468
            DA  L   +    AV        LL  Y +ER      ++       ++ +     +  
Sbjct: 302 QDAVNLGWKLG---AVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPL 358

Query: 469 SVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 509
                 L      A H A  +S L+   I+Y  G    PL 
Sbjct: 359 RDVLTELIQYGEVARHLAGMVSGLE---ITYDVGTGSHPLL 396

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 46 KQSFTNNDDQYDVAVVGGGMVGMALACSLA 75
               ++     V VVG G  GM LA  L 
Sbjct: 2  HHHHHHHRSDAAVIVVGAGPAGMMLAGELR 31

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 54/218 (24%), Positives = 72/218 (33%), Gaps = 40/218 (18%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDN 298
            VG DGG+S VR LA  +  G   +  A+I  V   +          P G + L    + 
Sbjct: 199 GVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPRRWERTPDGILVLAFPPEG 258

Query: 299 FSNIVWTMNPKD---ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 355
                W+ +      A+D   +  +D    +                   V   S F   
Sbjct: 259 GLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRGTPLTLTEP------VSWLSRFG-- 310

Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
                              + R         A  Y S RV+L GDAAH   P+ GQG+N 
Sbjct: 311 ------------------DASRQ--------AKRYRSGRVLLAGDAAHVHFPIGGQGLNT 344

Query: 416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
           G  DA  L   +A   A     G   LL  Y  ER P 
Sbjct: 345 GLQDAVNLGWKLA---ARVRGWGSEELLDTYHDERHPV 379

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 90.5 bits (225), Expect = 8e-20
 Identities = 65/427 (15%), Positives = 110/427 (25%), Gaps = 114/427 (26%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           +AVVGG + G+  A  L        + V + + +P                         
Sbjct: 8   IAVVGGSISGLTAALMLRD----AGVDVDVYERSP------------------------- 38

Query: 118 ISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLG-------------YTKYNARDVNKEIL 164
                  G    +          +      G+                      V     
Sbjct: 39  -QPLSGFGTG--IVVQPEL----VHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPA 91

Query: 165 GCVVEN-KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 223
                +   ++  L                         S   + +        +     
Sbjct: 92  DWRFTSYDSIYGGLY--------------ELFGPERYHTSKCLVGLSQDSETVQMRF--- 134

Query: 224 LAKLDLSDGTSLYAKLV-GADGGKSRVRE-LAGFKTTGWSYSQNAIICTVEHNKENYCAW 281
                 SDGT   A  V GADGG S VR+ L G + T   Y+              Y  W
Sbjct: 135 ------SDGTKAEANWVIGADGGASVVRKRLLGIEPT---YA-------------GYVTW 172

Query: 282 QRFL-PAGPIALLPIGDNFSNIVWTMNPK-----------DASDCKSMNEDDFVKILNHA 329
            R +   G +A            + +              + ++   +N   +  +    
Sbjct: 173 -RGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGP 231

Query: 330 LDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKL---ASERMVFPLSLK 385
                    + I   +    +              E +      L   AS   V  ++  
Sbjct: 232 DLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADA 291

Query: 386 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 445
             +  V  RV+LIGDAA T  P A  G      DA TL+ +  +      D+  +  L+ 
Sbjct: 292 TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK----NHDLRGS--LQS 345

Query: 446 YEAERKP 452
           +E  +  
Sbjct: 346 WETRQLQ 352

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 91.5 bits (227), Expect = 9e-20
 Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 36/224 (16%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCAWQRFLPAGPIALL 293
           +VG DG +S VR   G +  G S +Q   +  V    +        A Q     G + ++
Sbjct: 203 VVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQS--EQGNVLII 260

Query: 294 PIGDNFSNIVW----TMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF 349
           P         +     ++  +    +++  +  +      L      HP  +   +V  +
Sbjct: 261 PREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVL------HPYKLEVKNVPWW 314

Query: 350 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLA 409
           S +             +  R+      +    +      +    RV + GDA HT  P A
Sbjct: 315 SVYE------------IGQRIC----AKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKA 358

Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
           GQG+N    D+  L   +A  +          LL  Y +ER+  
Sbjct: 359 GQGMNFSMQDSFNLGWKLAAVLRKQCA---PELLHTYSSERQVV 399

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93
            Q DV +VG G  G+ LA  LA+ P    +   I++    
Sbjct: 30 PSQVDVLIVGCGPAGLTLAAQLAAFP---DIRTCIVEQKEG 67

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 45/223 (20%), Positives = 65/223 (29%), Gaps = 47/223 (21%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE--------HNKENYCAWQRFLPAGPI 290
           LVGADG +S VRE  G    G     + +    +             +         G  
Sbjct: 175 LVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPGTTGWYYLHHPEFKGTF 234

Query: 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
                 D  + +    +P +    +       V+++  ALD              +    
Sbjct: 235 GPTDRPDRHT-LFVEYDPDEGERPEDFTPQRCVELIGLALDAPEVKP-------ELVDIQ 286

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
            +                      + R+        A  +   RV L GDAA    P  G
Sbjct: 287 GWE--------------------MAARI--------AERWREGRVFLAGDAAKVTPPTGG 318

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
              N    D   L+  +A   AV      A LL  YE ERK A
Sbjct: 319 MSGNAAVADGFDLAWKLA---AVLQGQAGAGLLDTYEDERKVA 358

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 16/75 (21%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRV 110
           ND + DV VVG G+ G++ A  LA     +  + V +++  P L           P PR 
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLA-----RQGVRVLVVERRPGL----------SPYPRA 46

Query: 111 STVTPATISFFKEIG 125
           +   P T+   +  G
Sbjct: 47  AGQNPRTMELLRIGG 61

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 56/277 (20%), Positives = 85/277 (30%), Gaps = 54/277 (19%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-----HNKENYCAWQRFLPAGPIALL 293
           LV  DG  S  R+  G        +Q                    A   FL        
Sbjct: 188 LVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSSLRF 247

Query: 294 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
           P+       ++ +      D  S +  D  +++  A+ +       S S         + 
Sbjct: 248 PLRALDGRGLYRLTV--GVDDASKSTMDSFELVRRAVAFDTEIEVLSDSE--------WH 297

Query: 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 413
                                + R+        A+++ + RV L GDAAHT+ P  G G+
Sbjct: 298 --------------------LTHRV--------ADSFSAGRVFLTGDAAHTLSPSGGFGM 329

Query: 414 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--------ANIVMMAVLDGFQ 465
           N G G A+ L   +A   A         LL  YE ER+P        AN+ +   +D   
Sbjct: 330 NTGIGSAADLGWKLA---ATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRTMDREL 386

Query: 466 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
                D GP      AA       S  +R   +    
Sbjct: 387 PPGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIH 423

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 31  ASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIID 89
            SS +    SS    + S  N   + DV ++GGG VGMALA  LA        +   +++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMNAPIETDVLILGGGPVGMALALDLAH-----RQVGHLVVE 56

Query: 90  SNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG 125
                             PRV T+ P ++  F+  G
Sbjct: 57  QTDGT----------ITHPRVGTIGPRSMELFRRWG 82

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 84.4 bits (209), Expect = 8e-18
 Identities = 50/262 (19%), Positives = 80/262 (30%), Gaps = 40/262 (15%)

Query: 225 AKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR 283
             L   +  S  A L + A+GG S+VR+     T         I   +   + N   + +
Sbjct: 159 WTLTFENKPSETADLVILANGGMSKVRKFV-TDTEVEETGTFNIQADIHQPEINCPGFFQ 217

Query: 284 FLPAGP---------IALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYG 333
                          +   P  +      +    P +  +   ++  +   +++  L   
Sbjct: 218 LCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKE- 276

Query: 334 YGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 393
                             F        KE        V LA+         K        
Sbjct: 277 ------------------FSDWDER-YKELIHTTLSFVGLATRIFPLEKPWKS---KRPL 314

Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 452
            + +IGDAAH + P AGQGVN G  DA  LS  +A+       I EA  +K YE +    
Sbjct: 315 PITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD--GKFNSIEEA--VKNYEQQMFIY 370

Query: 453 ANIVMMAVLDGFQKAYSVDFGP 474
                        + +  DF  
Sbjct: 371 GKEAQEESTQNEIEMFKPDFTF 392

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 83.1 bits (205), Expect = 4e-17
 Identities = 66/449 (14%), Positives = 129/449 (28%), Gaps = 87/449 (19%)

Query: 33  SSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSN 91
           SS+     S   V +   ++  +  VA++GGG  G     +L      K    V I +  
Sbjct: 3   SSHHHHHHSSGLVPRG--SHMTRSKVAIIGGGPAGSVAGLTLH-----KLGHDVTIYE-- 53

Query: 92  PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGY 151
               +S F     P      ++ P T+S    +G  + +    +    K       G   
Sbjct: 54  ----RSAF-----PRYRVGESLLPGTMSILNRLGLQEKIDAQNYVK--KPSATFLWGQDQ 102

Query: 152 TKYNARDVNKEILGC------VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS 205
             +       ++          V+ +     LL   ++         + +T + L     
Sbjct: 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGIT-VHEETPVTDVDLSDPDR 161

Query: 206 SISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVGADGGKSRVRELAGFKTTG------ 259
            +        +        +             ++ A G    +    G +         
Sbjct: 162 VVLTVRRGGESVTVE----SDF-----------VIDAGGSGGPISRKLGVRQYDEFYRNF 206

Query: 260 --WSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 317
             WSY +       E + +    +      G + ++PI D+  ++   ++   +++ +  
Sbjct: 207 AVWSYFKLK--DPFEGDLKGT-TYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEVREQ 263

Query: 318 NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 377
             D F    +  L                       G A            R+V+     
Sbjct: 264 GADAF---YSSTLA-------------KCAKAMDILGGAEQVD------EVRIVQ----- 296

Query: 378 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI 437
                S      + + R  L GDAA    PL  QGV+L    A + +  I      G + 
Sbjct: 297 ---DWSY-DTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDE- 351

Query: 438 GEASLLKKYEAERKPANIVMMAVLDGFQK 466
            + ++   Y    + A       L  F  
Sbjct: 352 -KDAVHAWYNRTYREAYEQYHQFLASFYT 379

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 37/217 (17%), Positives = 61/217 (28%), Gaps = 40/217 (18%)

Query: 239 LVGADGGKSRVRELAGFKTTGW---SYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPI 295
           + G DG     R+    +        Y    +    +    ++       P G       
Sbjct: 155 IAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQR 214

Query: 296 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 355
               S   + +    +   +  +++ F   L   L                         
Sbjct: 215 SATRS--QYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLV---------------- 256

Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
                      P        E+ + PL           R+ L GDAAH V P   +G+NL
Sbjct: 257 ---------TGPSL------EKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301

Query: 416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
              D STL R++ +    G       LL++Y A    
Sbjct: 302 AASDVSTLYRLLLKAYREGRG----ELLERYSAICLR 334

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 78.5 bits (194), Expect = 6e-16
 Identities = 49/265 (18%), Positives = 86/265 (32%), Gaps = 72/265 (27%)

Query: 203 SSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV-GADGGKSRVRELAGFKT---- 257
           +S +++ D     T            L  G  L A L+ GADG  S+VR+  GFK     
Sbjct: 127 NSEAVAADPVGRLT------------LQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

Query: 258 TGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 317
           +                       +  +P     L     + +  +W   P+        
Sbjct: 175 SK------------------DGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQ------ 210

Query: 318 NEDDFVK--ILNHALDYGYGPHPKSISSGSV------DMFSWFRGDATLSAKECFEVPPR 369
                +     N    Y     P +   GS            F             + P 
Sbjct: 211 ----RILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-----------LEPC 255

Query: 370 VVKLASER-MVFPL-SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 427
           +++ A  +   +        +++   +V L+GDAAH + P   QG      +A +LS+ +
Sbjct: 256 LIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315

Query: 428 AEGIAVGADIGEASLLKKYEAERKP 452
            E    G+ + +A  L  +E   +P
Sbjct: 316 EE----GSSVEDA--LVAWETRIRP 334

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 71/446 (15%), Positives = 141/446 (31%), Gaps = 104/446 (23%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS---TV 113
              V+G G+ G++ A +L        +   + ++   +               V    +V
Sbjct: 25  KAIVIGAGIGGLSAAVALKQ----SGIDCDVYEAVKEIK-------------PVGAAISV 67

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDY-TGLGYTKYNARDVNKEILG--CVVEN 170
            P  +     +G    ++        +M   D+ +G   T+++   + +      C V  
Sbjct: 68  WPNGVKCMAHLGMGDIMET-FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSR 126

Query: 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
             L   +L                    ++         +      T++          +
Sbjct: 127 AELQREML--------------DYWGRDSVQFGKRVTRCEEDADGVTVW---------FT 163

Query: 231 DGTSLYAKLV-GADGGKSRVRE-LAGFKT----TGWS-YSQNAIICTVEHNKENYCAWQR 283
           DG+S    L+  ADG  S +R  + GF       G+  +  N ++  ++        W  
Sbjct: 164 DGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNW--NGLV-EIDEALAPGDQWTT 220

Query: 284 FLPAGP---IALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPK 339
           F+  G    ++L+P+    F        P   ++ +     D  +        G+ P  +
Sbjct: 221 FV--GEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA-----GWAPPVQ 273

Query: 340 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 399
            + + ++D  +  R +         ++ P                   +  V  RV L+G
Sbjct: 274 KLIA-ALDPQTTNRIEI-------HDIEP------------------FSRLVRGRVALLG 307

Query: 400 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIVM 457
           DA H+  P  GQG      DA  L  +  +      DI  A  L++YEA+R     ++V+
Sbjct: 308 DAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ----TRDIAAA--LREYEAQRCDRVRDLVL 361

Query: 458 MAVLDGFQKAYSVDFGPLNILRAAAF 483
            A               L        
Sbjct: 362 KARKRC--DITHGKDMQLTEAWYQEL 385

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 29/221 (13%), Positives = 58/221 (26%), Gaps = 47/221 (21%)

Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAII-CTVEHNKENYCAWQRFLPAGPIAL--LPI 295
           +V A+G   +             Y +N  I        +      R              
Sbjct: 135 VVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQLFDQMNLVFRTHGKDIFIAHAYKY 194

Query: 296 GDNFSNIVWTMNPK--DASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353
            D  S  +   + +    +    M+E+   + +                         F+
Sbjct: 195 SDTMSTFIVECSEETYARARLGEMSEEASAEYV----------------------AKVFQ 232

Query: 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKH--ANNYVSKRVVLIGDAAHTVHPLAGQ 411
            +                 L S+  +   +      +     ++VL+GDA  + H   G 
Sbjct: 233 AE------------LGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGH 280

Query: 412 GVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
           G  +    A  L + +         +  A  LK++E    P
Sbjct: 281 GTTMAVVVAQLLVKALCT----EDGVPAA--LKRFEERALP 315

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 21/221 (9%), Positives = 58/221 (26%), Gaps = 44/221 (19%)

Query: 239 LVGADGGKSRVRELAGFKTTG--------WSYSQNAIICTVEHNKENYCAWQRFLPAGPI 290
           ++ A G    +  + G             +++ ++         + N        P   I
Sbjct: 158 IIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAVVHKPKVWI 217

Query: 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
            ++P  +  +++ +   P    +     E+    ++ +                     +
Sbjct: 218 WVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIAN--------EG---------HIA 260

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
                            PR ++          ++  A+       VL G+A   + P+  
Sbjct: 261 ERFKSEEFLF------EPRTIE--------GYAI-SASKLYGDGFVLTGNATEFLDPIFS 305

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 451
            G        S   ++  + +       E +  K +     
Sbjct: 306 SGATFAMESGSKGGKLAVQFLKG----EEVNWEKDFVEHMM 342

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 23/88 (26%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRV 110
             ++ DV V+G G  G   A  +      K    V I++      K  F        PR 
Sbjct: 2   QREKVDVLVIGAGPAGTVAASLVN-----KSGFKVKIVE------KQKF--------PRF 42

Query: 111 S---TVTPATISFFKEIGAWQYVQQHRH 135
               ++ P  +    E G    V+    
Sbjct: 43  VIGESLLPRCMEHLDEAGFLDAVKAQGF 70

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 55/290 (18%)

Query: 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLV-GADGGKSRVRE-LAGFKTTGWSYSQNAI 267
           +           GH          +L A ++ GADG  S VR  L           Q  +
Sbjct: 137 ERDGRVLIGARDGH------GKPQALGADVLVGADGIHSAVRAHLHP--------DQRPL 182

Query: 268 ICTVEHNKENYCAWQRFL------PAGPIALLPIGDNFSNIVW--TMNPKDASDCKSMNE 319
                        W R +        G   ++   +++S +V         A     +N 
Sbjct: 183 SHG------GITMW-RGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVN- 234

Query: 320 DDFVKILNHALDYGYGPHPKSISSGSV-DMFSWFRG--DATLSAKECFEVPPRVVKLA-S 375
             +V ++  A              G + D+  +F          ++       +++    
Sbjct: 235 --WVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMV 292

Query: 376 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 435
           +R   P       ++   R+ L+GDAAH ++P+   G +    D   L+  +A      A
Sbjct: 293 DRDPLP-------HWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----NA 341

Query: 436 DIGEASLLKKYEAERKP--ANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 483
           D+  A  L++YE  R+P    I++        K            ++AA 
Sbjct: 342 DVAAA--LREYEEARRPTANKIILANRERE--KEEWAAASRPKTEKSAAL 387

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 40/276 (14%), Positives = 87/276 (31%), Gaps = 40/276 (14%)

Query: 239 LVGADGGKSRVRELAGFKTTG--------WSYSQNAIICTVEHNKENYCAWQRFLPAGPI 290
           +V A G ++RV +  G +           + Y +N     +   ++           G  
Sbjct: 164 IVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGK--RLPAPRQGN-ILSAAFQDGWF 220

Query: 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350
             +P+ D  +++   ++ + A   K  +E   ++ ++        P              
Sbjct: 221 WYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRC------PI-----------IK 263

Query: 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 410
            +   AT      +    R+ K       +         +    + L+GDAA  V P+  
Sbjct: 264 EYLAPATRVTTGDYG-EIRIRK------DYSYCNTS---FWKNGMALVGDAACFVDPVFS 313

Query: 411 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470
            GV+L    A  ++R I   +A   ++ E    +++E   +         L  F      
Sbjct: 314 SGVHLATYSALLVARAINTCLA--GEMSEQRCFEEFERRYRREYGNFYQFLVAFYDMNQD 371

Query: 471 DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRL 506
                   R       +      R I   ++ ++ +
Sbjct: 372 TDSYFWSARKIINTEERANEAFVRLIAGRSNLDEPV 407

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 20/89 (22%)

Query: 50  TNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDP 108
           +   + +D+ V+GGG  G  LA  +A          V +++            +E  P  
Sbjct: 2   STRPEVFDLIVIGGGPGGSTLASFVA-----MRGHRVLLLE------------REAFPRH 44

Query: 109 RV--STVTPATISFFKEIGAWQYVQQHRH 135
           ++  S +          +G    +++   
Sbjct: 45  QIGESLLPATVHGICAMLGLTDEMKRAGF 73

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 55.3 bits (132), Expect = 3e-08
 Identities = 43/399 (10%), Positives = 92/399 (23%), Gaps = 65/399 (16%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           + +VG G  G+ L   L        + V +               +  PD         T
Sbjct: 25  IGIVGAGTAGLHLGLFLRQ----HDVDVTVYT-------------DRKPDEYSGLRLLNT 67

Query: 118 ISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSL 177
           +               +      +  W     GY  +       + +         +  L
Sbjct: 68  V--------AHNAVTVQREVALDVNEWPSEEFGYFGHYYYVGGPQPMR-------FYGDL 112

Query: 178 LSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYA 237
            +  +     +   P  + ++            S      L  +  L  L +  G     
Sbjct: 113 KAPSR-AVDYRLYQPMLMRALEARGGKFCYDAVSAEDLEGLSEQYDL--LVVCTGKYALG 169

Query: 238 KLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG- 296
           K+       S   +    +              ++               G +  +P   
Sbjct: 170 KVFEKQSENSPFEK--PQRALCVGL-----FKGIKEAPIRAVTMSFSPGHGELIEIPTLS 222

Query: 297 --DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG 354
                + +V   +     +  +                 Y   P++     ++       
Sbjct: 223 FNGMSTALVLENHIGSDLEVLA--------------HTKYDDDPRAFLDLMLEKLGKHHP 268

Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL-IGDAAHTVHPLAGQGV 413
                                +  V P          + + ++ +GD   TV P+ GQG 
Sbjct: 269 SVAERIDPAEFDLANSSLDILQGGVVPAFRDGHATLNNGKTIIGLGDIQATVDPVLGQGA 328

Query: 414 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
           N+    A  L   I         + +    +  E  R+ 
Sbjct: 329 NMASYAAWILGEEILA-----HSVYDLRFSEHLERRRQD 362

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 391 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450
               +++IGD+  TV+P+ G G           ++ I      G D   +  L       
Sbjct: 280 AWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETG-DFSASG-LWDMNICY 337

Query: 451 KPANIVMMAVLDGFQKAY 468
                   A LD F++  
Sbjct: 338 VNEYGAKQASLDIFRRFL 355

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
             D  V+G G+VG+A+A +LA+        V + ++   +G
Sbjct: 3  TDIDCIVIGAGVVGLAIARALAA----GGHEVLVAEAAEGIG 40

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 22  SFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTK 81
            F  +  +K+      Q   +  +        +   V VVG G  G   + +        
Sbjct: 91  PFSDAKKKKSWDDGWDQDKIQKAIAAGP---SETTQVLVVGAGSAGFNASLAAKK----A 143

Query: 82  HLSVAIIDSNPALG 95
             +V ++D  P  G
Sbjct: 144 GANVILVDKAPFSG 157

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 21 RSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLT 80
           S           +   +P S + V +     D + DV V G G+ G+A +   A     
Sbjct: 11 SSGLVPRGSHMVDATPIRPRSATTVTEW----DYEADVVVAGYGIAGVAASIEAAR---- 62

Query: 81 KHLSVAIIDSNPALG 95
              V +++     G
Sbjct: 63 AGADVLVLERTSGWG 77

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 19  LQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMP 78
               F      K    ++ + + +  +        +  DV ++G G  G+A A S     
Sbjct: 93  FDMPFGGKWERKFVPVDADKAAQDKAIAAGV---KETTDVVIIGSGGAGLAAAVSARD-- 147

Query: 79  LTKHLSVAIIDSNPALG 95
                 V +++  P  G
Sbjct: 148 --AGAKVILLEKEPIPG 162

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           ++D  VVG G+VG+A A  L         SV ++D+  A G
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWS---GGSVLVVDAGHAPG 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.97
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.97
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.97
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.95
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.9
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.86
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.64
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.61
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.58
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.56
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.55
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.54
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.54
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.52
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.5
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.49
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.48
3dme_A	369	Conserved exported protein; structural genomics, P	99.46
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.42
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.4
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.39
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.39
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.37
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.36
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.34
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.33
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.32
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.32
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.3
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.29
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.28
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.28
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.25
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.23
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.23
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.22
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.22
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.21
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.2
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.19
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.19
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.19
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.19
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.18
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.18
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.17
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.16
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.12
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.11
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.07
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.06
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.06
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.05
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.04
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.03
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.02
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.02
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.02
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.01
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.01
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.0
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.99
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.99
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.98
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.98
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.96
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.96
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.96
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.94
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.93
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.92
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.91
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.91
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.9
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.9
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.9
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.84
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.84
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.83
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.83
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.82
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.8
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.8
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.77
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.75
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.74
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.73
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.72
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.7
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.68
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.66
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.62
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.62
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.61
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.61
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.6
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.58
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.56
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.53
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.48
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.47
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.47
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.46
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.46
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.46
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.46
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.44
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.43
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.42
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.41
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.41
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.4
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.4
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.38
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.38
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.37
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.35
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.34
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.33
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.33
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.33
4dna_A	463	Probable glutathione reductase; structural genomic	98.32
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.3
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.29
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.28
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.28
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.28
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.27
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.27
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.26
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.25
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.25
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.25
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.23
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.23
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.22
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.22
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.21
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.21
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.2
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.2
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.18
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.17
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.14
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.13
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.13
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.13
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.13
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.1
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.08
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.05
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.03
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.02
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.99
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.99
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.95
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.94
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.94
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.93
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.92
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.92
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.91
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.9
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.9
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.87
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.87
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.86
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.86
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.85
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.85
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.81
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.81
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.8
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.8
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.79
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.79
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.79
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.78
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.78
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.78
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.77
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.77
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.76
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.76
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.75
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.75
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.74
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.73
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.72
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.72
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.71
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.71
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.71
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.69
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.69
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.69
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.68
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.66
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.65
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.6
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.59
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.55
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.54
4dna_A	463	Probable glutathione reductase; structural genomic	97.52
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.5
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.49
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.48
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.46
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.45
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.44
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.42
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.42
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.42
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.42
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.39
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.39
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.39
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.39
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.39
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.38
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.29
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.29
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.28
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.27
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.23
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.22
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.2
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.15
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.14
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.11
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.1
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.1
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.1
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.1
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.09
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.03
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.02
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.01
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.97
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.95
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.95
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.94
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	96.87
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.59
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.48
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.46
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.24
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.88
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.85
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.8
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.79
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.75
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.61
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.54
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.29
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.25
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.12
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.11
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.1
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.03
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.98
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.68
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.54
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.51
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	94.48
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	94.37
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.3
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.9
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.81
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.52
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	93.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	93.43
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	93.39
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.38
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.34
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.13
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	93.08
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.87
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.83
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.78
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.71
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	92.63
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.63
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.63
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.45
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.43
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.34
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.28
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.26
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.21
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.19
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.16
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.14
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.11
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.1
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	91.94
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.91
4fk1_A	304	Putative thioredoxin reductase; structural genomic	91.81
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.78
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	91.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.64
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	91.62
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.6
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	91.52
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.33
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.17
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.14
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.14
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.06
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.02
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.95
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.95
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.79
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.74
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.73
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.73
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.73
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.62
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	90.51
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	90.49
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.45
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.45
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.44
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.38
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.37
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.14
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.14
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.12
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	90.03
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.01
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.97
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	89.88
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.87
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.86
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	89.86
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.84
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.83
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	89.78
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.75
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.71
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.68
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.57
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	89.5
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.47
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.33
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	89.32
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	89.26
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.21
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	89.16
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	89.14
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	89.12
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	88.9
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	88.52
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.39
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.37
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	88.35
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	88.35
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	88.34
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.3
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.28
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	88.26
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	88.18
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	88.04
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.03
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	88.03
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	88.02
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.86
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	87.78
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	87.72
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	87.69
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	87.62
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	87.54
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	87.48
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	87.24
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	87.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.19
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.19
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	87.15
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	87.15
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	87.14
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	87.12
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	87.02
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	87.02
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.89
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	86.86
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	86.82
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	86.81
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	86.81
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	86.78
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	86.77
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	86.75
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	86.67
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.63
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.59
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	86.56
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	86.51
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	86.34
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	86.22
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	86.14
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.93
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.53
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.44
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	85.42
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	85.39
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	85.35
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	85.3
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	85.22
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	84.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	84.92
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	84.77
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	84.77
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	84.77
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	84.67
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	84.62
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	84.48
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	84.25
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.24
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	84.21
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	84.07
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	84.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	83.98
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	83.85
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	83.78
3on5_A	362	BH1974 protein; structural genomics, joint center	83.77
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	83.67
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	83.64
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	83.53
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	83.39
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	83.38
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	83.37
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	83.07
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	83.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	82.89
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	82.85
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	82.56
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	82.56
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	82.53
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	82.48
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	82.4
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	83.12
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.22
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	82.16
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	82.11
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	81.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.93
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	81.89
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	81.81
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	81.69
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	81.67
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	81.54
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	81.49
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	81.4
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	81.2
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	81.19
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	80.83
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	80.8
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	80.77
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	80.63
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	80.62
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	80.45

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=2.5e-43  Score=369.62  Aligned_cols=370  Identities=18%  Similarity=0.206  Sum_probs=287.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      .++++||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++++.
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~----G~~v~vlE~~~~~----------~~~~r~~~l~~~~~~~l~~lGl~~~~~   73 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLA----GVEVVVLERLVER----------TGESRGLGFTARTMEVFDQRGILPRFG   73 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCCC-----------CCCCCSEEECHHHHHHHHTTTCGGGGC
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC----------CCCCCcceECHHHHHHHHHCCCHHHHH
Confidence            45679999999999999999999996    9999999999876          345678999999999999999998886


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCC-CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .. . ...... +.  +   ..++..... ..+..+.+++..+.+.|.+.+++.| ++|+++++|+++++          
T Consensus        74 ~~-~-~~~~~~-~~--~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------  134 (500)
T 2qa1_A           74 EV-E-TSTQGH-FG--G---LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLG-ADIRRGHEVLSLTD----------  134 (500)
T ss_dssp             SC-C-BCCEEE-ET--T---EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTT-CEEEETCEEEEEEE----------
T ss_pred             hc-c-cccccc-cc--c---eecccccCCCCCCceeecCHHHHHHHHHHHHHHCC-CEEECCcEEEEEEE----------
Confidence            64 2 222221 11  1   112221222 2335688999999999999999987 99999999999987          


Q ss_pred             CCCccccccccCCeeEEEeCCCc---EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGT---SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP  286 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~---~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (514)
                                +++.++|++.++.   +++||+ |+|||.+|.||+++++...+..+...++.+.+............+.+
T Consensus       135 ----------~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (500)
T 2qa1_A          135 ----------DGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLP  204 (500)
T ss_dssp             ----------ETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCCCCCEEEEEEET
T ss_pred             ----------cCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCCCCCceEEEECC
Confidence                      4456788887765   799999 99999999999999988887777777888877765433334445678


Q ss_pred             CCceEEeecCCCceEEEEEcCcc-chHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPK-DASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  365 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      .++++++|.+++.+++++..... ........+.+++.+.+.+.+.....                              
T Consensus       205 ~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------  254 (500)
T 2qa1_A          205 GGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIA------------------------------  254 (500)
T ss_dssp             TEEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCT------------------------------
T ss_pred             CcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCC------------------------------
Confidence            89999999999888887765332 22223446778888888775531000                              


Q ss_pred             CCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225          366 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  445 (514)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~  445 (514)
                      +    .+ ......|++..+.+++|..+||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ..+.+|+.
T Consensus       255 ~----~~-~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~---~~~~~L~~  326 (500)
T 2qa1_A          255 H----AE-PVWVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGT---ATEELLDS  326 (500)
T ss_dssp             T----SE-EEEEEEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTS---SCHHHHHH
T ss_pred             c----cc-eeEEEEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCC---CChHHHHH
Confidence            0    00 0122347777777889999999999999999999999999999999999999999988632   34789999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       446 Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      |+++|++++..++..++.+.+++.. .+....+|+.++..+ ..|.+++.+.+..+|.+
T Consensus       327 Y~~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~g~~  383 (500)
T 2qa1_A          327 YHSERHAVGKRLLMNTQAQGLLFLS-GPEVQPLRDVLTELI-QYGEVARHLAGMVSGLE  383 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHH-TSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhh-cCHHHHHHHhhhhccCC
Confidence            9999999999999999999999984 677778999887776 68899999988888764

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=2e-43  Score=370.29  Aligned_cols=370  Identities=19%  Similarity=0.234  Sum_probs=287.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      .++++||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~----G~~v~vlE~~~~~----------~~~~r~~~l~~~~~~~l~~lGl~~~~~   74 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLG----GVDVMVLEQLPQR----------TGESRGLGFTARTMEVFDQRGILPAFG   74 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCSSC----------CCCCCSEEECHHHHHHHHHTTCGGGGC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCC----------CCCCceeEECHHHHHHHHHCCCHHHHH
Confidence            34679999999999999999999996    9999999999876          345678999999999999999998876


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCC-CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .. . ...... +.  +   ..++..... ..+.++.+++..+.+.|.+.+.+.| ++|+++++|+++++          
T Consensus        75 ~~-~-~~~~~~-~~--~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------  135 (499)
T 2qa2_A           75 PV-E-TSTQGH-FG--G---RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRG-AELLRGHTVRALTD----------  135 (499)
T ss_dssp             SC-C-EESEEE-ET--T---EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTT-CEEEESCEEEEEEE----------
T ss_pred             hc-c-ccccce-ec--c---eecccccCCCCCCceEecCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence            54 1 222111 11  1   122222222 2335688999999999999999887 99999999999987          


Q ss_pred             CCCccccccccCCeeEEEeCCCc---EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGT---SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP  286 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~---~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (514)
                                +++.++|++.++.   +++||+ |+|||.+|.||+.+++...+..+...++.+.++.+.+.......+.+
T Consensus       136 ----------~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  205 (499)
T 2qa2_A          136 ----------EGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVP  205 (499)
T ss_dssp             ----------CSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCCCCEEEEEEET
T ss_pred             ----------eCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECCCCcceEEEECC
Confidence                      3456778887775   799999 99999999999999988887777777888887765433334445678


Q ss_pred             CCceEEeecCCCceEEEEEcCccc-hHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  365 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      .++++++|.+++.+++++...... .......+.+++.+.+...+.....                              
T Consensus       206 ~g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------  255 (499)
T 2qa2_A          206 LGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDIS------------------------------  255 (499)
T ss_dssp             TEEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCT------------------------------
T ss_pred             CeEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCC------------------------------
Confidence            899999999988888877653321 1122346778888888775531000                              


Q ss_pred             CCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225          366 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  445 (514)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~  445 (514)
                      +    .+ ......|++..+.+++|..+||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ..+.+|+.
T Consensus       256 ~----~~-~~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~~L~~  327 (499)
T 2qa2_A          256 H----GE-PVWVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGR---APAGLLDT  327 (499)
T ss_dssp             T----CE-EEEEEEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTS---SCTHHHHH
T ss_pred             c----cc-eeEEEEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CChHHHHH
Confidence            0    00 1122347777777889999999999999999999999999999999999999999988632   23789999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       446 Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      |+++|++++..++..++.+.+++.. ++....+|+.++..+ ..|.+++.+....+|.+
T Consensus       328 Ye~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~  384 (499)
T 2qa2_A          328 YHEERHPVGRRLLMNTQAQGMLFLS-GDEMQPLRDVLSELI-RYDEVSRHLAGMVSGLD  384 (499)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-CGGGHHHHHHHHHHH-TSSHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhh-cCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999984 677788999888777 68889998888888765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=9.9e-45  Score=385.12  Aligned_cols=374  Identities=21%  Similarity=0.223  Sum_probs=286.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      .+++||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+..
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~----G~~V~VlEr~~~~----------~~~~r~~~l~~~s~~~l~~lGl~~~l~~  112 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAG----GVGALVLEKLVEP----------VGHDRAGALHIRTVETLDLRGLLDRFLE  112 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHT----TCCEEEEBSCSSC----------CCSSSCCCBCHHHHHHHHTTTCHHHHTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEcCCCCC----------CCCceEEEECHHHHHHHHHcCChHHHHh
Confidence            4578999999999999999999996    9999999999876          3456789999999999999999999887


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCC-CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      ........  .+..  .....++..... ..+.++.+++..+.+.|.+.+++.| ++|+++++|++++.           
T Consensus       113 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~-----------  176 (570)
T 3fmw_A          113 GTQVAKGL--PFAG--IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAG-AEIPRGHEVTRLRQ-----------  176 (570)
T ss_dssp             SCCBCSBC--CBTT--BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHT-EECCBSCEEEECCB-----------
T ss_pred             cCcccCCc--eeCC--cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-----------
Confidence            65532211  0111  100012211211 2334678999999999999999876 99999999999986           


Q ss_pred             CCccccccccCCeeEEEe--CCC-cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEE-EecC
Q 010225          212 TPSATTLFTKGHLAKLDL--SDG-TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ-RFLP  286 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~--~~g-~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  286 (514)
                               +++.++|++  .+| .+++||+ |+|||.+|.||+.+++...+..+...++.+.+....+. ..+. .+.+
T Consensus       177 ---------~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~  246 (570)
T 3fmw_A          177 ---------DAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE-VPRRWERTP  246 (570)
T ss_dssp             ---------CSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS-SCCCCCCCC
T ss_pred             ---------cCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC-cceEEEecC
Confidence                     345677776  678 6899999 99999999999999999888888888888887766554 1222 3557


Q ss_pred             CCceEE-eecCCCce-EEEEEcCccc-hHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccc
Q 010225          287 AGPIAL-LPIGDNFS-NIVWTMNPKD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  363 (514)
Q Consensus       287 ~g~~~~-~p~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      .|++++ +|++++.. +++|...... .......+.+++.+.+...+.    ..               ++         
T Consensus       247 ~G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~---------  298 (570)
T 3fmw_A          247 DGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRG----TP---------------LT---------  298 (570)
T ss_dssp             SSCEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSS----CC---------------CC---------
T ss_pred             CEEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhh----cc---------------cc---------
Confidence            788888 89998887 7887765433 223345677777777655332    00               00         


Q ss_pred             ccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHH
Q 010225          364 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  443 (514)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l  443 (514)
                            ......+...||+..+.+.+|..+||+|+|||||.++|+.|||+|+||+||.+|+++|..+++..   +...+|
T Consensus       299 ------~~~~~~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~---~~~~lL  369 (570)
T 3fmw_A          299 ------LTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGW---GSEELL  369 (570)
T ss_dssp             ------CCSCCEEEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSC---CCHHHH
T ss_pred             ------cceeeeeeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCC---CcHHHH
Confidence                  01111244568888888999999999999999999999999999999999999999999988632   348899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          444 KKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       444 ~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      +.|+++|++++..++..++.+.++|+...++...+|+.++.++ ..|.+++.+++.++|..
T Consensus       370 ~~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~lR~~~~~l~-~~~~~~~~~~~~~~g~~  429 (570)
T 3fmw_A          370 DTYHDERHPVAERVLLNTRAQLALMRPDEQHTTPLRGFVEELL-GTDEVNRYFTGMITGTD  429 (570)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSCTTTHHHHHHHHHHHT-TSHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999987666899999999988 79999999999999886

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.7e-44  Score=364.08  Aligned_cols=368  Identities=19%  Similarity=0.220  Sum_probs=270.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..++||+||||||+|+++|+.|++.    |++|+|||+++.+          ...+++..+++++.++|+++|+++.+..
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~~----G~~V~viE~~~~~----------~~~~~~~~l~~~~~~~l~~~g~~~~~~~   69 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGRQ----GHRVVVVEQARRE----------RAINGADLLKPAGIRVVEAAGLLAEVTR   69 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCCC-------------CCCCEECHHHHHHHHHTTCHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCCC----------CccCceeeECchHHHHHHHcCcHHHHHH
Confidence            3468999999999999999999996    9999999998765          3455678999999999999999998876


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                      ... ....+.+++..+.....++.........++.++|..|.+.|.+.+++.++++|+++++|++++.            
T Consensus        70 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~------------  136 (399)
T 2x3n_A           70 RGG-RVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR------------  136 (399)
T ss_dssp             TTC-EEECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEE------------
T ss_pred             hCC-CcceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEE------------
Confidence            544 4566677765554344444433334456789999999999999999883499999999999987            


Q ss_pred             CccccccccCCee--EEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCC--CCCc--eEEEEEEEecCCCcceEEEec
Q 010225          213 PSATTLFTKGHLA--KLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGW--SYSQ--NAIICTVEHNKENYCAWQRFL  285 (514)
Q Consensus       213 ~~~~~~~~~~~~~--~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~  285 (514)
                              +++.+  .|++.+|++++||+ |+|||.+|.+|+.++......  .++.  .++.+.++.+.+.. . .++.
T Consensus       137 --------~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~-~~~~  206 (399)
T 2x3n_A          137 --------DERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERN-R-LYVD  206 (399)
T ss_dssp             --------CTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHHHCE-E-EEEC
T ss_pred             --------cCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEecCCCCCc-c-EEEc
Confidence                    33456  88889998999999 999999999999998766555  5666  66666665433333 3 6677


Q ss_pred             C-CCceEEeecCCCceEEEEEcCccchHHhh-CCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccc
Q 010225          286 P-AGPIALLPIGDNFSNIVWTMNPKDASDCK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  363 (514)
Q Consensus       286 ~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      + +++++++|++++...+.+..+.+...... ..+.+.+.+.+..     |.+..       .  ...            
T Consensus       207 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-------~--~~~------------  260 (399)
T 2x3n_A          207 SQGGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQR-----FVGDE-------S--AEA------------  260 (399)
T ss_dssp             TTSCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSHHHHHHHHT-----TCCGG-------G--HHH------------
T ss_pred             CCCcEEEEEEcCCCEEEEEEEeCccccccccccCCHHHHHHHHhh-----cCCcc-------h--hhH------------
Confidence            8 89999999988544433333433222221 1445555555542     22210       0  000            


Q ss_pred             ccCCCceeeecc--ceeeeeccc-ccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchH
Q 010225          364 FEVPPRVVKLAS--ERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA  440 (514)
Q Consensus       364 ~~~~~~~~~~~~--~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~  440 (514)
                            + +...  ....||+.. ...++|..+||+|+|||||.++|++|||+|+||+||..|+++|...++.+.++  .
T Consensus       261 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~--~  331 (399)
T 2x3n_A          261 ------I-AAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACAL--E  331 (399)
T ss_dssp             ------H-HTCCCSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCH--H
T ss_pred             ------H-hcCCccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchH--H
Confidence                  0 1111  234577777 66788999999999999999999999999999999999999999987654444  7


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHH
Q 010225          441 SLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLK  493 (514)
Q Consensus       441 ~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~  493 (514)
                      .+|+.|+++|++++..++..++.+.++++..+++..++ +.+|..+...|.+.
T Consensus       332 ~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  383 (399)
T 2x3n_A          332 DALAGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVF-DTALQGSSRTPEAL  383 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HC------------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhhhhcccCchHHHH-HHHHhhhcCCCccc
Confidence            89999999999999999999999999999988888899 99998888777543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=3.2e-43  Score=360.86  Aligned_cols=373  Identities=17%  Similarity=0.222  Sum_probs=276.3

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ...+++||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..+++++.++|+++|+++.+
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~----G~~V~v~E~~~~~----------~~~~~~~~l~~~~~~~l~~lg~~~~~   84 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQS----GIDCDVYEAVKEI----------KPVGAAISVWPNGVKCMAHLGMGDIM   84 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSCC--------------CEEEECHHHHHHHHHTTCHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCC----------CCcCeeEEECHHHHHHHHHCCCHHHH
Confidence            345679999999999999999999996    9999999999866          34567899999999999999999999


Q ss_pred             HhhhccCcceEEEEeCC-CcceeeeccCCC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCc
Q 010225          131 QQHRHAYFDKMQVWDYT-GLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~  207 (514)
                      ..... ....+.+++.. +.....++....  .....++.++|..|.+.|.+.+.+   ++|+++++|++++.       
T Consensus        85 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~-------  153 (407)
T 3rp8_A           85 ETFGG-PLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR---DSVQFGKRVTRCEE-------  153 (407)
T ss_dssp             HHHSC-CCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG---GGEEESCCEEEEEE-------
T ss_pred             HhhcC-CCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc---CEEEECCEEEEEEe-------
Confidence            88766 67788888766 443344332211  112446889999999999999976   78999999999987       


Q ss_pred             ccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh-CCCccCCCCCceEEEEEEEecCC--CcceEE-
Q 010225          208 SVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKE--NYCAWQ-  282 (514)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  282 (514)
                                   .++.+.|++.+|+++.||+ |+|||.+|.+|+.+ +........+...+.+.++.+..  ....+. 
T Consensus       154 -------------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (407)
T 3rp8_A          154 -------------DADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTT  220 (407)
T ss_dssp             -------------ETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEE
T ss_pred             -------------cCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEE
Confidence                         4567899999999999999 99999999999999 66544444455566666664422  233333 


Q ss_pred             EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225          283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  362 (514)
Q Consensus       283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                      ++.++++++++|.+++...+++.......   ...+.+.+.+.+.+.+. .|.+.           +..++....     
T Consensus       221 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~-----------~~~~~~~~~-----  280 (407)
T 3rp8_A          221 FVGEGKQVSLMPVSAGRFYFFFDVPLPAG---LAEDRDTLRADLSRYFA-GWAPP-----------VQKLIAALD-----  280 (407)
T ss_dssp             EEETTEEEEEEEETTTEEEEEEEEECCTT---CSCCTTTHHHHHHHHTT-TCCHH-----------HHHHHHHSC-----
T ss_pred             EECCCcEEEEEEcCCCeEEEEEEeCCCcC---CCCCchhHHHHHHHHhc-CCChH-----------HHHHHHcCC-----
Confidence            44688999999999998877776653321   22344566667766554 33321           111111100     


Q ss_pred             cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225          363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  442 (514)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~  442 (514)
                          +...    .....+++..  ..+|..+||+|+|||||.++|++|||+|+||+||..|+++|...   +   ....+
T Consensus       281 ----~~~~----~~~~~~~~~~--~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~---~---~~~~~  344 (407)
T 3rp8_A          281 ----PQTT----NRIEIHDIEP--FSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT---R---DIAAA  344 (407)
T ss_dssp             ----GGGC----EEEEEEECCC--CSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC---C---CHHHH
T ss_pred             ----ccce----eEEeeEecCC--CCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC---C---CHHHH
Confidence                0000    0122244432  37788999999999999999999999999999999999999863   2   34889


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHH
Q 010225          443 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIIS  498 (514)
Q Consensus       443 l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~  498 (514)
                      |+.|+++|++++..++..++.+.++++..+++...+|+..|.... .+.+.+.+..
T Consensus       345 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~-~~~~~~~~~~  399 (407)
T 3rp8_A          345 LREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREET-GERIINGMCD  399 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHSCC-SHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHhhcc-HHHHHHhhhh
Confidence            999999999999999999999999999999999999999998655 3344444443

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=1.4e-40  Score=339.70  Aligned_cols=376  Identities=15%  Similarity=0.112  Sum_probs=269.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ++||+||||||+|+++|+.|++.    |++|+||||.+.+..        ....++..+++++.++|+++|+++.+....
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~   69 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQTPDYV--------LGRIRAGVLEQGMVDLLREAGVDRRMARDG   69 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSCHHHH--------HTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCcc--------cCCCceEeECHHHHHHHHHcCCcHHHHhcC
Confidence            57999999999999999999996    999999999875200        011223469999999999999999988755


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      . +...+.++.........+..  ......++.+++..+.+.|.+.+.+.+ ++|+++++|++++.              
T Consensus        70 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~i~~~~~v~~i~~--------------  131 (394)
T 1k0i_A           70 L-VHEGVEIAFAGQRRRIDLKR--LSGGKTVTVYGQTEVTRDLMEAREACG-ATTVYQAAEVRLHD--------------  131 (394)
T ss_dssp             E-EESCEEEEETTEEEEECHHH--HHTSCCEEECCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEC--------------
T ss_pred             C-ccceEEEEECCceEEecccc--ccCCCceEEechHHHHHHHHHHHHhcC-CeEEeceeEEEEEE--------------
Confidence            5 45666666543322222211  111335678899999999999998876 99999999999976              


Q ss_pred             cccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCc---eEEEEEEEe-cCCCcceEEEecC
Q 010225          215 ATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQ---NAIICTVEH-NKENYCAWQRFLP  286 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~  286 (514)
                           ++++.+.|++ .+|+  +++||+ |+|||.+|.+|+.++..... .+..   ..+...+.. +......+....+
T Consensus       132 -----~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (394)
T 1k0i_A          132 -----LQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLK-VFERVYPFGWLGLLADTPPVSHELIYANHP  205 (394)
T ss_dssp             -----TTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSCGGGCE-EEEEEEEEEEEEEEESSCCSCSSCEEECCT
T ss_pred             -----ecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcCccccc-cccccccceeEEEecCCCCCccceEEEEcC
Confidence                 1124566777 6887  799999 99999999999998754221 1111   112222221 1111222222346


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                      .++.++.|.+++..++++......  .....+.+.+.+.+.+.+. .+              ..+.+..          .
T Consensus       206 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-~~--------------~~~~~~~----------~  258 (394)
T 1k0i_A          206 RGFALCSQRSATRSQYYVQVPLSE--KVEDWSDERFWTELKARLP-SE--------------VAEKLVT----------G  258 (394)
T ss_dssp             TCCEEEEEEETTEEEEEEEECTTC--CGGGCCHHHHHHHHHHTSC-HH--------------HHHHCCC----------C
T ss_pred             CceEEEEecCCCcEEEEEEeCCCC--CccccCHHHHHHHHHHhhC-cc--------------ccccccc----------C
Confidence            677777676667777777665432  2233566777777776443 00              0000000          0


Q ss_pred             CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  446 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y  446 (514)
                       + .    .....+|+......+|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.    ..+|+.|
T Consensus       259 -~-~----~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~~----~~~L~~Y  328 (394)
T 1k0i_A          259 -P-S----LEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGR----GELLERY  328 (394)
T ss_dssp             -C-E----EEEEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCC----GGGGGGH
T ss_pred             -c-c----eeeEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhccCc----hHHHHHH
Confidence             0 0    0123466666667788899999999999999999999999999999999999998875431    5689999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhc---CCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225          447 EAERKPANIVMMAVLDGFQKAYS---VDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  503 (514)
Q Consensus       447 ~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  503 (514)
                      +++|++++..++..++.+..+++   ..+++...+|+..|..+...|.+++.+++..+|.
T Consensus       329 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  388 (394)
T 1k0i_A          329 SAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGL  388 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCCHHHHHHHHHHhcCC
Confidence            99999999999999988877776   3457888999999999999999999999999997

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=3.1e-40  Score=356.73  Aligned_cols=354  Identities=19%  Similarity=0.259  Sum_probs=261.1

Q ss_pred             CccEEEECCCHHHHHHHHHhcc-----CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH
Q 010225           55 QYDVAVVGGGMVGMALACSLAS-----MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~-----~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (514)
                      ++||+||||||+||++|+.|++     .    |++|+||||.+.+          ...+++..++++++++|+++|+++.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~----Gi~v~viE~~~~~----------~~~gra~~l~~~tle~l~~lGl~~~   73 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP----DLKVRIIDKRSTK----------VYNGQADGLQCRTLESLKNLGLADK   73 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST----TCCEEEECSSSSC----------CCSCSCCEECHHHHHHHHTTTCHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC----CCCEEEEeCCCCC----------CCCCceeEEChHHHHHHHHCCCHHH
Confidence            5899999999999999999999     8    9999999998765          3467789999999999999999999


Q ss_pred             HHhhhccCcceEEEEeCCCcceee----eccCC-CCCcccEEEEehHHHHHHHHHHHhcCC--CceEEcCCeeEEEeeCC
Q 010225          130 VQQHRHAYFDKMQVWDYTGLGYTK----YNARD-VNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLP  202 (514)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~v~~~~~v~~v~~~~  202 (514)
                      +..... ++..+.+|+......+.    +.... .......+.++|..+.+.|.+.+.+.+  +++|+++++|++++.++
T Consensus        74 l~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~  152 (665)
T 1pn0_A           74 ILSEAN-DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDS  152 (665)
T ss_dssp             HHTTCB-CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECG
T ss_pred             HHHhcc-ccceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecC
Confidence            987665 67788888755332221    21111 112334578999999999999998865  58999999999998721


Q ss_pred             CCCCcccCCCCccccccccCCeeEEEeC------------------------------------------CC--cEEEee
Q 010225          203 SSSSISVDSTPSATTLFTKGHLAKLDLS------------------------------------------DG--TSLYAK  238 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------------~g--~~~~ad  238 (514)
                      ...     .+.       ++..+++++.                                          +|  ++++||
T Consensus       153 ~~~-----~~~-------~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~  220 (665)
T 1pn0_A          153 SKA-----EDP-------EAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCK  220 (665)
T ss_dssp             GGT-----TCT-------TCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEE
T ss_pred             ccc-----ccC-------CCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeC
Confidence            000     000       1134555442                                          45  479999


Q ss_pred             E-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEe--cCCC-cceEEE-ecCCCceEEeecCCCceEEEEEcCccch--
Q 010225          239 L-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH--NKEN-YCAWQR-FLPAGPIALLPIGDNFSNIVWTMNPKDA--  311 (514)
Q Consensus       239 ~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~--  311 (514)
                      + |+|||++|.||++++....+..+...+....+..  +.+. ...... ..+.|+++++|.+++..++++..+....  
T Consensus       221 ~VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~  300 (665)
T 1pn0_A          221 YVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKG  300 (665)
T ss_dssp             EEEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC-----
T ss_pred             EEEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccc
Confidence            9 9999999999999998877666554443333322  2222 112222 2367999999999998888887765431  


Q ss_pred             --HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccc
Q 010225          312 --SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANN  389 (514)
Q Consensus       312 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  389 (514)
                        ......+.+.+.+.+.+.+. .|..                                .+ ....+...|++..+.+++
T Consensus       301 ~~~~~~~~t~e~~~~~~~~~~~-~~~~--------------------------------~~-~~~~~~~~~~~~~r~a~~  346 (665)
T 1pn0_A          301 GRVDRTKFTPEVVIANAKKIFH-PYTF--------------------------------DV-QQLDWFTAYHIGQRVTEK  346 (665)
T ss_dssp             -----CCCCHHHHHHHHHHHHT-TSCC--------------------------------EE-EEEEEEEEEEEEEEECSC
T ss_pred             cccCcCCCCHHHHHHHHHHHhC-cccC--------------------------------ce-eeEEEEEeeeccceehhh
Confidence              12344677888888877553 1100                                01 122334467887788899


Q ss_pred             cc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 010225          390 YV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAY  468 (514)
Q Consensus       390 ~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~  468 (514)
                      |. .+||+|+|||||.++|+.|||+|+||+||.+|+++|..+++..   +...+|+.|+++|++++..++..++.+.++|
T Consensus       347 ~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~---a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~  423 (665)
T 1pn0_A          347 FSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---AKRDILKTYEEERQPFAQALIDFDHQFSRLF  423 (665)
T ss_dssp             SEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---BCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98 7999999999999999999999999999999999999988632   3478999999999999999999999999999


Q ss_pred             cCCC
Q 010225          469 SVDF  472 (514)
Q Consensus       469 ~~~~  472 (514)
                      +...
T Consensus       424 ~~~~  427 (665)
T 1pn0_A          424 SGRP  427 (665)
T ss_dssp             HSCB
T ss_pred             cCCC
Confidence            7653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=7e-40  Score=347.61  Aligned_cols=344  Identities=22%  Similarity=0.259  Sum_probs=258.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +.++||+||||||+||++|+.|+++    |++|+||||++..          ...+++..++++++++|+++|+++.+..
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~----G~~v~viEr~~~~----------~~~~~~~~l~~~~~~~l~~lGl~~~~~~   68 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQ----GVRVLVVERRPGL----------SPYPRAAGQNPRTMELLRIGGVADEVVR   68 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSSSC----------CCCCCSCCBCHHHHHHHHHTTCHHHHHH
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC----------CCCCccceECHHHHHHHHHcCCHHHHHh
Confidence            4578999999999999999999996    9999999999876          3456678899999999999999999988


Q ss_pred             hhccCcc--eEE--EE-eCCCccee----eeccC----CCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225          133 HRHAYFD--KMQ--VW-DYTGLGYT----KYNAR----DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA  199 (514)
Q Consensus       133 ~~~~~~~--~~~--~~-~~~~~~~~----~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~  199 (514)
                      .......  .+.  .+ ...+....    .++..    ........+.+++..|...|.+.+++.| ++|+++++|++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~i~~~~~v~~i~  147 (535)
T 3ihg_A           69 ADDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHG-GAIRFGTRLLSFR  147 (535)
T ss_dssp             SCCSSCTTSCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTT-CEEESSCEEEEEE
T ss_pred             hCCCcccccceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEE
Confidence            6652211  111  11 22221111    11110    0001223567899999999999999986 9999999999998


Q ss_pred             eCCCCCCcccCCCCccccccccCC----eeEEEeCCC---cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEE
Q 010225          200 LLPSSSSISVDSTPSATTLFTKGH----LAKLDLSDG---TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTV  271 (514)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~g---~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~  271 (514)
                      +                    +++    .+++.+.++   .+++||+ |+|||.+|.+|+++|+...+..+....+...+
T Consensus       148 ~--------------------~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~  207 (535)
T 3ihg_A          148 Q--------------------HDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIF  207 (535)
T ss_dssp             E--------------------ECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEE
T ss_pred             E--------------------CCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEE
Confidence            7                    233    777887776   6899999 99999999999999988776665444444444


Q ss_pred             EecCCC-----c-ceEEEecCCCceEEeecCC-CceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010225          272 EHNKEN-----Y-CAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG  344 (514)
Q Consensus       272 ~~~~~~-----~-~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (514)
                      ..+.+.     . ..+..+.+.++.+++|.++ +.+.+.|...++........+.+.+.+.+.+.+....          
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~----------  277 (535)
T 3ihg_A          208 DADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDAPE----------  277 (535)
T ss_dssp             ECCGGGTSCTTCCEEEEEECSSCEEEEEECSSTTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTCSS----------
T ss_pred             eccChhhccCCceEEEEEECCCceEEEEEecCCCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCCCC----------
Confidence            443221     1 2233445778889999987 6777777776654444455778888888887654100          


Q ss_pred             ccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHH
Q 010225          345 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLS  424 (514)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La  424 (514)
                                           .+.   ++ .....|++....+.+|..+||+|+|||||.++|+.|||+|+||+||.+|+
T Consensus       278 ---------------------~~~---~~-~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La  332 (535)
T 3ihg_A          278 ---------------------VKP---EL-VDIQGWEMAARIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLA  332 (535)
T ss_dssp             ---------------------CCC---EE-EEEEEEEEEEEEESCSEETTEEECTTTTEECCSTTSCHHHHHHHHHHHHH
T ss_pred             ---------------------Cce---eE-EEeeEeeeeEEEECccccCCEEEEecccccCCCccCCccccccccHHHHH
Confidence                                 001   11 12345888888889999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225          425 RIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS  469 (514)
Q Consensus       425 ~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~  469 (514)
                      ++|..+++..   +...+|+.|+++|++++..++..+....+.+.
T Consensus       333 ~~La~~l~g~---~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~~~  374 (535)
T 3ihg_A          333 WKLAAVLQGQ---AGAGLLDTYEDERKVAAELVVAEALAIYAQRM  374 (535)
T ss_dssp             HHHHHHHTTS---SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCC---CcHHHHHhhHHHHHHHHHHHHHHHHHhhHhhc
Confidence            9999988643   23679999999999999999999988887664

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=7.3e-40  Score=335.79  Aligned_cols=362  Identities=16%  Similarity=0.176  Sum_probs=231.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      ++|+||||||+||++|+.|+++    |++|+||||++.+..        ...+.++.++++++++|+++|+.+.+.....
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~----G~~v~v~Er~~~~~~--------~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~   69 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH----GIKVTIYERNSAASS--------ILPGYGIHINSFGKQALQECLPAENWLAFEE   69 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCSSCS--------SCCCCEEEECHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCCEEEEecCCCCCc--------CCCceEEeeCHHHHHHHHHcCChHHHHHhhh
Confidence            5799999999999999999996    999999999987632        2235578899999999999998877654221


Q ss_pred             ---cCcceEEEEeCCCcceeeec-cC---CCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          136 ---AYFDKMQVWDYTGLGYTKYN-AR---DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                         .......+++.......... ..   ........+.++|..|.+.|.+.+   + .+|+++++|++++.        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~-~~v~~~~~v~~~~~--------  137 (412)
T 4hb9_A           70 ASRYIGGQSRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---A-NTIQWNKTFVRYEH--------  137 (412)
T ss_dssp             HCEEECCCCEEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---T-TTEECSCCEEEEEE--------
T ss_pred             hhcccCcceeEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---c-ceEEEEEEEEeeeE--------
Confidence               11122223332221111100 00   001122346799999999998766   3 46899999999986        


Q ss_pred             cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecC
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP  286 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  286 (514)
                                 .+++.++|++.||++++||+ |+|||.+|.||+.++.......++...+.+........ ......+..
T Consensus       138 -----------~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (412)
T 4hb9_A          138 -----------IENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRD  206 (412)
T ss_dssp             -----------CTTSCEEEEETTSCEEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTS
T ss_pred             -----------cCCCeEEEEECCCCEEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhcc
Confidence                       13356899999999999999 99999999999999887777777777777776654221 000011111


Q ss_pred             CCceEEee----------------------cCCCceEEEEEc---CccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCC
Q 010225          287 AGPIALLP----------------------IGDNFSNIVWTM---NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI  341 (514)
Q Consensus       287 ~g~~~~~p----------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (514)
                      ..+..++|                      .......+.|..   ...........+.+.+.+.+.+.+. +|.+..   
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~---  282 (412)
T 4hb9_A          207 GTPNSIVPKSPDWLFISMWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMI-SWDPSL---  282 (412)
T ss_dssp             SCCEEECCSSSEEEEEEEEEEESCTTSCGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTT-TSCHHH---
T ss_pred             CCcceEeecCCCcceeeeeecCCceeEEEeccCCCceEEEEEecccccccccccccchHHHHHHHHHHhc-cCChHH---
Confidence            11111111                      111111222222   1112223345667778888877665 554331   


Q ss_pred             CCCccccccccccCccccccccccCCCceeeeccceeeeeccc-ccccccccCcEEEEcccccccCCcccccchhhhHHH
Q 010225          342 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA  420 (514)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da  420 (514)
                          .+.+..    ..                ......+.+.. .+..+|..|||+|+|||||.++|+.|||+|+||+||
T Consensus       283 ----~~li~~----~~----------------~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA  338 (412)
T 4hb9_A          283 ----HTLVQQ----SD----------------MENISPLHLRSMPHLLPWKSSTVTLLGDAIHNMTPMTGSGANTALRDA  338 (412)
T ss_dssp             ----HHHHHT----SC----------------TTCCEEEEEEECCCCCCCCCCSEEECTHHHHCSSCCSSSHHHHHHHHH
T ss_pred             ----HHHHHh----cc----------------cceeccchhccccccccccccCEEEEEcccccCCCchhhHHHHHHHHH
Confidence                111111    00                00011122221 235678899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHH--hhcCCCchHHHHHHHHH
Q 010225          421 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQK--AYSVDFGPLNILRAAAF  483 (514)
Q Consensus       421 ~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~~l  483 (514)
                      ..|+++|..+.+...++  ..+|+.|+++|++++..++..+.....  +++...++. ..|+..+
T Consensus       339 ~~La~~L~~~~~~~~~~--~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~r~~~~  400 (412)
T 4hb9_A          339 LLLTQKLASVASGHEEL--VKAISDYEQQMRAYANEIVGISLRSAQNAVIHFSIPPL-KQRHLSI  400 (412)
T ss_dssp             HHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------
T ss_pred             HHHHHHHHHHhcCCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHH
Confidence            99999999988766554  789999999999999999998876654  344444433 3454444

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=1.8e-38  Score=342.40  Aligned_cols=352  Identities=20%  Similarity=0.293  Sum_probs=251.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhcc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      +.++||+||||||+||++|+.|++ .    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~----G~~V~viEr~~~~----------~~~g~a~~l~~~t~e~l~~lGl~~~~~   95 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFP----DIRTCIVEQKEGP----------MELGQADGIACRTMEMFEAFEFADSIL   95 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCT----TSCEEEECSSSSC----------CSSCSCCEECHHHHHHHHHTTCHHHHH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhC----CCCEEEEeCCCCC----------CCCCceeeeCHHHHHHHHHcCcHHHHH
Confidence            356899999999999999999999 8    9999999999866          345678899999999999999999988


Q ss_pred             hhhccCcceEEEEeCCC--ccee----eeccCC-CCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCC
Q 010225          132 QHRHAYFDKMQVWDYTG--LGYT----KYNARD-VNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPS  203 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~--~~~~----~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~  203 (514)
                      .... ....+.+|+...  ...+    .+.... .......+.+++..+.+.|.+.+++.| +++|+++++|+++++   
T Consensus        96 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~---  171 (639)
T 2dkh_A           96 KEAC-WINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKV---  171 (639)
T ss_dssp             HHSE-EECEEEEEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEE---
T ss_pred             Hhcc-cccceEEECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEE---
Confidence            7665 456677776321  1111    111111 112344578999999999999999988 459999999999987   


Q ss_pred             CCCcccCCCCccccccccCCeeEEEeC------CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEe-
Q 010225          204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-  273 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~-  273 (514)
                            +.+.       .+..++|++.      +|  .+++||+ |+|||.+|.||++++....+..+...+....+.. 
T Consensus       172 ------~~~~-------~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~  238 (639)
T 2dkh_A          172 ------DHGA-------ADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAV  238 (639)
T ss_dssp             ------CTTC-------SSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEE
T ss_pred             ------CCCC-------CcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEc
Confidence                  1110       1135666654      46  4799999 9999999999999998877666555444433322 


Q ss_pred             -cCCC-cceEEEecCCCceEEeecCCC-ceEEEEEcCcc--c-hHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Q 010225          274 -NKEN-YCAWQRFLPAGPIALLPIGDN-FSNIVWTMNPK--D-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD  347 (514)
Q Consensus       274 -~~~~-~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (514)
                       +.+. ........+.|+++++|.+++ ..++++.....  . .......+.+.+.+.+.+.+. .+..           
T Consensus       239 ~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~-----------  306 (639)
T 2dkh_A          239 TDFPDVRYKVAIQSEQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLH-PYKL-----------  306 (639)
T ss_dssp             ECCTTTTSEEEEEETTEEEEEEECTTSSCEEEEEECC-----------CCCHHHHHHHHHHHHT-TSCE-----------
T ss_pred             cCCCccceeEEEEcCCceEEEEEcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhC-cccC-----------
Confidence             2222 111211227889999999888 77888876541  1 112334677788777766443 0000           


Q ss_pred             cccccccCccccccccccCCCceeeeccceeeeecccccccccc------------cCcEEEEcccccccCCcccccchh
Q 010225          348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYV------------SKRVVLIGDAAHTVHPLAGQGVNL  415 (514)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~v~LvGDAAh~~~P~~GqG~~~  415 (514)
                                           .+ ....+...|++..+.+.+|.            .+||+|+|||||.++|+.|||+|+
T Consensus       307 ---------------------~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~  364 (639)
T 2dkh_A          307 ---------------------EV-KNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF  364 (639)
T ss_dssp             ---------------------EE-EEEEEEEEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHH
T ss_pred             ---------------------cc-eeeeEEEecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchh
Confidence                                 00 11123334666666677776            899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010225          416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF  472 (514)
Q Consensus       416 al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~  472 (514)
                      ||+||.+|+++|..+++..   +...+|+.|+++|++++..++..++.+.++|+...
T Consensus       365 ai~DA~nLawkLa~vl~g~---a~~~lL~~Ye~eR~~~a~~~~~~s~~~~~~~~~~~  418 (639)
T 2dkh_A          365 SMQDSFNLGWKLAAVLRKQ---CAPELLHTYSSERQVVAQQLIDFDREWAKMFSDPA  418 (639)
T ss_dssp             HHHHHHHHHHHHHHHHTTS---BCGGGGHHHHHHHHHHHHHHHHHHHHSCC------
T ss_pred             hHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999988632   34679999999999999999999999999887653

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.5e-38  Score=337.63  Aligned_cols=353  Identities=21%  Similarity=0.262  Sum_probs=248.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.+
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~----G~~V~vlEr~~~~----------~~~~~~~~l~~~~~~~l~~lGl~~~~~~   89 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHR----QVGHLVVEQTDGT----------ITHPRVGTIGPRSMELFRRWGVAKQIRT   89 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCSC----------CSSCCCCEECHHHHHHHHHTTCHHHHHT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC----------CCCCceeeeCHHHHHHHHHcCChHHHHh
Confidence            4568999999999999999999996    9999999999866          3456678999999999999999999887


Q ss_pred             hhccCcc--eEEEEe-CCCcceeeeccCCC-------CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCC
Q 010225          133 HRHAYFD--KMQVWD-YTGLGYTKYNARDV-------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLP  202 (514)
Q Consensus       133 ~~~~~~~--~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~  202 (514)
                      .......  ...++. ..+.....+.....       .....++.+++..+.+.|.+.+.+.    |+++++|+++++  
T Consensus        90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~----v~~~~~v~~~~~--  163 (549)
T 2r0c_A           90 AGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER----LRTRSRLDSFEQ--  163 (549)
T ss_dssp             SSCCTTSBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG----EECSEEEEEEEE--
T ss_pred             hcCCcccccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh----cccCcEEEEEEE--
Confidence            6552211  122222 22222212221110       1223457899999999999999864    899999999987  


Q ss_pred             CCCCcccCCCCccccccccCCeeEEEeCC---C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC
Q 010225          203 SSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE  276 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~  276 (514)
                                        +++.+++++.+   |  .+++||+ |+|||.+|.||+.++....+..+...++...++.+..
T Consensus       164 ------------------~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~  225 (549)
T 2r0c_A          164 ------------------RDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPEL  225 (549)
T ss_dssp             ------------------CSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTH
T ss_pred             ------------------eCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCch
Confidence                              33556776654   6  4799999 9999999999999998888777666666666665411


Q ss_pred             ------Cc-ceEEEecCC-CceEEeecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Q 010225          277 ------NY-CAWQRFLPA-GPIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD  347 (514)
Q Consensus       277 ------~~-~~~~~~~~~-g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (514)
                            .. ..+..+.++ ++++++|.+++ .+.+.+  +... +  . .+.+.+.+.+.+.+..    .          
T Consensus       226 ~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~--~~~~-~--~-~~~~~~~~~l~~~~~~----~----------  285 (549)
T 2r0c_A          226 RSLLGERAALFFFLMLSSSLRFPLRALDGRGLYRLTV--GVDD-A--S-KSTMDSFELVRRAVAF----D----------  285 (549)
T ss_dssp             HHHHGGGCCSEEEEEEETTEEEEEEESSSSSEEEEEE--ECST-T--C-CSCCCHHHHHHHHBCS----C----------
T ss_pred             HHhcCCCCceEEEEECCCCcEEEEEEECCCcEEEEEe--cCCC-C--C-CCHHHHHHHHHHHhCC----C----------
Confidence                  11 222333566 67899999764 343333  2211 1  1 4556667777664430    0          


Q ss_pred             cccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHH
Q 010225          348 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII  427 (514)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l  427 (514)
                                        ++..+.    +...|++..+.+++|..+||+|+|||||.++|+.|||+|+||+||.+|+++|
T Consensus       286 ------------------~~~~~~----~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~L  343 (549)
T 2r0c_A          286 ------------------TEIEVL----SDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKL  343 (549)
T ss_dssp             ------------------CCCEEE----EEEEEEECCEECSCSEETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CceeEE----EEecchhHhhhHHhhcCCcEEEEccccccCCCccCCccccccHHHHHHHHHH
Confidence                              110111    1235777777889999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC---------CchHHHHHHHHHHHhcc
Q 010225          428 AEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD---------FGPLNILRAAAFHGAQY  488 (514)
Q Consensus       428 ~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~~~l~~~~~  488 (514)
                      ...++..   +.+.+|+.|+++|++++..++..+..+.+++...         ++....+|+.+...+..
T Consensus       344 a~~l~g~---a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~  410 (549)
T 2r0c_A          344 AATLRGW---AGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGPRGERIRAAVAEKLER  410 (549)
T ss_dssp             HHHHHTC---SCTTTTHHHHHHHHHHHHHHHHC----------CCCCTTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcchHHHHHHHHHHHHh
Confidence            9988642   2367999999999999999999999998888642         55567788877776643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=2.2e-37  Score=316.25  Aligned_cols=335  Identities=21%  Similarity=0.214  Sum_probs=235.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +.++||+||||||+||++|+.|++.    |++|+|||+.+.+.         ...+++..+++++.++|+++|+++  ..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~~~g~~l~~~~~~~l~~~g~~~--~~   67 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDA----GVDVDVYERSPQPL---------SGFGTGIVVQPELVHYLLEQGVEL--DS   67 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC---------CCCSCEEECCHHHHHHHHHTTCCG--GG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCC---------CccccccccChhHHHHHHHcCCcc--cc
Confidence            3468999999999999999999996    99999999987541         234567889999999999999987  23


Q ss_pred             hhccCcceEEEEeC-CCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          133 HRHAYFDKMQVWDY-TGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       133 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .. .+...+.+++. .+.....+..       ....+.+..+.+.|.+.+.   +++|+++++|++++.           
T Consensus        68 ~~-~~~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~l~~~L~~~~~---~~~i~~~~~v~~i~~-----------  125 (397)
T 2vou_A           68 IS-VPSSSMEYVDALTGERVGSVPA-------DWRFTSYDSIYGGLYELFG---PERYHTSKCLVGLSQ-----------  125 (397)
T ss_dssp             TC-BCCCEEEEEETTTCCEEEEEEC-------CCCEEEHHHHHHHHHHHHC---STTEETTCCEEEEEE-----------
T ss_pred             cc-ccccceEEEecCCCCccccccC-------cccccCHHHHHHHHHHhCC---CcEEEcCCEEEEEEe-----------
Confidence            22 35666777765 4432222211       0124778999999998873   489999999999987           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCc--------ceEE
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY--------CAWQ  282 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  282 (514)
                               .++.+.|++.+|+++.||+ |+|||.+|.+|+.++ +......+...+.+.++......        ....
T Consensus       126 ---------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (397)
T 2vou_A          126 ---------DSETVQMRFSDGTKAEANWVIGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTY  195 (397)
T ss_dssp             ---------CSSCEEEEETTSCEEEESEEEECCCTTCHHHHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEE
T ss_pred             ---------cCCEEEEEECCCCEEECCEEEECCCcchhHHHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeE
Confidence                     4456889999999999999 999999999999998 54322223344455554221111        1222


Q ss_pred             EecCCCceEEeecCCC------ceEEEEEcCccchHHhhC------------------CCHHHHHHHHHHhhcCCCCCCC
Q 010225          283 RFLPAGPIALLPIGDN------FSNIVWTMNPKDASDCKS------------------MNEDDFVKILNHALDYGYGPHP  338 (514)
Q Consensus       283 ~~~~~g~~~~~p~~~~------~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  338 (514)
                      ++.+++++.++|++++      ..+++|+.+.........                  .+.+.+ ..+.+.+...|.+  
T Consensus       196 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--  272 (397)
T 2vou_A          196 GLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNL-RQFHSKGESLFKP--  272 (397)
T ss_dssp             EEETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHH-HHHHHHHTTSCHH--
T ss_pred             EecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHHH-HHHHHHHHhhChH--
Confidence            3456677888888763      556777765433111100                  122333 2332222111111  


Q ss_pred             CCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhH
Q 010225          339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFG  418 (514)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~  418 (514)
                                +..                  +.+.......+|+....+++|..+||+|+|||||.++|+.|||+|+||+
T Consensus       273 ----------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~  324 (397)
T 2vou_A          273 ----------FRD------------------LVLNASSPFVTVVADATVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASD  324 (397)
T ss_dssp             ----------HHH------------------HHHHCSSCEEEEEEEBCCSCSEETTEEECGGGTSBCCGGGSCHHHHHHH
T ss_pred             ----------HHH------------------HHhccCCcceeeeeeecCCceecCcEEEEeccccccCCcchhhHHHHHH
Confidence                      000                  0111112234677666778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225          419 DASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD  471 (514)
Q Consensus       419 da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~  471 (514)
                      ||..|+++|..    ..++  ..+|+.|+++|++++..++..++.+.++++..
T Consensus       325 DA~~La~~L~~----~~~~--~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~  371 (397)
T 2vou_A          325 DARTLAEVFTK----NHDL--RGSLQSWETRQLQQGHAYLNKVKKMASRLQHG  371 (397)
T ss_dssp             HHHHHHHHHHH----CSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhc----CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999985    2233  78999999999999999999999999998864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=7.4e-38  Score=317.85  Aligned_cols=323  Identities=20%  Similarity=0.210  Sum_probs=231.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+|+++|+.|++.    |++|+|||+.+.++          ..+++..+++++.++|+++|+++.+...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~----------~~~~~~~l~~~~~~~l~~~g~~~~~~~~   75 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN----GWDVRLHEKSSELR----------AFGAGIYLWHNGLRVLEGLGALDDVLQG   75 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSCC----------CCSSEEEEEHHHHHHHHHTTCHHHHHTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCC----------CCCceEEeCccHHHHHHHcCCHHHHHhh
Confidence            368999999999999999999996    99999999998762          3466899999999999999999988776


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .. ....+.+++. +.....++..    ....+.++|..|.+.|.+.+.+.| ++|+++++|++++.             
T Consensus        76 ~~-~~~~~~~~~~-g~~~~~~~~~----~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~-------------  135 (379)
T 3alj_A           76 SH-TPPTYETWMH-NKSVSKETFN----GLPWRIMTRSHLHDALVNRARALG-VDISVNSEAVAADP-------------  135 (379)
T ss_dssp             CB-CCSCEEEEET-TEEEEEECGG----GCCEEEEEHHHHHHHHHHHHHHTT-CEEESSCCEEEEET-------------
T ss_pred             CC-CccceEEEeC-CceeeeccCC----CCceEEECHHHHHHHHHHHHHhcC-CEEEeCCEEEEEEe-------------
Confidence            55 5667777776 4332222211    223688999999999999999886 99999999999964             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec-----CC-CcceEE---E
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-----KE-NYCAWQ---R  283 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~---~  283 (514)
                               ++ .|++.+|+++.||+ |+|||.+|.+|+.++........+...+.+.++..     .. .....+   +
T Consensus       136 ---------~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
T 3alj_A          136 ---------VG-RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNF  205 (379)
T ss_dssp             ---------TT-EEEETTSCEEECSEEEECCCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECC
T ss_pred             ---------CC-EEEECCCCEEEcCEEEECCCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceE
Confidence                     23 77788898999999 99999999999999764433333445556666553     11 122333   4


Q ss_pred             ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccc
Q 010225          284 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  363 (514)
Q Consensus       284 ~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      +.++++++++|++++...+++..+.....      ++.+.+.+.....     .       .. .+..++...       
T Consensus       206 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~-----~-------~~-~~~~~l~~~-------  259 (379)
T 3alj_A          206 WPRVQRILYSPCNENELYLGLMAPAADPR------GSSVPIDLEVWVE-----M-------FP-FLEPCLIEA-------  259 (379)
T ss_dssp             SSSCCEEEEEECSSSEEEEEEEECTTCTT------TTCSSCCHHHHHH-----H-------CG-GGHHHHHHH-------
T ss_pred             ECCCCEEEEEECCCCcEEEEEEecCCCCC------HHHHHHHHhcCCc-----h-------hc-cHHHHHhhC-------
Confidence            66889999999999887777666532110      0000000000000     0       00 000000000       


Q ss_pred             ccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225          364 FEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  442 (514)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~  442 (514)
                               .......|+++.. .+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...    .+.  ..+
T Consensus       260 ---------~~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~----~~~--~~~  324 (379)
T 3alj_A          260 ---------AKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEG----SSV--EDA  324 (379)
T ss_dssp             ---------HTCTTCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTSS----SCH--HHH
T ss_pred             ---------CccceEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhccc----cCH--HHH
Confidence                     0011123554442 367888999999999999999999999999999999999999752    233  789


Q ss_pred             HHHHHHHhhHHHHHHHHHH
Q 010225          443 LKKYEAERKPANIVMMAVL  461 (514)
Q Consensus       443 l~~Y~~~r~~~~~~~~~~~  461 (514)
                      |+.|+++|++++..++..+
T Consensus       325 l~~Y~~~r~~~~~~~~~~s  343 (379)
T 3alj_A          325 LVAWETRIRPITDRCQALS  343 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=2.5e-36  Score=321.13  Aligned_cols=351  Identities=16%  Similarity=0.166  Sum_probs=251.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ++.+||+||||||+|+++|+.|++.    |++|+|||+.+.+.           ...+..+.+.+..+|+.+|+++.+..
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~----G~~V~LiEr~~~~~-----------~~~G~~l~p~~~~~l~~lGl~~~l~~   85 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKL----GHDVTIYERSAFPR-----------YRVGESLLPGTMSILNRLGLQEKIDA   85 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCSSC-----------CCCCCBCCHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcC----CCCEEEEcCCCCCC-----------CceeeeECHHHHHHHHHcCCcHHHHh
Confidence            4579999999999999999999996    99999999997652           23367889999999999999998887


Q ss_pred             hhccCcceEEEEeCCCccee--eeccCCC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          133 HRHAYFDKMQVWDYTGLGYT--KYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      ..........+.........  .+.....  .....++.++|..|.+.|.+.+++.| ++++++++|++++.        
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~V~~v~~--------  156 (591)
T 3i3l_A           86 QNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG-ITVHEETPVTDVDL--------  156 (591)
T ss_dssp             HCCEEECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEC--------
T ss_pred             cCCcccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------
Confidence            65433333333222221111  2211111  12345789999999999999999877 99999999999986        


Q ss_pred             cCCCCccccccccCCeeEEEeC-CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec----CC-Ccc
Q 010225          209 VDSTPSATTLFTKGHLAKLDLS-DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN----KE-NYC  279 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~-~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~  279 (514)
                                 +++..+.|.+. +|  .++.||+ |+|||.+|.+|+.++.......+...++...+...    .+ ...
T Consensus       157 -----------~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~~  225 (591)
T 3i3l_A          157 -----------SDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKGT  225 (591)
T ss_dssp             -----------CSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTTC
T ss_pred             -----------cCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCCc
Confidence                       12356777776 66  5799999 99999999999999876543333334444444332    11 245


Q ss_pred             eEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccc
Q 010225          280 AWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS  359 (514)
Q Consensus       280 ~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (514)
                      .+..+.+.|++|++|.+++..++.|.............+.+.+...+...++                .+...+...   
T Consensus       226 ~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p----------------~l~~~l~~~---  286 (591)
T 3i3l_A          226 TYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCA----------------KAMDILGGA---  286 (591)
T ss_dssp             EEEEEETTEEEEEEECSSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCH----------------HHHHHHTTC---
T ss_pred             eEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHhhhccCCHHHHHHHHHHhCH----------------HHHHHHhcC---
Confidence            6667779999999999999989988887665544444455666666554222                111111110   


Q ss_pred             ccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcch
Q 010225          360 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE  439 (514)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~  439 (514)
                                  ........++........|..+|+++||||||.++|+.|||+|+|++||..|+++|.+.+..+.  ..
T Consensus       287 ------------~~~~~~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~--~~  352 (591)
T 3i3l_A          287 ------------EQVDEVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGD--EK  352 (591)
T ss_dssp             ------------EECSCCEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGG--GH
T ss_pred             ------------ccccCceEecccccchhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCc--hH
Confidence                        0111111222233345678889999999999999999999999999999999999999887542  23


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHH--HhhcCC
Q 010225          440 ASLLKKYEAERKPANIVMMAVLDGFQ--KAYSVD  471 (514)
Q Consensus       440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~--~~~~~~  471 (514)
                      ..+++.|++.|+.++..+..+...++  ......
T Consensus       353 ~~al~~Y~~~~~~~~~~i~~~~~~~Y~~~~~~r~  386 (591)
T 3i3l_A          353 DAVHAWYNRTYREAYEQYHQFLASFYTFASFTEP  386 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            67999999999999999999998888  555443

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=8.6e-37  Score=313.27  Aligned_cols=336  Identities=18%  Similarity=0.201  Sum_probs=230.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      .++||+||||||+||++|+.|++.    |++ |+||||.+.+          ...+++..+++++.++|+++|+++.+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~----------~~~g~g~~l~~~~~~~l~~lg~~~~l~~   68 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQA----GIGKVTLLESSSEI----------RPLGVGINIQPAAVEALAELGLGPALAA   68 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESSSSC----------CCCSCEEEECHHHHHHHHHTTCHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCCCc----------ccceeEEEEChHHHHHHHHCCChHHHHh
Confidence            468999999999999999999996    999 9999999866          2355689999999999999999998887


Q ss_pred             hhccCcceEEEEeCCCcceeeeccC-CCCCcccEEEEehHHHHHHHHHHHhcC-CCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNAR-DVNKEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~-g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ... +...+.+++..+......... ........+.++|..|.+.|.+.+.+. |.++|+++++|++++.          
T Consensus        69 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~----------  137 (410)
T 3c96_A           69 TAI-PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE----------  137 (410)
T ss_dssp             HSE-EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE----------
T ss_pred             hCC-CcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec----------
Confidence            655 556666766554332222111 111223457899999999999999763 5468999999999964          


Q ss_pred             CCCccccccccCCeeEEEeCC---C--cEEEeeE-EEecCCCchhhhhhCCCccCCCC-CceEEEEEEEecCC-CcceEE
Q 010225          211 STPSATTLFTKGHLAKLDLSD---G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE-NYCAWQ  282 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~  282 (514)
                                 ++.+.|.+.+   |  .++.||+ |+|||.+|.+|+.++.......+ +...+.+..+.... ......
T Consensus       138 -----------~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  206 (410)
T 3c96_A          138 -----------RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKTMI  206 (410)
T ss_dssp             -----------ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCTTSSEEE
T ss_pred             -----------CCccEEEEecCCCCCceEEecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccccCCCeEE
Confidence                       1346677655   7  4799999 99999999999999754433333 22233333333221 122333


Q ss_pred             Eec--CCCceEEeecCC-----CceEEEEEcCccchH--------H-hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 010225          283 RFL--PAGPIALLPIGD-----NFSNIVWTMNPKDAS--------D-CKSMNEDDFVKILNHALDYGYGPHPKSISSGSV  346 (514)
Q Consensus       283 ~~~--~~g~~~~~p~~~-----~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (514)
                      .+.  +.++++++|+.+     +...+.|........        . ....+.+.+.+.+    . +|.....       
T Consensus       207 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~-------  274 (410)
T 3c96_A          207 VANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFF----A-DWDLGWF-------  274 (410)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHH----T-TCCBTTB-------
T ss_pred             EecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHHHHh----c-CCCCchh-------
Confidence            344  367889999863     455566655322111        0 0112233443332    2 2221100       


Q ss_pred             ccccccccCccccccccccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHHHH
Q 010225          347 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSR  425 (514)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~  425 (514)
                       .+..                  +.+.......||+... +.++|..+||+|+|||||.++|+.|||+|+||+||..|++
T Consensus       275 -~~~~------------------~i~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~  335 (410)
T 3c96_A          275 -DIRD------------------LLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAA  335 (410)
T ss_dssp             -CHHH------------------HHHTCSEEEEEEEEECCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHH
T ss_pred             -HHHH------------------HHhcCcccceeecccCCCccccccCCEEEEecccCCCCCccchhHHHHHHHHHHHHH
Confidence             0000                  0111122234665543 3678989999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHH
Q 010225          426 IIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD  462 (514)
Q Consensus       426 ~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~  462 (514)
                      +|...   + +  ...+|+.|+++|++++..++..++
T Consensus       336 ~L~~~---~-~--~~~~L~~Ye~~r~~~~~~~~~~s~  366 (410)
T 3c96_A          336 ALARN---A-D--VAAALREYEEARRPTANKIILANR  366 (410)
T ss_dssp             HHHHC---S-S--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcc---C-C--HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99873   2 3  378999999999999999988776

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=5.8e-36  Score=315.46  Aligned_cols=386  Identities=15%  Similarity=0.120  Sum_probs=261.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHH-HHHHcCCcHHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQYVQ  131 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~~~  131 (514)
                      +.++||+||||||+|+++|+.|++.    |++|+|||+.+.+.           ...+..+.+.... +++.+|+++.+.
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~----G~~V~liE~~~~~~-----------~~~g~~~~~~~~~~~l~~lgl~~~~~   69 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMR----GHRVLLLEREAFPR-----------HQIGESLLPATVHGICAMLGLTDEMK   69 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCSSC-----------CCSCCBCCHHHHTTHHHHTTCHHHHH
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhC----CCCEEEEccCCCCC-----------CCCCcccCcchHHHHHHHhCcHHHHH
Confidence            3468999999999999999999996    99999999998552           2234566777654 899999998887


Q ss_pred             hhhccCcceEEEEeCCCcce--eeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225          132 QHRHAYFDKMQVWDYTGLGY--TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~  209 (514)
                      ...........+........  ..+..........++.++|..|.+.|.+.+++.| ++|+++++|++++.         
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~~~~V~~v~~---------  139 (512)
T 3e1t_A           70 RAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKG-VDVRERHEVIDVLF---------  139 (512)
T ss_dssp             TTTCCEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEE---------
T ss_pred             HcCCccccCceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE---------
Confidence            76553322222222222111  2222222334456788999999999999999877 99999999999987         


Q ss_pred             CCCCccccccccCC---eeEEEeCCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec----CCC-c
Q 010225          210 DSTPSATTLFTKGH---LAKLDLSDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN----KEN-Y  278 (514)
Q Consensus       210 ~~~~~~~~~~~~~~---~~~v~~~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~----~~~-~  278 (514)
                                 .++   .+.+...+|+  ++.||+ |+|||.+|.+|+.++.......+...++.+.+...    .+. .
T Consensus       140 -----------~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  208 (512)
T 3e1t_A          140 -----------EGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQG  208 (512)
T ss_dssp             -----------ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTT
T ss_pred             -----------ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcC
Confidence                       223   3556666785  799999 99999999999999765555555666777666532    122 3


Q ss_pred             ceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccc
Q 010225          279 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL  358 (514)
Q Consensus       279 ~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (514)
                      ..+..+.+.|++|++|++++..+++|..+........ .+.++....+...++                .+..++.... 
T Consensus       209 ~~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~~~-~~~~~~~~~~l~~~p----------------~~~~~l~~~~-  270 (512)
T 3e1t_A          209 NILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAIK-DGHEAALLRYIDRCP----------------IIKEYLAPAT-  270 (512)
T ss_dssp             SEEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTTTS-SCHHHHHHHHHHTSH----------------HHHHHHTTCE-
T ss_pred             ceEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhhhc-CCHHHHHHHHHHhCc----------------hHHHHHhcCc-
Confidence            4566677899999999999988888887654332222 223333333322111                1111111000 


Q ss_pred             cccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcc
Q 010225          359 SAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIG  438 (514)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~  438 (514)
                         .....      ........+.......+|..+||+|||||||.++|+.|||+|+|++||..|+++|...++...  .
T Consensus       271 ---~~~~~------~~~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~--~  339 (512)
T 3e1t_A          271 ---RVTTG------DYGEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEM--S  339 (512)
T ss_dssp             ---ECCSS------TTSSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCS--C
T ss_pred             ---ccccc------ccccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCc--c
Confidence               00000      000000111122245678889999999999999999999999999999999999999876433  3


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCC
Q 010225          439 EASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLP  507 (514)
Q Consensus       439 ~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~  507 (514)
                      ...+|+.|++.|+++...+......++.+....+.+. |..   ...+...+...+.++..+.|..+.-
T Consensus       340 ~~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~~r~ds~f-W~~---~~~~~~~~~~~~~f~~~~~g~~~~~  404 (512)
T 3e1t_A          340 EQRCFEEFERRYRREYGNFYQFLVAFYDMNQDTDSYF-WSA---RKIINTEERANEAFVRLIAGRSNLD  404 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCHH-HHT---SSCCCSHHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHH-HHH---HhhhccCcHHHHHHHHHHcCCCChH
Confidence            4789999999999999999999998888876543332 211   1223334666777777777776543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=1.3e-36  Score=310.77  Aligned_cols=354  Identities=19%  Similarity=0.192  Sum_probs=234.4

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeCh-hhHHHHHHcCCcH
Q 010225           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQ  128 (514)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~  128 (514)
                      |+++.++||+||||||+|+++|+.|++.    |++|+||||.+.+..        ...+.+..+.+ ++.++|+++|+++
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~g~~~~~~~~~~~~~l~~~gl~~   88 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQN----GIDVSVYERDNDREA--------RIFGGTLDLHKGSGQEAMKKAGLLQ   88 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTT----TCEEEEEECSSSTTC--------CCCSCCEECCTTTHHHHHHHTTCHH
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCccc--------cccCCeeeeCCccHHHHHHhcChHH
Confidence            3345678999999999999999999996    999999999876531        12234455654 5689999999999


Q ss_pred             HHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                      .+..... +... .+++..+........... .......++|..|.+.|.+.+.+   ++|+++++|++++.        
T Consensus        89 ~~~~~~~-~~~~-~~~~~~g~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~--------  154 (398)
T 2xdo_A           89 TYYDLAL-PMGV-NIADEKGNILSTKNVKPE-NRFDNPEINRNDLRAILLNSLEN---DTVIWDRKLVMLEP--------  154 (398)
T ss_dssp             HHHHHCB-CCCE-EEECSSSEEEEECCCGGG-TTSSCCEECHHHHHHHHHHTSCT---TSEEESCCEEEEEE--------
T ss_pred             HHHHhhc-ccce-EEECCCCCchhhcccccc-CCCCCceECHHHHHHHHHhhcCC---CEEEECCEEEEEEE--------
Confidence            9887654 3444 566554432222200100 11122468999999999998753   67899999999987        


Q ss_pred             cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC---C------Cc
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK---E------NY  278 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~---~------~~  278 (514)
                                  .++.++|++.+|++++||+ |+|||.+|.+|+.++... ....+..++.+.++...   +      ..
T Consensus       155 ------------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vR~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  221 (398)
T 2xdo_A          155 ------------GKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTE-VEETGTFNIQADIHQPEINCPGFFQLCNG  221 (398)
T ss_dssp             ------------CSSSEEEEETTSCCEEESEEEECSCTTCSCCTTTCCCC-CEEEEEEEEEEEESSHHHHSHHHHHHHTT
T ss_pred             ------------CCCEEEEEECCCcEEecCEEEECCCcchhHHhhccCCC-ceEcceEEEEEEeCchhccCchhHhhcCC
Confidence                        3356889999998899999 999999999999986421 11113344444443210   1      01


Q ss_pred             ceEEEecCCCceEEeecCCCceEEEEEcCccch-HH---hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccc
Q 010225          279 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDA-SD---CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG  354 (514)
Q Consensus       279 ~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (514)
                      ..+..+.+...++++|.+++..++++....... ..   ....+++.+.+.+.+.|. .|.+.           +...+.
T Consensus       222 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----------~~~~~~  289 (398)
T 2xdo_A          222 NRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFS-DWDER-----------YKELIH  289 (398)
T ss_dssp             SEEEEEETTEEEEEEEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTT-TSCHH-----------HHHHHH
T ss_pred             ceEEEecCCCeEEEEeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHc-CCChH-----------HHHHHh
Confidence            122334566667777888887777665532221 11   112356677777777665 33321           111100


Q ss_pred             CccccccccccCCCceeeeccceeeeeccccc-cccccc-C--cEEEEcccccccCCcccccchhhhHHHHHHHHHHHHh
Q 010225          355 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-ANNYVS-K--RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG  430 (514)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~-~--~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~  430 (514)
                      .                  ......++++..+ ...|.. +  ||+|+|||||.++|+.|||+|+||+||..|+++|...
T Consensus       290 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~  351 (398)
T 2xdo_A          290 T------------------TLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG  351 (398)
T ss_dssp             H------------------CSCCEEEEEEECCCCSCCCSCCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC
T ss_pred             C------------------cccceeeeeEeccCCCCcccCCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc
Confidence            0                  0011123333222 235654 5  8999999999999999999999999999999999874


Q ss_pred             hhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHH-HhhcCCCchHH
Q 010225          431 IAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ-KAYSVDFGPLN  476 (514)
Q Consensus       431 ~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~  476 (514)
                         +.+. .+.+|+.|+++|++++..++..+.... .+|....++..
T Consensus       352 ---~~~~-~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~  394 (398)
T 2xdo_A          352 ---KFNS-IEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTFQQ  394 (398)
T ss_dssp             ---CSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC--
T ss_pred             ---cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence               2231 378999999999999999999776665 56666665543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=1.9e-35  Score=301.20  Aligned_cols=353  Identities=16%  Similarity=0.147  Sum_probs=229.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ++|||+||||||+||++|+.|++.    |++|+||||++.++.         ....+..|++.   +++.+++.......
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~----G~~V~v~Er~~~~~~---------~~~~g~~l~~~---~l~~l~~~~~~~~~   66 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKY----GLKTLMIEKRPEIGS---------PVRCGEGLSKG---ILNEADIKADRSFI   66 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSTTC---------SCCSCCEEETH---HHHHTTCCCCTTTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCC---------CCceecccCHH---HHHHcCCCchhhhh
Confidence            369999999999999999999997    999999999886631         22234566654   56667764332221


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      . ..+....++...+.....+.. .......++.++|..|.+.|.+.+.+.| ++++++++|+++..             
T Consensus        67 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~R~~~~~~L~~~a~~~G-~~~~~~~~v~~~~~-------------  130 (397)
T 3oz2_A           67 A-NEVKGARIYGPSEKRPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAG-ADVWVKSPALGVIK-------------  130 (397)
T ss_dssp             E-EEESEEEEECTTCSSCEEEEC-SSSSCCCEEEECHHHHHHHHHHHHHHHT-CEEESSCCEEEEEE-------------
T ss_pred             h-cccceEEEEeCCCceEeeccc-cccCCceeEEEEHHHHHHHHHHHHHhcC-cEEeeeeeeeeeee-------------
Confidence            1 245566676655544443332 2234556899999999999999999987 99999999999976             


Q ss_pred             ccccccccCCeeEEEe-CCC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC---CCcceEEE---
Q 010225          214 SATTLFTKGHLAKLDL-SDG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK---ENYCAWQR---  283 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~-~~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---  283 (514)
                            +.+..+.+.. .++  .+++||+ |+|||.+|.+|+.++.......+........+....   +......+   
T Consensus       131 ------~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (397)
T 3oz2_A          131 ------ENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLGS  204 (397)
T ss_dssp             ------ETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECST
T ss_pred             ------ccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeeec
Confidence                  1222222322 233  3699999 999999999999998776665555444444333322   11222222   


Q ss_pred             ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccc
Q 010225          284 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  363 (514)
Q Consensus       284 ~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (514)
                      ..+.++.|++|.+++..++.+..........  .....+...+.+.++                .+..   .        
T Consensus       205 ~~~~g~~~~~~~~~~~~~vg~~~~~~~~~~~--~~~~~~l~~~~~~~~----------------~l~~---~--------  255 (397)
T 3oz2_A          205 IAPAGYIWVFPKGEGMANVGIGSSINWIHNR--FELKNYLDRFIENHP----------------GLKK---G--------  255 (397)
T ss_dssp             TSTTEEEEEEEEETTEEEEEEEEETTTSCSH--HHHHHHHHHHHHTCH----------------HHHT---S--------
T ss_pred             cCCCceEEEeecccceeEEEEeeccchhhhh--hhHHHHHHHHHHhCc----------------cccc---c--------
Confidence            2367899999999998888776644321110  111222222222111                0000   0        


Q ss_pred             ccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHH
Q 010225          364 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  443 (514)
Q Consensus       364 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l  443 (514)
                           ...+.  .....|+ ......+..+||+|+|||||.++|++|||+|+||+||..||++|.++++.+. . ++.+|
T Consensus       256 -----~~~~~--~~~~~~~-~~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~-~-~~~~L  325 (397)
T 3oz2_A          256 -----QDIQL--VTGGVSV-SKVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESND-Y-SPQMM  325 (397)
T ss_dssp             -----EEEEE--EEEEEEC-CCCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTC-C-SHHHH
T ss_pred             -----ceeee--eeccccc-cCcccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCC-c-cHHHH
Confidence                 00011  1111222 1233557789999999999999999999999999999999999999998774 3 47899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          444 KKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       444 ~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                      +.|++.++++..............+..-+.   ..++.++..+
T Consensus       326 ~~Ye~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  365 (397)
T 3oz2_A          326 QKYEKLIKERFERKHLRNWVAKEKLAMLSD---DTLDKLVDIV  365 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHH
Confidence            999999998887666555444444433221   2344455544

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=3.3e-35  Score=302.45  Aligned_cols=337  Identities=12%  Similarity=0.117  Sum_probs=242.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|||+++.+.           ...|..+.+.+..+|+.+|+++.+...
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~----G~~V~v~E~~~~~~-----------~~~g~~~~~~~~~~l~~~g~~~~~~~~   68 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKS----GFKVKIVEKQKFPR-----------FVIGESLLPRCMEHLDEAGFLDAVKAQ   68 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCSSC-----------CCSCCBCCGGGHHHHHHTTCHHHHHHT
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCC-----------CcccCcccHhHHHHHHHcCChHHHHHc
Confidence            458999999999999999999996    99999999998652           244678899999999999999998887


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .........+..........+..........++.++|..|.+.|.+.+++.| ++|+++++|++++..            
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~g-v~i~~~~~v~~i~~~------------  135 (421)
T 3nix_A           69 GFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQG-VDVEYEVGVTDIKFF------------  135 (421)
T ss_dssp             TCEEECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHT-CEEECSEEEEEEEEE------------
T ss_pred             CCcccCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEEe------------
Confidence            6544445555444333333333333334556789999999999999999887 999999999999871            


Q ss_pred             ccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-----cceEEE--
Q 010225          214 SATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQR--  283 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--  283 (514)
                            +++..+.+...+|+  +++||+ |+|||.+|.+|+.++.+.....+....+...+....+.     ......  
T Consensus       136 ------~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (421)
T 3nix_A          136 ------GTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAV  209 (421)
T ss_dssp             ------TTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEE
T ss_pred             ------CCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEE
Confidence                  01123566678887  799999 99999999999999887776666666776666543221     111112  


Q ss_pred             -ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225          284 -FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  362 (514)
Q Consensus       284 -~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (514)
                       ..+.+++|++|.+++..++.+....+..... ..+.+++...+...++     .           +...+...      
T Consensus       210 ~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~-~~~~~~~l~~~~~~~p-----~-----------~~~~l~~~------  266 (421)
T 3nix_A          210 VHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEY-TGTPEERMRAMIANEG-----H-----------IAERFKSE------  266 (421)
T ss_dssp             EEETTEEEEEEECTTSEEEEEEEECHHHHTTS-CSCHHHHHHHHHHTCT-----T-----------THHHHTTC------
T ss_pred             eCCCCEEEEEEEECCCCEEEEEEecHHHhhhc-CCCHHHHHHHHHHhCc-----H-----------HHHHHhcC------
Confidence             2377899999999999999888765433222 2355555555544221     1           11111110      


Q ss_pred             cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225          363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  442 (514)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~  442 (514)
                               ........++.......++..++++++|||||.++|+.|||+++|++||..|+++|.+.++.+.    ...
T Consensus       267 ---------~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~----~~~  333 (421)
T 3nix_A          267 ---------EFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEE----VNW  333 (421)
T ss_dssp             ---------CBSSCCEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCC----CCH
T ss_pred             ---------ccccCceeecccceeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCc----hhH
Confidence                     0112223455555567778889999999999999999999999999999999999999886542    236


Q ss_pred             HHHHHHHhhHHHHHHHHH
Q 010225          443 LKKYEAERKPANIVMMAV  460 (514)
Q Consensus       443 l~~Y~~~r~~~~~~~~~~  460 (514)
                      +..|.+.++.........
T Consensus       334 ~~~y~~~~~~~~~~~~~~  351 (421)
T 3nix_A          334 EKDFVEHMMQGIDTFRSF  351 (421)
T ss_dssp             HHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            778888887765544443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.8e-34  Score=299.65  Aligned_cols=334  Identities=17%  Similarity=0.155  Sum_probs=227.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +++||+||||||+|+++|+.|++.    |++|+|||+.+.+...        ....+..+   +...|+.+|+++.....
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~----G~~V~vlE~~~~~~~g--------~~~~g~~l---~~~~l~~lg~~~~~~~~   69 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRR----GLKILLVDSKPWNRIG--------DKPCGDAV---SKAHFDKLGMPYPKGEE   69 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSS----SCCEEEECSSCGGGTT--------CSCCCCEE---EHHHHHHTTCCCCCGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCCCC--------cccccccc---cHHHHHHhcCCCCchHH
Confidence            468999999999999999999996    9999999998864210        11223344   56788888876543221


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .......+.++.........+       ...++.++|..|.+.|.+.+.+.| ++|+++++|++++.             
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~~~~v~~i~~-------------  128 (453)
T 3atr_A           70 LENKINGIKLYSPDMQTVWTV-------NGEGFELNAPLYNQRVLKEAQDRG-VEIWDLTTAMKPIF-------------  128 (453)
T ss_dssp             EEEEEEEEEEECTTSSCEEEE-------EEEEEEECHHHHHHHHHHHHHHTT-CEEESSEEEEEEEE-------------
T ss_pred             HHhhhcceEEECCCCceEEeE-------CCCcEEEcHHHHHHHHHHHHHHcC-CEEEeCcEEEEEEE-------------
Confidence            122334455554443222222       124688999999999999999876 99999999999986             


Q ss_pred             ccccccccCCeeE-EEeC---CCc--EEEeeE-EEecCCCchhhhhhCCCcc--CCCC---CceEEEEEEEecCCC--cc
Q 010225          214 SATTLFTKGHLAK-LDLS---DGT--SLYAKL-VGADGGKSRVRELAGFKTT--GWSY---SQNAIICTVEHNKEN--YC  279 (514)
Q Consensus       214 ~~~~~~~~~~~~~-v~~~---~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~--~~~~---~~~~~~~~~~~~~~~--~~  279 (514)
                             +++.+. |.+.   +|+  +++||+ |+|||.+|.+|+.++...+  ...+   ...++...+....+.  ..
T Consensus       129 -------~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (453)
T 3atr_A          129 -------EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHD  201 (453)
T ss_dssp             -------ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTT
T ss_pred             -------ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCC
Confidence                   223332 4443   676  799999 9999999999999976542  1111   134455555554332  12


Q ss_pred             eE-EEe----cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccc
Q 010225          280 AW-QRF----LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG  354 (514)
Q Consensus       280 ~~-~~~----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (514)
                      .. .++    .+++++|++|.+++..++++........   ....+.+.+.+.+..+ .|.                  +
T Consensus       202 ~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~---~~~~~~~~~~l~~~~~-~~~------------------~  259 (453)
T 3atr_A          202 YLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGY---PSIHEYYKKYLDKYAP-DVD------------------K  259 (453)
T ss_dssp             EEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSSCC---CCHHHHHHHHHHHHCT-TEE------------------E
T ss_pred             eEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCCCC---CCHHHHHHHHHHhhhh-hcC------------------C
Confidence            22 222    2678999999999988888776533210   0123444444433111 000                  0


Q ss_pred             CccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcC
Q 010225          355 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG  434 (514)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~  434 (514)
                      .             .+.+..  ....|. ..+.++|..+|++|+|||||.++|++|||+|+||+||..||++|.++++.+
T Consensus       260 ~-------------~~~~~~--~~~~p~-~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~  323 (453)
T 3atr_A          260 S-------------KLLVKG--GALVPT-RRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETG  323 (453)
T ss_dssp             E-------------EEEEEE--EEEEEC-SSCCSCSEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             C-------------eEEecc--ceeccC-CCCCCceecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            0             011111  112343 345677888999999999999999999999999999999999999987655


Q ss_pred             CCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010225          435 ADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV  470 (514)
Q Consensus       435 ~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~  470 (514)
                       +. ...+|+.|+++|++++...+..++.+.+++..
T Consensus       324 -~~-~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~  357 (453)
T 3atr_A          324 -DF-SASGLWDMNICYVNEYGAKQASLDIFRRFLQK  357 (453)
T ss_dssp             -CC-STTTTTHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             -Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             32 25689999999999999999999888888764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=2.1e-34  Score=292.61  Aligned_cols=337  Identities=12%  Similarity=0.100  Sum_probs=217.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCc-HH-HHhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW-QY-VQQH  133 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~-~~-~~~~  133 (514)
                      .||+||||||+||++|+.|++..  .|++|+||||.+.+          ...+++..+++++.+.+...+++ +. +...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~--~G~~V~v~E~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQAR--PLWAIDIVEKNDEQ----------EVLGWGVVLPGRPGQHPANPLSYLDAPERLN   68 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSSCTT----------CCCCSEEEEESCTTTCTTCGGGGSSCGGGGC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC--CCCCEEEEECCCCC----------CcceeEEEeCcHHHHhhcCcchhhhhhHHHh
Confidence            48999999999999999999931  18999999999876          23456788888776622222333 32 3222


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .. ....+.++. .+. ...  .   ......+.++|..|.+.|.+.+++.| ++|+++++|++++.             
T Consensus        69 ~~-~~~~~~~~~-~g~-~~~--~---~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~-------------  126 (381)
T 3c4a_A           69 PQ-FLEDFKLVH-HNE-PSL--M---STGVLLCGVERRGLVHALRDKCRSQG-IAIRFESPLLEHGE-------------  126 (381)
T ss_dssp             CE-EECCEEEEE-SSS-EEE--C---CCCSCEEEEEHHHHHHHHHHHHHHTT-CEEETTCCCCSGGG-------------
T ss_pred             hc-cccceEEEe-CCe-eEE--e---cCCCceeeecHHHHHHHHHHHHHHCC-CEEEeCCEeccchh-------------
Confidence            11 334455555 221 111  1   11223468999999999999999886 99999999998853             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCC--C-CCceEEEEEEEecCCCcceEEEecCCCc
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGW--S-YSQNAIICTVEHNKENYCAWQRFLPAGP  289 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~  289 (514)
                               .         .+++||+ |+|||.+|. |+.+.......  . +....+.+.... .+....+..+.+.|+
T Consensus       127 ---------~---------~~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~  186 (381)
T 3c4a_A          127 ---------L---------PLADYDLVVLANGVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQL-FDQMNLVFRTHGKDI  186 (381)
T ss_dssp             ---------C---------CGGGCSEEEECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSC-CSSEEEEEEEETTEE
T ss_pred             ---------c---------ccccCCEEEECCCCCch-HHhhhhhcCCCcccCCccEEEEecCCC-CCcceeeEeeCCCcE
Confidence                     1         1257999 999999999 99873221111  1 122222222211 112222223346666


Q ss_pred             eE--EeecCCCceEEEEEcCccch--HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225          290 IA--LLPIGDNFSNIVWTMNPKDA--SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  365 (514)
Q Consensus       290 ~~--~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (514)
                      ++  ++|++++...+.+..+.+..  ......+.+.+.+.+.+.|. .|.+...                          
T Consensus       187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~--------------------------  239 (381)
T 3c4a_A          187 FIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQ-AELGGHG--------------------------  239 (381)
T ss_dssp             EEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTH-HHHTTCC--------------------------
T ss_pred             EEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhc-ccCCCch--------------------------
Confidence            54  68998877654444332211  11223466777777777664 2211100                          


Q ss_pred             CCCceeeeccceeeeeccc-ccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225          366 VPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  444 (514)
Q Consensus       366 ~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~  444 (514)
                          +.....  ..|++.. .++++|..+||+|+|||||+++|+.|||+|+||+||..|+++|...    .+.  ..+|+
T Consensus       240 ----l~~~~~--~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~----~~~--~~aL~  307 (381)
T 3c4a_A          240 ----LVSQPG--LGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE----DGV--PAALK  307 (381)
T ss_dssp             ----CBCCTT--TCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS----SSH--HHHHH
T ss_pred             ----hhcCCC--cceeeeccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc----ccH--HHHHH
Confidence                000000  1233332 3467888999999999999999999999999999999999999874    233  78999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCC-----CchHHHHHHHHHHH
Q 010225          445 KYEAERKPANIVMMAVLDGFQKAYSVD-----FGPLNILRAAAFHG  485 (514)
Q Consensus       445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~l~~  485 (514)
                      .|+++|++++..++..++.+.+++...     .++....|+.++..
T Consensus       308 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  353 (381)
T 3c4a_A          308 RFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFVQSFDARR  353 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC------CHHHHGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhchhhhhcCCHHHHHHHHhhcc
Confidence            999999999999999999998555432     25556777777665

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=100.00  E-value=1.4e-30  Score=274.79  Aligned_cols=360  Identities=13%  Similarity=0.093  Sum_probs=232.8

Q ss_pred             CccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH--
Q 010225           55 QYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--  129 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--  129 (514)
                      .+||+|||||++|+++|+.|++   .    |++|+|||+.+.+           ..+.+..+.+....+++.+|+.+.  
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~----G~~V~lvE~~~~~-----------~~~~g~~~~~~~~~~l~~lgi~~~~~   66 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDD----RIDVTLVESGNVR-----------RIGVGEATFSTVRHFFDYLGLDEREW   66 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGG----GSEEEEEEC------------------CCEECCTTHHHHHHHHTCCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCC----CCEEEEEecCCCC-----------ceeeccccCcchHHHHHHcCCCHHHH
Confidence            4799999999999999999999   7    8999999998643           223467788889999999999875  


Q ss_pred             HHhhhccCcceEEEEeCC--Cc------c------eeee------------c----------------------cCCC--
Q 010225          130 VQQHRHAYFDKMQVWDYT--GL------G------YTKY------------N----------------------ARDV--  159 (514)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~--~~------~------~~~~------------~----------------------~~~~--  159 (514)
                      +............+.+..  +.      .      ...+            .                      ....  
T Consensus        67 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (511)
T 2weu_A           67 LPRCAGGYKLGIRFENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFAS  146 (511)
T ss_dssp             HHHTTCEEECEEEEESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC-
T ss_pred             HHHcCCeEeccceecCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccc
Confidence            444321111112221100  00      0      0000            0                      0001  


Q ss_pred             --C-----------C--cccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe
Q 010225          160 --N-----------K--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL  224 (514)
Q Consensus       160 --~-----------~--~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (514)
                        .           .  ...++.++|..|.+.|.+.+++.| ++++++ +|++++..                  +++..
T Consensus       147 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~g-v~~~~~-~v~~i~~~------------------~~~~~  206 (511)
T 2weu_A          147 QVDESLGRSTLAEQRAQFPYAYHFDADEVARYLSEYAIARG-VRHVVD-DVQHVGQD------------------ERGWI  206 (511)
T ss_dssp             -----CCSCCGGGCCSCCSCEEEECHHHHHHHHHHHHHHTT-CEEEEC-CEEEEEEC------------------TTSCE
T ss_pred             cccccccccccccCcCCCCeeEEEcHHHHHHHHHHHHHHCC-CEEEEC-eEeEEEEc------------------CCCCE
Confidence              1           1  345788999999999999999877 999999 99999761                  02234


Q ss_pred             eEEEeCCCcEEEeeE-EEecCCCchhhh-hhCCCccCC---CCCceEEEEEEEecCC---CcceEEEecCCCceEEeecC
Q 010225          225 AKLDLSDGTSLYAKL-VGADGGKSRVRE-LAGFKTTGW---SYSQNAIICTVEHNKE---NYCAWQRFLPAGPIALLPIG  296 (514)
Q Consensus       225 ~~v~~~~g~~~~ad~-V~AdG~~S~vR~-~l~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~p~~  296 (514)
                      +.|.+.+|+++.||+ |+|||.+|.+++ .++.....+   ......+...++...+   .......+.+.|++|++|.+
T Consensus       207 ~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~  286 (511)
T 2weu_A          207 SGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLF  286 (511)
T ss_dssp             EEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECS
T ss_pred             EEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECC
Confidence            678888888899999 999999999954 556654322   2223344434443322   12234456688999999998


Q ss_pred             CCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccc
Q 010225          297 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE  376 (514)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (514)
                      + ...+.+.....      ..++++..+.+.+.+.  +.+.                                +    ..
T Consensus       287 ~-~~~~g~~~~~~------~~~~~~~~~~l~~~~~--~~~~--------------------------------~----~~  321 (511)
T 2weu_A          287 K-RDGNGYVYSDE------FISPEEAERELRSTVA--PGRD--------------------------------D----LE  321 (511)
T ss_dssp             S-EEEEEEEECTT------TSCHHHHHHHHHHHHC--TTCT--------------------------------T----SC
T ss_pred             C-ceEEEEEECCC------CCCHHHHHHHHHHHhC--cccc--------------------------------c----cc
Confidence            7 34444433321      1345566666666442  1110                                0    00


Q ss_pred             eeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHH
Q 010225          377 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  456 (514)
Q Consensus       377 ~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~  456 (514)
                      ...+++.....+.+..+||+|||||||.++|+.|||+|+|++||..|+++|..    +.+  ...+|+.|++.|++++..
T Consensus       322 ~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~----~~~--~~~~l~~Y~~~~~~~~~~  395 (511)
T 2weu_A          322 ANHIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG----ERW--DPVLISAYNERMAHMVDG  395 (511)
T ss_dssp             CEEEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC----TTC--CHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc----CCC--CHHHHHHHHHHHHHHHHH
Confidence            11123333334567789999999999999999999999999999999998864    222  368999999999999999


Q ss_pred             HHHHHHHHHHhhcCCC-chHHHHHHHHHHHhccChhHHHHHHHHhhcCCC
Q 010225          457 MMAVLDGFQKAYSVDF-GPLNILRAAAFHGAQYISPLKRNIISYASGEQR  505 (514)
Q Consensus       457 ~~~~~~~~~~~~~~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~  505 (514)
                      +.......+.+..... ++....+     .+..-..++..+-.+..+...
T Consensus       396 ~~~~~~~~y~~~~r~~~~fw~~~~-----~~~~p~~l~~~~~~~~~~~~~  440 (511)
T 2weu_A          396 VKEFLVLHYKGAQREDTPYWKAAK-----TRAMPDGLARKLELSASHLLD  440 (511)
T ss_dssp             HHHHHHHHHHHCCCCCSHHHHHHH-----HSCCCTTHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHhhhcCCCCcHHHHhcc-----cCCCCHHHHHHHHHHHhCCCc
Confidence            9998888887665443 3322222     233334666666666555444

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=1e-30  Score=276.33  Aligned_cols=335  Identities=16%  Similarity=0.118  Sum_probs=223.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc------------CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS------------MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF  121 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~------------~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  121 (514)
                      ..+||+||||||+|+++|+.|++            .    |++|+|||+.+.+           ..+.+..+.+++..+|
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~----G~~V~liE~~~~~-----------~~g~g~~~~p~~~~~l   70 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP----KLNITLIESPDVA-----------TIGVGEGTWPSMRSTL   70 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC----SCEEEEEECSSCC-----------CCCSCEECCTHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC----CCeEEEEeCCCCC-----------CcceeeechHhHHHHH
Confidence            56899999999999999999999            6    9999999997654           1233788999999999


Q ss_pred             HHcCCcHH--HHhhhccCcceEEEEeCCC-------cc------------eeeecc------------------------
Q 010225          122 KEIGAWQY--VQQHRHAYFDKMQVWDYTG-------LG------------YTKYNA------------------------  156 (514)
Q Consensus       122 ~~lgl~~~--~~~~~~~~~~~~~~~~~~~-------~~------------~~~~~~------------------------  156 (514)
                      +.+|+.+.  +..........+.+.+...       ..            ...+..                        
T Consensus        71 ~~lGi~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~  150 (526)
T 2pyx_A           71 SKIGIDENDFIRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQL  150 (526)
T ss_dssp             HHHTCCHHHHHHHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHT
T ss_pred             HHcCCCHHHHHHHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhh
Confidence            99999986  4544332223333321110       00            000100                        


Q ss_pred             ---------CCC-CCcccEEEEehHHHHHHHHHHHhc-CCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCee
Q 010225          157 ---------RDV-NKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA  225 (514)
Q Consensus       157 ---------~~~-~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (514)
                               ... .....++.++|..|.+.|.+.+++ .| ++++++ +|++++..                  +++..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~a~~~~G-v~i~~~-~v~~i~~~------------------~~g~~~  210 (526)
T 2pyx_A          151 GLAPKSIVTAQYHFQNNYGYHLNAAKFSQLLTEHCTQKLG-VTHIRD-HVSQIINN------------------QHGDIE  210 (526)
T ss_dssp             TBCSSCTTSCTTCCSSCCEEEECHHHHHHHHHHHHHHTSC-CEEEEC-CEEEEEEC------------------TTSCEE
T ss_pred             ccchhhhhccccCCCCCeeEEEcHHHHHHHHHHHHHhcCC-CEEEEe-EEEEEEec------------------CCCcEE
Confidence                     000 122346889999999999999998 66 999999 69999761                  012345


Q ss_pred             EEEeCCCcEEEeeE-EEecCCCchh-hhhhCCCccCCCC---CceEEEEEEEecC----CCcceEEEecCCCceEEeecC
Q 010225          226 KLDLSDGTSLYAKL-VGADGGKSRV-RELAGFKTTGWSY---SQNAIICTVEHNK----ENYCAWQRFLPAGPIALLPIG  296 (514)
Q Consensus       226 ~v~~~~g~~~~ad~-V~AdG~~S~v-R~~l~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~p~~  296 (514)
                      .|.+.+|.++.||+ |+|||.+|.+ |+.++.....+..   ...++...+....    ........+.+.|++|++|++
T Consensus       211 ~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~  290 (526)
T 2pyx_A          211 KLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLP  290 (526)
T ss_dssp             EEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECS
T ss_pred             EEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCC
Confidence            77888877899999 9999999999 6667765432221   2234444444332    112223335578899999998


Q ss_pred             CCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccc
Q 010225          297 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE  376 (514)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (514)
                      ++.. +.+......      .+.++..+.+.+.+. .+++           .+.                      . ..
T Consensus       291 ~~~~-~~~v~~~~~------~~~~~~~~~l~~~l~-~~~~-----------~l~----------------------~-~~  328 (526)
T 2pyx_A          291 TRKG-VGYVYSSSH------TNDIDAQKTLFNYLG-VDGA-----------AAD----------------------K-LE  328 (526)
T ss_dssp             SEEE-EEEEECTTT------CCHHHHHHHHHHHHT-CCHH-----------HHH----------------------H-CC
T ss_pred             CceE-EEEEecCCC------CChHHHHHHHHHHHH-hcCc-----------ccc----------------------c-CC
Confidence            7533 333332211      233444555555443 1100           000                      0 01


Q ss_pred             eeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHH
Q 010225          377 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  456 (514)
Q Consensus       377 ~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~  456 (514)
                      ...+++.....+++..+||+|+|||||.++|+.|||+|+|++||..|+++|....    + ....+++.|+++|++++..
T Consensus       329 ~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~~~----~-~~~~~l~~Y~~~~~~~~~~  403 (526)
T 2pyx_A          329 PRQLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPPNR----M-VMDTISARVNERYQQHWQQ  403 (526)
T ss_dssp             CEEEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCSCH----H-HHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhhcC----C-cCHHHHHHHHHHHHHHHHH
Confidence            1134444445667788999999999999999999999999999999999886311    1 1367999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 010225          457 MMAVLDGFQKAYSV  470 (514)
Q Consensus       457 ~~~~~~~~~~~~~~  470 (514)
                      +.......+.+-..
T Consensus       404 ~~~~~~~~y~~~~r  417 (526)
T 2pyx_A          404 IIDFLKLHYVISQR  417 (526)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            88877777765443

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.97  E-value=4.9e-30  Score=273.43  Aligned_cols=347  Identities=11%  Similarity=0.072  Sum_probs=212.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCC--CCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPL--TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~--~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      +++||+||||||+||++|+.|++...  ..|++|+||||++.++.         ....+..+.+++++.|  ++   .+.
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~---------~~~~g~~l~~~~l~~l--l~---~~~   99 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA---------HTLSGACLDPRAFEEL--FP---DWK   99 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT---------TCCCCCEECTHHHHHH--CT---THH
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCC---------ccccccccCHHHHHHH--HH---HHH
Confidence            46899999999999999999998300  01899999999987632         1233556888877665  33   222


Q ss_pred             hhhccCcc------eEEEEeCCCcceeeecc-CC-CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCC
Q 010225          132 QHRHAYFD------KMQVWDYTGLGYTKYNA-RD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (514)
Q Consensus       132 ~~~~~~~~------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~  203 (514)
                      ..+. ++.      .+.+.....  ...++. .. .......+.++|..|.++|.+.+++.| ++|+++++|+++..++ 
T Consensus       100 ~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~l~~~~-  174 (584)
T 2gmh_A          100 EKGA-PLNTPVTEDRFGILTEKY--RIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALG-VEVYPGYAAAEILFHE-  174 (584)
T ss_dssp             HHTC-CCCEECCEEEEEEECSSC--EEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEECT-
T ss_pred             hcCC-ceeeeechhheeeeccCC--CccccccCccccccCCCEEEeHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEEcC-
Confidence            2222 221      233333321  122220 01 112233688999999999999999987 9999999999998721 


Q ss_pred             CCCcccCCCCccccccccCCeeEEEeC------C---------CcEEEeeE-EEecCCCchhhhhh----CCCccCCCCC
Q 010225          204 SSSISVDSTPSATTLFTKGHLAKLDLS------D---------GTSLYAKL-VGADGGKSRVRELA----GFKTTGWSYS  263 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~---------g~~~~ad~-V~AdG~~S~vR~~l----~~~~~~~~~~  263 (514)
                                       ++..+.|.+.      +         |.+++||+ |+|||.+|.+|+.+    +.........
T Consensus       175 -----------------~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~  237 (584)
T 2gmh_A          175 -----------------DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQT  237 (584)
T ss_dssp             -----------------TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCC
T ss_pred             -----------------CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchh
Confidence                             1122335544      2         46899999 99999999999887    4433211110


Q ss_pred             -ceEEEEEEEecC--CC-cceEEEec------CCCceEEeecC--CCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc
Q 010225          264 -QNAIICTVEHNK--EN-YCAWQRFL------PAGPIALLPIG--DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD  331 (514)
Q Consensus       264 -~~~~~~~~~~~~--~~-~~~~~~~~------~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (514)
                       ...+...+..+.  .. ......+.      ..+..+++|..  ++..+++|.........  ..++.+   .+.....
T Consensus       238 ~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~~---~l~~~~~  312 (584)
T 2gmh_A          238 YGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNP--YLSPFR---EFQRWKH  312 (584)
T ss_dssp             EEEEEEEEEECCGGGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCCT--TCCHHH---HHHHHTT
T ss_pred             HHhhhhhheecCcccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCcccc--cCChHH---HHHHHHh
Confidence             112222223322  11 22222221      12446778887  78888888765433111  112211   1222110


Q ss_pred             CCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccc
Q 010225          332 YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ  411 (514)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~Gq  411 (514)
                         .+           .+..++...            ++.. ...+..++......++|..+|++|||||||.++|+.||
T Consensus       313 ---~p-----------~i~~~l~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq  365 (584)
T 2gmh_A          313 ---HP-----------SIKPTLEGG------------KRIA-YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIK  365 (584)
T ss_dssp             ---ST-----------TTHHHHTTC------------EEEE-EEEEEEECCGGGGCCCCEETTEEECTTTTCCCBTTTTB
T ss_pred             ---Ch-----------HHHHHhCCC------------eEEE-ecceEccCCCcccCCccccCCEEEEcccccccCccccc
Confidence               01           111111100            0010 01111234344456778889999999999999999999


Q ss_pred             cchhhhHHHHHHHHHHHHhhhcCC-CcchHHH---HHHHHHHhhHH-HHHHHHHHHHHHHhhcC
Q 010225          412 GVNLGFGDASTLSRIIAEGIAVGA-DIGEASL---LKKYEAERKPA-NIVMMAVLDGFQKAYSV  470 (514)
Q Consensus       412 G~~~al~da~~La~~l~~~~~~~~-~~~~~~~---l~~Y~~~r~~~-~~~~~~~~~~~~~~~~~  470 (514)
                      |+|+||+||..||++|..+++.+. +.  ..+   |+.|+++|+++ +.+.+..++.+..+|+.
T Consensus       366 G~~~Ai~da~~LA~~L~~~~~~g~~~~--~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~~~~~~~  427 (584)
T 2gmh_A          366 GTHTAMKSGTLAAESIFNQLTSENLQS--KTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHG  427 (584)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCCCCCC--SSSSCCCTHHHHHHHTSHHHHHHHHTTTTTGGGGS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCCcch--hhhhhhHHHHHHHHHHhHHHHHHHHHhChhHHHHH
Confidence            999999999999999999886442 22  343   89999999988 57888888888887754

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.97  E-value=1.1e-29  Score=269.13  Aligned_cols=327  Identities=13%  Similarity=0.123  Sum_probs=217.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHH-HHHHcCCcHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQY  129 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~  129 (514)
                      ..+||+|||||++|+++|+.|++   .    |++|+|||+...+           ..+.+..+.+.... +++.+|+.+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~----G~~V~liE~~~~~-----------~~~~g~~~~~~~~~~~l~~lG~~~~   68 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ----QANITLIESAAIP-----------RIGVGEATIPSLQKVFFDFLGIPER   68 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS----SCEEEEEECSSSC-----------CCCSCEECCTHHHHHTHHHHTCCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC----CCEEEEECCCCCC-----------CcCCCcccchhHHHHHHHHhCCCHH
Confidence            46899999999999999999999   7    8999999997644           12236778889998 9999998765


Q ss_pred             --HHhhhccCc-ceEEEEeC---------------CCcce----eeec-----cC----CCC------------------
Q 010225          130 --VQQHRHAYF-DKMQVWDY---------------TGLGY----TKYN-----AR----DVN------------------  160 (514)
Q Consensus       130 --~~~~~~~~~-~~~~~~~~---------------~~~~~----~~~~-----~~----~~~------------------  160 (514)
                        +..... .+ ..+.+.+.               .+...    ..+.     ..    ...                  
T Consensus        69 ~~~~~~~~-~~~~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p  147 (538)
T 2aqj_A           69 EWMPQVNG-AFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAP  147 (538)
T ss_dssp             HHGGGGTC-EEECEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCS
T ss_pred             HHHHhcCc-hhhCCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccch
Confidence              333221 11 11121111               11000    0000     00    000                  


Q ss_pred             -------CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc
Q 010225          161 -------KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT  233 (514)
Q Consensus       161 -------~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~  233 (514)
                             ....++.+++..|.+.|.+.+++.| ++++++ +|++++..                  +++..+.|.+.+|.
T Consensus       148 ~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~~~~~-~v~~i~~~------------------~~g~~~~v~~~~g~  207 (538)
T 2aqj_A          148 CLSDGTRQMSHAWHFDAHLVADFLKRWAVERG-VNRVVD-EVVDVRLN------------------NRGYISNLLTKEGR  207 (538)
T ss_dssp             BCTTCCBCSCCEEEECHHHHHHHHHHHHHHTT-CEEEEC-CEEEEEEC------------------TTSCEEEEEETTSC
T ss_pred             HhhcCCcCCCccEEEeHHHHHHHHHHHHHHCC-CEEEEe-eEeEEEEc------------------CCCcEEEEEECCCc
Confidence                   1244788999999999999999877 999999 89999761                  01234678888888


Q ss_pred             EEEeeE-EEecCCCchhhh-hhCCCccCCC---CCceEEEEEEEecCC----CcceEEEecCCCceEEeecCCCceEEEE
Q 010225          234 SLYAKL-VGADGGKSRVRE-LAGFKTTGWS---YSQNAIICTVEHNKE----NYCAWQRFLPAGPIALLPIGDNFSNIVW  304 (514)
Q Consensus       234 ~~~ad~-V~AdG~~S~vR~-~l~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~p~~~~~~~~~~  304 (514)
                      ++.||+ |+|||.+|.+|+ .++.....+.   ....++...++...+    .......+.+.|++|++|.+++ ..+.+
T Consensus       208 ~i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~g~  286 (538)
T 2aqj_A          208 TLEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGR-FGSGY  286 (538)
T ss_dssp             EECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTE-EEEEE
T ss_pred             EEEeCEEEECCCCchhhHHHHhCCCccccccccccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCc-eEEEE
Confidence            899999 999999999965 4565443322   122344434443211    1122234567889999999874 33444


Q ss_pred             EcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeeccc
Q 010225          305 TMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL  384 (514)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  384 (514)
                      .....      ..++++..+.+.+.+. +  ++ .                                   .....+++..
T Consensus       287 v~~~~------~~~~~~~~~~l~~~~~-~--~~-~-----------------------------------~~~~~~~~~~  321 (538)
T 2aqj_A          287 VFSSH------FTSRDQATADFLKLWG-L--SD-N-----------------------------------QPLNQIKFRV  321 (538)
T ss_dssp             EECTT------TSCHHHHHHHHHHHHT-C--CT-T-----------------------------------CCCEEEECCC
T ss_pred             EEcCC------CCChHHHHHHHHHHhc-C--CC-C-----------------------------------CCceEEeecc
Confidence            33221      1244566666666553 1  00 0                                   0011234444


Q ss_pred             ccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHH
Q 010225          385 KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF  464 (514)
Q Consensus       385 ~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~  464 (514)
                      ...+++..+||+|||||||.++|+.|||+|+|++||..|+++|..    +.+  ...+|+.|++.|++++..+.......
T Consensus       322 ~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~----~~~--~~~~l~~Y~~~~~~~~~~~~~~~~~~  395 (538)
T 2aqj_A          322 GRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD----TSF--DPRLSDAFNAEIVHMFDDCRDFVQAH  395 (538)
T ss_dssp             EEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB----TTC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc----cCC--CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445667889999999999999999999999999999999988753    222  36799999999999998888877666


Q ss_pred             HHhh
Q 010225          465 QKAY  468 (514)
Q Consensus       465 ~~~~  468 (514)
                      +..-
T Consensus       396 y~~~  399 (538)
T 2aqj_A          396 YFTT  399 (538)
T ss_dssp             HHTC
T ss_pred             hccc
Confidence            6553

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.97  E-value=2.1e-29  Score=267.45  Aligned_cols=360  Identities=13%  Similarity=0.146  Sum_probs=232.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHH-HHHHcCCcHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQY  129 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~  129 (514)
                      ..+||+|||||++|+++|+.|++   .    |++|+|||+.+.+           ..+.+..+.+++.. +++.+|+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~----G~~V~liE~~~~~-----------~~~~g~~~~p~~~~~~l~~lGi~~~   88 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQG----TADITLLQAPDIP-----------TLGVGEATIPNLQTAFFDFLGIPED   88 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTT----SSEEEEEECCCCC-----------CCCCCEECCTHHHHHTHHHHTCCHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC----CCcEEEEeCCCCC-----------ccceeeeechhHHHHHHHHhCCChH
Confidence            56899999999999999999999   7    8999999997644           12336788899999 9999999876


Q ss_pred             --HHhhhccCcceEEE--EeCC-------------Ccce-eeec-----------------------c------------
Q 010225          130 --VQQHRHAYFDKMQV--WDYT-------------GLGY-TKYN-----------------------A------------  156 (514)
Q Consensus       130 --~~~~~~~~~~~~~~--~~~~-------------~~~~-~~~~-----------------------~------------  156 (514)
                        +..........+.+  |...             .... ..+.                       .            
T Consensus        89 ~~~~~~~~~~~~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~  168 (550)
T 2e4g_A           89 EWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPV  168 (550)
T ss_dssp             HHHHHTTCEEECEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHH
T ss_pred             HHHHhcCCeEEEeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhh
Confidence              44332211122222  2111             0000 0000                       0            


Q ss_pred             -CCC-------C---CcccEEEEehHHHHHHHHHHHhcC-CCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe
Q 010225          157 -RDV-------N---KEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL  224 (514)
Q Consensus       157 -~~~-------~---~~~~~~~i~r~~l~~~L~~~~~~~-g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (514)
                       .+.       .   ....++.+++..|.+.|.+.+++. | ++++++ +|++++..                  +++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~G-v~i~~~-~V~~i~~~------------------~~g~~  228 (550)
T 2e4g_A          169 ILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLG-VRHVED-RVEHVQRD------------------ANGNI  228 (550)
T ss_dssp             HHHTTBCSBCTTSCBCSCCEEEECHHHHHHHHHHHHHHHSC-CEEEEC-CEEEEEEC------------------TTSCE
T ss_pred             HHHhhhhhHhhcCCCCCCcceEEcHHHHHHHHHHHHHhcCC-cEEEEC-eEeEEEEc------------------CCCCE
Confidence             000       0   133468899999999999999988 6 999999 99999761                  02234


Q ss_pred             eEEEeCCCcEEEeeE-EEecCCCchh-hhhhCCCccCCC---CCceEEEEEEEecC----CCcceEEEecCCCceEEeec
Q 010225          225 AKLDLSDGTSLYAKL-VGADGGKSRV-RELAGFKTTGWS---YSQNAIICTVEHNK----ENYCAWQRFLPAGPIALLPI  295 (514)
Q Consensus       225 ~~v~~~~g~~~~ad~-V~AdG~~S~v-R~~l~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~p~  295 (514)
                      +.|.+.+|.++.||+ |+|||.+|.+ ++.++.....+.   .....+...++...    ..........+.|++|++|.
T Consensus       229 ~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl  308 (550)
T 2e4g_A          229 ESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPM  308 (550)
T ss_dssp             EEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEC
T ss_pred             EEEEECCCCEEECCEEEECCCCchhhHHHHhCCCcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccC
Confidence            678888898899999 9999999999 556666543221   12223333333321    11222233457889999999


Q ss_pred             CCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeecc
Q 010225          296 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS  375 (514)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (514)
                      ++. ..+.+.....      ..+.++..+.+.+.+.  ..+.                            +        .
T Consensus       309 ~~~-~~~g~v~~~~------~~~~~~~~~~l~~~~~--~~p~----------------------------l--------~  343 (550)
T 2e4g_A          309 LGR-FGTGYVYSSR------FATEDEAVREFCEMWH--LDPE----------------------------T--------Q  343 (550)
T ss_dssp             SSE-EEEEEEECTT------TSCHHHHHHHHHHHTT--CCTT----------------------------T--------S
T ss_pred             CCc-cceEEEEecC------CCChHHHHHHHHHhhC--cCcc----------------------------c--------C
Confidence            773 3333333211      1345566666666442  0000                            0        0


Q ss_pred             ceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHH
Q 010225          376 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI  455 (514)
Q Consensus       376 ~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~  455 (514)
                      ....+++.....+.+..+|++|||||||.++|+.|||+|+|++||..|+++|..    +..  .+.+|+.|+++|++++.
T Consensus       344 ~~~~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~----~~~--~~~~l~~Y~~~~~~~~~  417 (550)
T 2e4g_A          344 PLNRIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD----KSL--NPVLTARFNREIETMFD  417 (550)
T ss_dssp             CCEEEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC----TTC--CHHHHHHHHHHHHHHHH
T ss_pred             CCceEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc----cCC--CHHHHHHHHHHHHHHHH
Confidence            001123333334556789999999999999999999999999999999988753    222  37899999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-chHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          456 VMMAVLDGFQKAYSVDF-GPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       456 ~~~~~~~~~~~~~~~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      .+.......+.+-.... ++....+     .+..-+.+++.+-.+..+..
T Consensus       418 ~i~~~~~~~y~~~~r~~~~fw~~~~-----~~~~p~~l~~~~~~~~~~~~  462 (550)
T 2e4g_A          418 DTRDFIQAHFYFSPRTDTPFWRANK-----ELRLADGMQEKIDMYRAGMA  462 (550)
T ss_dssp             HHHHHHHHHHHTCCCCSSHHHHHHT-----TSCCCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHhh-----cCCCCHHHHHHHHHHHhcCC
Confidence            99998888877654432 3322211     23333466666666655543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.95  E-value=1.8e-27  Score=245.12  Aligned_cols=369  Identities=12%  Similarity=0.073  Sum_probs=212.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC--cHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~  130 (514)
                      .+++||+||||||+|+++|+.|++.    |++|+|||+++......      .....+..+...++..++.+|+  |...
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~~------g~~~~~~~~~~~~~~~~~~lg~~~~~~~   89 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQH----DVDVTVYTDRKPDEYSG------LRLLNTVAHNAVTVQREVALDVNEWPSE   89 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHT----TCEEEEEESCCGGGSTT------SCCCCCCCBCHHHHHHHHHTTCCCSCHH
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHC----CCeEEEEcCCChHhhcc------cccccchhccchhhhhhhhcChhhhhhh
Confidence            3557999999999999999999996    99999999987432110      0111123445667777778764  3322


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCC-eeEEEeeCCCCCCccc
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS-RLTSMALLPSSSSISV  209 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~-~v~~v~~~~~~~~~~~  209 (514)
                          ...+..+.++..... ...+...   ....++.+++..+...|.+.+++.| +++++.. .+.+++.         
T Consensus        90 ----~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~G-v~v~~~~v~~~~l~~---------  151 (430)
T 3ihm_A           90 ----EFGYFGHYYYVGGPQ-PMRFYGD---LKAPSRAVDYRLYQPMLMRALEARG-GKFCYDAVSAEDLEG---------  151 (430)
T ss_dssp             ----HHCEEEEEEEECSSS-CEEEEEE---EEEEEBEECHHHHHHHHHHHHHHTT-CEEEECCCCGGGHHH---------
T ss_pred             ----cccccceeEEECCCC-ccccchh---cCCcceeecHHHHHHHHHHHHHHcC-CEEEEEecchhhhhh---------
Confidence                124555555543321 2233211   1234578999999999999999887 8887732 1222211         


Q ss_pred             CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhC-CCccCCCCCce-EEEEEEEe-cCC--CcceEEE
Q 010225          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAG-FKTTGWSYSQN-AIICTVEH-NKE--NYCAWQR  283 (514)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~-~~~~~~~~~~~-~~~~~~~~-~~~--~~~~~~~  283 (514)
                                     .        ...+|+ |+|||.+|.+|.... ........... .....+.. ..+  ....+..
T Consensus       152 ---------------~--------~~~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~  208 (430)
T 3ihm_A          152 ---------------L--------SEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSF  208 (430)
T ss_dssp             ---------------H--------HTTSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEE
T ss_pred             ---------------h--------cccCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeee
Confidence                           0        124899 999999999874331 11122222222 22222221 111  2334455


Q ss_pred             ecCCCceEEeecC--CCce--EEEEEcCccchHHhhCC----CHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccC
Q 010225          284 FLPAGPIALLPIG--DNFS--NIVWTMNPKDASDCKSM----NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD  355 (514)
Q Consensus       284 ~~~~g~~~~~p~~--~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (514)
                      +...|.++++|..  ++..  .++|..+....+.....    +++++++.+.+.+. .|.+.           +..++..
T Consensus       209 ~~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~  276 (430)
T 3ihm_A          209 SPGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLG-KHHPS-----------VAERIDP  276 (430)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHH-HHCHH-----------HHTTBCT
T ss_pred             cCCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHH-HhCcc-----------HHHHHhh
Confidence            5566788888863  2322  33455554333333333    67777777766554 22221           0010100


Q ss_pred             ccccccccccCCCceeeeccceeeeecccccccccccCcEEE-EcccccccCCcccccchhhhHHHHHHHHHHHHhhhcC
Q 010225          356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL-IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG  434 (514)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~L-vGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~  434 (514)
                      ...   ...+.+..+..    ...+|+...+..+|..++++| +|||||.++|+.|||+|+||+||..|+++|...   +
T Consensus       277 ~~~---~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~---~  346 (430)
T 3ihm_A          277 AEF---DLANSSLDILQ----GGVVPAFRDGHATLNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH---S  346 (430)
T ss_dssp             TTC---EESSSTTSEEE----ECCCCEEBCSEEECTTSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC---S
T ss_pred             chh---ccccCccceee----cceeecccccccccCCCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc---C
Confidence            000   00000000000    012454455567788899998 999999999999999999999999999999985   2


Q ss_pred             CCcchHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhh
Q 010225          435 ADIGEASLLKKYEAERK-PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS  501 (514)
Q Consensus       435 ~~~~~~~~l~~Y~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~  501 (514)
                       ++  ..+|..|+.+|+ .+.......++.+..-......   .+ ..++..+...|.+.+.+...++
T Consensus       347 -~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~  407 (430)
T 3ihm_A          347 -VY--DLRFSEHLERRRQDRVLCATRWTNFTLSALSALPP---EF-LAFLQILSQSREMADEFTDNFN  407 (430)
T ss_dssp             -CC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHCHHHHHHHHHGGG
T ss_pred             -CH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcH---HH-HHHHHHHhhCHHHHHHHHHhCC
Confidence             33  679999999998 6666666666555421111111   12 2344445566777776665543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.90  E-value=1.1e-22  Score=212.86  Aligned_cols=314  Identities=19%  Similarity=0.181  Sum_probs=186.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.+.++           ..+...+.+.+.+.|+.+|+++....
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~----G~~V~liEk~~~~g-----------~~~~~~~~~~~~~~l~~~g~~~~~~~  154 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL----GARVVLVEKRIKFS-----------RHNVLHLWPFTIHDLRALGAKKFYGR  154 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCSSCC-----------CCCEEECCHHHHHHHHTTTHHHHCTT
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC----CCeEEEEEeccccC-----------CCCcccCChhHHHHHHHcCCcccccc
Confidence            4578999999999999999999996    99999999998652           12456788999999998887543210


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           +.                .      .....+++..+...|.+.+++.+ ++|+++++|++++.         +.+
T Consensus       155 -----~~----------------~------~~~~~~~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~---------~~~  197 (497)
T 2bry_A          155 -----FC----------------T------GTLDHISIRQLQLLLLKVALLLG-VEIHWGVKFTGLQP---------PPR  197 (497)
T ss_dssp             -----TT----------------C------TTCCEEEHHHHHHHHHHHHHHTT-CEEEESCEEEEEEC---------CCS
T ss_pred             -----cc----------------c------cccccCCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------ecC
Confidence                 00                0      00124678999999999999876 99999999999975         100


Q ss_pred             CccccccccCCeeEEEe--C-CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEe---cC----CC-c
Q 010225          213 PSATTLFTKGHLAKLDL--S-DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH---NK----EN-Y  278 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~--~-~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~---~~----~~-~  278 (514)
                              +++.+.|.+  . +|  .++.||+ |+|||.+|.+|+..+....+... .......+..   ..    +. .
T Consensus       198 --------~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~-~~~~~~l~~~~~~~~~~~~~~~G  268 (497)
T 2bry_A          198 --------KGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLA-IGITANFVNGRTVEETQVPEISG  268 (497)
T ss_dssp             --------TTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEEEEEECSCC-EEEEEEEECCCCHHHHTSCCBCC
T ss_pred             --------CCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccchhhcCcee-EeeeeeeeeeccccccchhhcCc
Confidence                    124466666  4 56  4699999 99999999999877665554431 1111112221   00    00 1


Q ss_pred             ceEE---EecC-----CC-ce-EEeecCCCceEEEEEcCc-------------cchHHhh---CCCHHHHHHHHH--Hhh
Q 010225          279 CAWQ---RFLP-----AG-PI-ALLPIGDNFSNIVWTMNP-------------KDASDCK---SMNEDDFVKILN--HAL  330 (514)
Q Consensus       279 ~~~~---~~~~-----~g-~~-~~~p~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~~~~~~--~~~  330 (514)
                      ..+.   .+++     .| .. .++|.+++...++.....             .......   ..+.+.+.....  ..|
T Consensus       269 ~~~~~~~~~f~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  348 (497)
T 2bry_A          269 VARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADF  348 (497)
T ss_dssp             ----CCSSHHHHHHHHHCCCEEEEEEEESSEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHH
T ss_pred             eEEecChhhhHhHHhhcCCCcccccccCCCeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhcccccc
Confidence            1110   0110     11 11 134444443322221110             0011111   113233321111  111


Q ss_pred             cCCCCCCCCCCCCCcccccc---ccccCccccccccccCCCceeeeccceeeeecccccccccccCc-EEEEccccc-cc
Q 010225          331 DYGYGPHPKSISSGSVDMFS---WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKR-VVLIGDAAH-TV  405 (514)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-v~LvGDAAh-~~  405 (514)
                      .....          .+.+.   ..+|.           |..-.........|++..+.+.+|..|| ++|+||||| .+
T Consensus       349 ~~~~~----------~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~r~a~~~~~gRr~~l~Gda~~~~~  407 (497)
T 2bry_A          349 ATHGK----------LGKLEFAQDARGR-----------PDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEPF  407 (497)
T ss_dssp             HTTTT----------TCSCCBCBCTTSS-----------BCEEEEECSEEEEESCSEEEEEETTEEEEEEECGGGTBCCC
T ss_pred             chhhc----------cccchhhhhccCC-----------CCCceeeeEEEEecchhhHHHHhcCCcccceEeccccccCc
Confidence            10000          00011   11111           0000101233556899999999999998 999999999 45


Q ss_pred             CCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHH
Q 010225          406 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  456 (514)
Q Consensus       406 ~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~  456 (514)
                      .| .|||+|++|+||..|++.|...++ +.  ....+|    .+|++.++.
T Consensus       408 ~p-~g~G~n~g~~~a~~l~~~l~~~~~-g~--~~~~~l----~~r~~~~~~  450 (497)
T 2bry_A          408 WP-LGTGVARGFLAAFDAAWMVKRWAE-GA--GPLEVL----AERESLYQL  450 (497)
T ss_dssp             GG-GCCHHHHHHHHHHHHHHHHHHHHT-TC--CHHHHH----HHHHHHHTT
T ss_pred             Cc-cccchhhHHHHHHHHHHHHHHHhC-CC--Cccchh----hhHHHHhhh
Confidence            55 999999999999999999999864 32  234555    666665543

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.64  E-value=2.4e-15  Score=151.99  Aligned_cols=191  Identities=14%  Similarity=0.077  Sum_probs=110.7

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+.+.|.+.+++.| ++++++++|++++.                    .++.+.|.+.+| ++.||. |.|+|.
T Consensus       160 ~~~~~~~~~~l~~~~~~~g-~~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~  217 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLG-AEIFEHTPVLHVER--------------------DGEALFIKTPSG-DVWANHVVVASGV  217 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTT-CEEETTCCCCEEEC--------------------SSSSEEEEETTE-EEEEEEEEECCGG
T ss_pred             EEcHHHHHHHHHHHHHHCC-CEEEcCCcEEEEEE--------------------ECCEEEEEcCCc-eEEcCEEEECCCh
Confidence            4677899999999999887 99999999999976                    334567777777 799999 999999


Q ss_pred             Cch-hhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHH---
Q 010225          246 KSR-VRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNED---  320 (514)
Q Consensus       246 ~S~-vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---  320 (514)
                      +|. +.+.++.......  .......++..... ...  .+  ....|++|..++...+........  .....+.+   
T Consensus       218 ~s~~l~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~--~~--~~~~~~~p~~~g~~~vG~~~~~~~--~~~~~~~~~~~  289 (382)
T 1ryi_A          218 WSGMFFKQLGLNNAFLP--VKGECLSVWNDDIPLTKT--LY--HDHCYIVPRKSGRLVVGATMKPGD--WSETPDLGGLE  289 (382)
T ss_dssp             GTHHHHHHTTCCCCCEE--EEEEEEEEECCSSCCCSE--EE--ETTEEEEECTTSEEEEECCCEETC--CCCSCCHHHHH
T ss_pred             hHHHHHHhcCCCCceec--cceEEEEECCCCCCccce--EE--cCCEEEEEcCCCeEEEeecccccC--CCCCCCHHHHH
Confidence            987 7777664332111  11222222222111 111  12  236788898776544443221111  11112222   


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcc
Q 010225          321 DFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGD  400 (514)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGD  400 (514)
                      .+.+.+.+.++                   .+..           .  .+..  .+...+|        +..++..++|+
T Consensus       290 ~l~~~~~~~~p-------------------~l~~-----------~--~~~~--~w~g~~~--------~t~d~~p~ig~  327 (382)
T 1ryi_A          290 SVMKKAKTMLP-------------------AIQN-----------M--KVDR--FWAGLRP--------GTKDGKPYIGR  327 (382)
T ss_dssp             HHHHHHHHHCG-------------------GGGG-----------S--EEEE--EEEEEEE--------ECSSSCCEEEE
T ss_pred             HHHHHHHHhCC-------------------CcCC-----------C--ceee--EEEEecc--------cCCCCCcEecc
Confidence            33333333332                   0000           0  0000  1111122        23355667787


Q ss_pred             cc-----cccCCcccccchhhhHHHHHHHHHHHH
Q 010225          401 AA-----HTVHPLAGQGVNLGFGDASTLSRIIAE  429 (514)
Q Consensus       401 AA-----h~~~P~~GqG~~~al~da~~La~~l~~  429 (514)
                      +.     ....++.|.|+.+|...|..|++.|..
T Consensus       328 ~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          328 HPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             ETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             CCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence            53     446778899999999999988888865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.61  E-value=2.8e-14  Score=145.23  Aligned_cols=116  Identities=11%  Similarity=0.045  Sum_probs=76.4

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+.+.|.+.+++.| ++++++++|++++.                   +.+..+.|.+.+| ++.||. |.|+|.
T Consensus       170 ~~~~~~~~~~l~~~~~~~g-~~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g-~~~a~~vV~a~G~  228 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMG-VDIIQNCEVTGFIK-------------------DGEKVTGVKTTRG-TIHAGKVALAGAG  228 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------SSSBEEEEEETTC-CEEEEEEEECCGG
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEcCCeEEEEEE-------------------eCCEEEEEEeCCc-eEECCEEEECCch
Confidence            3566789999999999887 99999999999986                   1223466777777 699999 999999


Q ss_pred             Cc-hhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceEEeecCCCceEEEEEc
Q 010225          246 KS-RVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTM  306 (514)
Q Consensus       246 ~S-~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~  306 (514)
                      +| .+++.++...+...+....+... +.........  +..+..+++.|..++...+....
T Consensus       229 ~s~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~y~~p~~~g~~~ig~~~  287 (405)
T 2gag_B          229 HSSVLAEMAGFELPIQSHPLQALVSE-LFEPVHPTVV--MSNHIHVYVSQAHKGELVMGAGI  287 (405)
T ss_dssp             GHHHHHHHHTCCCCEEEEEEEEEEEE-EBCSCCCSEE--EETTTTEEEEECTTSEEEEEEEE
T ss_pred             hHHHHHHHcCCCCCccccceeEEEec-CCccccCceE--EeCCCcEEEEEcCCCcEEEEecc
Confidence            98 68887776543322211111111 1111111121  23456788888877766665544

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.58  E-value=2.2e-13  Score=137.49  Aligned_cols=68  Identities=12%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCCcEEEeeE-EEecC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG  244 (514)
                      .++...+.+.|.+.+++.| ++|+++++|++++.                    +++.+. |.+.+| ++.||. |.|+|
T Consensus       145 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~i~~--------------------~~~~v~gv~~~~g-~i~a~~VV~A~G  202 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYG-AKLLEYTEVKGFLI--------------------ENNEIKGVKTNKG-IIKTGIVVNATN  202 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------SSSBEEEEEETTE-EEECSEEEECCG
T ss_pred             eECHHHHHHHHHHHHHHCC-CEEECCceEEEEEE--------------------ECCEEEEEEECCc-EEECCEEEECcc
Confidence            4678999999999999987 99999999999987                    334555 777777 799999 99999


Q ss_pred             CCc-hhhhhhCCC
Q 010225          245 GKS-RVRELAGFK  256 (514)
Q Consensus       245 ~~S-~vR~~l~~~  256 (514)
                      .+| .+.+.++..
T Consensus       203 ~~s~~l~~~~g~~  215 (382)
T 1y56_B          203 AWANLINAMAGIK  215 (382)
T ss_dssp             GGHHHHHHHHTCC
T ss_pred             hhHHHHHHHcCCC
Confidence            998 566666654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.56  E-value=1.6e-13  Score=139.34  Aligned_cols=170  Identities=17%  Similarity=0.169  Sum_probs=101.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeC-----hhh-HHHHHHcCCc
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT-----PAT-ISFFKEIGAW  127 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~-~~~l~~lgl~  127 (514)
                      ..+||+|||||++|+++|+.|++.    |++|+||||.......+.      .......+.     +.. ...++.+.+|
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~----G~~V~vlE~~~~~~~~ga------s~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAER----GHRVLVLERHTFFNENGG------TSGAERHWRLQYTQEDLFRLTLETLPLW   72 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCTTCSSSS------CCSSEEEECSCCSSHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCCCCCCC------CCCcCeEEEeccCcchhhhHHHHHHHHH
Confidence            358999999999999999999996    999999999886532121      000011110     111 1112223344


Q ss_pred             HHHHhhhccC----cceEEEEeCCC------------------cceeeeccC-------CC--CCc------ccEEEEeh
Q 010225          128 QYVQQHRHAY----FDKMQVWDYTG------------------LGYTKYNAR-------DV--NKE------ILGCVVEN  170 (514)
Q Consensus       128 ~~~~~~~~~~----~~~~~~~~~~~------------------~~~~~~~~~-------~~--~~~------~~~~~i~r  170 (514)
                      +++.+.....    ...+.+.....                  .....+...       ..  ...      +.+..++.
T Consensus        73 ~~l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~  152 (397)
T 2oln_A           73 RALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDV  152 (397)
T ss_dssp             HHHHHHHTCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEH
T ss_pred             HHHHHHhCccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcH
Confidence            4443321101    11122221111                  000000000       00  000      11235678


Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC-ch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK-SR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~-S~  248 (514)
                      ..+...|.+.+++.| ++|+++++|++++.                    +++.+.|.+.+| ++.||. |.|+|.+ +.
T Consensus       153 ~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~  210 (397)
T 2oln_A          153 RGTLAALFTLAQAAG-ATLRAGETVTELVP--------------------DADGVSVTTDRG-TYRAGKVVLACGPYTND  210 (397)
T ss_dssp             HHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------ETTEEEEEESSC-EEEEEEEEECCGGGHHH
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------cCCeEEEEECCC-EEEcCEEEEcCCcChHH
Confidence            889999999999887 99999999999986                    345677777666 699999 9999999 45


Q ss_pred             hhhhhCC
Q 010225          249 VRELAGF  255 (514)
Q Consensus       249 vR~~l~~  255 (514)
                      +++.++.
T Consensus       211 l~~~~g~  217 (397)
T 2oln_A          211 LLEPLGA  217 (397)
T ss_dssp             HHGGGTC
T ss_pred             HhhhcCC
Confidence            7777764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.55  E-value=1.2e-13  Score=139.77  Aligned_cols=169  Identities=14%  Similarity=0.179  Sum_probs=99.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeC------hhhHHH-HHHcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT------PATISF-FKEIGA  126 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~-l~~lgl  126 (514)
                      +++||+|||||++|+++|+.|++.    |++|+|||++...+..+..      ...+..+.      +...++ .+.+.+
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~----G~~V~vie~~~~~~~~g~s------~~~~~~~~~~~~~~~~~~~l~~~~~~~   71 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQ----GVKTLLVDAFDPPHTNGSH------HGDTRIIRHAYGEGREYVPLALRSQEL   71 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCSSCSSSSS------CSSEEEECSSCTTCGGGHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCCCCCCCC------CCcchhhhhhhcCCchHHHHHHHHHHH
Confidence            368999999999999999999996    9999999998866411110      00111111      111111 122233


Q ss_pred             cHHHHhhhc----cCcceEEEEeC-C--------------CcceeeeccC-------CC--CCc------ccEEEEehHH
Q 010225          127 WQYVQQHRH----AYFDKMQVWDY-T--------------GLGYTKYNAR-------DV--NKE------ILGCVVENKV  172 (514)
Q Consensus       127 ~~~~~~~~~----~~~~~~~~~~~-~--------------~~~~~~~~~~-------~~--~~~------~~~~~i~r~~  172 (514)
                      ++.+.+...    .....+.+... .              +.....+...       ..  ...      +....++...
T Consensus        72 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  151 (389)
T 2gf3_A           72 WYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSEN  151 (389)
T ss_dssp             HHHHHHHCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHH
T ss_pred             HHHHHHHhCCcceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHH
Confidence            344332111    01111222111 0              0000000000       00  000      1124567789


Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch-hh
Q 010225          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR-VR  250 (514)
Q Consensus       173 l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~-vR  250 (514)
                      +...|.+.+++.| ++++++++|++++.                    .++.+.|.+.+| ++.||. |.|+|.+|. +.
T Consensus       152 ~~~~l~~~~~~~G-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~  209 (389)
T 2gf3_A          152 CIRAYRELAEARG-AKVLTHTRVEDFDI--------------------SPDSVKIETANG-SYTADKLIVSMGAWNSKLL  209 (389)
T ss_dssp             HHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSCEEEEETTE-EEEEEEEEECCGGGHHHHG
T ss_pred             HHHHHHHHHHHCC-CEEEcCcEEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecCccHHHHh
Confidence            9999999999987 99999999999987                    334577777666 699999 999999875 44


Q ss_pred             hhhC
Q 010225          251 ELAG  254 (514)
Q Consensus       251 ~~l~  254 (514)
                      +.++
T Consensus       210 ~~~g  213 (389)
T 2gf3_A          210 SKLN  213 (389)
T ss_dssp             GGGT
T ss_pred             hhhc
Confidence            4444

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.54  E-value=8.2e-13  Score=126.09  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=34.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      |++||+||||||+||++|+.|+++    |++|+||||++.++
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~----G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAA----GHQVHLFDKSRGSG   38 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence            458999999999999999999997    99999999998774

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.54  E-value=8.7e-14  Score=140.25  Aligned_cols=69  Identities=17%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|++.+| ++.||. |.|+|
T Consensus       149 ~~~~~~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~t~~g-~i~a~~VV~A~G  206 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQ-GQVLCNHEALEIRR--------------------VDGAWEVRCDAG-SYRAAVLVNAAG  206 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEESSCCCCEEEE--------------------ETTEEEEECSSE-EEEESEEEECCG
T ss_pred             ceECHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEE--------------------eCCeEEEEeCCC-EEEcCEEEECCC
Confidence            45788999999999999988 99999999999987                    345688888877 799999 99999


Q ss_pred             CCc-hhhhhhCCC
Q 010225          245 GKS-RVRELAGFK  256 (514)
Q Consensus       245 ~~S-~vR~~l~~~  256 (514)
                      .+| .+.+.++..
T Consensus       207 ~~s~~l~~~~g~~  219 (381)
T 3nyc_A          207 AWCDAIAGLAGVR  219 (381)
T ss_dssp             GGHHHHHHHHTCC
T ss_pred             hhHHHHHHHhCCC
Confidence            998 466666654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.52  E-value=1.5e-12  Score=141.26  Aligned_cols=63  Identities=17%  Similarity=0.172  Sum_probs=55.4

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEec
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      +..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|.+.+|.++.||. |.|+
T Consensus       411 ~g~v~p~~l~~aL~~~a~~~G-v~i~~~t~V~~l~~--------------------~~~~v~V~t~~G~~i~Ad~VVlAt  469 (676)
T 3ps9_A          411 GGWLCPAELTRNVLELAQQQG-LQIYYQYQLQNFSR--------------------KDDCWLLNFAGDQQATHSVVVLAN  469 (676)
T ss_dssp             CEEECHHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------ETTEEEEEETTSCEEEESEEEECC
T ss_pred             CeeeCHHHHHHHHHHHHHhCC-CEEEeCCeeeEEEE--------------------eCCeEEEEECCCCEEECCEEEECC
Confidence            345788999999999999988 99999999999987                    4456888888888899999 9999


Q ss_pred             CCCch
Q 010225          244 GGKSR  248 (514)
Q Consensus       244 G~~S~  248 (514)
                      |.+|.
T Consensus       470 G~~s~  474 (676)
T 3ps9_A          470 GHQIS  474 (676)
T ss_dssp             GGGGG
T ss_pred             Ccchh
Confidence            99986

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.50  E-value=2e-12  Score=135.37  Aligned_cols=116  Identities=17%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE-
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL-  239 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~-  239 (514)
                      ..++...+...|.+.+.+.| ++|+++++|++++.                    +++.+.|.+   .+|+  ++.||. 
T Consensus       144 g~v~~~~l~~~l~~~a~~~G-v~i~~~~~V~~l~~--------------------~~~~~~V~~~d~~~G~~~~i~A~~V  202 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKG-GEVLTRTRATSARR--------------------ENGLWIVEAEDIDTGKKYSWQARGL  202 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------------ETTEEEEEEEETTTCCEEEEEESCE
T ss_pred             CEEcHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEECCCCCEEEEECCEE
Confidence            34789999999999999988 99999999999987                    335566666   3565  799999 


Q ss_pred             EEecCCCch-hhhh-hCCCccCCCCCceEEEEEEEecCCCcceEEEecC-CCceEEeecCCCceEE
Q 010225          240 VGADGGKSR-VREL-AGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP-AGPIALLPIGDNFSNI  302 (514)
Q Consensus       240 V~AdG~~S~-vR~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~  302 (514)
                      |+|+|.+|. +++. ++......-.........++...+....+....+ +..++++|..++...+
T Consensus       203 V~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~~~~~~~~~~~~~~~~~~dg~~~~~~P~~~g~~~i  268 (501)
T 2qcu_A          203 VNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSII  268 (501)
T ss_dssp             EECCGGGHHHHHHHHTCCCCSSCBCCEEEEEEEEECSSSCSCEEEEECTTSCEEEEEEETTTEEEE
T ss_pred             EECCChhHHHHHHHhccCCcccccccceeEEEEECCCCCCceEEEeecCCCCEEEEEEcCCCcEEE
Confidence            999999986 4554 5432111112222222233322222222111123 3467888987665433

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.49  E-value=2e-12  Score=140.59  Aligned_cols=62  Identities=13%  Similarity=0.065  Sum_probs=53.3

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc-EEEeeE-EEec
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKL-VGAD  243 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~-V~Ad  243 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|.+.+|. ++.||. |.|+
T Consensus       407 g~v~p~~l~~aL~~~a~~~G-v~i~~~t~V~~l~~--------------------~~~~v~V~t~~G~~~i~Ad~VVlAt  465 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNG-MTCHYQHELQRLKR--------------------IDSQWQLTFGQSQAAKHHATVILAT  465 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------CSSSEEEEEC-CCCCEEESEEEECC
T ss_pred             eEECHHHHHHHHHHHHHhCC-CEEEeCCeEeEEEE--------------------eCCeEEEEeCCCcEEEECCEEEECC
Confidence            45678999999999999988 99999999999987                    3455888888887 799999 9999


Q ss_pred             CCCch
Q 010225          244 GGKSR  248 (514)
Q Consensus       244 G~~S~  248 (514)
                      |.+|.
T Consensus       466 G~~s~  470 (689)
T 3pvc_A          466 GHRLP  470 (689)
T ss_dssp             GGGTT
T ss_pred             Ccchh
Confidence            99986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.48  E-value=1.3e-12  Score=134.53  Aligned_cols=62  Identities=13%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCC---eeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCCcEEEeeE-E
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPS---RLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-V  240 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~---~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V  240 (514)
                      ..++...+...|.+.+++.| ++|++++   +|++++.                    +++.+. |.+.+|.++.||. |
T Consensus       156 g~~~~~~~~~~L~~~a~~~G-v~i~~~t~~~~V~~i~~--------------------~~~~v~gV~t~~G~~i~Ad~VV  214 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMG-VKFVTGTPQGRVVTLIF--------------------ENNDVKGAVTADGKIWRAERTF  214 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEEESTTTTCEEEEEE--------------------ETTEEEEEEETTTEEEECSEEE
T ss_pred             EEecHHHHHHHHHHHHHhcC-CEEEeCCcCceEEEEEe--------------------cCCeEEEEEECCCCEEECCEEE
Confidence            45677899999999999988 9999999   9999987                    345565 8999998899999 9


Q ss_pred             EecCCCch
Q 010225          241 GADGGKSR  248 (514)
Q Consensus       241 ~AdG~~S~  248 (514)
                      .|+|.+|.
T Consensus       215 ~AtG~~s~  222 (438)
T 3dje_A          215 LCAGASAG  222 (438)
T ss_dssp             ECCGGGGG
T ss_pred             ECCCCChh
Confidence            99999985

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.46  E-value=8e-12  Score=125.08  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC--cEEEeeE-EEe
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKL-VGA  242 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~-V~A  242 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                   +.++.+.|.+.+|  .++.||. |.|
T Consensus       145 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          145 GIVDSHALMLAYQGDAESDG-AQLVFHTPLIAGRV-------------------RPEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------CTTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             EEECHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE-------------------cCCceEEEEECCCceeEEEeCEEEEC
Confidence            45788999999999999988 99999999999987                   1223477888888  3799999 999


Q ss_pred             cCCCc-hhhhhh-CCC
Q 010225          243 DGGKS-RVRELA-GFK  256 (514)
Q Consensus       243 dG~~S-~vR~~l-~~~  256 (514)
                      +|.+| .+.+.+ |.+
T Consensus       205 ~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          205 AGLHAPGLARRIEGIP  220 (369)
T ss_dssp             CGGGHHHHHHTEETSC
T ss_pred             CCcchHHHHHHhcCCC
Confidence            99998 566666 654

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.42  E-value=1e-11  Score=128.81  Aligned_cols=73  Identities=18%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC------cEEEEEcCCCCCCCCCCCCCC-CCC--CC--ceEEeChhhHHHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH------LSVAIIDSNPALGKSNFIKKE-DPP--DP--RVSTVTPATISFFK  122 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g------~~V~viE~~~~~~~~~~~~~~-~~~--~~--~~~~l~~~~~~~l~  122 (514)
                      +.+||+|||||++||++|+.|++.    |      ++|+|||+++.++........ ...  .+  ......+...++++
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~----G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~   79 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKE----IKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVK   79 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHH----HTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHh----ccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHH
Confidence            358999999999999999999996    8      999999999877543221110 000  00  11222466778889


Q ss_pred             HcCCcHHH
Q 010225          123 EIGAWQYV  130 (514)
Q Consensus       123 ~lgl~~~~  130 (514)
                      ++|+.+.+
T Consensus        80 ~lgl~~~~   87 (470)
T 3i6d_A           80 DLGLEHLL   87 (470)
T ss_dssp             HTTCCTTE
T ss_pred             HcCCccee
Confidence            99886544

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.40  E-value=3.5e-11  Score=120.79  Aligned_cols=61  Identities=10%  Similarity=0.179  Sum_probs=51.8

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+.+.|.+.+++.| ++++++++|++++.                    +++.+.|++.+|+ +.||. |.|+|
T Consensus       144 g~~~~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~-~~a~~vV~a~G  201 (372)
T 2uzz_A          144 GFLRSELAIKTWIQLAKEAG-CAQLFNCPVTAIRH--------------------DDDGVTIETADGE-YQAKKAIVCAG  201 (372)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSSEEEEESSCE-EEEEEEEECCG
T ss_pred             cEEcHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEE--------------------cCCEEEEEECCCe-EEcCEEEEcCC
Confidence            45778899999999999887 99999999999987                    3345778887775 99999 99999


Q ss_pred             CCch
Q 010225          245 GKSR  248 (514)
Q Consensus       245 ~~S~  248 (514)
                      .+|.
T Consensus       202 ~~s~  205 (372)
T 2uzz_A          202 TWVK  205 (372)
T ss_dssp             GGGG
T ss_pred             ccHH
Confidence            9874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.39  E-value=3.7e-12  Score=134.90  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC---C--cEEEeeE-
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL-  239 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~-  239 (514)
                      ..++...+...|.+.+.+.| ++|+++++|+++..                   +.+..+.|.+.+   |  .++.||. 
T Consensus       165 g~vd~~~l~~~L~~~a~~~G-~~i~~~~~V~~l~~-------------------~~g~v~gV~~~d~~tg~~~~i~A~~V  224 (561)
T 3da1_A          165 YRTDDARLTLEIMKEAVARG-AVALNYMKVESFIY-------------------DQGKVVGVVAKDRLTDTTHTIYAKKV  224 (561)
T ss_dssp             EECCHHHHHHHHHHHHHHTT-CEEEESEEEEEEEE-------------------ETTEEEEEEEEETTTCCEEEEEEEEE
T ss_pred             ceEcHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE-------------------cCCeEEEEEEEEcCCCceEEEECCEE
Confidence            36788999999999999988 99999999999987                   122334455543   3  3699999 


Q ss_pred             EEecCCCc-hhhhhhCCC
Q 010225          240 VGADGGKS-RVRELAGFK  256 (514)
Q Consensus       240 V~AdG~~S-~vR~~l~~~  256 (514)
                      |+|+|.+| .+++.++..
T Consensus       225 V~AaG~~s~~l~~~~g~~  242 (561)
T 3da1_A          225 VNAAGPWVDTLREKDRSK  242 (561)
T ss_dssp             EECCGGGHHHHHHTTTCC
T ss_pred             EECCCcchHHHHHhcCCC
Confidence            99999999 677777654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.39  E-value=2.8e-12  Score=130.54  Aligned_cols=155  Identities=20%  Similarity=0.149  Sum_probs=93.0

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC-------CCCCCCCCCCce-EEeC-hhhHHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN-------FIKKEDPPDPRV-STVT-PATISFF  121 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~-------~~~~~~~~~~~~-~~l~-~~~~~~l  121 (514)
                      |++..+||+|||||++|+++|+.|++.    |++|+|||+.+.++...       |........... ..-. ......+
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~----G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l   98 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKR----GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSAL   98 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHH
Confidence            345679999999999999999999996    99999999998764211       100000000000 0000 1112333


Q ss_pred             HHcCCcHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeC
Q 010225          122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALL  201 (514)
Q Consensus       122 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~  201 (514)
                      ..+...+.+.-.....+   .+......             .......+..+.+.|.+.+++.| ++|+++++|++++. 
T Consensus        99 ~~~~~~~~~~~~~~~Gi---~~~~~~~g-------------~~~~~~~~~~l~~~L~~~l~~~G-v~i~~~~~V~~i~~-  160 (417)
T 3v76_A           99 ARYRPQDFVALVERHGI---GWHEKTLG-------------QLFCDHSAKDIIRMLMAEMKEAG-VQLRLETSIGEVER-  160 (417)
T ss_dssp             HHSCHHHHHHHHHHTTC---CEEECSTT-------------EEEESSCHHHHHHHHHHHHHHHT-CEEECSCCEEEEEE-
T ss_pred             HhcCHHHHHHHHHHcCC---CcEEeeCC-------------EEeeCCCHHHHHHHHHHHHHHCC-CEEEECCEEEEEEE-
Confidence            33332221111000000   01010000             00012357789999999999887 99999999999987 


Q ss_pred             CCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          202 PSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                                         .++.+.|.+.+| ++.||. |.|+|.+|
T Consensus       161 -------------------~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          161 -------------------TASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             -------------------ETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             -------------------eCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence                               445688888888 799999 99999999

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.37  E-value=4.5e-13  Score=138.24  Aligned_cols=171  Identities=23%  Similarity=0.277  Sum_probs=98.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      ..+++||+|||||++|+++|+.|++.    |.+|+||||.+.++.............  .... ....+++.++....+.
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~----G~~V~llEk~~~~g~~~~~sg~g~~~~--~~~~-~~~~~~~~~~~~~~~~   95 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEE----GANVLLLDKGNKLGRKLAISGGGRCNV--TNRL-PLDEIVKHIPGNGRFL   95 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHTGGGTCCC--EECS-CHHHHHHTCTBTGGGG
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHC----CCCEEEEECCCCCCceeEEeCCCceec--cCcc-cHHHHHHHhccChHHH
Confidence            34568999999999999999999996    999999999886532110000000000  0000 0012222222111110


Q ss_pred             hhhccCcc---eEEEEeCCCcceeeeccCCCCCcccEEEE----ehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCC
Q 010225          132 QHRHAYFD---KMQVWDYTGLGYTKYNARDVNKEILGCVV----ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSS  204 (514)
Q Consensus       132 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~  204 (514)
                      ......+.   .+.++...+.   .+..     ...+..+    ....+.+.|.+.+++.| ++|+++++|+++..    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~G~---~~~~-----~~~g~~~p~~~~~~~l~~~L~~~~~~~G-V~i~~~~~V~~i~~----  162 (447)
T 2i0z_A           96 YSAFSIFNNEDIITFFENLGV---KLKE-----EDHGRMFPVSNKAQSVVDALLTRLKDLG-VKIRTNTPVETIEY----  162 (447)
T ss_dssp             HHHHHHSCHHHHHHHHHHTTC---CEEE-----CGGGEEEETTCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE----
T ss_pred             HHHHHhcCHHHHHHHHHhcCC---ceEE-----eeCCEEECCCCCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEe----
Confidence            00000000   0000000000   0000     0011222    35788999999999887 99999999999986    


Q ss_pred             CCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc-----------hhhhhhCCCc
Q 010225          205 SSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS-----------RVRELAGFKT  257 (514)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S-----------~vR~~l~~~~  257 (514)
                                     +++..+.|.+.+|.++.||. |.|+|.+|           .+++.+|...
T Consensus       163 ---------------~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          163 ---------------ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             ---------------ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             ---------------cCCcEEEEEECCCCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence                           12233778888888899999 99999999           7888877654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.36  E-value=1.1e-12  Score=137.46  Aligned_cols=145  Identities=16%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC-----------CCC--------CC--CCCCCce-
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN-----------FIK--------KE--DPPDPRV-  110 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~-----------~~~--------~~--~~~~~~~-  110 (514)
                      ..++||+||||||+|+++|+.|++.    |++|+|||+++.++.+.           +..        ..  ....+.- 
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~----G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~  180 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQM----GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLY  180 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHT----TCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceE
Confidence            4568999999999999999999996    99999999986541000           000        00  0000000 


Q ss_pred             --E----EeChhhHHHHHHcCCcHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcC
Q 010225          111 --S----TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT  184 (514)
Q Consensus       111 --~----~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~  184 (514)
                        .    .......+.+...|....+...                           ..+..-......+.+.|.+.+++.
T Consensus       181 ~~i~~~~~~~~~v~~~~~~~G~~~~i~~~---------------------------~~p~~G~~~~~~l~~~L~~~l~~~  233 (549)
T 3nlc_A          181 SQVKDPNFYGRKVITEFVEAGAPEEILYV---------------------------SKPHIGTFKLVTMIEKMRATIIEL  233 (549)
T ss_dssp             CCSCCTTCHHHHHHHHHHHTTCCGGGGTB---------------------------SSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             EEeccccccHHHHHHHHHHcCCCceEeec---------------------------cccccccchHHHHHHHHHHHHHhc
Confidence              0    0001222223333321111000                           000001124577888999999988


Q ss_pred             CCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          185 EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       185 g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      | ++|+++++|++++.                   +.+..+.|.+.+|+++.||+ |.|+|.+|.
T Consensus       234 G-v~I~~~t~V~~I~~-------------------~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          234 G-GEIRFSTRVDDLHM-------------------EDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             T-CEEESSCCEEEEEE-------------------SSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             C-CEEEeCCEEEEEEE-------------------eCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            7 99999999999987                   12234568889999999999 999999995

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.34  E-value=5.2e-11  Score=118.22  Aligned_cols=36  Identities=33%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             ccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~~~   95 (514)
                      +||+|||||++|+++|+.|++   .    |++|+||||++..+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~----G~~V~v~Ek~~~~g   40 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG----PLYLAVWDKADDSG   40 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C----CEEEEEECSSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC----CceEEEEECCCCCc
Confidence            589999999999999999999   7    99999999987664

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.33  E-value=8.9e-12  Score=121.94  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=98.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+|+++|+.|++..  .|++|+|||+...++...|...   .......+.+....+|+++|+.      
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~--~G~~V~LiEk~~~~GGg~~~~g---~~~~~~~~~~~~~~~L~~~Gv~------  146 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLR--PDLRITIVEAGVAPGGGAWLGG---QLFSAMVMRKPADVFLDEVGVP------  146 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHC--TTSCEEEEESSSSCCTTTTCCB---TTCCCEEEETTTHHHHHHHTCC------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcC--CCCEEEEEeCCCccCCccccCC---ccchhhhcchHHHHHHHHcCCc------
Confidence            4689999999999999999999831  2899999999987754333111   1122334446667777777752      


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCC-CcccCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS-SISVDST  212 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~-~~~~~~~  212 (514)
                          +..      .+  .            +....+..++.+.|.+.+.+..+++++++++|+++..++... +.....+
T Consensus       147 ----~~~------~G--~------------~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~  202 (344)
T 3jsk_A          147 ----YED------EG--D------------YVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDD  202 (344)
T ss_dssp             ----CEE------CS--S------------EEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------
T ss_pred             ----ccc------cC--C------------eEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccc
Confidence                110      00  0            001123577889999999886559999999999998732100 0000000


Q ss_pred             CccccccccC--CeeEEEe------C--------CCcEEEeeE-EEecCCCchhhhhh
Q 010225          213 PSATTLFTKG--HLAKLDL------S--------DGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       213 ~~~~~~~~~~--~~~~v~~------~--------~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                      ...   ...+  ....|..      .        +..+++|++ |+|||..|++++.+
T Consensus       203 g~~---~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          203 GEA---EDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             ---------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             ccc---ccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            000   0001  1122222      1        234799999 99999999976655

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.32  E-value=2.8e-12  Score=130.55  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=53.2

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeE---------EEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEE
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLT---------SMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY  236 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~  236 (514)
                      ..++...+...|.+.+++.| ++++++++|+         +++.                    +++.+.|.+.+| ++.
T Consensus       167 g~v~~~~l~~~L~~~~~~~G-v~i~~~~~v~~~~g~~~~~~i~~--------------------~~~~v~v~~~~g-~i~  224 (405)
T 3c4n_A          167 LTYRPGSLALLAAQQAIGQG-AGLLLNTRAELVPGGVRLHRLTV--------------------TNTHQIVVHETR-QIR  224 (405)
T ss_dssp             EEECHHHHHHHHHHHHHTTT-CEEECSCEEEEETTEEEEECBCC---------------------------CBCCE-EEE
T ss_pred             EEEcHHHHHHHHHHHHHHCC-CEEEcCCEEEeccccccccceEe--------------------eCCeEEEEECCc-EEE
Confidence            45788999999999999887 9999999999         7765                    223456666666 799


Q ss_pred             eeE-EEecCCCc-hhhh-hhCCCc
Q 010225          237 AKL-VGADGGKS-RVRE-LAGFKT  257 (514)
Q Consensus       237 ad~-V~AdG~~S-~vR~-~l~~~~  257 (514)
                      ||. |.|+|.+| .+++ .++...
T Consensus       225 a~~VV~A~G~~s~~l~~~~~g~~~  248 (405)
T 3c4n_A          225 AGVIIVAAGAAGPALVEQGLGLHT  248 (405)
T ss_dssp             EEEEEECCGGGHHHHHHHHHCCCC
T ss_pred             CCEEEECCCccHHHHHHHhcCCCC
Confidence            999 99999999 6877 776543

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.32  E-value=3.2e-11  Score=116.53  Aligned_cols=144  Identities=20%  Similarity=0.274  Sum_probs=94.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+|||||++|+++|+.|++.   .|++|+|||+.+.++...+....   ......+.....+.|+++|+       
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~---~G~~V~viEk~~~~gg~~~~~~~---~~~~~~~~~~~~~~l~~~G~-------  104 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKN---PNVQVAIIEQSVSPGGGAWLGGQ---LFSAMIVRKPAHLFLDEIGV-------  104 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS---TTSCEEEEESSSSCCTTTTCCST---TCCCEEEETTTHHHHHHHTC-------
T ss_pred             cccCEEEECccHHHHHHHHHHHHc---CCCeEEEEECCCCCCCceecCCc---chHHHHcCcHHHHHHHHcCC-------
Confidence            468999999999999999999994   28999999999877533221111   11123334445556655553       


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         ++..      .+              .+....+...+...|.+.+.+..+++++++++|+++..             
T Consensus       105 ---~~~~------~~--------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-------------  148 (284)
T 1rp0_A          105 ---AYDE------QD--------------TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-------------  148 (284)
T ss_dssp             ---CCEE------CS--------------SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-------------
T ss_pred             ---Cccc------CC--------------CEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-------------
Confidence               1110      00              00012256788888998887643499999999999986             


Q ss_pred             ccccccccCCee-EEEeC---------CC-----cEEEeeE-EEecCCCchhhhhh
Q 010225          214 SATTLFTKGHLA-KLDLS---------DG-----TSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       214 ~~~~~~~~~~~~-~v~~~---------~g-----~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                             +++.+ .|.+.         +|     .++.||. |.|+|.+|.++...
T Consensus       149 -------~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          149 -------KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             -------ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             -------cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence                   22222 33321         22     4799999 99999999987654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.30  E-value=6.8e-11  Score=118.38  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=34.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      |.+++||+|||||++|+++|+.|++.    |++|+|||+....
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~----G~~V~vle~~~~~   41 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARK----GYSVHILARDLPE   41 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhC----CCEEEEEeccCCC
Confidence            34578999999999999999999996    9999999998743

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.29  E-value=2.1e-11  Score=125.84  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=56.3

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEE--EeeE-EEe
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL--YAKL-VGA  242 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~--~ad~-V~A  242 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.... ....+...+..   .+.+..+.|.+.+| ++  .||. |.|
T Consensus       176 ~~~~~~~l~~~L~~~~~~~G-v~i~~~~~V~~i~~~~~-~~~~~~~~~~~---~~~~~v~~V~t~~g-~i~~~Ad~VV~A  249 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAG-VEFIFGRRVVGVELKPR-VELGIEGEPLP---WQEARASAAVLSDG-TRVEVGEKLVVA  249 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTT-CEEEESCCEEEEEEEES-SCCCCTTSSCT---TSCEEEEEEEETTS-CEEEEEEEEEEC
T ss_pred             eEEcHHHHHHHHHHHHHhCC-CEEEcCCeEEEEEeccc-ccccccccccc---cCCCceEEEEeCCC-EEeecCCEEEEC
Confidence            45678899999999999988 99999999999975100 00000000000   00112346777777 58  9999 999


Q ss_pred             cCCCch-hhhhhCCC
Q 010225          243 DGGKSR-VRELAGFK  256 (514)
Q Consensus       243 dG~~S~-vR~~l~~~  256 (514)
                      +|.+|. +.+.++..
T Consensus       250 tG~~s~~l~~~~g~~  264 (448)
T 3axb_A          250 AGVWSNRLLNPLGID  264 (448)
T ss_dssp             CGGGHHHHHGGGTCC
T ss_pred             CCcCHHHHHHHcCCC
Confidence            999987 66666543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.28  E-value=7.9e-12  Score=126.75  Aligned_cols=150  Identities=17%  Similarity=0.202  Sum_probs=89.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCce-EEeChh-hHHHHHHc
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRV-STVTPA-TISFFKEI  124 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~-~~~~l~~l  124 (514)
                      +++||+|||||++|+++|+.|++.    |.+|+|||+++.++..       .|........... ..-.+. ....+..+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~----G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~   78 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKL----GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY   78 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhC----CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhC
Confidence            368999999999999999999996    9999999999866321       1100000000000 000000 11122222


Q ss_pred             CCcH---HHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEE---ehHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010225          125 GAWQ---YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVV---ENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (514)
Q Consensus       125 gl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v  198 (514)
                      ...+   .+...+. +     +.....                +..+   ....+.+.|.+.+++.| ++|+++++|+++
T Consensus        79 ~~~~~~~~~~~~Gi-~-----~~~~~~----------------g~~~p~~~~~~l~~~L~~~~~~~G-v~i~~~~~v~~i  135 (401)
T 2gqf_A           79 TNWDFISLVAEQGI-T-----YHEKEL----------------GQLFCDEGAEQIVEMLKSECDKYG-AKILLRSEVSQV  135 (401)
T ss_dssp             CHHHHHHHHHHTTC-C-----EEECST----------------TEEEETTCTHHHHHHHHHHHHHHT-CEEECSCCEEEE
T ss_pred             CHHHHHHHHHhCCC-c-----eEECcC----------------CEEccCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEE
Confidence            2111   1111111 0     000000                0111   56888899999998887 999999999999


Q ss_pred             eeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          199 ALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                      ..+         .+.       .++.+.|.+.+| +++||. |.|+|.+|
T Consensus       136 ~~~---------~~g-------~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          136 ERI---------QND-------EKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             EEC---------CSC-------SSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             Ecc---------cCc-------CCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            861         000       024577887777 799999 99999999

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.28  E-value=7.7e-11  Score=122.47  Aligned_cols=72  Identities=18%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCCCCCCCCCCC-CCC--C--CceEEeChhhHHHHHHcCCc
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFIKKE-DPP--D--PRVSTVTPATISFFKEIGAW  127 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~~~~~~~~~~-~~~--~--~~~~~l~~~~~~~l~~lgl~  127 (514)
                      .+||+|||||++||++|+.|++.    |  ++|+|+|+.+.++........ ...  .  .......+...++++++|+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~----g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~   79 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA----FPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLG   79 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH----CTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCG
T ss_pred             cccEEEECCCHHHHHHHHHHHHh----CCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCc
Confidence            57999999999999999999996    7  999999998876532211000 000  0  01122345677889999886


Q ss_pred             HHH
Q 010225          128 QYV  130 (514)
Q Consensus       128 ~~~  130 (514)
                      ..+
T Consensus        80 ~~~   82 (475)
T 3lov_A           80 EKL   82 (475)
T ss_dssp             GGE
T ss_pred             ceE
Confidence            544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.25  E-value=4.6e-11  Score=107.05  Aligned_cols=117  Identities=22%  Similarity=0.249  Sum_probs=88.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      +||+|||||++|+.+|..|++.    |.+|+|+|+.+..-.          .  ...+           .          
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~----g~~v~lie~~~~~~~----------~--~~~~-----------~----------   44 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA----GLKVLVLDGGRSKVK----------G--VSRV-----------P----------   44 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSCCTTT----------T--CSCC-----------C----------
T ss_pred             CeEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCccc----------C--chhh-----------h----------
Confidence            6999999999999999999996    999999999873310          0  0000           0          


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       .+        .+     ++     .     .+....+.+.+.+.+++.+ ++++++ +|++++.               
T Consensus        45 -~~--------~~-----~~-----~-----~~~~~~~~~~l~~~~~~~g-v~v~~~-~v~~i~~---------------   83 (180)
T 2ywl_A           45 -NY--------PG-----LL-----D-----EPSGEELLRRLEAHARRYG-AEVRPG-VVKGVRD---------------   83 (180)
T ss_dssp             -CS--------TT-----CT-----T-----CCCHHHHHHHHHHHHHHTT-CEEEEC-CCCEEEE---------------
T ss_pred             -cc--------CC-----Cc-----C-----CCCHHHHHHHHHHHHHHcC-CEEEeC-EEEEEEE---------------
Confidence             00        00     00     0     1346788899999999887 999999 9999986               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCC
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFK  256 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~  256 (514)
                           +++.+.+.+++| ++.||+ |.|+|.++.+++.++.+
T Consensus        84 -----~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~  119 (180)
T 2ywl_A           84 -----MGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLT  119 (180)
T ss_dssp             -----CSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCC
T ss_pred             -----cCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCC
Confidence                 334578888888 899999 99999999888877653

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.23  E-value=8.5e-12  Score=132.51  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=93.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcH----
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ----  128 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~----  128 (514)
                      ..++||+|||||++||++|+.|++.    |.+|+||||.+.++..+..      .+.+....  .....+.+|+.+    
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~----G~~V~vlEk~~~~gg~s~~------s~gg~~~~--~~~~~~~~g~~ds~~~  186 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKA----GANVILVDKAPFSGGNSMI------SAGGMNAV--GTKQQTAHGVEDKVEW  186 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSSCTTGGG------CCSCEECS--SCHHHHHTTCCCCHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCCCcccc------cCceeEcc--CCHHHHHhCCCCCHHH
Confidence            4568999999999999999999996    9999999999877432210      01111111  111112222111    


Q ss_pred             ------------------------------HHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEE-----EehHHH
Q 010225          129 ------------------------------YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV-----VENKVL  173 (514)
Q Consensus       129 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~r~~l  173 (514)
                                                    .+.+.+. ++..+...  .+           ...+..+.     +....+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv-~~~~~~~~--~g-----------~~~~r~~~~~~~~~~~~~l  252 (566)
T 1qo8_A          187 FIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGA-NLDDLKRS--GG-----------ARVDRTHRPHGGKSSGPEI  252 (566)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEECC--TT-----------CSSCCEEECSSSSCHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCC-cccccccc--CC-----------CCCCceeecCCCCCCHHHH
Confidence                                          1111111 11111000  00           00001111     346789


Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccccccc-CCe--eEEEeCCCc--EEEeeE-EEecCCCc
Q 010225          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK-GHL--AKLDLSDGT--SLYAKL-VGADGGKS  247 (514)
Q Consensus       174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~g~--~~~ad~-V~AdG~~S  247 (514)
                      .+.|.+.+++.+ ++|+++++|+++..                   ++ +..  +.+...+|+  ++.||. |.|+|.+|
T Consensus       253 ~~~L~~~~~~~g-v~i~~~~~v~~l~~-------------------~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          253 IDTLRKAAKEQG-IDTRLNSRVVKLVV-------------------NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHTT-CCEECSEEEEEEEE-------------------CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHhcC-CEEEeCCEEEEEEE-------------------CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            999999999887 99999999999987                   11 232  333334675  689999 99999999


Q ss_pred             hhhhhh
Q 010225          248 RVRELA  253 (514)
Q Consensus       248 ~vR~~l  253 (514)
                      ..++++
T Consensus       313 ~~~~~~  318 (566)
T 1qo8_A          313 MNKEMI  318 (566)
T ss_dssp             TCHHHH
T ss_pred             cCHHHH
Confidence            876654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.23  E-value=1.7e-10  Score=119.87  Aligned_cols=39  Identities=31%  Similarity=0.515  Sum_probs=34.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPALGKS   97 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~~~~   97 (514)
                      .+||+|||||++||++|+.|++.    |+  +|+|||+++.++..
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~~----G~~~~V~vlEa~~~~GG~   42 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSRA----PCPPKVVLVESSERLGGW   42 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHTS----SSCCEEEEECSSSSSBTT
T ss_pred             CceEEEECCcHHHHHHHHHHHhC----CCCCcEEEEeCCCCCCCc
Confidence            36999999999999999999996    88  99999998877543

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.22  E-value=7.1e-11  Score=120.84  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCCcEEEeeE-EEecCCCch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                    +++.+. |.+ +|.++.||. |.|.|.+..
T Consensus       196 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANG-GKIHTGQEVSKILI--------------------ENGKAAGIIA-DDRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcC-CEEEECCceeEEEE--------------------ECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence            557788888888888 89999999999987                    334454 666 477899999 999998766


Q ss_pred             hhhhh
Q 010225          249 VRELA  253 (514)
Q Consensus       249 vR~~l  253 (514)
                      .+ .+
T Consensus       254 ~~-ll  257 (425)
T 3ka7_A          254 AV-LC  257 (425)
T ss_dssp             HH-HT
T ss_pred             HH-hc
Confidence            53 44

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.22  E-value=7.6e-11  Score=110.30  Aligned_cols=130  Identities=20%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +++||+|||||++|+.+|+.|++.    |.+|+|||+........|  .   .  ....+..  ..+++++.        
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~----g~~v~lie~~~~~~G~~~--~---~--~~~~~~~--~~~~~~~~--------   60 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK----GVRVGLLTQSLDAVMMPF--L---P--PKPPFPP--GSLLERAY--------   60 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCS--S---C--CCSCCCT--TCHHHHHC--------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCcCCccc--C---c--cccccch--hhHHhhhc--------
Confidence            368999999999999999999996    999999999843211111  0   0  0000000  00111110        


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                 +            .  ..+     ++..+.+.|.+.+++.++++++ +++|++++.             
T Consensus        61 -----------d------------~--~g~-----~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~-------------   96 (232)
T 2cul_A           61 -----------D------------P--KDE-----RVWAFHARAKYLLEGLRPLHLF-QATATGLLL-------------   96 (232)
T ss_dssp             -----------C------------T--TCC-----CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-------------
T ss_pred             -----------c------------C--CCC-----CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE-------------
Confidence                       0            0  000     6888999999999987449988 569999976             


Q ss_pred             ccccccccCCe-eEEEeCCCcEEEeeE-EEecCCCchhhhhhCC
Q 010225          214 SATTLFTKGHL-AKLDLSDGTSLYAKL-VGADGGKSRVRELAGF  255 (514)
Q Consensus       214 ~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~  255 (514)
                             +++. +.|.+.+|.++.||+ |.|+|.+|..+..+|.
T Consensus        97 -------~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~  133 (232)
T 2cul_A           97 -------EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGG  133 (232)
T ss_dssp             -------ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETT
T ss_pred             -------eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCC
Confidence                   2233 467788888899999 9999999988876654

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.21  E-value=1.3e-10  Score=113.15  Aligned_cols=152  Identities=19%  Similarity=0.236  Sum_probs=97.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.+  .|++|+|+|+++.++...|....   ......+.+.....|+++|+.     
T Consensus        63 ~~~~dv~IiG~G~aGl~aA~~la~~~--~g~~V~v~e~~~~~ggg~~~~g~---~~~~~~~~~~~~~~L~~~Gv~-----  132 (326)
T 2gjc_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGGSWLGGQ---LFSAMVMRKPAHLFLQELEIP-----  132 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTTTTCCGG---GCCCEEEETTTHHHHHHTTCC-----
T ss_pred             cCcCCEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCccccccccccCc---ccchhhhhhHHHHHHHhhCcc-----
Confidence            34679999999999999999999841  28999999999877543332111   112234445566667666641     


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           +..      .+  .            ..+..+...+...|.+.+.+.++++++.+++|+++..++         +
T Consensus       133 -----~~~------~g--~------------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~---------~  178 (326)
T 2gjc_A          133 -----YED------EG--D------------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRP---------P  178 (326)
T ss_dssp             -----CEE------CS--S------------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECC---------C
T ss_pred             -----ccc------CC--C------------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecc---------c
Confidence                 110      00  0            001124567889999999887569999999999998721         0


Q ss_pred             CccccccccC--CeeEEEe--------------CCCcEEEe---------------eE-EEecCCCchhhhhhC
Q 010225          213 PSATTLFTKG--HLAKLDL--------------SDGTSLYA---------------KL-VGADGGKSRVRELAG  254 (514)
Q Consensus       213 ~~~~~~~~~~--~~~~v~~--------------~~g~~~~a---------------d~-V~AdG~~S~vR~~l~  254 (514)
                      .+      .+  ....|..              .++.++.|               |+ |+|+|..|++.+.+.
T Consensus       179 ~~------~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~  246 (326)
T 2gjc_A          179 TE------KGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCA  246 (326)
T ss_dssp             C-----------CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHH
T ss_pred             cc------CCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHHH
Confidence            00      01  1222222              13457999               99 999999999887763

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.20  E-value=1.3e-10  Score=122.70  Aligned_cols=158  Identities=14%  Similarity=0.187  Sum_probs=99.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeC-hhhHHHHHHcCC-cHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIGA-WQYV  130 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lgl-~~~~  130 (514)
                      ..+||+|||||++|+++|+.|++.    |.+|+|||++. ..+..+|.       +...++. ....+.++.+|- ...+
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~----G~kVlLIEk~~~~iG~~~Cn-------ps~ggia~~~lv~ei~algg~~~~~   95 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM----GQQTLLLTHNIDTLGQMSCN-------PAIGGIGKGHLVKEVDALGGLMAKA   95 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSS-------SEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC----CCCEEEEeeccccccccccc-------ccccchhhHHHHHHHHHhccHHHHH
Confidence            569999999999999999999996    99999999985 34333331       1111111 122233444432 2222


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .....   ..+...+.... .        ........+++..+...|.+.+++..+++| ++.+|+++..          
T Consensus        96 ~d~~g---i~f~~l~~~kg-p--------av~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~----------  152 (651)
T 3ces_A           96 IDQAG---IQFRILNASKG-P--------AVRATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIV----------  152 (651)
T ss_dssp             HHHHE---EEEEEESTTSC-G--------GGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEE----------
T ss_pred             hhhcc---cchhhhhcccC-c--------ccccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEe----------
Confidence            11110   01111111100 0        011123468899999999999988544998 5679999976          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhC
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAG  254 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~  254 (514)
                               +.+..+.|.+.+|.++.||. |.|+|.+|..+...|
T Consensus       153 ---------e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~G  188 (651)
T 3ces_A          153 ---------ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG  188 (651)
T ss_dssp             ---------SSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEECC
T ss_pred             ---------cCCEEEEEEECCCCEEECCEEEEcCCCCccCccccC
Confidence                     12234568888888899999 999999998776544

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.19  E-value=4.7e-10  Score=116.58  Aligned_cols=75  Identities=25%  Similarity=0.298  Sum_probs=48.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCC---CCCceEEe--ChhhHHHHHHcCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP---PDPRVSTV--TPATISFFKEIGA  126 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~---~~~~~~~l--~~~~~~~l~~lgl  126 (514)
                      ....+||+|||||++||++|+.|++.    |++|+|+|+.+.++..........   ..+.....  .+...++++++|+
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~----g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl   88 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSR----GTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNL   88 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTT----TCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTC
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCC
Confidence            44578999999999999999999996    999999999987753321100000   00000111  4667888999998


Q ss_pred             cHHH
Q 010225          127 WQYV  130 (514)
Q Consensus       127 ~~~~  130 (514)
                      .+.+
T Consensus        89 ~~~~   92 (478)
T 2ivd_A           89 EGRI   92 (478)
T ss_dssp             GGGE
T ss_pred             ccee
Confidence            5443

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.19  E-value=5.7e-11  Score=118.18  Aligned_cols=129  Identities=19%  Similarity=0.286  Sum_probs=87.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+|||||++|+++|+.|++.    |++|+|||+.+.++....                .         .++.+    
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~gg~~~----------------~---------~~~~~----   49 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS----GLSYVILDAEASPGGAWQ----------------H---------AWHSL----   49 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS----SCCEEEECCSSSSSGGGG----------------G---------SCTTC----
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCCCccc----------------C---------CCCCc----
Confidence            58999999999999999999996    999999999986631110                0         00000    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                             .+.....  ...+...... .......++..+..+|.+.+++.+ ++++++++|++++.              
T Consensus        50 -------~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~--------------  104 (357)
T 4a9w_A           50 -------HLFSPAG--WSSIPGWPMP-ASQGPYPARAEVLAYLAQYEQKYA-LPVLRPIRVQRVSH--------------  104 (357)
T ss_dssp             -------BCSSCGG--GSCCSSSCCC-CCSSSSCBHHHHHHHHHHHHHHTT-CCEECSCCEEEEEE--------------
T ss_pred             -------EecCchh--hhhCCCCCCC-CCccCCCCHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence                   0000000  0000000000 000112467899999999999887 99999999999987              


Q ss_pred             cccccccCCeeE-EEeCCCcEEEeeE-EEecCCCch
Q 010225          215 ATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       215 ~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                            .++.+. |.+.+| ++.+|. |.|+|.+|.
T Consensus       105 ------~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A          105 ------FGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             ------ETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             ------CCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence                  446677 888887 799999 999998774

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.19  E-value=4.4e-10  Score=117.56  Aligned_cols=64  Identities=16%  Similarity=0.281  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                   +++..+.|++.||+++.||. |.+.+.....
T Consensus       221 ~~l~~aL~~~~~~~G-g~I~~~~~V~~I~~-------------------~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~  280 (501)
T 4dgk_A          221 GALVQGMIKLFQDLG-GEVVLNARVSHMET-------------------TGNKIEAVHLEDGRRFLTQAVASNADVVHTY  280 (501)
T ss_dssp             HHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------ETTEEEEEEETTSCEEECSCEEECCC-----
T ss_pred             cchHHHHHHHHHHhC-CceeeecceeEEEe-------------------eCCeEEEEEecCCcEEEcCEEEECCCHHHHH
Confidence            567788889999998 89999999999987                   13344558999999999999 8888887777


Q ss_pred             hhhhC
Q 010225          250 RELAG  254 (514)
Q Consensus       250 R~~l~  254 (514)
                      +..++
T Consensus       281 ~~Ll~  285 (501)
T 4dgk_A          281 RDLLS  285 (501)
T ss_dssp             -----
T ss_pred             HHhcc
Confidence            66664

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.19  E-value=4e-11  Score=118.57  Aligned_cols=124  Identities=23%  Similarity=0.232  Sum_probs=89.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ++.+||+||||||+|+++|+.|++.    |++|+|||+++.++                             |.+...  
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g-----------------------------g~~~~~--   47 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMR----GLSFRFVDPLPEPG-----------------------------GQLTAL--   47 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSSC-----------------------------HHHHHT--
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCC-----------------------------Ceeecc--
Confidence            3568999999999999999999996    99999999987551                             000000  


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                        . +..  .+++...             .+   .+.+..+...|.+.+.+.+ ++++++++|+.++.            
T Consensus        48 --~-~~~--~~~~~~~-------------~~---~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~------------   93 (335)
T 2zbw_A           48 --Y-PEK--YIYDVAG-------------FP---KVYAKDLVKGLVEQVAPFN-PVYSLGERAETLER------------   93 (335)
T ss_dssp             --C-TTS--EECCSTT-------------CS---SEEHHHHHHHHHHHHGGGC-CEEEESCCEEEEEE------------
T ss_pred             --C-CCc--eeeccCC-------------CC---CCCHHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE------------
Confidence              0 000  0111000             00   1457788888999888877 89999999999976            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                              .++.+.|.+.+|.++.+|. |.|+|.+|...+..
T Consensus        94 --------~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~  127 (335)
T 2zbw_A           94 --------EGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRI  127 (335)
T ss_dssp             --------ETTEEEEEETTSCEEEEEEEEECCTTSEEEECCC
T ss_pred             --------CCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCC
Confidence                    3346788888888899999 99999987655444

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.18  E-value=5.8e-11  Score=118.72  Aligned_cols=125  Identities=20%  Similarity=0.224  Sum_probs=89.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+||||||+|+++|+.|++.    |++|+|||+.+.++                             |.+...  
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g-----------------------------g~~~~~--   56 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMN----NISCRIIESMPQLG-----------------------------GQLAAL--   56 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC-----------------------------HHHHHT--
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCC-----------------------------Cccccc--
Confidence            3468999999999999999999996    99999999987551                             000000  


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                        . +..  ..++...          .      ..+.+..+...|.+.+.+.+ ++++++++|+.++.            
T Consensus        57 --~-~~~--~~~~~~~----------~------~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~------------  102 (360)
T 3ab1_A           57 --Y-PEK--HIYDVAG----------F------PEVPAIDLVESLWAQAERYN-PDVVLNETVTKYTK------------  102 (360)
T ss_dssp             --C-TTS--EECCSTT----------C------SSEEHHHHHHHHHHHHHTTC-CEEECSCCEEEEEE------------
T ss_pred             --C-CCc--ccccCCC----------C------CCCCHHHHHHHHHHHHHHhC-CEEEcCCEEEEEEE------------
Confidence              0 000  0111000          0      01467888999999998877 89999999999986            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                             +.+..+.|.+.+|.++.+|. |.|+|..|..++.+
T Consensus       103 -------~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~  137 (360)
T 3ab1_A          103 -------LDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKL  137 (360)
T ss_dssp             -------CTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCC
T ss_pred             -------CCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCC
Confidence                   11236788888888899999 99999988665544

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.18  E-value=5.8e-10  Score=113.94  Aligned_cols=60  Identities=13%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                    +++.+ | ..+|.++.||. |.|.|.+...
T Consensus       189 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~  245 (421)
T 3nrn_A          189 KAVIDELERIIMENK-GKILTRKEVVEINI--------------------EEKKV-Y-TRDNEEYSFDVAISNVGVRETV  245 (421)
T ss_dssp             HHHHHHHHHHHHTTT-CEEESSCCEEEEET--------------------TTTEE-E-ETTCCEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CEEEcCCeEEEEEE--------------------ECCEE-E-EeCCcEEEeCEEEECCCHHHHH
Confidence            467778888888887 89999999999986                    34556 5 45778899999 9999988654


Q ss_pred             hhhhC
Q 010225          250 RELAG  254 (514)
Q Consensus       250 R~~l~  254 (514)
                       +.++
T Consensus       246 -~ll~  249 (421)
T 3nrn_A          246 -KLIG  249 (421)
T ss_dssp             -HHHC
T ss_pred             -HhcC
Confidence             4554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.18  E-value=3e-11  Score=128.46  Aligned_cols=64  Identities=13%  Similarity=0.004  Sum_probs=49.0

Q ss_pred             ehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccccccc-CCeeEEEe--CCCc--EEEeeE-EEe
Q 010225          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK-GHLAKLDL--SDGT--SLYAKL-VGA  242 (514)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~--~~g~--~~~ad~-V~A  242 (514)
                      ....+.+.|.+.+++.+ ++|+++++|+++..+                   + +..+.|..  .+|+  ++.||. |.|
T Consensus       253 ~g~~l~~~L~~~~~~~g-v~i~~~~~v~~l~~~-------------------~~g~v~Gv~~~~~~g~~~~i~a~~VVlA  312 (571)
T 1y0p_A          253 VGAHVVQVLYDNAVKRN-IDLRMNTRGIEVLKD-------------------DKGTVKGILVKGMYKGYYWVKADAVILA  312 (571)
T ss_dssp             HHHHHHHHHHHHHHHTT-CEEESSEEEEEEEEC-------------------TTSCEEEEEEEETTTEEEEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHHhcC-CEEEeCCEeeEeEEc-------------------CCCeEEEEEEEeCCCcEEEEECCeEEEe
Confidence            35789999999999887 999999999999861                   1 23333433  3675  689999 999


Q ss_pred             cCCCchhhhh
Q 010225          243 DGGKSRVREL  252 (514)
Q Consensus       243 dG~~S~vR~~  252 (514)
                      +|.+|..+++
T Consensus       313 tGg~~~n~~~  322 (571)
T 1y0p_A          313 TGGFAKNNER  322 (571)
T ss_dssp             CCCCTTCHHH
T ss_pred             CCCcccCHHH
Confidence            9999976543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.17  E-value=8e-11  Score=123.85  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=99.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeC-hhhHHHHHHcC-CcHHH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIG-AWQYV  130 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lg-l~~~~  130 (514)
                      ..+||+|||||++|+++|+.|++.    |.+|+|||++. ..+..+|.       +...++. ....+.++.+| .+..+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~----G~kVlLIEk~~~~iG~~~Cn-------ps~GGia~g~lv~eldalgg~~~~~   94 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM----GAKTAMFVLNADTIGQMSCN-------PAIGGIAKGIVVREIDALGGEMGKA   94 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCCSC-------SEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCCEEEEEecccccCCcCcc-------ccccccchHHHHHHHHHhhhHHHHH
Confidence            469999999999999999999997    99999999985 34333331       1111111 12233344443 33322


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .....   -.+...+.... .        ........+++..+...|.+.+++..+++| ++.+|+++..          
T Consensus        95 ~d~~g---i~f~~l~~~kG-p--------av~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~----------  151 (637)
T 2zxi_A           95 IDQTG---IQFKMLNTRKG-K--------AVQSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIV----------  151 (637)
T ss_dssp             HHHHE---EEEEEESTTSC-G--------GGCEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEE----------
T ss_pred             hhhcc---cceeecccccC-c--------cccchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEe----------
Confidence            22111   01111111100 0        011123467899999999999988545998 5679999976          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA  253 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l  253 (514)
                               +++....|.+.+|.++.||. |.|+|.++..+...
T Consensus       152 ---------e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~~  186 (637)
T 2zxi_A          152 ---------KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYI  186 (637)
T ss_dssp             ---------SSSBEEEEEETTSCEEECSEEEECCTTCBTCEEEE
T ss_pred             ---------cCCEEEEEEECCCcEEEeCEEEEccCCCccCceec
Confidence                     12234468888998999999 99999998776543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.16  E-value=2e-10  Score=121.19  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeChhhHHHHHH---cC-C
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKE---IG-A  126 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~---lg-l  126 (514)
                      ....+||+|||||++|+++|+.|++.    |.+|+|||+.. .++..+|.       +...++  ....+++.   ++ +
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr~----G~kVlLIEk~~~~iG~~~c~-------ps~gGi--a~~~lv~el~al~g~   84 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVARG----GLHCLLITSDLSAVARMSCN-------PAIGGV--AKGQITREIDALGGE   84 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSC-------SEEECH--HHHHHHHHHHHHTCS
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEecccccCCCccc-------cchhhh--hHHHHHHHHHhcccH
Confidence            34569999999999999999999996    99999999985 34333321       111111  12233333   22 2


Q ss_pred             cHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCC
Q 010225          127 WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (514)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~  206 (514)
                      .........   ..+...+....        . ........+++..+...|.+.+++.++++|+. .+|+++..      
T Consensus        85 ~~~~~d~~g---i~f~~l~~~kg--------p-av~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~------  145 (641)
T 3cp8_A           85 MGKAIDATG---IQFRMLNRSKG--------P-AMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA------  145 (641)
T ss_dssp             HHHHHHHHE---EEEEEECSSSC--------T-TTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE------
T ss_pred             HHHHHHhcC---CchhhcccccC--------c-cccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe------
Confidence            221111111   01111111100        0 01122356899999999999998865599865 58999876      


Q ss_pred             cccCCCCccccccccCCeeE-EEeCCCcEEEeeE-EEecCCCchhhh
Q 010225          207 ISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSRVRE  251 (514)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~vR~  251 (514)
                                    +++.+. |.+.+|.++.||. |.|+|.++..+-
T Consensus       146 --------------d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i  178 (641)
T 3cp8_A          146 --------------NSGKFSSVTVRSGRAIQAKAAILACGTFLNGLI  178 (641)
T ss_dssp             --------------ETTEEEEEEETTSCEEEEEEEEECCTTCBTCEE
T ss_pred             --------------cCCEEEEEEECCCcEEEeCEEEECcCCCCCccc
Confidence                          334444 8888898999999 999999987543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.12  E-value=5.7e-10  Score=111.07  Aligned_cols=51  Identities=16%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEec
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      +..++...+...|.+.+++.| ++|+. ++|++++.                    .+           .+.||. |.|+
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~--------------------~~-----------~~~a~~VV~A~  182 (351)
T 3g3e_A          136 SLILEGKNYLQWLTERLTERG-VKFFQ-RKVESFEE--------------------VA-----------REGADVIVNCT  182 (351)
T ss_dssp             EEEECHHHHHHHHHHHHHHTT-CEEEE-CCCCCHHH--------------------HH-----------HTTCSEEEECC
T ss_pred             ceEEcHHHHHHHHHHHHHHCC-CEEEE-EEeCCHHH--------------------hh-----------cCCCCEEEECC
Confidence            467899999999999999987 99988 88988854                    11           156999 9999


Q ss_pred             CCCch
Q 010225          244 GGKSR  248 (514)
Q Consensus       244 G~~S~  248 (514)
                      |.+|.
T Consensus       183 G~~s~  187 (351)
T 3g3e_A          183 GVWAG  187 (351)
T ss_dssp             GGGGG
T ss_pred             CcChH
Confidence            99985

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.12  E-value=2.4e-10  Score=117.78  Aligned_cols=165  Identities=10%  Similarity=0.026  Sum_probs=89.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH-
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-  129 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~-  129 (514)
                      .+.+||+||||||+|+++|+.|++.    |+  +|+|||+.+.++....+... .  .....+...... +..-.+... 
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~----G~~~~V~v~E~~~~~GG~~~~~~~-~--~~~~~ip~~~~~-~~~~~~~~g~   75 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRGSPGGVWNYTST-L--SNKLPVPSTNPI-LTTEPIVGPA   75 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSSSSSTTCSCCSC-C--CSCCCSSBCCTT-CCCCCBCCSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhc----CCCCCeEEEecCCCCCCeecCCCC-C--Cccccccccccc-cccccccccc
Confidence            4568999999999999999999996    88  99999998766422111100 0  000000000000 000000000 


Q ss_pred             -HHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          130 -VQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                       ........+..+.  .........+........ ....+++..+.++|.+.+++.+ ..++++++|++++.        
T Consensus        76 ~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~-~~i~~~t~V~~v~~--------  143 (447)
T 2gv8_A           76 ALPVYPSPLYRDLQ--TNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLL-PFIKLATDVLDIEK--------  143 (447)
T ss_dssp             SCCBCCCCCCTTCB--CSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGG-GGEECSEEEEEEEE--------
T ss_pred             ccCCccCchhhhhc--cCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhh-CeEEeCCEEEEEEe--------
Confidence             0000000000000  000000000000000000 1123578899999999998875 78999999999976        


Q ss_pred             cCCCCccccccccCCeeEEEeCC---Cc---EEEeeE-EEecCCCchh
Q 010225          209 VDSTPSATTLFTKGHLAKLDLSD---GT---SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~---g~---~~~ad~-V~AdG~~S~v  249 (514)
                                  .++.+.|++.+   |.   ++.+|. |.|+|.+|.-
T Consensus       144 ------------~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p  179 (447)
T 2gv8_A          144 ------------KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  179 (447)
T ss_dssp             ------------ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             ------------CCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCC
Confidence                        34557777655   66   799999 9999998753

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.11  E-value=5.5e-10  Score=114.45  Aligned_cols=36  Identities=36%  Similarity=0.646  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +||+|||||++|+++|+.|++.    |++|+|||+++.++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~----G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA----GKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT----TCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCcc
Confidence            7999999999999999999997    99999999987664

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.07  E-value=4.5e-10  Score=119.13  Aligned_cols=69  Identities=12%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeC---CCc--EEEeeE-E
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKL-V  240 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~g~--~~~ad~-V  240 (514)
                      .++...+...|.+.+.+.| ++|+++++|++++.                   +.+..+.|.+.   +|.  ++.||. |
T Consensus       184 ~v~~~~l~~~l~~~a~~~G-a~i~~~t~V~~l~~-------------------~~~~v~gV~~~d~~tg~~~~i~A~~VV  243 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDG-AYLVSKMKAVGFLY-------------------EGDQIVGVKARDLLTDEVIEIKAKLVI  243 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTT-CEEESSEEEEEEEE-------------------ETTEEEEEEEEETTTCCEEEEEBSCEE
T ss_pred             eEchHHHHHHHHHHHHHcC-CeEEeccEEEEEEE-------------------eCCEEEEEEEEEcCCCCEEEEEcCEEE
Confidence            3567888888999999888 99999999999987                   12233345542   343  699999 9


Q ss_pred             EecCCCch-hhhhhCC
Q 010225          241 GADGGKSR-VRELAGF  255 (514)
Q Consensus       241 ~AdG~~S~-vR~~l~~  255 (514)
                      .|+|.+|. +++..+.
T Consensus       244 ~AaG~ws~~l~~~~g~  259 (571)
T 2rgh_A          244 NTSGPWVDKVRNLNFT  259 (571)
T ss_dssp             ECCGGGHHHHHTTCCS
T ss_pred             ECCChhHHHHHHhhcc
Confidence            99999984 5555543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.06  E-value=6.4e-10  Score=117.01  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=90.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhc-cCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~-~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..+||+|||||++|+++|+.|+ +.    |++|+|||+++..+.. |...  ...+....+.....    .+...+.+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~----G~~v~viE~~~~~GGt-w~~~--~ypg~~~d~~s~~~----~~~~~~~~~~   75 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHEL----GLTTVGFDKADGPGGT-WYWN--RYPGALSDTESHLY----RFSFDRDLLQ   75 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT----CCCEEEEESSSSSCTH-HHHC--CCTTCEEEEEGGGS----SCCSCHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC----CCCEEEEECCCCCCCc-cccc--CCCCceecCCccee----eecccccccc
Confidence            4689999999999999999999 75    9999999998866311 1000  00000000000000    0000000000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCc--eEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                                               .  ........++..+..+|.+.+++.+ +  +++++++|++++..         
T Consensus        76 -------------------------~--~~~~~~~~~~~ei~~~l~~~~~~~g-~~~~i~~~~~V~~i~~~---------  118 (540)
T 3gwf_A           76 -------------------------E--STWKTTYITQPEILEYLEDVVDRFD-LRRHFKFGTEVTSALYL---------  118 (540)
T ss_dssp             -------------------------H--CCCSBSEEEHHHHHHHHHHHHHHTT-CGGGEEESCCEEEEEEE---------
T ss_pred             -------------------------C--CCCcccCCCHHHHHHHHHHHHHHcC-CcceeEeccEEEEEEEe---------
Confidence                                     0  0001124678999999999999887 6  89999999999871         


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                               +++..+.|.+.+|+++.||. |.|+|..|.-
T Consensus       119 ---------~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p  149 (540)
T 3gwf_A          119 ---------DDENLWEVTTDHGEVYRAKYVVNAVGLLSAI  149 (540)
T ss_dssp             ---------TTTTEEEEEETTSCEEEEEEEEECCCSCCSB
T ss_pred             ---------CCCCEEEEEEcCCCEEEeCEEEECCcccccC
Confidence                     12357899999999999999 9999987754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.06  E-value=6.3e-10  Score=108.64  Aligned_cols=114  Identities=18%  Similarity=0.218  Sum_probs=82.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +||+||||||+|+++|+.|++.    |+ +|+|||++. ++. .|             .  ..       .         
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~----g~~~v~lie~~~-~gg-~~-------------~--~~-------~---------   44 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG----GVKNAVLFEKGM-PGG-QI-------------T--GS-------S---------   44 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCSSEEEECSSS-TTC-GG-------------G--GC-------S---------
T ss_pred             ceEEEECccHHHHHHHHHHHHC----CCCcEEEEcCCC-CCc-cc-------------c--cc-------c---------
Confidence            7999999999999999999996    99 999999963 210 00             0  00       0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ...             .++  ..     ...+++..+...|.+.+.+.+ +++++ .+|++++.              
T Consensus        45 --~~~-------------~~~--~~-----~~~~~~~~~~~~l~~~~~~~~-v~~~~-~~v~~i~~--------------   86 (311)
T 2q0l_A           45 --EIE-------------NYP--GV-----KEVVSGLDFMQPWQEQCFRFG-LKHEM-TAVQRVSK--------------   86 (311)
T ss_dssp             --CBC-------------CST--TC-----CSCBCHHHHHHHHHHHHHTTS-CEEEC-SCEEEEEE--------------
T ss_pred             --ccc-------------cCC--CC-----cccCCHHHHHHHHHHHHHHcC-CEEEE-EEEEEEEE--------------
Confidence              000             000  00     012567889999999898887 89988 68999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                            .++.+.|.+.+|.++.+|. |.|+|.++.+.
T Consensus        87 ------~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           87 ------KDSHFVILAEDGKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             ------ETTEEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             ------cCCEEEEEEcCCCEEECCEEEECCCCCCCCC
Confidence                  3456778788888999999 99999877553

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.05  E-value=1.6e-09  Score=106.15  Aligned_cols=112  Identities=19%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +.+||+|||||++|+++|+.|++.    |++|+|||++  ++.. |              ..                  
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~--~gg~-~--------------~~------------------   54 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARY----MLKTLVIGET--PGGQ-L--------------TE------------------   54 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESS--TTGG-G--------------GG------------------
T ss_pred             CccCEEEECccHHHHHHHHHHHHC----CCcEEEEecc--CCCe-e--------------cc------------------
Confidence            468999999999999999999996    9999999998  3100 0              00                  


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       . .    ..+.        +     ....   .+....+...|.+.+++.+ +++++ .+|++++.             
T Consensus        55 -~-~----~~~~--------~-----~~~~---~~~~~~~~~~~~~~~~~~~-v~~~~-~~v~~i~~-------------   97 (323)
T 3f8d_A           55 -A-G----IVDD--------Y-----LGLI---EIQASDMIKVFNKHIEKYE-VPVLL-DIVEKIEN-------------   97 (323)
T ss_dssp             -C-C----EECC--------S-----TTST---TEEHHHHHHHHHHHHHTTT-CCEEE-SCEEEEEE-------------
T ss_pred             -c-c----cccc--------c-----CCCC---CCCHHHHHHHHHHHHHHcC-CEEEE-EEEEEEEe-------------
Confidence             0 0    0000        0     0000   1467889999999998887 89999 89999987             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                             .++.+.+...+|.++.+|. |.|+|....
T Consensus        98 -------~~~~~~v~~~~g~~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           98 -------RGDEFVVKTKRKGEFKADSVILGIGVKRR  126 (323)
T ss_dssp             -------C--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred             -------cCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence                   4456788888888999999 999998743

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.04  E-value=6.6e-10  Score=107.50  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+||||||+|+++|+.|++.    |++|+|||+.+.....                .                 .  
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~~~~----------------~-----------------~--   42 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAGERRNRF----------------A-----------------S--   42 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCCGGGG----------------C-----------------S--
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCccccc----------------c-----------------h--
Confidence            48999999999999999999996    8999999987632100                0                 0  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ..        .     .+..    .    ...+...+...+.+.+.+.++++++.+ +|++++.              
T Consensus        43 --~~--------~-----~~~~----~----~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~--------------   84 (297)
T 3fbs_A           43 --HS--------H-----GFLG----Q----DGKAPGEIIAEARRQIERYPTIHWVEG-RVTDAKG--------------   84 (297)
T ss_dssp             --CC--------C-----SSTT----C----TTCCHHHHHHHHHHHHTTCTTEEEEES-CEEEEEE--------------
T ss_pred             --hh--------c-----CCcC----C----CCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEEEEE--------------
Confidence              00        0     0000    0    013467888999999988755777655 8999986              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+.+|.++.+|. |.|+|..+..
T Consensus        85 ------~~~~~~v~~~~g~~~~~d~vviAtG~~~~~  114 (297)
T 3fbs_A           85 ------SFGEFIVEIDGGRRETAGRLILAMGVTDEL  114 (297)
T ss_dssp             ------ETTEEEEEETTSCEEEEEEEEECCCCEEEC
T ss_pred             ------cCCeEEEEECCCCEEEcCEEEECCCCCCCC
Confidence                  4456889999998999999 9999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.03  E-value=4.8e-10  Score=110.61  Aligned_cols=123  Identities=13%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      ...+.+||+|||||++|+++|+.|++.    |++|+|||+.+...          ....+               .+.  
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~vie~~~~~~----------~~~gg---------------~~~--   66 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLARA----EIKPILYEGMMANG----------IAAGG---------------QLT--   66 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTT----------BCTTC---------------GGG--
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCCC----------CCcCc---------------ccc--
Confidence            345678999999999999999999996    99999999976210          00000               000  


Q ss_pred             HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                       .     ..  .+..        +     ...+  ..+.+..+...|.+.+.+.+ +++++++ |++++.          
T Consensus        67 -~-----~~--~~~~--------~-----~~~~--~~~~~~~~~~~~~~~~~~~g-v~i~~~~-v~~i~~----------  111 (338)
T 3itj_A           67 -T-----TT--EIEN--------F-----PGFP--DGLTGSELMDRMREQSTKFG-TEIITET-VSKVDL----------  111 (338)
T ss_dssp             -G-----SS--EECC--------S-----TTCT--TCEEHHHHHHHHHHHHHHTT-CEEECSC-EEEEEC----------
T ss_pred             -c-----ch--hhcc--------c-----CCCc--ccCCHHHHHHHHHHHHHHcC-CEEEEeE-EEEEEE----------
Confidence             0     00  0000        0     0000  12567889999999999887 9999997 999976          


Q ss_pred             CCCccccccccCCeeEEEe---CCCcEEEeeE-EEecCCCchh
Q 010225          211 STPSATTLFTKGHLAKLDL---SDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~---~~g~~~~ad~-V~AdG~~S~v  249 (514)
                                ..+.+.+..   .++.++.+|. |.|+|..+..
T Consensus       112 ----------~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          112 ----------SSKPFKLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             ----------SSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             ----------cCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence                      445677776   3667899999 9999986543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.02  E-value=1.8e-09  Score=113.10  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      +.++||||||||++||++|+.|++.    |.+|+||||.+..+.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~----G~~V~vlEk~~~~GG   78 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARA----GADVLVLERTSGWGG   78 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCCC
Confidence            4579999999999999999999996    999999999987753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.02  E-value=1.2e-09  Score=115.23  Aligned_cols=142  Identities=16%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+|||||++|+++|+.|++.    |++|+|||+++.++.. |.... .+   +..+....  .+-.+....++..
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~----G~~v~iiE~~~~~GG~-w~~~~-~p---g~~~d~~~--~~~~~~f~~~~~~   82 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLREL----GRSVHVIETAGDVGGV-WYWNR-YP---GARCDIES--IEYCYSFSEEVLQ   82 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTH-HHHCC-CT---TCBCSSCT--TTSSCCSCHHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEeCCCCCCCc-ccccC-CC---ceeecccc--cccccccChhhhh
Confidence            3468999999999999999999996    9999999999876311 10000 00   00000000  0000000000000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                                        ...+         .....++..+.++|.+.+++.+ +++++++++|++++..          
T Consensus        83 ------------------~~~~---------~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~----------  125 (542)
T 1w4x_A           83 ------------------EWNW---------TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFD----------  125 (542)
T ss_dssp             ------------------HCCC---------CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEE----------
T ss_pred             ------------------ccCc---------ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEc----------
Confidence                              0000         0012467888888888877764 3679999999999871          


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                              ++...+.|++.+|++++||+ |.|+|.+|.-+
T Consensus       126 --------~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~  157 (542)
T 1w4x_A          126 --------EATNTWTVDTNHGDRIRARYLIMASGQLSVPQ  157 (542)
T ss_dssp             --------TTTTEEEEEETTCCEEEEEEEEECCCSCCCCC
T ss_pred             --------CCCCeEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence                    12356889999998999999 99999987543

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.02  E-value=1.2e-09  Score=106.41  Aligned_cols=114  Identities=18%  Similarity=0.160  Sum_probs=75.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      .++.|||+||||||+|+++|+.|+|.    |++|+|||++...               + .+.                 
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~----g~~v~lie~~~~g---------------g-~~~-----------------   45 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRA----RKQIALFDNNTNR---------------N-RVT-----------------   45 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSCCG---------------G-GGS-----------------
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCC---------------C-eee-----------------
Confidence            45679999999999999999999996    9999999987522               1 000                 


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .    .+..             +..    ..    .+....+.....+.+.+.+.+.++.+ .++.+..           
T Consensus        46 ~----~~~~-------------~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------   88 (304)
T 4fk1_A           46 Q----NSHG-------------FIT----RD----GIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMITK-----------   88 (304)
T ss_dssp             S----CBCC-------------STT----CT----TBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEEEE-----------
T ss_pred             e----ecCC-------------ccC----CC----CCCHHHHHHHHHHHHHhcCCEEEEee-EEEEeee-----------
Confidence            0    0000             000    00    02345666777777777765655554 5666654           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                              ...+..++...+|+++.+|. |.|+|...
T Consensus        89 --------~~~~~~~v~~~~g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           89 --------QSTGLFEIVTKDHTKYLAERVLLATGMQE  117 (304)
T ss_dssp             --------CTTSCEEEEETTCCEEEEEEEEECCCCEE
T ss_pred             --------cCCCcEEEEECCCCEEEeCEEEEccCCcc
Confidence                    13355778888999999999 99999753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.01  E-value=3.5e-10  Score=111.64  Aligned_cols=119  Identities=14%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..+||+||||||+|+++|+.|++.    |++|+|||+.....          ....+. +.                 . 
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~~~----------~~~gg~-~~-----------------~-   53 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARA----ELKPLLFEGWMAND----------IAPGGQ-LT-----------------T-   53 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTT----------BCTTCG-GG-----------------G-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeccCccc----------cCCCce-ee-----------------e-
Confidence            458999999999999999999996    99999999821110          000000 00                 0 


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                          ...+  ...             ...+  ..+.+..+...|.+.+.+.+ +++++++ |++++.             
T Consensus        54 ----~~~~--~~~-------------~~~~--~~~~~~~~~~~l~~~~~~~g-v~~~~~~-v~~i~~-------------   97 (333)
T 1vdc_A           54 ----TTDV--ENF-------------PGFP--EGILGVELTDKFRKQSERFG-TTIFTET-VTKVDF-------------   97 (333)
T ss_dssp             ----CSEE--CCS-------------TTCT--TCEEHHHHHHHHHHHHHHTT-CEEECCC-CCEEEC-------------
T ss_pred             ----cccc--ccC-------------CCCc--cCCCHHHHHHHHHHHHHHCC-CEEEEeE-EEEEEE-------------
Confidence                0000  000             0000  12467888999999888887 9999986 888875             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             .++.+.|.+ +|.++.+|. |.|+|.++..
T Consensus        98 -------~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           98 -------SSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             -------SSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             -------cCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence                   335577777 778899999 9999998654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.01  E-value=8.6e-10  Score=122.41  Aligned_cols=69  Identities=13%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEec
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    .++. +.|.+.+| ++.||. |.|+
T Consensus       146 g~v~p~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~--------------------~~~~v~~V~t~~G-~i~Ad~VV~Aa  203 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAG-VTYRGSTTVTGIEQ--------------------SGGRVTGVQTADG-VIPADIVVSCA  203 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEETTE-EEECSEEEECC
T ss_pred             ceEcHHHHHHHHHHHHHHcC-CEEECCceEEEEEE--------------------eCCEEEEEEECCc-EEECCEEEECC
Confidence            45688999999999999988 99999999999986                    2333 45777777 699999 9999


Q ss_pred             CCCchh-hhhhCCC
Q 010225          244 GGKSRV-RELAGFK  256 (514)
Q Consensus       244 G~~S~v-R~~l~~~  256 (514)
                      |.+|.. .+.++..
T Consensus       204 G~~s~~l~~~~g~~  217 (830)
T 1pj5_A          204 GFWGAKIGAMIGMA  217 (830)
T ss_dssp             GGGHHHHHHTTTCC
T ss_pred             ccchHHHHHHhCCC
Confidence            999864 3444543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.00  E-value=9.4e-10  Score=108.19  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.. ++. .|              ...        +       
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~gg-~~--------------~~~--------~-------   50 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRA----QLSTLILEKGM-PGG-QI--------------AWS--------E-------   50 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC-TTG-GG--------------GGC--------S-------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHc----CCcEEEEeCCC-CCc-cc--------------ccc--------c-------
Confidence            3468999999999999999999996    99999999983 310 00              000        0       


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                          .+.             .+.  ..   +  ..+++..+...|.+.+++.+ +++++ .+|++++.            
T Consensus        51 ----~~~-------------~~~--~~---~--~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~i~~------------   92 (325)
T 2q7v_A           51 ----EVE-------------NFP--GF---P--EPIAGMELAQRMHQQAEKFG-AKVEM-DEVQGVQH------------   92 (325)
T ss_dssp             ----CBC-------------CST--TC---S--SCBCHHHHHHHHHHHHHHTT-CEEEE-CCEEEEEE------------
T ss_pred             ----ccc-------------cCC--CC---C--CCCCHHHHHHHHHHHHHHcC-CEEEe-eeEEEEEe------------
Confidence                000             000  00   0  01456788888999888887 89888 58999976            


Q ss_pred             Ccccccccc--CCe-eEEEeCCCcEEEeeE-EEecCCCch
Q 010225          213 PSATTLFTK--GHL-AKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       213 ~~~~~~~~~--~~~-~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                              .  ++. +.|...+|.++.+|. |.|+|.++.
T Consensus        93 --------~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~  124 (325)
T 2q7v_A           93 --------DATSHPYPFTVRGYNGEYRAKAVILATGADPR  124 (325)
T ss_dssp             --------CTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             --------ccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence                    1  222 667677888999999 999998654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.99  E-value=1.1e-09  Score=115.38  Aligned_cols=139  Identities=19%  Similarity=0.213  Sum_probs=88.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+|||||++|+++|+.|++.    |++|+|||+++..+.......   ..+....+....   + .....+++..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~----G~~v~iiE~~~~~GGtw~~~~---ypg~~~dv~s~~---y-~~~f~~~~~~   87 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ----GLTVRAFEAASGVGGVWYWNR---YPGARCDVESID---Y-SYSFSPELEQ   87 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTHHHHCC---CTTCBCSSCTTT---S-SCCSCHHHHH
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC----CCCEEEEeCCCCCCCccccCC---CCCceeCCCchh---c-cccccccccc
Confidence            4568999999999999999999996    999999999886631100000   000000000000   0 0000000000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCc--eEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      .                  ..         ......++..+..+|.+.+++.+ +  +++++++|++++..         
T Consensus        88 ~------------------~~---------~~~~~~~~~ei~~yl~~~~~~~g-~~~~i~~~~~V~~i~~~---------  130 (549)
T 4ap3_A           88 E------------------WN---------WSEKYATQPEILAYLEHVADRFD-LRRDIRFDTRVTSAVLD---------  130 (549)
T ss_dssp             H------------------CC---------CSSSSCBHHHHHHHHHHHHHHTT-CGGGEECSCCEEEEEEE---------
T ss_pred             C------------------CC---------CccCCCCHHHHHHHHHHHHHHcC-CCccEEECCEEEEEEEc---------
Confidence            0                  00         00012467889999999998887 5  89999999999871         


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                               ++...+.|++.+|+++.||+ |.|+|..|.
T Consensus       131 ---------~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A          131 ---------EEGLRWTVRTDRGDEVSARFLVVAAGPLSN  160 (549)
T ss_dssp             ---------TTTTEEEEEETTCCEEEEEEEEECCCSEEE
T ss_pred             ---------CCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence                     13357899999999999999 999997654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.99  E-value=1.3e-09  Score=106.82  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=79.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      +...+||+||||||+|+++|+.|++.    |++|+|||+.. ++. .+            ...          .      
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~gg-~~------------~~~----------~------   58 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARS----GFSVAILDKAV-AGG-LT------------AEA----------P------   58 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS-TTG-GG------------GGC----------S------
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCC-CCc-cc------------ccc----------c------
Confidence            34568999999999999999999996    99999999953 210 00            000          0      


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                           .+.             .++  ..      ..+.+..+...+.+.+++.+ +++++ .+|++++.           
T Consensus        59 -----~~~-------------~~~--~~------~~~~~~~~~~~~~~~~~~~~-v~~~~-~~v~~i~~-----------   99 (319)
T 3cty_A           59 -----LVE-------------NYL--GF------KSIVGSELAKLFADHAANYA-KIREG-VEVRSIKK-----------   99 (319)
T ss_dssp             -----CBC-------------CBT--TB------SSBCHHHHHHHHHHHHHTTS-EEEET-CCEEEEEE-----------
T ss_pred             -----hhh-------------hcC--CC------cccCHHHHHHHHHHHHHHcC-CEEEE-eeEEEEEE-----------
Confidence                 000             000  00      01345678888888888887 99988 68999976           


Q ss_pred             CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                               .++.+.|.. ++.++.+|. |.|+|.++..
T Consensus       100 ---------~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A          100 ---------TQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             ---------ETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             ---------eCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence                     335566766 566799999 9999986543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.98  E-value=2.5e-09  Score=113.44  Aligned_cols=65  Identities=15%  Similarity=0.095  Sum_probs=49.2

Q ss_pred             ehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccccccc-CCeeEEEe--CCCc--EEEeeE-EEe
Q 010225          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK-GHLAKLDL--SDGT--SLYAKL-VGA  242 (514)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~--~~g~--~~~ad~-V~A  242 (514)
                      ....+...|.+.+++.| ++|+++++|+++..                   ++ +..+.|..  .+|+  ++.||. |.|
T Consensus       253 ~g~~l~~~L~~~~~~~g-v~i~~~t~v~~l~~-------------------~~~g~v~GV~~~~~~G~~~~i~A~~VVlA  312 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRG-TDIRLNSRVVRILE-------------------DASGKVTGVLVKGEYTGYYVIKADAVVIA  312 (572)
T ss_dssp             HHHHHHHHHHHHHHHTT-CEEESSEEEEEEEE-------------------C--CCEEEEEEEETTTEEEEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHHHcC-CeEEecCEEEEEEE-------------------CCCCeEEEEEEEeCCCcEEEEEcCEEEEe
Confidence            35688999999999887 99999999999976                   11 23333443  3665  689999 999


Q ss_pred             cCCCchhhhhh
Q 010225          243 DGGKSRVRELA  253 (514)
Q Consensus       243 dG~~S~vR~~l  253 (514)
                      +|.+|..++++
T Consensus       313 tGg~~~~~~~~  323 (572)
T 1d4d_A          313 AGGFAKNNERV  323 (572)
T ss_dssp             CCCCTTCHHHH
T ss_pred             CCCCccCHHHH
Confidence            99999765443

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.98  E-value=1.6e-07  Score=98.59  Aligned_cols=40  Identities=38%  Similarity=0.619  Sum_probs=36.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..+||+|||||++||++|+.|++.    |++|+|+|+++.++..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GGr   42 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS----GLNVVVLEARDRVGGR   42 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT----TCCEEEECSSSSSBTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCCCc
Confidence            457999999999999999999996    9999999999887544

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.96  E-value=1.8e-09  Score=108.01  Aligned_cols=139  Identities=17%  Similarity=0.226  Sum_probs=83.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .+||+|||||++|+++|+.|++.    |+ +|+|||+++ ++.. |...  ...  ...+.+..  ....+|+.      
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~----g~~~v~lie~~~-~Gg~-~~~~--~~~--~~~~~~~~--~~~~~g~~------   65 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDF----GITDVIILEKGT-VGHS-FKHW--PKS--TRTITPSF--TSNGFGMP------   65 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCCEEEECSSS-TTHH-HHTS--CTT--CBCSSCCC--CCGGGTCC------
T ss_pred             cCcEEEECcCHHHHHHHHHHHHc----CCCcEEEEecCC-CCCc-cccC--ccc--ccccCcch--hcccCCch------
Confidence            58999999999999999999996    88 999999987 4210 0000  000  00000000  00000000      


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         .+.     .........+.       .....+.+..+..+|.+.+++.+ ++++++++|++++.             
T Consensus        66 ---~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g-v~i~~~~~v~~i~~-------------  116 (369)
T 3d1c_A           66 ---DMN-----AISMDTSPAFT-------FNEEHISGETYAEYLQVVANHYE-LNIFENTVVTNISA-------------  116 (369)
T ss_dssp             ---CTT-----CSSTTCCHHHH-------HCCSSCBHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------
T ss_pred             ---hhh-----hcccccccccc-------ccccCCCHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE-------------
Confidence               000     00000000000       00012456778888888888887 99999999999986             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                             .++.+.|...++ ++.+|. |.|+|.++.
T Consensus       117 -------~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A          117 -------DDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             -------CSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             -------CCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence                   334577877777 599999 999999764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.96  E-value=4.7e-09  Score=103.18  Aligned_cols=117  Identities=26%  Similarity=0.318  Sum_probs=85.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .+||+|||||++|+++|+.|++.    |++|+|||+.+.++                             |.+...    
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g-----------------------------G~~~~~----   49 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR----QASVKIIESLPQLG-----------------------------GQLSAL----   49 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC-----------------------------HHHHHH----
T ss_pred             cceEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCCC-----------------------------ceehhc----
Confidence            57999999999999999999996    99999999998651                             000000    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      . +..  .+++..+             ..   .+....+...|.+.+.+.+ ++++++++|++++.              
T Consensus        50 ~-~~~--~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~--------------   95 (332)
T 3lzw_A           50 Y-PEK--YIYDVAG-------------FP---KIRAQELINNLKEQMAKFD-QTICLEQAVESVEK--------------   95 (332)
T ss_dssp             C-TTS--EECCSTT-------------CS---SEEHHHHHHHHHHHHTTSC-CEEECSCCEEEEEE--------------
T ss_pred             C-CCc--eEeccCC-------------CC---CCCHHHHHHHHHHHHHHhC-CcEEccCEEEEEEE--------------
Confidence            0 000  0111000             00   1467889999999999887 99999999999987              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                           +.++.+.|.+.+|+ +.+|. |.|+|..+.
T Consensus        96 -----~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~  124 (332)
T 3lzw_A           96 -----QADGVFKLVTNEET-HYSKTVIITAGNGAF  124 (332)
T ss_dssp             -----CTTSCEEEEESSEE-EEEEEEEECCTTSCC
T ss_pred             -----CCCCcEEEEECCCE-EEeCEEEECCCCCcC
Confidence                 12236788888886 99999 999999653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.96  E-value=1.5e-09  Score=114.36  Aligned_cols=140  Identities=13%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||+|||||++|+++|+.|++.    |++|+|||+++.++.. |...  ...+  ......           .....
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~----g~~v~iiE~~~~~GGt-w~~~--~yPg--~~~d~~-----------~~~y~   66 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQA----GMKVLGIEAGEDVGGT-WYWN--RYPG--CRLDTE-----------SYAYG   66 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTH-HHHC--CCTT--CBCSSC-----------HHHHC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEeCCCCCCCc-cccC--CCCc--eeecCc-----------hhhcc
Confidence            3568999999999999999999996    9999999999866311 1000  0000  000000           00000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCc--eEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ...         ........         .......++..+..++.+.+++.+ +  .++++++|++++..         
T Consensus        67 ~~f---------~~~~~~~~---------~~~~~~~~~~ei~~yl~~~~~~~~-l~~~i~~~~~V~~~~~~---------  118 (545)
T 3uox_A           67 YFA---------LKGIIPEW---------EWSENFASQPEMLRYVNRAADAMD-VRKHYRFNTRVTAARYV---------  118 (545)
T ss_dssp             HHH---------HTTSSTTC---------CCSBSSCBHHHHHHHHHHHHHHHT-CGGGEECSCCEEEEEEE---------
T ss_pred             ccc---------CcccccCC---------CccccCCCHHHHHHHHHHHHHHcC-CcCcEEECCEEEEEEEe---------
Confidence            000         00000000         000112467888898888888776 5  78999999999871         


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                               ++...+.|++.+|+++.||+ |.|+|..|.-
T Consensus       119 ---------~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A          119 ---------ENDRLWEVTLDNEEVVTCRFLISATGPLSAS  149 (545)
T ss_dssp             ---------GGGTEEEEEETTTEEEEEEEEEECCCSCBC-
T ss_pred             ---------CCCCEEEEEECCCCEEEeCEEEECcCCCCCC
Confidence                     13367899999999999999 9999987644

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.94  E-value=2.2e-09  Score=104.76  Aligned_cols=116  Identities=21%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ++||+||||||+|+++|+.|++.    |++|+|||+....   .|             .  .      ..          
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~----g~~v~li~~~~gG---~~-------------~--~------~~----------   42 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARK----GIRTGLMGERFGG---QI-------------L--D------TV----------   42 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSTTG---GG-------------G--G------CC----------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCc---ee-------------c--c------cc----------
Confidence            47999999999999999999996    9999999864200   00             0  0      00          


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                           .+  .+        +.     ..   ...++..+...|.+.+++.+ ++++++++|+.++.         +.+  
T Consensus        43 -----~~--~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~---------~~~--   87 (310)
T 1fl2_A           43 -----DI--EN--------YI-----SV---PKTEGQKLAGALKVHVDEYD-VDVIDSQSASKLIP---------AAV--   87 (310)
T ss_dssp             -----EE--CC--------BT-----TB---SSEEHHHHHHHHHHHHHTSC-EEEECSCCEEEEEC---------CSS--
T ss_pred             -----cc--cc--------cc-----Cc---CCCCHHHHHHHHHHHHHHcC-CeEEccCEEEEEEe---------ccc--
Confidence                 00  00        00     00   01356788888988888877 99999999999975         100  


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .+..+.|.+++|.++.+|. |.|+|.++..
T Consensus        88 ------~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           88 ------EGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ------TTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             ------CCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence                  1246788888888899999 9999987643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.93  E-value=3.7e-09  Score=112.58  Aligned_cols=65  Identities=18%  Similarity=0.203  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe--eEEE-eCCCc--EEEeeE-EEec
Q 010225          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL--AKLD-LSDGT--SLYAKL-VGAD  243 (514)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~-~~~g~--~~~ad~-V~Ad  243 (514)
                      ...+...|.+.+.+.++++|+++++|+++..                   +++..  +.+. ..+|+  ++.|+. |.|+
T Consensus       133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-------------------~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAt  193 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-------------------DDGHVRGLVAMNMMEGTLVQIRANAVVMAT  193 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-------------------ETTEEEEEEEEETTTTEEEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------eCCEEEEEEEEEcCCCcEEEEEcCeEEECC
Confidence            3578899999998887799999999999986                   11222  2222 35776  699999 9999


Q ss_pred             CCCchhhhhh
Q 010225          244 GGKSRVRELA  253 (514)
Q Consensus       244 G~~S~vR~~l  253 (514)
                      |.+|.++...
T Consensus       194 Gg~s~~~~~~  203 (602)
T 1kf6_A          194 GGAGRVYRYN  203 (602)
T ss_dssp             CCCGGGSSSB
T ss_pred             CCCcccccCc
Confidence            9999997654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.92  E-value=2.3e-07  Score=95.47  Aligned_cols=40  Identities=43%  Similarity=0.569  Sum_probs=36.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      .++||+|||||++||++|+.|++.    |++|+|+|+++.++..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~GG~   43 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA----GLSVAVIEARDRVGGR   43 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEECCCCCCCc
Confidence            468999999999999999999996    9999999999877544

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.91  E-value=1.3e-09  Score=112.85  Aligned_cols=148  Identities=11%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             ccEEEECCCHHHHHHHHHhcc---CCCCCCcE---EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH
Q 010225           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLS---VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~---V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (514)
                      +||+||||||+|+++|..|++   .    |++   |+|||+.+.++....+...   .    +..+        .|+.. 
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~----G~~~~~V~v~E~~~~~GG~w~~~~~---~----g~~~--------~g~~~-   62 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK----GAEIPELVCFEKQADWGGQWNYTWR---T----GLDE--------NGEPV-   62 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT----TCCCCEEEEECSSSSSCGGGSCCSC---C----SBCT--------TSSBC-
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc----CCCCCcEEEEEcCCCCCCEeecCCC---C----Cccc--------cCCCC-
Confidence            699999999999999999998   7    888   9999999876422111000   0    0000        01000 


Q ss_pred             HHhhhccCcceEEEEeCCCcce-----eeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCce--EEcCCeeEEEeeCC
Q 010225          130 VQQHRHAYFDKMQVWDYTGLGY-----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLP  202 (514)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--v~~~~~v~~v~~~~  202 (514)
                       ..   ..+..+.  .......     ..++.. .. ......+++..+.++|.+.+++.+ ++  ++++++|++++.. 
T Consensus        63 -~~---~~y~~l~--~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~l~~~~~~~g-v~~~i~~~~~V~~v~~~-  132 (464)
T 2xve_A           63 -HS---SMYRYLW--SNGPKECLEFADYTFDEH-FG-KPIASYPPREVLWDYIKGRVEKAG-VRKYIRFNTAVRHVEFN-  132 (464)
T ss_dssp             -CC---CCCTTCB--CSSCGGGTCBTTBCHHHH-HS-SCCCSSCBHHHHHHHHHHHHHHHT-CGGGEECSEEEEEEEEE-
T ss_pred             -cC---ccccchh--hcCChhhcccCCCCCCcc-cC-CCCCCCCCHHHHHHHHHHHHHHcC-CcceEEeCCEEEEEEEc-
Confidence             00   0000000  0000000     000000 00 000123578899999999988876 77  9999999999861 


Q ss_pred             CCCCcccCCCCccccccccCCeeEEEeCC---C--cEEEeeE-EEecCCCchhh
Q 010225          203 SSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~-V~AdG~~S~vR  250 (514)
                                       ++...+.|.+.+   |  .++.+|. |.|+|.+|.-+
T Consensus       133 -----------------~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          133 -----------------EDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             -----------------TTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBC
T ss_pred             -----------------CCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCc
Confidence                             012356776654   4  4689999 99999876554

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.91  E-value=3e-09  Score=105.13  Aligned_cols=116  Identities=17%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (514)
                      +++.+||+||||||+|+++|+.|++.    |++|+|||+....               +. +.                 
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~g---------------g~-~~-----------------   53 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARA----QLAPLVFEGTSFG---------------GA-LM-----------------   53 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHT----TCCCEEECCSSCS---------------CG-GG-----------------
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCC---------------Cc-ee-----------------
Confidence            34568999999999999999999996    9999999975311               00 00                 


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .  .....             .++  ...     ..+.+..+...|.+.+.+.+ +++++++ |++++.           
T Consensus        54 ~--~~~~~-------------~~~--~~~-----~~~~~~~~~~~l~~~~~~~~-v~~~~~~-v~~i~~-----------   98 (335)
T 2a87_A           54 T--TTDVE-------------NYP--GFR-----NGITGPELMDEMREQALRFG-ADLRMED-VESVSL-----------   98 (335)
T ss_dssp             S--CSCBC-------------CST--TCT-----TCBCHHHHHHHHHHHHHHTT-CEEECCC-EEEEEC-----------
T ss_pred             c--cchhh-------------hcC--CCC-----CCCCHHHHHHHHHHHHHHcC-CEEEEee-EEEEEe-----------
Confidence            0  00000             000  000     01456778888888888877 9999986 888853           


Q ss_pred             CCccccccccCCeeEE-EeCCCcEEEeeE-EEecCCCchh
Q 010225          212 TPSATTLFTKGHLAKL-DLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v-~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                                .+.+.| .+.+|.++.+|. |.|+|.++..
T Consensus        99 ----------~~~~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           99 ----------HGPLKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             ----------SSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             ----------CCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence                      134566 677888899999 9999986643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.90  E-value=2.1e-09  Score=105.29  Aligned_cols=114  Identities=15%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +.+||+||||||+|+++|+.|++.    |++|+|||+.. ++              + .+                 .. 
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g-~~-----------------~~-   45 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME-KG--------------G-QL-----------------TT-   45 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----TCCCEEECCSS-TT--------------G-GG-----------------GG-
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEccCC-CC--------------c-eE-----------------ec-
Confidence            458999999999999999999996    99999999653 21              0 00                 00 


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       .....             .++  ...     ..+.+..+...+.+.+.+.+ +++++++ |+.++.             
T Consensus        46 -~~~~~-------------~~~--~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~-v~~i~~-------------   89 (320)
T 1trb_A           46 -TTEVE-------------NWP--GDP-----NDLTGPLLMERMHEHATKFE-TEIIFDH-INKVDL-------------   89 (320)
T ss_dssp             -CSBCC-------------CST--TCC-----SSCBHHHHHHHHHHHHHHTT-CEEECCC-EEEEEC-------------
T ss_pred             -chhhh-------------hCC--CCC-----CCCCHHHHHHHHHHHHHHCC-CEEEEee-eeEEEe-------------
Confidence             00000             000  000     01356778888888888887 9999985 888875             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             ..+.+.+ ..++.++.+|. |.|+|..+..
T Consensus        90 -------~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           90 -------QNRPFRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             -------SSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             -------cCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence                   3355666 56788899999 9999987543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.90  E-value=3.3e-08  Score=103.31  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=49.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC-CCCceE---EeChhhHHHHHHcCCc
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP-PDPRVS---TVTPATISFFKEIGAW  127 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~-~~-~~~~~~---~l~~~~~~~l~~lgl~  127 (514)
                      .+.+||+|||||++||++|+.|++.    |++|+|+|+.+.++........ .. ......   ...+...++++++|+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~   86 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIH----GLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLR   86 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTT----SCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCc
Confidence            3468999999999999999999996    9999999999987543211000 00 000001   1246678888999875


Q ss_pred             HH
Q 010225          128 QY  129 (514)
Q Consensus       128 ~~  129 (514)
                      +.
T Consensus        87 ~~   88 (504)
T 1sez_A           87 EK   88 (504)
T ss_dssp             GG
T ss_pred             cc
Confidence            43

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.90  E-value=2.9e-09  Score=110.20  Aligned_cols=154  Identities=14%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC-----cEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcH
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-----LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ  128 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-----~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~  128 (514)
                      ..+||+||||||+|+++|+.|++.    |     ++|+|||+.+.++....   ...   .+..++..   +++.+.-  
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~----g~~~~~~~v~liE~~~~~g~~~~---~~~---~~~~~~~~---~~~~l~~--   93 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER----AQAQGALEVLFLDKQGDYRWHGN---TLV---SQSELQIS---FLKDLVS--   93 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH----HHHHCCCCEEEEESCSSCCSSGG---GCC---SSCBCSSC---TTSSSST--
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc----ccccCcccEEEEecCCCCCCcCC---CCC---CCCcCCcc---hhhcccc--
Confidence            458999999999999999999996    8     89999999987641110   000   00001000   0000000  


Q ss_pred             HHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (514)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~  208 (514)
                       +.. ....+....+....+ ....+.      ........+..+..+|...+.+.+ ++++++++|++++..       
T Consensus        94 -~~~-p~~~~~~~~~l~~~~-~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~~V~~i~~~-------  156 (463)
T 3s5w_A           94 -LRN-PTSPYSFVNYLHKHD-RLVDFI------NLGTFYPCRMEFNDYLRWVASHFQ-EQSRYGEEVLRIEPM-------  156 (463)
T ss_dssp             -TTC-TTCTTSHHHHHHHTT-CHHHHH------HHCCSCCBHHHHHHHHHHHHTTCT-TTEEESEEEEEEEEE-------
T ss_pred             -ccC-CCCCCChhHhhhhcC-ceeecc------cccCCCCCHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEEe-------
Confidence             000 000000000000000 000000      000122467889999999888887 899999999999861       


Q ss_pred             cCCCCccccccccCCe--eEEEeCCCc----EEEeeE-EEecCCCchh
Q 010225          209 VDSTPSATTLFTKGHL--AKLDLSDGT----SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       209 ~~~~~~~~~~~~~~~~--~~v~~~~g~----~~~ad~-V~AdG~~S~v  249 (514)
                        .        +.+..  +.|...+|.    ++.||. |.|+|....+
T Consensus       157 --~--------~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~~  194 (463)
T 3s5w_A          157 --L--------SAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRI  194 (463)
T ss_dssp             --E--------ETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEECC
T ss_pred             --c--------CCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCCC
Confidence              0        01222  467766665    799999 9999985443

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.84  E-value=1.6e-07  Score=102.48  Aligned_cols=39  Identities=23%  Similarity=0.508  Sum_probs=35.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ..+||+|||||++|+++|+.|++.    |++|+|+|+.+.++.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNF----GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEecccceec
Confidence            468999999999999999999996    999999999887764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.84  E-value=7.3e-09  Score=108.97  Aligned_cols=38  Identities=29%  Similarity=0.576  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||||++||++|+.|++     |.+|+||||.+..+
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-----G~~V~vlEk~~~~~   43 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-----QHQVIVLSKGPVTE   43 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-----TSCEEEECSSCTTC
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-----CCcEEEEECCCCCC
Confidence            346899999999999999999998     68999999998654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.83  E-value=1.5e-08  Score=104.86  Aligned_cols=61  Identities=18%  Similarity=0.114  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCee-EEEeC-CCcEEEeeE-EEecCCC
Q 010225          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLS-DGTSLYAKL-VGADGGK  246 (514)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~g~~~~ad~-V~AdG~~  246 (514)
                      ...+.+.|.+.+++.+ ++++++++| ++..                    +++.+ .+... ++.++.||. |.|+|.+
T Consensus       118 g~~l~~~L~~~~~~~g-v~i~~~~~v-~l~~--------------------~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~  175 (472)
T 2e5v_A          118 GREIFNFLLKLAREEG-IPIIEDRLV-EIRV--------------------KDGKVTGFVTEKRGLVEDVDKLVLATGGY  175 (472)
T ss_dssp             HHHHHHHHHHHHHHTT-CCEECCCEE-EEEE--------------------ETTEEEEEEETTTEEECCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCC-CEEEECcEE-EEEE--------------------eCCEEEEEEEEeCCCeEEeeeEEECCCCC
Confidence            4678888999887666 999999999 9976                    22322 33332 223477999 9999999


Q ss_pred             chhhhh
Q 010225          247 SRVREL  252 (514)
Q Consensus       247 S~vR~~  252 (514)
                      |.+...
T Consensus       176 ~~~~~~  181 (472)
T 2e5v_A          176 SYLYEY  181 (472)
T ss_dssp             GGGSSS
T ss_pred             cccCcc
Confidence            988654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.83  E-value=1.4e-08  Score=99.14  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ..|||+||||||||+++|+.|++.    |++|+|||+....+.  |      ..  + .+.                 . 
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~----g~~v~liE~~~~gg~--~------~~--G-~~~-----------------~-   49 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRS----SLKPVMYEGFMAGGV--A------AG--G-QLT-----------------T-   49 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSGGGC--C------TT--C-GGG-----------------G-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCc--c------cC--C-CcC-----------------C-
Confidence            469999999999999999999996    999999998764310  0      00  0 000                 0 


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                          ..  .+.+..+             .+  ..++..++...+.+.+++.+ +++... .+.....             
T Consensus        50 ----~~--~i~~~~g-------------~~--~~i~~~~l~~~~~~~~~~~~-~~~~~~-~v~~~~~-------------   93 (314)
T 4a5l_A           50 ----TT--IIENFPG-------------FP--NGIDGNELMMNMRTQSEKYG-TTIITE-TIDHVDF-------------   93 (314)
T ss_dssp             ----SS--EECCSTT-------------CT--TCEEHHHHHHHHHHHHHHTT-CEEECC-CEEEEEC-------------
T ss_pred             ----hH--HhhhccC-------------Cc--ccCCHHHHHHHHHHHHhhcC-cEEEEe-EEEEeec-------------
Confidence                00  0000000             00  01456778888888888877 776665 5665554             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                             ......+...++.++.+|. |.|+|...
T Consensus        94 -------~~~~~~~~~~~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           94 -------STQPFKLFTEEGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             -------SSSSEEEEETTCCEEEEEEEEECCCEEE
T ss_pred             -------CCCceEEEECCCeEEEEeEEEEcccccc
Confidence                   3345666677888999999 99999743

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.82  E-value=1.4e-08  Score=108.00  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||||++||++|+.|++.    |.+|+||||.+..+
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~----G~~V~vlEK~~~~~   43 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQS----GQTCALLSKVFPTR   43 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            468999999999999999999996    99999999987653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.80  E-value=1.2e-08  Score=107.04  Aligned_cols=117  Identities=22%  Similarity=0.306  Sum_probs=83.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|+|+....   .|      .       .        ..++      
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~----G~~v~lie~~~GG---~~------~-------~--------~~~~------  255 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARK----GIRTGLMGERFGG---QV------L-------D--------TVDI------  255 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTTG---GG------T-------T--------CSCB------
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhC----CCeEEEEECCCCC---cc------c-------c--------cccc------
Confidence            4578999999999999999999996    9999999863210   00      0       0        0000      


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                            .             .+.     ...   ......+...|.+.+++.+ ++++.+++|+.+..         +. 
T Consensus       256 ------~-------------~~~-----~~~---~~~~~~l~~~l~~~~~~~g-v~v~~~~~v~~i~~---------~~-  297 (521)
T 1hyu_A          256 ------E-------------NYI-----SVP---KTEGQKLAGALKAHVSDYD-VDVIDSQSASKLVP---------AA-  297 (521)
T ss_dssp             ------C-------------CBT-----TBS---SBCHHHHHHHHHHHHHTSC-EEEECSCCEEEEEC---------CS-
T ss_pred             ------c-------------ccC-----CCC---CCCHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe---------cc-
Confidence                  0             000     000   1346778888999998887 99999999999975         10 


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                             +.++.+.|.+.+|.++.+|. |.|+|.++.
T Consensus       298 -------~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          298 -------TEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             -------STTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             -------CCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence                   01246788888898999999 999998654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.80  E-value=4.4e-08  Score=102.17  Aligned_cols=58  Identities=14%  Similarity=0.068  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      ..+.+.|.+.+.+.|+++|+++++|++|+.                    .++.+.|++.+|+++.||. |.|.|....
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVN--------------------ERDAARVTARDGREFVAKRVVCTIPLNVL  313 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEE--------------------CSSSEEEEETTCCEEEEEEEEECCCGGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEE--------------------cCCEEEEEECCCCEEEcCEEEECCCHHHH
Confidence            456677777777765588999999999987                    3456888888998899999 999997543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.77  E-value=6.6e-09  Score=110.66  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||||||||++||++|+.|++.    |.+|+||||....+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~----G~~V~vlEK~~~~~   54 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEA----GFNTACVTKLFPTR   54 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence            468999999999999999999996    99999999987553

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.75  E-value=5.2e-08  Score=104.50  Aligned_cols=38  Identities=26%  Similarity=0.413  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.++||||||||++||++|+.|++.    |.+|+||||....
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~----G~~V~vlEK~~~~   40 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQK----GLSTIVLSLIPVK   40 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHC----CCcEEEEeccCCC
Confidence            3468999999999999999999996    9999999998765

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.74  E-value=4.2e-08  Score=95.73  Aligned_cols=36  Identities=25%  Similarity=0.507  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|||+||||||||+++|+.|++.    |++|+|||++.
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~----g~~V~liE~~~   39 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRA----NLKTVMIERGI   39 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC
Confidence            4579999999999999999999997    99999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.73  E-value=1.3e-08  Score=105.18  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeC---hhhHHHHHHcCCcHHHH
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT---PATISFFKEIGAWQYVQ  131 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~l~~lgl~~~~~  131 (514)
                      ++||+||||||+|+++|+.|++.    |++|+|||++. .+              +..+.   ..+..++...++++.+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~----G~~V~liE~~~-~g--------------G~~~~~g~~psk~ll~~~~~~~~~~   63 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL----GLSTAIVEPKY-WG--------------GVCLNVGCIPSKALLRNAELVHIFT   63 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC-TT--------------HHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCC-CC--------------CcccccCchhhHHHHHHHHHHHHHH
Confidence            58999999999999999999996    99999999983 21              11111   12333444444444443


Q ss_pred             hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .... . ..+.  ..   ....+..  ..... ..  -...+...+.+.+++.+ ++++.++.+. +             
T Consensus        64 ~~~~-~-~g~~--~~---~~~~~~~--~~~~~-~~--~~~~l~~~l~~~~~~~g-v~~~~g~~~~-i-------------  116 (464)
T 2a8x_A           64 KDAK-A-FGIS--GE---VTFDYGI--AYDRS-RK--VAEGRVAGVHFLMKKNK-ITEIHGYGTF-A-------------  116 (464)
T ss_dssp             HHTT-T-TTEE--EC---CEECHHH--HHHHH-HH--HHHHHHHHHHHHHHHTT-CEEECEEEEE-S-------------
T ss_pred             HHHH-h-cCCC--CC---CccCHHH--HHHHH-HH--HHHHHHHHHHHHHHhCC-CEEEEeEEEE-e-------------
Confidence            1111 1 1121  10   0111100  00000 00  01334555666676665 9999987543 3             


Q ss_pred             CCccccccccCCeeEEEeCCC--cEEEeeE-EEecCCCchhhh
Q 010225          212 TPSATTLFTKGHLAKLDLSDG--TSLYAKL-VGADGGKSRVRE  251 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g--~~~~ad~-V~AdG~~S~vR~  251 (514)
                               +.+.+.|.+.+|  .++.+|. |.|+|..+.+..
T Consensus       117 ---------d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~  150 (464)
T 2a8x_A          117 ---------DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP  150 (464)
T ss_dssp             ---------SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT
T ss_pred             ---------cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence                     225677888788  6899999 999999876533

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.72  E-value=2.1e-08  Score=104.24  Aligned_cols=58  Identities=17%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      ..+...|.+.+++.| ++++++++|++++.                    .++.+.|.+.+|+++.||. |.|.|..+..
T Consensus       232 ~~~~~~l~~~l~~~G-v~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKG-ISIIYEATVSQVQS--------------------TENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHHT-CEEESSCCEEEEEE--------------------CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------------eCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            346777778888777 99999999999986                    3455788899998999999 9999986655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.70  E-value=1.5e-08  Score=105.19  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~----G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCc
Confidence            468999999999999999999996    9999999997654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.68  E-value=1.5e-08  Score=103.67  Aligned_cols=37  Identities=19%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~   94 (514)
                      +.+||+|||||++|+++|..|++.    |+  +|+|||+.+..
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~----g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRAS----GWEGNIRLVGDATVI   41 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCCSC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHcc----CcCCCEEEEECCCCC
Confidence            468999999999999999999996    77  89999988743

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.66  E-value=8.1e-08  Score=103.16  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhc---c-CCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLA---S-MPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~---~-~~~~~g~~V~viE~~~~~   94 (514)
                      .++||||||||++||++|+.|+   + .    |.+|+||||....
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~----G~~V~vlEK~~~~   61 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG----GLKVTLVEKAAVE   61 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT----TCCEEEECSSCTT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC----CCeEEEEeCcCCC
Confidence            4689999999999999999999   5 5    8999999999854

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.62  E-value=5.1e-08  Score=100.99  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~----g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            468999999999999999999996    9999999998755

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.62  E-value=6.5e-08  Score=100.06  Aligned_cols=37  Identities=35%  Similarity=0.473  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +++||+||||||+|+++|+.|++.    |++|+||||++.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~----G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA----KYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC----CCeEEEEECCCCC
Confidence            368999999999999999999996    9999999987765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.61  E-value=1.4e-08  Score=105.60  Aligned_cols=38  Identities=42%  Similarity=0.621  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.++||+|||||++|+++|+.|++.    |++|+|||+++.+
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~----G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCC
Confidence            3468999999999999999999996    9999999997654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.61  E-value=9.3e-08  Score=93.07  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=75.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEE-EcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAI-IDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~v-iE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..+||+|||||++|+++|+.|++.    |++|+| +||.. ++.. |              . ..       .       
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~li~e~~~-~gG~-~--------------~-~~-------~-------   47 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRG----GLKNVVMFEKGM-PGGQ-I--------------T-SS-------S-------   47 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH----TCSCEEEECSSS-TTGG-G--------------G-GC-------S-------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC----CCCeEEEEeCCC-CCce-e--------------e-ee-------c-------
Confidence            458999999999999999999996    999999 99933 3100 0              0 00       0       


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                          .+.             .++     ..  ...+....+...+.+.+++.+ ++++++ +|+++ .            
T Consensus        48 ----~~~-------------~~~-----~~--~~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i-~------------   88 (315)
T 3r9u_A           48 ----EIE-------------NYP-----GV--AQVMDGISFMAPWSEQCMRFG-LKHEMV-GVEQI-L------------   88 (315)
T ss_dssp             ----CBC-------------CST-----TC--CSCBCHHHHHHHHHHHHTTTC-CEEECC-CEEEE-E------------
T ss_pred             ----eec-------------cCC-----CC--CCCCCHHHHHHHHHHHHHHcC-cEEEEE-EEEEE-e------------
Confidence                000             000     00  012457888999999999887 999998 89998 6            


Q ss_pred             CccccccccC--CeeEEEe-CCCcEEEeeE-EEecCCC
Q 010225          213 PSATTLFTKG--HLAKLDL-SDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       213 ~~~~~~~~~~--~~~~v~~-~~g~~~~ad~-V~AdG~~  246 (514)
                              ++  +.+.+.. .++ ++.+|. |.|+|..
T Consensus        89 --------~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           89 --------KNSDGSFTIKLEGGK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             --------ECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred             --------cCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence                    22  4466422 234 899999 9999974

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.60  E-value=9.8e-07  Score=91.33  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~   97 (514)
                      ..+||+|||||++|+++|+.|++.    |+ +|+|+|+++.++..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~----g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA----GITDLLILEATDHIGGR   43 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT----TCCCEEEECSSSSSBTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCCceEEEeCCCCCCCc
Confidence            457999999999999999999996    88 89999999876543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.58  E-value=2e-07  Score=97.26  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC-----cEEEeeE-E
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKL-V  240 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~-V  240 (514)
                      ...|.++.++|...+++.+ ..|+++++|++++..+.+.       ..     ...+.++|+..++     .++.|+. |
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~-~~vrf~~~V~~v~~~~~~~-------~~-----~~~~~~~V~~~~~~~g~~~~~~ar~vV  207 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFS-DVVAYGEEVVEVIPGKSDP-------SS-----SVVDFFTVRSRNVETGEISARRTRKVV  207 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTG-GGEEESEEEEEEEEECSST-------TS-----SCBCEEEEEEEETTTCCEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcC-CceEcceEEEeeccccccc-------cc-----cccceEEEEEecCCCceEEEEEeCEEE
Confidence            3579999999999999887 7899999999998721100       00     0224577776554     2689999 9


Q ss_pred             EecCCC
Q 010225          241 GADGGK  246 (514)
Q Consensus       241 ~AdG~~  246 (514)
                      .|+|..
T Consensus       208 latG~~  213 (501)
T 4b63_A          208 IAIGGT  213 (501)
T ss_dssp             ECCCCE
T ss_pred             ECcCCC
Confidence            999954

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.56  E-value=2.3e-07  Score=99.43  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccC-----CCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASM-----PLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~-----~~~~g~~V~viE~~~~~~   95 (514)
                      .++||||||||++||++|+.|++.     +   |.+|+||||....+
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~p---G~~V~vleK~~~~~   64 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAP---EAKILLVDKASLER   64 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCT---TCCEEEECSSCTTT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCC---CCcEEEEEecCCCC
Confidence            468999999999999999999983     1   79999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.53  E-value=5e-08  Score=99.37  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcE--EEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLS--VAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~--V~viE~~~~~   94 (514)
                      .+.+||+|||||++|+++|..|++.    |++  |+|||+.+..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~----g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQN----GFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT----TCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHcc----CcCCCEEEEecCCCC
Confidence            3568999999999999999999996    776  9999998854

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.48  E-value=2.4e-07  Score=97.18  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe---eEEEeCCCc-EEEeeE-EEecCC
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL---AKLDLSDGT-SLYAKL-VGADGG  245 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~g~-~~~ad~-V~AdG~  245 (514)
                      ..+.+.|.+.+++.| ++++++++|++++..                   .++.   +.|.+.+|+ ++.||. |.|.|.
T Consensus       255 ~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~~-------------------~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~  314 (523)
T 1mo9_A          255 NETRAYVLDRMKEQG-MEIISGSNVTRIEED-------------------ANGRVQAVVAMTPNGEMRIETDFVFLGLGE  314 (523)
T ss_dssp             HHHHHHHHHHHHHTT-CEEESSCEEEEEEEC-------------------TTSBEEEEEEEETTEEEEEECSCEEECCCC
T ss_pred             HHHHHHHHHHHHhCC-cEEEECCEEEEEEEc-------------------CCCceEEEEEEECCCcEEEEcCEEEECcCC
Confidence            456778888888887 999999999999750                   1122   678888887 899999 999998


Q ss_pred             Cchh
Q 010225          246 KSRV  249 (514)
Q Consensus       246 ~S~v  249 (514)
                      .+..
T Consensus       315 ~p~~  318 (523)
T 1mo9_A          315 QPRS  318 (523)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            8765

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.47  E-value=2.9e-07  Score=92.60  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++.+|+|||||+||+++|..|.+.    +.+|+|||+.+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~----~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGK----CDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTT----CSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCC----CCEEEEEECCCCC
Confidence            467899999999999999999664    8999999999865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.47  E-value=1.5e-07  Score=96.93  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +||+|||||++|+++|+.|++..  .|++|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~--~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKY--PQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--SSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            59999999999999999999852  38999999999865

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.46  E-value=2.2e-07  Score=97.39  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=34.7

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +++..+|||+||||||+|+++|+.|++.    |++|+|||+++
T Consensus        27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~----G~~V~liEk~~   65 (519)
T 3qfa_A           27 LPKSYDYDLIIIGGGSGGLAAAKEAAQY----GKKVMVLDFVT   65 (519)
T ss_dssp             CCSSCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCCC
T ss_pred             cCcCCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeccC
Confidence            3345679999999999999999999997    99999999975

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.46  E-value=1.3e-06  Score=89.43  Aligned_cols=57  Identities=9%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|..         +         +++..+.|.+.+|+++.||. |.+.|..
T Consensus       256 ~~L~~aL~r~~~~~G-g~i~l~t~V~~I~~---------d---------~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAING-GTFMLNKNVVDFVF---------D---------DDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC---CEESSCCEEEEEE---------C---------TTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCeEEEEEE---------e---------cCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            567788888888888 89999999999976         1         12345678888998999999 9999876

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.46  E-value=3.6e-07  Score=94.67  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=34.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.++||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~~~   41 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQL----GFKTVCIEKNETL   41 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCc
Confidence            3468999999999999999999996    9999999998755

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.46  E-value=2.8e-07  Score=94.96  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ++||+|||||++|+++|..|++.    |++|+|||+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC----CCeEEEEECC
Confidence            58999999999999999999996    9999999998

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.44  E-value=1.3e-07  Score=95.90  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~   94 (514)
                      +++||+|||||++|+++|..|++.    |+  +|+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQA----GYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHH----TCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc----CCCCeEEEEECCCCC
Confidence            468999999999999999999996    66  59999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.43  E-value=4.3e-07  Score=93.41  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=33.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+||+|||||++|+++|+.|++.+  .|++|+|||+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~--~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLK--PEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhC--cCCCEEEEECCCcc
Confidence            479999999999999999999852  37899999998855

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.42  E-value=4.6e-07  Score=94.32  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++++||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~----G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQL----GMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            4569999999999999999999996    9999999998755

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.41  E-value=4.4e-07  Score=92.97  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~   93 (514)
                      .||+|||||++|+++|+.|++   .    |++|+|||+++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~----g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGS----GHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGG----GSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCC----cCEEEEEeCCCC
Confidence            689999999999999999998   5    899999999884

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.41  E-value=4.2e-07  Score=94.14  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++||+|||||++|+++|+.|++..  .|++|+|||+++..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~--~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLD--PEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHC--TTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhC--cCCCEEEEECCCcc
Confidence            469999999999999999999842  38999999999865

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.40  E-value=5.7e-07  Score=92.99  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=33.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++||+|||||++|+++|+.|++.    |++|+|||+++.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL----GMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            58999999999999999999996    9999999998755

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.40  E-value=4.1e-07  Score=89.31  Aligned_cols=69  Identities=25%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA  126 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl  126 (514)
                      ..++||+||||||+||++|+.|++..  .|++|+||||.+.++..-++.   ........+......+++++|+
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r--~G~~V~viEk~~~~GG~~~~~---~~~~~~~~l~~~~~~~~~e~Gv  131 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGGSWLG---GQLFSAMVMRKPAHLFLQELEI  131 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTTTTCC---STTCCCEEEETTTHHHHHHTTC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhC--CCCeEEEEECCCCCCceEEeC---CccCCHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999997420  299999999998775332211   1111223455555666666654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.38  E-value=4e-07  Score=93.83  Aligned_cols=36  Identities=31%  Similarity=0.540  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL----GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC----CCeEEEEeCCCCC
Confidence            37999999999999999999996    9999999998655

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.38  E-value=5.5e-07  Score=93.65  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC---cEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g---~~V~viE~~~~~   94 (514)
                      +++||+|||||++|+++|..|++.    |   .+|+|||+++..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~----g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTN----YGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----HGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhc----CCCCCeEEEEECCCCC
Confidence            458999999999999999999996    6   999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.37  E-value=1.2e-06  Score=88.08  Aligned_cols=100  Identities=21%  Similarity=0.306  Sum_probs=80.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+.+|..|++.    |.+|+|+|+.+.+.          .                            
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~----------~----------------------------  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSG----GYQLDVVAPCEQVM----------P----------------------------  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCcchh----------h----------------------------
Confidence            46899999999999999999996    99999999987541          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                   .                   .....+.+.|.+.+++.| ++++++++|++++.              
T Consensus       183 -------------~-------------------~~~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  215 (384)
T 2v3a_A          183 -------------G-------------------LLHPAAAKAVQAGLEGLG-VRFHLGPVLASLKK--------------  215 (384)
T ss_dssp             -------------T-------------------TSCHHHHHHHHHHHHTTT-CEEEESCCEEEEEE--------------
T ss_pred             -------------c-------------------ccCHHHHHHHHHHHHHcC-CEEEeCCEEEEEEe--------------
Confidence                         0                   001335567777777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+.+|+++.||. |.|.|..+..
T Consensus       216 ------~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          216 ------AGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             ------ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ------cCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence                  3356788888999999999 9999987765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.35  E-value=7.7e-07  Score=88.92  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .-||+||||||+|+++|..|++.    | +|+|||+++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~----g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT----Y-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT----S-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc----C-CEEEEECCCCC
Confidence            46999999999999999999996    8 99999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.34  E-value=2.2e-07  Score=94.18  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~   94 (514)
                      .||+|||||++|+++|..|++.    |+  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~----g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA----KYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh----CcCCCEEEEeCCCCC
Confidence            5899999999999999999996    77  89999998854

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.34  E-value=1.4e-07  Score=97.94  Aligned_cols=38  Identities=16%  Similarity=0.371  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+||+|||||++|+++|+.|++.+  +|.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~--~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRND--ENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHC--TTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            369999999999999999999842  38999999998754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.33  E-value=2.8e-06  Score=87.46  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+.+|..|++.    |.+|+|+|+.+.+.          +.     .                     
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~----g~~V~lv~~~~~~l----------~~-----~---------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRL----GAEVIVLEYMDRIL----------PT-----M---------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCCccc----------cc-----c---------------------
Confidence            46899999999999999999996    99999999987541          00     0                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+.+.|.+.+++.| ++++++++|++++.              
T Consensus       207 -----------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~V~~i~~--------------  236 (455)
T 2yqu_A          207 -----------------------------------DLEVSRAAERVFKKQG-LTIRTGVRVTAVVP--------------  236 (455)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHT-CEEECSCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence                                               0134455566666666 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+|+++.+|. |.|+|..+..
T Consensus       237 ------~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          237 ------EAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ------ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ------eCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                  3356778888888999999 9999988765

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.33  E-value=8e-07  Score=90.22  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcE--EEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLS--VAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~--V~viE~~~~~   94 (514)
                      .+|+|||||++|+++|..|++.    |++  |+|||+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~----g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE----GFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc----CcCCeEEEEECCCCC
Confidence            4899999999999999999996    766  9999998854

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.33  E-value=1.7e-07  Score=95.14  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHhcc---CCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~g~~V~viE~~~~~   94 (514)
                      .||+|||||++|+++|+.|++   .    |++|+|||+++..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~----g~~V~vie~~~~~   39 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGS----KADVKVINKSRFS   39 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGG----GSEEEEEESSSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCC----CCeEEEEeCCCCc
Confidence            479999999999999999998   6    8999999998843

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.32  E-value=1.1e-06  Score=90.80  Aligned_cols=34  Identities=32%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|||+.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~----G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAAL----GKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT----TCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhC----CCEEEEEeCC
Confidence            469999999999999999999996    9999999993

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.30  E-value=6.8e-07  Score=92.61  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~----G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL----GLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH----TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC----CCEEEEEeCCCcc
Confidence            469999999999999999999996    9999999998754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.29  E-value=1.7e-07  Score=96.59  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +||+|||||++|+++|..|++..  .|++|+|||+++..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~--~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADH--PDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            58999999999999999999842  38999999998754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.28  E-value=2.3e-07  Score=96.25  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=33.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++..+||+||||||+|+++|+.|++.    |++|+|||++.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~----G~~V~liE~~~   53 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAEL----GARAAVVESHK   53 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence            34569999999999999999999996    99999999764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.28  E-value=6.9e-07  Score=92.88  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|||+||||||+|+++|+.|++.    |++|+||||.+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~----G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQL----GKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEEecc
Confidence            3569999999999999999999997    99999999854

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.28  E-value=1e-06  Score=91.11  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ----GAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence            468999999999999999999996    99999999983

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.27  E-value=3.1e-06  Score=87.33  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=77.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          ..                           
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~---------------------------  207 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRL----GAEVTLIEYMPEIL----------PQ---------------------------  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------TT---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEEcCCccc----------cc---------------------------
Confidence            36899999999999999999996    99999999987541          00                           


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                        ....+.+.|.+.+++.| ++++++++|++++.              
T Consensus       208 ----------------------------------~~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  238 (464)
T 2eq6_A          208 ----------------------------------GDPETAALLRRALEKEG-IRVRTKTKAVGYEK--------------  238 (464)
T ss_dssp             ----------------------------------SCHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             ----------------------------------cCHHHHHHHHHHHHhcC-CEEEcCCEEEEEEE--------------
Confidence                                              01234566677777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeC-C--Cc--EEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLS-D--GT--SLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~--g~--~~~ad~-V~AdG~~S~vR  250 (514)
                            .++.+.+.+. +  |+  ++.||+ |.|.|..+.+.
T Consensus       239 ------~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          239 ------KKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             ------ETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred             ------eCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence                  3345667765 6  76  799999 99999876653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.27  E-value=1.1e-06  Score=93.47  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=34.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++..||+|||||++|+++|+.|++.+  .|++|+|||+++..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~--~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLS--EEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHC--SSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEECCCCc
Confidence            44679999999999999999999852  37999999999865

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.26  E-value=6.3e-07  Score=91.57  Aligned_cols=36  Identities=33%  Similarity=0.604  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|||||||++|+++|..|++.+  .+++|+|||+++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~--~~~~VtlI~~~~~   38 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLM--PDLKITLISDRPY   38 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--TTCEEEEECSSSE
T ss_pred             CcEEEECCCHHHHHHHHHHhccC--cCCeEEEEcCCCC
Confidence            47999999999999999999852  3589999999873

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.25  E-value=1.4e-06  Score=94.56  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...++||+||||||+|+++|+.|++.    |++|+|||+++..+
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~----G~~V~liE~~~~~G  427 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVR----GYDVVLAEAGRDLG  427 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSC
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC
Confidence            44578999999999999999999996    99999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.25  E-value=3.1e-07  Score=94.43  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +||+|||||++|+++|..|++..  +|.+|+|||+++..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~--~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLH--PDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--TTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhC--cCCeEEEEECCCcc
Confidence            48999999999999999999842  38999999998754

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.25  E-value=3.8e-07  Score=95.34  Aligned_cols=41  Identities=34%  Similarity=0.401  Sum_probs=36.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      +.+||||||||++||++|+.|+++   .|++|+|+|+++.++..
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~---~G~~V~VlE~~~~~GG~   49 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQI---DGPSWMIVDSNETPGGL   49 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH---CCSCEEEEESSSSCCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhh---CCCCEEEEECCCCCcCC
Confidence            468999999999999999999874   39999999999988643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.24  E-value=1.8e-06  Score=89.97  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCC-CcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTK-HLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-g~~V~viE~~~   92 (514)
                      ++||+|||||++|+++|+.|++..  + |++|+|||+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~--~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSH--PETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHC--TTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CCcCEEEEEeCCC
Confidence            589999999999999999999941  1 89999999987

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.23  E-value=3.1e-06  Score=87.32  Aligned_cols=35  Identities=34%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++||+|||||++|+++|..|++.    |++|+|||++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF----GKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC----CCcEEEEcCCC
Confidence            468999999999999999999996    99999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.23  E-value=3e-06  Score=87.12  Aligned_cols=100  Identities=19%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGL----GAKTHLFEMFDAPL----------P-----SFD--------------------  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCEEEEEEeCCchh----------h-----hhh--------------------
Confidence            45899999999999999999996    99999999887440          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.|.+.+++.| ++++++++|++++.              
T Consensus       208 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  236 (450)
T 1ges_A          208 ------------------------------------PMISETLVEVMNAEG-PQLHTNAIPKAVVK--------------  236 (450)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHS-CEEECSCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                                013445566666667 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           ++++.+.|.+.+|+++.||. |.|+|..+.+
T Consensus       237 -----~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          237 -----NTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----eCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                 11234778888998999999 9999987765

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.22  E-value=1.9e-05  Score=82.62  Aligned_cols=58  Identities=14%  Similarity=-0.005  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      .++...+.+.+++.| ++++.++.+..++.                    .++.+.|.+.++.++.+|. +.|.|....+
T Consensus       263 ~ei~~~l~~~l~~~g-i~~~~~~~v~~~~~--------------------~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQG-VMFKNGILPKKLTK--------------------MDDKILVEFSDKTSELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             HHHHHHHHHHHHHTT-CEEEETCCEEEEEE--------------------ETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             hhHHHHHHHHHHhhc-ceeecceEEEEEEe--------------------cCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence            456777888888888 99999999999987                    5578889999999999999 9999976655

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.22  E-value=1.8e-06  Score=89.15  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++||+||||||+|+++|..|++.    |++|+|||+++
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~----g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL----GLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            68999999999999999999996    99999999987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.21  E-value=2.2e-06  Score=88.96  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ...|||+||||||+|+++|+.|++.    |++|+||||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~----G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLN----GARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCEEEEEEec
Confidence            4579999999999999999999996    9999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=1.3e-06  Score=90.59  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++||+||||||+|+++|+.|++.    |++|+|||++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~----g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY----GAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----SCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC----CCcEEEEeCCC
Confidence            468999999999999999999996    99999999974

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.20  E-value=8.2e-06  Score=80.35  Aligned_cols=114  Identities=12%  Similarity=0.140  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCC-----CceEEeChhhHH----HHHHcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPD-----PRVSTVTPATIS----FFKEIGA  126 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~l~~lgl  126 (514)
                      +||+|||||++|+.+|+.|++.    |++|+|+|+++...............     .+|.... ++.-    -++.+|-
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~----G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSigG~~~~-~akGlL~~EIdaLGg   76 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL----GVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGET-NAKGLLQAEMRRAGS   76 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEECCTTTSCCSSCCSSCTTCCCSCCEEEECSTT-CHHHHHHHHHHHHTC
T ss_pred             CCEEEECchHHHHHHHHHHHHC----CCcEEEEeccCCcCCccccCCCccccccCcCCCccccc-cchhHHHHHHHHcCC
Confidence            6899999999999999999996    99999999987543222100000111     1111111 1222    2233331


Q ss_pred             cHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010225          127 WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (514)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v  198 (514)
                        .+.....  ...+             +      .-....++|..+...+.+.+++.++++++.+ +|+++
T Consensus        77 --~m~~~aD--~~~i-------------p------Ag~al~vDR~~f~~~~~~~le~~pni~l~q~-eV~~l  124 (443)
T 3g5s_A           77 --LVMEAAD--LARV-------------P------AGGALAVDREEFSGYITERLTGHPLLEVVRE-EVREI  124 (443)
T ss_dssp             --HHHHHHH--HSEE-------------C------CTTEEEECHHHHHHHHHHHHHTCTTEEEECS-CCCSC
T ss_pred             --hHhhhhh--hcCC-------------C------CCccccCCcHHHHHHHHHHHHcCCCeEEEhh-hhhhh
Confidence              1111000  0000             0      0122469999999999999999999998855 67766

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.20  E-value=4.8e-06  Score=85.55  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC----CCeEEEEcCCC
Confidence            468999999999999999999996    99999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.18  E-value=9.6e-07  Score=88.80  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~   92 (514)
                      ..+||+|||||++|+++|..|++.    |  .+|+|+|++.
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~----g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKL----DGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTT----CSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhh----CCCCCEEEEECCC
Confidence            358999999999999999999997    6  5799999876

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.17  E-value=5.7e-06  Score=85.96  Aligned_cols=33  Identities=36%  Similarity=0.545  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc-CCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~~~~g~~V~viE~   90 (514)
                      .++||+||||||+|+++|+.|++ .    |++|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~----G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH----KKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH----CCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc----CCEEEEEec
Confidence            36899999999999999999999 7    899999994

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.14  E-value=3.3e-07  Score=95.39  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..+||+|||||++|+++|..|++..  .|.+|+|||+.+..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~--~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARD--PGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHS--TTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcC--CCCeEEEEeCCCCC
Confidence            45689999999999999999887642  37899999998754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.13  E-value=5.8e-06  Score=83.49  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|||||||++|+++|..|++.+  .+.+|+|||+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~--~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLAD--PSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcC--cCCeEEEEeCCCC
Confidence            47999999999999999998863  3579999998874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.13  E-value=1.2e-05  Score=82.40  Aligned_cols=100  Identities=22%  Similarity=0.246  Sum_probs=76.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+|||||++|+.+|..|++.    |.+|+|+|+.+.+.          ..                          
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~--------------------------  187 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKA----GKKVTVIDILDRPL----------GV--------------------------  187 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------TT--------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCcccc----------cc--------------------------
Confidence            457999999999999999999996    99999999987541          00                          


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         .+                               ...+.+.+.+.+++.| ++++++++|++++.             
T Consensus       188 ---~~-------------------------------~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~-------------  219 (447)
T 1nhp_A          188 ---YL-------------------------------DKEFTDVLTEEMEANN-ITIATGETVERYEG-------------  219 (447)
T ss_dssp             ---TC-------------------------------CHHHHHHHHHHHHTTT-EEEEESCCEEEEEC-------------
T ss_pred             ---cC-------------------------------CHHHHHHHHHHHHhCC-CEEEcCCEEEEEEc-------------
Confidence               00                               0245667778888877 99999999999975             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             ++....+.+ ++.++.||. |.|.|.....
T Consensus       220 -------~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~  248 (447)
T 1nhp_A          220 -------DGRVQKVVT-DKNAYDADLVVVAVGVRPNT  248 (447)
T ss_dssp             -------SSBCCEEEE-SSCEEECSEEEECSCEEESC
T ss_pred             -------cCcEEEEEE-CCCEEECCEEEECcCCCCCh
Confidence                   222334555 566799999 9999976654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.13  E-value=7.4e-06  Score=84.44  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=76.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||.+|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~~--------------------  206 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSF----GSEVTVVALEDRLL----------F-----QFD--------------------  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCccc----------c-----ccC--------------------
Confidence            35899999999999999999996    99999999887440          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       207 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  235 (463)
T 2r9z_A          207 ------------------------------------PLLSATLAENMHAQG-IETHLEFAVAALER--------------  235 (463)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEESSCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                                012234556666667 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCc-EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGT-SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+.+|+ ++.+|. |.|.|..+.+
T Consensus       236 ------~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          236 ------DAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             ------ETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             ------eCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence                  2344788888998 899999 9999987654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.13  E-value=2.6e-06  Score=84.75  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC-CCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~-~~~~~   96 (514)
                      ...+||+|||||++||++|+.|++.    |++|+|||++ +.++.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~----G~~V~VlE~~~~~vGG   82 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRA----GHDVTILEANANRVGG   82 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHT----SCEEEEECSCSSCCBT
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHC----CCcEEEEeccccccCC
Confidence            4568999999999999999999997    9999999999 76654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.10  E-value=1.8e-06  Score=89.76  Aligned_cols=36  Identities=39%  Similarity=0.558  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||+||||||+|+++|+.|++    . ++|+|||+++.+
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~----~-~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQ----Y-LTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTT----T-CCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHh----c-CCEEEEeCCCCC
Confidence            35799999999999999999999    5 899999999865

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.09  E-value=2.3e-06  Score=88.03  Aligned_cols=42  Identities=31%  Similarity=0.379  Sum_probs=37.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ++.++||||||||++||++|+.|++.    |++|+|+|+++.++..
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVD----GKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCGG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCCcc
Confidence            34578999999999999999999996    9999999999988644

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.08  E-value=4.2e-06  Score=88.62  Aligned_cols=37  Identities=11%  Similarity=0.270  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .||+||||||+|+++|+.|++.+  .|++|+|||+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~--~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLS--ETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--SSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhC--cCCCEEEEECCCCc
Confidence            48999999999999999999852  37899999999865

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.05  E-value=3.1e-06  Score=86.11  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~   97 (514)
                      .+++||+|||||++||++|+.|++.    | ++|+|+|+++.++..
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~----g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQA----GFHDYTILERTDHVGGK   45 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT----TCCCEEEECSSSCSSTT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhC----CCCcEEEEECCCCCCCc
Confidence            3568999999999999999999996    8 899999999877543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.03  E-value=7.2e-06  Score=85.26  Aligned_cols=33  Identities=27%  Similarity=0.512  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc-CCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~~~~g~~V~viE~   90 (514)
                      .++||+||||||+|+++|+.|++ .    |++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~----G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLY----GKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHH----CCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhc----CCeEEEEec
Confidence            46899999999999999999999 8    899999994

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.02  E-value=2.4e-06  Score=89.41  Aligned_cols=42  Identities=17%  Similarity=0.367  Sum_probs=37.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSN   98 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~~   98 (514)
                      ++.+||+|||||++||++|+.|++.    | ++|+|+|+++.++.+.
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~----G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQN----GIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHT----TCCSEEEECSSSSSBTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCce
Confidence            3468999999999999999999996    8 9999999999886543

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.99  E-value=2.9e-05  Score=78.66  Aligned_cols=108  Identities=20%  Similarity=0.303  Sum_probs=81.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.                   +..   +             
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtvv~~~~~~l-------------------~~~---~-------------  183 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKL----GLSVTILEAGDELL-------------------VRV---L-------------  183 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS-------------------HHH---H-------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCccc-------------------hhh---c-------------
Confidence            46899999999999999999996    99999999988550                   000   0             


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+.+.+.+.+++.| ++++++++|++++.              
T Consensus       184 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  213 (410)
T 3ef6_A          184 -----------------------------------GRRIGAWLRGLLTELG-VQVELGTGVVGFSG--------------  213 (410)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHT-CEEECSCCEEEEEC--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEec--------------
Confidence                                               0234556666666667 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh--hhhhCCCc
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV--RELAGFKT  257 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v--R~~l~~~~  257 (514)
                            ++....|.+.+|+++.||+ |.|.|.....  -+.++...
T Consensus       214 ------~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (410)
T 3ef6_A          214 ------EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLAC  253 (410)
T ss_dssp             ------SSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             ------cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCcc
Confidence                  3345678889999999999 9999986653  34444443

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.99  E-value=5.7e-06  Score=85.92  Aligned_cols=42  Identities=24%  Similarity=0.407  Sum_probs=37.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      .++.+||+|||||++||++|+.|++.    |++|+|+|+.+.++..
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQKA----GYKVTVLEARTRPGGR   49 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSCTT
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEeccCCCCCc
Confidence            34568999999999999999999996    9999999999887654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.95  E-value=3.2e-05  Score=78.47  Aligned_cols=101  Identities=16%  Similarity=0.252  Sum_probs=78.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          .                            
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~l----------~----------------------------  189 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKF----GVNVTLLEALPRVL----------A----------------------------  189 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------T----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCchh----------h----------------------------
Confidence            46899999999999999999996    99999999987541          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                   .                   .....+.+.+.+.+++.| ++++++++|++++.              
T Consensus       190 -------------~-------------------~~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  222 (415)
T 3lxd_A          190 -------------R-------------------VAGEALSEFYQAEHRAHG-VDLRTGAAMDCIEG--------------  222 (415)
T ss_dssp             -------------T-------------------TSCHHHHHHHHHHHHHTT-CEEEETCCEEEEEE--------------
T ss_pred             -------------h-------------------hcCHHHHHHHHHHHHhCC-CEEEECCEEEEEEe--------------
Confidence                         0                   001335566777777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           +.+....|.+.+|+++.||+ |.|.|.....
T Consensus       223 -----~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          223 -----DGTKVTGVRMQDGSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             -----SSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred             -----cCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence                 12234478889999999999 9999987654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.94  E-value=2.1e-05  Score=80.78  Aligned_cols=99  Identities=12%  Similarity=0.240  Sum_probs=75.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +                            
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~----------------------------  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANF----GTKVTILEGAGEIL----------S----------------------------  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCccc----------c----------------------------
Confidence            46899999999999999999996    99999999987540          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                +               ...+...+.+.+++.| ++++++++|++++.              
T Consensus       208 --~----------------~---------------~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  239 (455)
T 1ebd_A          208 --G----------------F---------------EKQMAAIIKKRLKKKG-VEVVTNALAKGAEE--------------  239 (455)
T ss_dssp             --T----------------S---------------CHHHHHHHHHHHHHTT-CEEEESEEEEEEEE--------------
T ss_pred             --c----------------c---------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence              0                0               0134456667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeC---CCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS---DGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~g~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+.   ++.++.+|. |.|.|.....
T Consensus       240 ------~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          240 ------REDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ------ETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             ------eCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence                  3344666654   456799999 9999987654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.94  E-value=6.2e-06  Score=82.71  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ....+||+|||||++||++|+.|++.    |++|+|+|+++.++
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASS----GQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHC----CCceEEEeccCCCC
Confidence            44679999999999999999999996    99999999988765

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.93  E-value=6.5e-05  Score=75.85  Aligned_cols=109  Identities=24%  Similarity=0.331  Sum_probs=81.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++|+.+.+...                                     
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~~~-------------------------------------  180 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAK----GLEVDVVELAPRVMAR-------------------------------------  180 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTTTT-------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCCcchhh-------------------------------------
Confidence            35799999999999999999996    9999999988744000                                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                         .                              ....+.+.+.+.+++.| ++++++++|++++.              
T Consensus       181 ---~------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  212 (404)
T 3fg2_P          181 ---V------------------------------VTPEISSYFHDRHSGAG-IRMHYGVRATEIAA--------------  212 (404)
T ss_dssp             ---T------------------------------SCHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             ---c------------------------------cCHHHHHHHHHHHHhCC-cEEEECCEEEEEEe--------------
Confidence               0                              01235566777777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh--hhhhCCCc
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV--RELAGFKT  257 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v--R~~l~~~~  257 (514)
                           +.+....|.+.+|+++.||+ |.|.|.....  -+.++...
T Consensus       213 -----~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (404)
T 3fg2_P          213 -----EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPT  253 (404)
T ss_dssp             -----ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             -----cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCC
Confidence                 12234568899999999999 9999976543  34444443

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.92  E-value=3.3e-05  Score=79.89  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGL----GSETHLVIRGETVL----------R-----KFD--------------------  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T-----TSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCceEEEEeCCccc----------c-----ccC--------------------
Confidence            46899999999999999999996    99999999987541          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++..           + 
T Consensus       226 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~-----------~-  256 (479)
T 2hqm_A          226 ------------------------------------ECIQNTITDHYVKEG-INVHKLSKIVKVEKN-----------V-  256 (479)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEECSCCEEEEEEC-----------C-
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-eEEEeCCEEEEEEEc-----------C-
Confidence                                                112234555566666 999999999999750           0 


Q ss_pred             cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~v  249 (514)
                            ++..+.|.+.+| +++.||. |.|.|.....
T Consensus       257 ------~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          257 ------ETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             -------CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             ------CCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence                  112377888899 7899999 9999976654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.92  E-value=5.7e-06  Score=83.52  Aligned_cols=41  Identities=27%  Similarity=0.580  Sum_probs=35.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ...+||+|||||++||++|+.|++.   .|++|+|+|+++.++.
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~---~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQ---LDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHH---SCCCEEEECSSSSSSG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHh---CCCCEEEEeCCCCCCC
Confidence            3478999999999999999999994   2899999999987653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.91  E-value=4.6e-05  Score=78.77  Aligned_cols=102  Identities=12%  Similarity=0.292  Sum_probs=76.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+..         .      +.                    
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~---------~------~~--------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRL----GSKVTVVEFQPQIGA---------S------MD--------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSSS---------S------SC--------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHc----CCEEEEEEeCCcccc---------c------cC--------------------
Confidence            46899999999999999999996    999999999885510         0      00                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++..             
T Consensus       224 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~~-------------  253 (478)
T 1v59_A          224 ------------------------------------GEVAKATQKFLKKQG-LDFKLSTKVISAKRN-------------  253 (478)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEECSEEEEEEEEE-------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEEe-------------
Confidence                                                335566777777777 999999999999640             


Q ss_pred             cccccccCCeeEEEeC-----CCcEEEeeE-EEecCCCchhh
Q 010225          215 ATTLFTKGHLAKLDLS-----DGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~-----~g~~~~ad~-V~AdG~~S~vR  250 (514)
                           +.++.+.+.+.     ++.++.||. |.|.|....+.
T Consensus       254 -----~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          254 -----DDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             -----TTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             -----cCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence                 01244566654     356799999 99999876553

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.90  E-value=2.8e-05  Score=87.26  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+||+||||||+|+++|+.|++.    |++|+|||+++.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~----G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS----GARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC
Confidence            57999999999999999999996    9999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.90  E-value=4.9e-05  Score=78.35  Aligned_cols=99  Identities=17%  Similarity=0.403  Sum_probs=74.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          +.     +                     
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~~-----~---------------------  213 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARL----GAEVTVVEFAPRCA----------PT-----L---------------------  213 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------TT-----S---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHh----CCEEEEEecCCccc----------cc-----C---------------------
Confidence            46899999999999999999996    99999999987541          00     0                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHH-hcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM-QNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                                         ...+.+.+.+.+ ++.| ++++++++|++++.             
T Consensus       214 -----------------------------------d~~~~~~l~~~l~~~~g-v~i~~~~~v~~i~~-------------  244 (468)
T 2qae_A          214 -----------------------------------DEDVTNALVGALAKNEK-MKFMTSTKVVGGTN-------------  244 (468)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHTC-CEEECSCEEEEEEE-------------
T ss_pred             -----------------------------------CHHHHHHHHHHHhhcCC-cEEEeCCEEEEEEE-------------
Confidence                                               022445666777 6777 99999999999976             


Q ss_pred             ccccccccCCeeEEEeC--CC--cEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLS--DG--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~--~g--~~~~ad~-V~AdG~~S~v  249 (514)
                             +++.+.+.+.  +|  +++.||. |.|.|..+..
T Consensus       245 -------~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          245 -------NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             -------CSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             -------cCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence                   2334666665  66  5799999 9999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.87  E-value=6.3e-05  Score=78.22  Aligned_cols=99  Identities=15%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  221 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTEL----GVPVTVVASQDHVL----------P-----YE---------------------  221 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHT----TCCEEEECSSSSSS----------C-----CS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----cc---------------------
Confidence            46899999999999999999996    89999999987541          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++|+++++|++++.              
T Consensus       222 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------  251 (499)
T 1xdi_A          222 -----------------------------------DADAALVLEESFAERG-VRLFKNARAASVTR--------------  251 (499)
T ss_dssp             -----------------------------------SHHHHHHHHHHHHHTT-CEEETTCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                               0124455667777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+.+|+++.||. |.|.|..+..
T Consensus       252 ------~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          252 ------TGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ------CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             ------eCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                  3344778888888999999 9999987654

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.87  E-value=2e-05  Score=81.57  Aligned_cols=99  Identities=9%  Similarity=0.145  Sum_probs=76.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          ..     +                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~l----------~~-----~---------------------  224 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTL----GSRLDVVEMMDGLM----------QG-----A---------------------  224 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEECCccc----------cc-----c---------------------
Confidence            46899999999999999999996    99999999987541          00     0                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       225 -----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  254 (482)
T 1ojt_A          225 -----------------------------------DRDLVKVWQKQNEYRF-DNIMVNTKTVAVEP--------------  254 (482)
T ss_dssp             -----------------------------------CHHHHHHHHHHHGGGE-EEEECSCEEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhcC-CEEEECCEEEEEEE--------------
Confidence                                               0124455667777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCC----CcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSD----GTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~----g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+.+    |+++.||. |.|.|....+
T Consensus       255 ------~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          255 ------KEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ------ETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             ------cCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence                  33456677766    77899999 9999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.86  E-value=8.3e-05  Score=76.79  Aligned_cols=100  Identities=12%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .  +  .                      
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~--~--~----------------------  217 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRL----GADVTAVEFLGHVG----------G--V--G----------------------  217 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------C--S--S----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHc----CCEEEEEeccCccC----------C--c--c----------------------
Confidence            46899999999999999999996    99999999987541          0  0  0                      


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                         +               ...+.+.+.+.+++.| ++++++++|++++.              
T Consensus       218 -------------------~---------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  248 (474)
T 1zmd_A          218 -------------------I---------------DMEISKNFQRILQKQG-FKFKLNTKVTGATK--------------  248 (474)
T ss_dssp             -------------------C---------------CHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             -------------------c---------------CHHHHHHHHHHHHHCC-CEEEeCceEEEEEE--------------
Confidence                               0               1234456677777777 99999999999976              


Q ss_pred             cccccccCCe-eEEEe-----CCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHL-AKLDL-----SDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~-~~v~~-----~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            +++. +.+.+     .++.++.||. |.|.|.....
T Consensus       249 ------~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          249 ------KSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             ------CTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             ------cCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence                  2223 55653     4667899999 9999976554

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.86  E-value=6.6e-05  Score=78.07  Aligned_cols=100  Identities=12%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  215 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRL----GIDSYIFARGNRIL----------R-----KF---------------------  215 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSSSSC----------T-----TS---------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHc----CCeEEEEecCCccC----------c-----cc---------------------
Confidence            46899999999999999999996    99999999987540          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       216 -----------------------------------d~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  245 (500)
T 1onf_A          216 -----------------------------------DESVINVLENDMKKNN-INIVTFADVVEIKK--------------  245 (500)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             -----------------------------------chhhHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence                                               0123345666677777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcE-EEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTS-LYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~-~~ad~-V~AdG~~S~v  249 (514)
                           +.++.+.|.+.+|++ +.||. |.|.|.....
T Consensus       246 -----~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          246 -----VSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             -----SSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             -----cCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                 112347788889987 99999 9999987655

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.85  E-value=6.9e-05  Score=77.86  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=33.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+.+|||||||++|+++|..|++.    +++|+|||+++
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~----~~~VtLId~~~   75 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTK----KYNVSIISPRS   75 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTT----TCEEEEEESSS
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhC----CCcEEEECCCC
Confidence            34567899999999999999999985    89999999987

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.85  E-value=6.3e-05  Score=78.00  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=77.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.. ..|.+|+|+|+.+.+.          ..     +                     
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~-~~g~~Vtlv~~~~~~l----------~~-----~---------------------  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYK-ARGGQVDLAYRGDMIL----------RG-----F---------------------  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHS-CTTCEEEEEESSSSSS----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhc-cCcCeEEEEEcCCCcc----------cc-----c---------------------
Confidence            458999999999999999998830 0188999999987541          00     0                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.|.+.+++.| ++++++++|++++.              
T Consensus       230 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  259 (490)
T 1fec_A          230 -----------------------------------DSELRKQLTEQLRANG-INVRTHENPAKVTK--------------  259 (490)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-EEEEETCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0124456777777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           +.++.+.|.+.+|+++.||. |.|.|.....
T Consensus       260 -----~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          260 -----NADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----cCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence                 11234778888998899999 9999987654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.81  E-value=7.2e-06  Score=85.22  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|||+||||||+|+++|+.|++.    |++|+|||++.
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~----G~~V~liE~~~   41 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKH----TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----CSCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCC
Confidence            358999999999999999999997    99999999975

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.81  E-value=1.3e-05  Score=83.15  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~   96 (514)
                      +.+.+||+|||||++||++|+.|++.    | .+|+|+|+++.++.
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~----g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTEL----GYKNWHLYECNDTPGG   47 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHT----TCCSEEEEESSSSSSG
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHc----CCCCEEEEeCCCCCCC
Confidence            34578999999999999999999996    7 79999999987753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.80  E-value=0.00018  Score=73.81  Aligned_cols=99  Identities=15%  Similarity=0.223  Sum_probs=74.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .  +               .+        
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~--~---------------~~--------  189 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQ----NYNVNLIDGHERVL----------Y--K---------------YF--------  189 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSTT----------T--T---------------TS--------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc----CCEEEEEEcCCchh----------h--h---------------hh--------
Confidence            45899999999999999999996    99999999987541          0  0               00        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       190 -----------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  219 (452)
T 2cdu_A          190 -----------------------------------DKEFTDILAKDYEAHG-VNLVLGSKVAAFEE--------------  219 (452)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEEESSCEEEEEE--------------
T ss_pred             -----------------------------------hhhHHHHHHHHHHHCC-CEEEcCCeeEEEEc--------------
Confidence                                               0224556667777777 99999999999975              


Q ss_pred             cccccccCCeeE-EEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+. +.+ +|+++.||. |.|.|.....
T Consensus       220 ------~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          220 ------VDDEIITKTL-DGKEIKSDIAILCIGFRPNT  249 (452)
T ss_dssp             ------ETTEEEEEET-TSCEEEESEEEECCCEEECC
T ss_pred             ------CCCeEEEEEe-CCCEEECCEEEECcCCCCCH
Confidence                  234443 444 788899999 9999976554

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.80  E-value=1.3e-05  Score=79.88  Aligned_cols=36  Identities=31%  Similarity=0.600  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +||+|||||++|+++|+.|++.    |++|+|+|+++.++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~----g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIG   37 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG----TCCEEEECSSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCCC
Confidence            6999999999999999999996    99999999988665

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.79  E-value=4e-05  Score=79.06  Aligned_cols=99  Identities=14%  Similarity=0.301  Sum_probs=74.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          ..                  +        
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l----------~~------------------~--------  216 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRI----GSEVTVVEFASEIV----------PT------------------M--------  216 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------TT------------------S--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCccc----------cc------------------c--------
Confidence            46899999999999999999996    89999999987541          00                  0        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+.+.+.+.+++.| ++++++++|++++.              
T Consensus       217 -----------------------------------~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  246 (470)
T 1dxl_A          217 -----------------------------------DAEIRKQFQRSLEKQG-MKFKLKTKVVGVDT--------------  246 (470)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHSS-CCEECSEEEEEEEC--------------
T ss_pred             -----------------------------------cHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------
Confidence                                               0134455667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeC---CC--cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS---DG--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~g--~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+.   +|  .++.+|. |.|.|.....
T Consensus       247 ------~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          247 ------SGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             ------SSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             ------cCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence                  2234566654   44  5799999 9999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.79  E-value=0.00011  Score=75.92  Aligned_cols=109  Identities=20%  Similarity=0.289  Sum_probs=81.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.   .|.+|+++|+.+.+.          ...                          
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~---~g~~Vtlv~~~~~~l----------~~~--------------------------  199 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADM---WGIDTTVVELADQIM----------PGF--------------------------  199 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH---HCCEEEEECSSSSSS----------TTT--------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh---cCCcEEEEEccCccc----------ccc--------------------------
Confidence            46899999999999999999983   178999999887441          000                          


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                        ....+.+.|.+.+++.| ++++++++|++++.              
T Consensus       200 ----------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  230 (472)
T 3iwa_A          200 ----------------------------------TSKSLSQMLRHDLEKND-VVVHTGEKVVRLEG--------------  230 (472)
T ss_dssp             ----------------------------------SCHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             ----------------------------------cCHHHHHHHHHHHHhcC-CEEEeCCEEEEEEc--------------
Confidence                                              01235566777777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCCc
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFKT  257 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~~  257 (514)
                            .++.+.+.+.+|+++.||. |.|.|....  +-+.++...
T Consensus       231 ------~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  270 (472)
T 3iwa_A          231 ------ENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLEL  270 (472)
T ss_dssp             ------SSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCB
T ss_pred             ------cCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccC
Confidence                  3456778888998999999 999998654  334445443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.79  E-value=9.8e-05  Score=74.67  Aligned_cols=103  Identities=21%  Similarity=0.301  Sum_probs=77.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .         .                  
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~---------~------------------  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTA----GVHVSLVETQPRLM----------S---------R------------------  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T---------T------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCEEEEEEeCCccc----------c---------c------------------
Confidence            46899999999999999999996    99999999987441          0         0                  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               ...+...+.+.+++.| ++++++++|++++.              
T Consensus       184 --~~-------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  215 (408)
T 2gqw_A          184 --AA-------------------------------PATLADFVARYHAAQG-VDLRFERSVTGSVD--------------  215 (408)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CEEEESCCEEEEET--------------
T ss_pred             --cc-------------------------------CHHHHHHHHHHHHHcC-cEEEeCCEEEEEEC--------------
Confidence              00                               0224456667777777 99999999999852              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                              +  .|.+.+|+++.||. |.|.|....  +-+.++..
T Consensus       216 --------~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~  250 (408)
T 2gqw_A          216 --------G--VVLLDDGTRIAADMVVVGIGVLANDALARAAGLA  250 (408)
T ss_dssp             --------T--EEEETTSCEEECSEEEECSCEEECCHHHHHHTCC
T ss_pred             --------C--EEEECCCCEEEcCEEEECcCCCccHHHHHhCCCC
Confidence                    2  56778898999999 999997654  33344443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.78  E-value=4e-05  Score=78.77  Aligned_cols=97  Identities=18%  Similarity=0.254  Sum_probs=72.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +     .+.                    
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  211 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKL----GAQVSVVEARERIL----------P-----TYD--------------------  211 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence            46899999999999999999996    99999999987541          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       212 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  240 (458)
T 1lvl_A          212 ------------------------------------SELTAPVAESLKKLG-IALHLGHSVEGYEN--------------  240 (458)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEETTCEEEEEET--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEECCEEEEEEe--------------
Confidence                                                123344555666666 99999999999962              


Q ss_pred             cccccccCCeeEEEeCCC--cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g--~~~~ad~-V~AdG~~S~v  249 (514)
                              +.+.+...+|  .++.+|. |.|.|.....
T Consensus       241 --------~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          241 --------GCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             --------TEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             --------CCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                    2255554456  5799999 9999976654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.78  E-value=0.00012  Score=75.29  Aligned_cols=97  Identities=15%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .      +.                    
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------~~--------------------  215 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARL----GSKVTVLARNTLFF----------R------ED--------------------  215 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTTT----------T------SC--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCEEEEEEECCccC----------C------CC--------------------
Confidence            46899999999999999999996    89999999987541          0      00                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       216 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  244 (467)
T 1zk7_A          216 ------------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------  244 (467)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEETTCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------
Confidence                                                124456677777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            ++..+.|.++ +.++.||. |.|.|.++..
T Consensus       245 ------~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          245 ------MDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             ------ETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             ------eCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence                  3345667765 45799999 9999987764

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.78  E-value=1.9e-05  Score=79.29  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ++||+|||||++|+++|+.|++.    |++|+|+|+++.++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~----g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCcEEEEEecCCcC
Confidence            47999999999999999999996    99999999998775

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.77  E-value=0.00012  Score=75.79  Aligned_cols=99  Identities=15%  Similarity=0.279  Sum_probs=74.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                    
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~--------------------  225 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVEL----GKKVRMIERNDHIG----------T-----IY--------------------  225 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHT----TCEEEEECCGGGTT----------S-----SS--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeCCchh----------h-----cC--------------------
Confidence            356899999999999999999996    99999999987441          0     00                    


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                                          ...+.+.+.+.+++.| ++++++++|++++.             
T Consensus       226 ------------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~-------------  255 (480)
T 3cgb_A          226 ------------------------------------DGDMAEYIYKEADKHH-IEILTNENVKAFKG-------------  255 (480)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------
T ss_pred             ------------------------------------CHHHHHHHHHHHHHcC-cEEEcCCEEEEEEc-------------
Confidence                                                0234556777777777 99999999999975             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             ++....+.++ +.++.||. |.|.|.....
T Consensus       256 -------~~~v~~v~~~-~~~i~~D~vi~a~G~~p~~  284 (480)
T 3cgb_A          256 -------NERVEAVETD-KGTYKADLVLVSVGVKPNT  284 (480)
T ss_dssp             -------SSBEEEEEET-TEEEECSEEEECSCEEESC
T ss_pred             -------CCcEEEEEEC-CCEEEcCEEEECcCCCcCh
Confidence                   2233345554 45799999 9999976543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.77  E-value=0.00018  Score=73.68  Aligned_cols=99  Identities=18%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          .         .                  
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~---------~------------------  185 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKM----KKTVHVFESLENLL----------P---------K------------------  185 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T---------T------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCccc----------c---------c------------------
Confidence            46899999999999999999996    99999999987541          0         0                  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                +               -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       186 --~----------------~---------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  217 (452)
T 3oc4_A          186 --Y----------------F---------------DKEMVAEVQKSLEKQA-VIFHFEETVLGIEE--------------  217 (452)
T ss_dssp             --T----------------C---------------CHHHHHHHHHHHHTTT-EEEEETCCEEEEEE--------------
T ss_pred             --c----------------C---------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEc--------------
Confidence              0                0               0234566777777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+++| ++.||. |.|.|.....
T Consensus       218 ------~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~  246 (452)
T 3oc4_A          218 ------TANGIVLETSEQ-EISCDSGIFALNLHPQL  246 (452)
T ss_dssp             ------CSSCEEEEESSC-EEEESEEEECSCCBCCC
T ss_pred             ------cCCeEEEEECCC-EEEeCEEEECcCCCCCh
Confidence                  334557778777 899999 9999976543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.76  E-value=0.00025  Score=68.76  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|++|+-+|..|++.    |.+|+++++.+.+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  180 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRDGF  180 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeCCcc
Confidence            45899999999999999999996    8999999987643

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.76  E-value=8.4e-05  Score=74.02  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .      +.                     
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------~~---------------------  182 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA----GYHVKLIHRGAMFL----------G------LD---------------------  182 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT----TCEEEEECSSSCCT----------T------CC---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCCeec----------c------CC---------------------
Confidence            5899999999999999999996    99999999987541          0      00                     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                         ..+.+.+.+.+++.| ++++++++|++++.               
T Consensus       183 -----------------------------------~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~---------------  211 (367)
T 1xhc_A          183 -----------------------------------EELSNMIKDMLEETG-VKFFLNSELLEANE---------------  211 (367)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTT-EEEECSCCEEEECS---------------
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe---------------
Confidence                                               134456667777777 99999999999853               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             .  .|.+++|+ +.+|. |.|.|.....
T Consensus       212 -------~--~v~~~~g~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          212 -------E--GVLTNSGF-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             -------S--EEEETTEE-EECSCEEEECCEEECC
T ss_pred             -------e--EEEECCCE-EEcCEEEECcCCCcCH
Confidence                   2  35667887 99999 9999976554

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.75  E-value=0.00011  Score=74.78  Aligned_cols=110  Identities=16%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .  +                         
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~----G~~Vtlv~~~~~~l----------~--~-------------------------  187 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKA----NMHVTLLDTAARVL----------E--R-------------------------  187 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTT----------T--T-------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCEEEEEEeCCccc----------c--c-------------------------
Confidence            46899999999999999999996    99999999877430          0  0                         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                               -...+.+.+.+.+++.| ++++++++|++++.         +  + 
T Consensus       188 --~-------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~---------~--~-  221 (431)
T 1q1r_A          188 --V-------------------------------TAPPVSAFYEHLHREAG-VDIRTGTQVCGFEM---------S--T-  221 (431)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHHHT-CEEECSCCEEEEEE---------C--T-
T ss_pred             --h-------------------------------hhHHHHHHHHHHHHhCC-eEEEeCCEEEEEEe---------c--c-
Confidence              0                               00124455666666667 99999999999964         0  0 


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                           +++....|.+.+|+++.||. |.|.|....  +-+.++..
T Consensus       222 -----~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          222 -----DQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             -----TTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             -----CCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCC
Confidence                 01233468888999999999 999997654  33344443

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.75  E-value=0.00021  Score=74.01  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .  +               .+       
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~--~---------------~~-------  234 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRK----GKEVVLIDVVDTCL----------A--G---------------YY-------  234 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------T--T---------------TS-------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC----CCeEEEEEcccchh----------h--h---------------HH-------
Confidence            346899999999999999999996    99999999987541          0  0               00       


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                                          -..+.+.+.+.+++.| ++++++++|++++.             
T Consensus       235 ------------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~-------------  264 (490)
T 2bc0_A          235 ------------------------------------DRDLTDLMAKNMEEHG-IQLAFGETVKEVAG-------------  264 (490)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHTTT-CEEEETCCEEEEEC-------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHhCC-eEEEeCCEEEEEEc-------------
Confidence                                                0224556777777777 99999999999964             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                             ++....+.+ +|+++.||. |.|.|....+
T Consensus       265 -------~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~  293 (490)
T 2bc0_A          265 -------NGKVEKIIT-DKNEYDVDMVILAVGFRPNT  293 (490)
T ss_dssp             -------SSSCCEEEE-SSCEEECSEEEECCCEEECC
T ss_pred             -------CCcEEEEEE-CCcEEECCEEEECCCCCcCh
Confidence                   222223554 677899999 9999976543

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.74  E-value=2.4e-05  Score=79.86  Aligned_cols=42  Identities=31%  Similarity=0.478  Sum_probs=37.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ++..+||+|||||++|+++|+.|++.    |++|+|+|+++.++..
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~----g~~v~~~e~~~~~gg~   44 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVN----GKKVLHMDRNPYYGGE   44 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCcccc
Confidence            34578999999999999999999996    9999999999877644

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.73  E-value=0.00014  Score=75.41  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  214 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRL----GVIVKVFGRSGSVA----------N-----LQD--------------------  214 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHT----TCEEEEECCTTCCT----------T-----CCC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEECCccc----------c-----cCC--------------------
Confidence            46899999999999999999997    99999999988541          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++ . ++++++++|++++.              
T Consensus       215 ------------------------------------~~~~~~l~~~l~~-~-V~i~~~~~v~~i~~--------------  242 (492)
T 3ic9_A          215 ------------------------------------EEMKRYAEKTFNE-E-FYFDAKARVISTIE--------------  242 (492)
T ss_dssp             ------------------------------------HHHHHHHHHHHHT-T-SEEETTCEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHhh-C-cEEEECCEEEEEEE--------------
Confidence                                                0344555666655 3 89999999999976              


Q ss_pred             cccccccCCeeEEEeC--CC--cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS--DG--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g--~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.  +|  .++.||. |.|.|.....
T Consensus       243 ------~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~  276 (492)
T 3ic9_A          243 ------KEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV  276 (492)
T ss_dssp             ------CSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred             ------cCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence                  3345667664  67  5799999 9999986543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.72  E-value=4.1e-05  Score=78.23  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|+||||||+|+++|..|++.+  ...+|+|||+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g--~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHC--SSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCC--CCCcEEEEeCCCCC
Confidence            6999999999999999999862  13679999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.72  E-value=0.0002  Score=75.59  Aligned_cols=118  Identities=16%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          ..     +                     
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~-----~---------------------  190 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHL----GIKTTLLELADQVM----------TP-----V---------------------  190 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSC----------TT-----S---------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCcEEEEEcCCccc----------hh-----c---------------------
Confidence            34899999999999999999996    99999999987541          00     0                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+...+.+.+++.| ++++++++|++++...............
T Consensus       191 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~~~~~~~~~  234 (565)
T 3ntd_A          191 -----------------------------------DREMAGFAHQAIRDQG-VDLRLGTALSEVSYQVQTHVASDAAGED  234 (565)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEEETCCEEEEEEECCCCCCCGGGTCC
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCeEEEEeccccccccccccccc
Confidence                                               0123455666677777 9999999999997521111111000000


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                      . .....++.+.+.+.+|+++.||. |.|.|.....
T Consensus       235 ~-~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          235 T-AHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             C-TTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             c-ccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence            0 00002356778888999999999 9999976543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.71  E-value=0.00015  Score=75.29  Aligned_cols=99  Identities=21%  Similarity=0.297  Sum_probs=75.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  238 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARL----GAKVTVVEFLDTIL----------G-----GMD--------------------  238 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------S-----SSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecccccc----------c-----cCC--------------------
Confidence            46899999999999999999996    89999999887541          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       239 ------------------------------------~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------  267 (491)
T 3urh_A          239 ------------------------------------GEVAKQLQRMLTKQG-IDFKLGAKVTGAVK--------------  267 (491)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-CEEEECCeEEEEEE--------------
Confidence                                                234455666777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCC---C--cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSD---G--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~---g--~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.+   |  .++.+|. |.|.|.....
T Consensus       268 ------~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          268 ------SGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             ------ETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             ------eCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence                  33556666542   4  5799999 9999976544

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.71  E-value=2e-05  Score=84.03  Aligned_cols=39  Identities=33%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...+||+|||||++|+++|+.|++.    |++|+|||+.+..+
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~----G~~V~liE~~~~~g   82 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGA----GYKVAMFDIGEIDS   82 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCCS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhC----CCcEEEEeccCCCC
Confidence            3579999999999999999999996    99999999988664

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.71  E-value=2.2e-05  Score=81.57  Aligned_cols=40  Identities=28%  Similarity=0.491  Sum_probs=35.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ...+||+|||||++||++|+.|++.    |++|+|+|+.+.++.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~----g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGA----GHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH----TCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEECCCCCCC
Confidence            3468999999999999999999996    999999999987754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.69  E-value=0.0001  Score=75.90  Aligned_cols=99  Identities=19%  Similarity=0.295  Sum_probs=73.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          +     .+.                    
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNY----GVDVTIVEFLPRAL----------P-----NED--------------------  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence            46899999999999999999996    99999999987540          0     000                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       212 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  240 (464)
T 2a8x_A          212 ------------------------------------ADVSKEIEKQFKKLG-VTILTATKVESIAD--------------  240 (464)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEECSCEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHcC-CEEEeCcEEEEEEE--------------
Confidence                                                123344555666666 99999999999975              


Q ss_pred             cccccccCCeeEEEeC-CC--cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLS-DG--TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g--~~~~ad~-V~AdG~~S~v  249 (514)
                            +++.+.+.+. +|  +++.||. |.|.|.....
T Consensus       241 ------~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          241 ------GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             ------CSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             ------cCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence                  2334666664 56  5799999 9999976543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.69  E-value=0.00012  Score=76.04  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.. ..|.+|+|+|+.+.+.          .                  .+        
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~-~~g~~Vtlv~~~~~~l----------~------------------~~--------  233 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYK-PPGGKVTLCYRNNLIL----------R------------------GF--------  233 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHC-CTTCEEEEEESSSSSC----------T------------------TS--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhC-CCCCeEEEEEcCCccc----------c------------------cc--------
Confidence            458999999999999999998840 0188999999987540          0                  00        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       234 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  263 (495)
T 2wpf_A          234 -----------------------------------DETIREEVTKQLTANG-IEIMTNENPAKVSL--------------  263 (495)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123455666677777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           +.++.+.|.+.+|+++.||. |.|.|....+
T Consensus       264 -----~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          264 -----NTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             -----cCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence                 11234778888998999999 9999986654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.69  E-value=0.00024  Score=73.62  Aligned_cols=111  Identities=17%  Similarity=0.259  Sum_probs=78.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.+.+.|.+|+++++.+.+.          .  +                         
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~----------~--~-------------------------  222 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM----------G--K-------------------------  222 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT----------T--T-------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccc----------c--c-------------------------
Confidence            35799999999999999998762100168899999776320          0  0                         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               ...+...+.+.+++.| |+++++++|++++.              
T Consensus       223 --~l-------------------------------~~~~~~~~~~~l~~~G-V~v~~~~~V~~i~~--------------  254 (493)
T 1m6i_A          223 --IL-------------------------------PEYLSNWTMEKVRREG-VKVMPNAIVQSVGV--------------  254 (493)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHTTT-CEEECSCCEEEEEE--------------
T ss_pred             --cC-------------------------------CHHHHHHHHHHHHhcC-CEEEeCCEEEEEEe--------------
Confidence              00                               0234455667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                            .++.+.|.+.+|+++.||+ |.|.|....  +-+.++..
T Consensus       255 ------~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          255 ------SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLE  293 (493)
T ss_dssp             ------ETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCC
T ss_pred             ------cCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCc
Confidence                  3355678889999999999 999997654  33444544

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.68  E-value=2.6e-05  Score=80.02  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~----G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK----GYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            3568999999999999999999996    9999999998755

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.66  E-value=0.00018  Score=74.35  Aligned_cols=99  Identities=17%  Similarity=0.291  Sum_probs=75.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.          .     .+                     
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  219 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARL----GAEVTVLEAMDKFL----------P-----AV---------------------  219 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC----------c-----cc---------------------
Confidence            46899999999999999999996    99999999987430          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+...+.+.+++.| ++++++++|++++.              
T Consensus       220 -----------------------------------~~~~~~~l~~~l~~~G-v~v~~~~~v~~i~~--------------  249 (476)
T 3lad_A          220 -----------------------------------DEQVAKEAQKILTKQG-LKILLGARVTGTEV--------------  249 (476)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-EEEEETCEEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence                                               0124455666777777 99999999999986              


Q ss_pred             cccccccCCeeEEEeCCC---cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDG---TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.+.+.++   .++.+|. |.|.|.....
T Consensus       250 ------~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          250 ------KNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             ------CSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             ------cCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence                  334566666654   5799999 9999976544

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.65  E-value=2.6e-05  Score=81.18  Aligned_cols=34  Identities=38%  Similarity=0.589  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++||+|||||++|+++|..|++.    |++|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH----NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCC
Confidence            58999999999999999999996    99999999985

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.60  E-value=3.7e-05  Score=80.48  Aligned_cols=38  Identities=29%  Similarity=0.469  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+||+||||||++|+.+|..|++.   .|++|+|||++...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~---~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED---PDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS---TTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC---CCCeEEEEcCCCCC
Confidence            479999999999999999999985   38999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.59  E-value=0.00041  Score=67.71  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++++.+.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~----g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDT----ARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEcCCcc
Confidence            45899999999999999999996    8999999988743

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.55  E-value=4.2e-05  Score=80.51  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...|||||||||++|+++|+.|++.    |++|+|+|++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~----g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA----GKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCCC
Confidence            3579999999999999999999996    999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.54  E-value=0.0004  Score=71.83  Aligned_cols=99  Identities=14%  Similarity=0.089  Sum_probs=72.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+++.....          .      +.                    
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~l~----------~------~d--------------------  226 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGL----GYEPTVMVRSIVLR----------G------FD--------------------  226 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCSST----------T------SC--------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCEEEEEeCCCCCc----------c------cC--------------------
Confidence            35799999999999999999997    99999999853220          0      00                    


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       227 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  255 (483)
T 3dgh_A          227 ------------------------------------QQMAELVAASMEERG-IPFLRKTVPLSVEK--------------  255 (483)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CCEEETEEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                                124455667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCc-----EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGT-----SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-----~~~ad~-V~AdG~~S~v  249 (514)
                           +.++.+.|.+.++.     ++.+|. |.|.|.....
T Consensus       256 -----~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~  291 (483)
T 3dgh_A          256 -----QDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV  291 (483)
T ss_dssp             -----CTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECC
T ss_pred             -----cCCCcEEEEEecCCCCceeEEEcCEEEECcccccCc
Confidence                 12234566665543     799999 9999975443

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.52  E-value=0.00028  Score=72.53  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=76.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.          .         .         +        
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vt~v~~~~~~l----------~---------~---------~--------  209 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGL----GVKTTLIYRGKEIL----------S---------R---------F--------  209 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T---------T---------S--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c---------c---------c--------
Confidence            46899999999999999999996    89999999887440          0         0         0        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       210 -----------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  239 (463)
T 4dna_A          210 -----------------------------------DQDMRRGLHAAMEEKG-IRILCEDIIQSVSA--------------  239 (463)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------------
Confidence                                               0124466677777777 99999999999976              


Q ss_pred             cccccccCCeeEEE-eCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLD-LSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~-~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                           +.++.+.|. +.+|+ +.||. |.|.|.....
T Consensus       240 -----~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          240 -----DADGRRVATTMKHGE-IVADQVMLALGRMPNT  270 (463)
T ss_dssp             -----CTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred             -----cCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence                 112336788 88888 99999 9999986544

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.50  E-value=4.3e-05  Score=78.57  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .++||+||||||+|+++|..|++.    |++|+|||++
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH----TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEccC
Confidence            458999999999999999999996    9999999994

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.49  E-value=0.0004  Score=67.69  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~----g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKY----GSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCcc
Confidence            46799999999999999999996    8999999988754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.48  E-value=0.00033  Score=74.39  Aligned_cols=97  Identities=15%  Similarity=0.363  Sum_probs=74.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          .     .+                     
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  226 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRER----GIEVTLVEMANQVM----------P-----PI---------------------  226 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCccc----------c-----cC---------------------
Confidence            45899999999999999999996    99999999887541          0     00                     


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         ...+...+.+.+++.| ++++++++|++++.              
T Consensus       227 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  256 (588)
T 3ics_A          227 -----------------------------------DYEMAAYVHEHMKNHD-VELVFEDGVDALEE--------------  256 (588)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEG--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCeEEEEec--------------
Confidence                                               0123455666677777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v  249 (514)
                            .++  .|.+.+|+++.||. |.|.|.....
T Consensus       257 ------~~~--~v~~~~g~~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          257 ------NGA--VVRLKSGSVIQTDMLILAIGVQPES  284 (588)
T ss_dssp             ------GGT--EEEETTSCEEECSEEEECSCEEECC
T ss_pred             ------CCC--EEEECCCCEEEcCEEEEccCCCCCh
Confidence                  222  46678898999999 9999976543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.46  E-value=0.00071  Score=66.94  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||.+|+-+|..|++.    |.+|+++++.+...                  .+.       +          
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~~------------------~~~-------~----------  206 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKN----GSDIALYTSTTGLN------------------DPD-------A----------  206 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT----TCEEEEECC--------------------------------------------
T ss_pred             CCEEEEECCCcCHHHHHHHHHhc----CCeEEEEecCCCCC------------------CCC-------C----------
Confidence            34899999999999999999996    89999999987441                  000       0          


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                +...    .               -...+.+.+.+.+++.|+++++.+++|++++.              
T Consensus       207 ----------d~~~----~---------------~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~--------------  243 (369)
T 3d1c_A          207 ----------DPSV----R---------------LSPYTRQRLGNVIKQGARIEMNVHYTVKDIDF--------------  243 (369)
T ss_dssp             -----------CTT----S---------------CCHHHHHHHHHHHHTTCCEEEECSCCEEEEEE--------------
T ss_pred             ----------CCCc----c---------------CCHHHHHHHHHHHhhCCcEEEecCcEEEEEEe--------------
Confidence                      0000    0               01234455556666553399999999999964              


Q ss_pred             cccccccCCeeEEEeCCCcEEE-eeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLY-AKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~-ad~-V~AdG~~S~v  249 (514)
                            .++.+.|.+.+|+++. +|. |.|.|.....
T Consensus       244 ------~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          244 ------NNGQYHISFDSGQSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             ------ETTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred             ------cCCceEEEecCCeEeccCCceEEeeccCCcc
Confidence                  2355678888888665 599 9999975443

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.45  E-value=9.6e-05  Score=80.49  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~----G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMES----GYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            4568999999999999999999996    9999999998755

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.44  E-value=0.00031  Score=71.66  Aligned_cols=93  Identities=15%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .                            
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~ll----------~----------------------------  184 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYER----GLHPTLIHRSDKIN----------K----------------------------  184 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----TCEEEEEESSSCCS----------T----------------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhc----CCcceeeeeecccc----------c----------------------------
Confidence            34799999999999999999996    99999999987441          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ..      +                         ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       185 --~~------d-------------------------~~~~~~~~~~l~~~g-V~i~~~~~v~~~~~--------------  216 (437)
T 4eqs_A          185 --LM------D-------------------------ADMNQPILDELDKRE-IPYRLNEEINAING--------------  216 (437)
T ss_dssp             --TS------C-------------------------GGGGHHHHHHHHHTT-CCEEESCCEEEEET--------------
T ss_pred             --cc------c-------------------------chhHHHHHHHhhccc-eEEEeccEEEEecC--------------
Confidence              00      0                         001234555666667 99999999998853              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                                ..+.+++|+++.||+ |.|.|...
T Consensus       217 ----------~~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          217 ----------NEITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             ----------TEEEETTSCEEECSEEEECCCEEE
T ss_pred             ----------CeeeecCCeEEeeeeEEEEeceec
Confidence                      246778999999999 99999654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.43  E-value=8.8e-05  Score=78.18  Aligned_cols=37  Identities=30%  Similarity=0.558  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...||+||||||.||+++|..|++.   .+.+|+|||++.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~---~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN---PNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS---TTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC---CCCcEEEEecCC
Confidence            4579999999999999999999985   389999999988

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.42  E-value=0.00011  Score=79.23  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ...+||+|||||++||++|+.|++.    |++|+|+|+.+.++.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~----g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT----TCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence            4568999999999999999999996    999999999887653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.42  E-value=0.00028  Score=72.42  Aligned_cols=145  Identities=11%  Similarity=0.062  Sum_probs=79.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+|||||.+|+=+|..|++..  .|.+|+++++.+.+...      ...........+...+.+..+..  .....
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~--~~~~Vt~v~r~~~~~p~------~~~~~~~~~~~p~~~~~~~~l~~--~~~~~  295 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSY--PSVQADMILRASALKPA------DDSPFVNEVFAPKFTDLIYSREH--AERER  295 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHC--TTEEEEEECSSSSCCBC------CCCHHHHGGGSHHHHHHHHHSCH--HHHHH
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcC--CCCeEEEEEeCCCCcCc------cCCccchhccChhHHHHHhcCCH--HHHHH
Confidence            3568999999999999999999841  27899999998854110      00000001122333333333321  11110


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      ......      ........            ..+-......++.+.+....+++++.+++|++++.             
T Consensus       296 ~~~~~~------~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~-------------  344 (463)
T 3s5w_A          296 LLREYH------NTNYSVVD------------TDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATA-------------  344 (463)
T ss_dssp             HHHHTG------GGTSSCBC------------HHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEE-------------
T ss_pred             HHHHhh------ccCCCcCC------------HHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEe-------------
Confidence            000000      00000000            00112233344444454434599999999999976             


Q ss_pred             ccccccccCCeeEEEeC---CCc--EEEeeE-EEecCCC
Q 010225          214 SATTLFTKGHLAKLDLS---DGT--SLYAKL-VGADGGK  246 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~---~g~--~~~ad~-V~AdG~~  246 (514)
                             .++.+.|.+.   +|+  ++.+|+ |.|+|..
T Consensus       345 -------~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~  376 (463)
T 3s5w_A          345 -------TAQGIELALRDAGSGELSVETYDAVILATGYE  376 (463)
T ss_dssp             -------ETTEEEEEEEETTTCCEEEEEESEEEECCCEE
T ss_pred             -------cCCEEEEEEEEcCCCCeEEEECCEEEEeeCCC
Confidence                   4456777765   665  499999 9999964

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.42  E-value=0.00015  Score=78.19  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+||+||||||+|+++|..|++.    |++|+|||+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAAR----GHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCC
Confidence            4568999999999999999999996    9999999998765

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.42  E-value=0.0001  Score=77.76  Aligned_cols=38  Identities=32%  Similarity=0.636  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...||+||||||.||+++|..|++.+   +.+|+|||++..
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~---~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENP---NVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTST---TSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCC---CCcEEEEecCCC
Confidence            35699999999999999999999972   489999999876

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.39  E-value=0.00052  Score=70.83  Aligned_cols=100  Identities=9%  Similarity=0.052  Sum_probs=73.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+++.+.+.          .                  .+        
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------------------~~--------  226 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSAL----GSKTSLMIRHDKVL----------R------------------SF--------  226 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T------------------TS--------
T ss_pred             CccEEEECCCHHHHHHHHHHHHc----CCeEEEEEeCCccc----------c------------------cc--------
Confidence            46899999999999999999997    99999999887540          0                  00        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| ++++++++|++++..             
T Consensus       227 -----------------------------------d~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-------------  257 (478)
T 3dk9_A          227 -----------------------------------DSMISTNCTEELENAG-VEVLKFSQVKEVKKT-------------  257 (478)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEETTEEEEEEEEC-------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc-------------
Confidence                                               0113455666667777 999999999999760             


Q ss_pred             cccccccCC-eeEEEeCC---C----cEEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGH-LAKLDLSD---G----TSLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~-~~~v~~~~---g----~~~~ad~-V~AdG~~S~v  249 (514)
                            .++ .+.+.+.+   |    .++.+|. |.|.|.....
T Consensus       258 ------~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          258 ------LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             ------SSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             ------CCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence                  112 46677765   2    5799999 9999975443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.39  E-value=0.00044  Score=68.38  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||+|++|+-+|..|++.    |.+|+++++.+.
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~  197 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKN----AASVTLVHRGHE  197 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTT----SSEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCC
Confidence            35899999999999999999996    899999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.39  E-value=0.0011  Score=63.76  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANI----CKKVYLIHRRDGF  178 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEeeCCcc
Confidence            46899999999999999999996    8999999987643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.39  E-value=8.4e-05  Score=79.15  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=32.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ...+||+||||||+|+++|..|++.    |++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~----g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY----GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC----CCeEEEEecc
Confidence            4569999999999999999999996    9999999984

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.39  E-value=0.0013  Score=63.84  Aligned_cols=36  Identities=25%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKF----ADEVTVIHRRDTL  187 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTT----CSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEeCCCcC
Confidence            35899999999999999999996    8999999987643

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.38  E-value=0.00014  Score=79.98  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ...++|+|||||++||++|+.|++.    |++|+|||+.+.++.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~----g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCcCCC
Confidence            3467999999999999999999996    999999999987753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.29  E-value=0.00079  Score=69.65  Aligned_cols=99  Identities=14%  Similarity=0.109  Sum_probs=71.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+++.....          .                   +        
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~l~----------~-------------------~--------  223 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGI----GLDTTVMMRSIPLR----------G-------------------F--------  223 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCSST----------T-------------------S--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCceEEEEcCcccc----------c-------------------C--------
Confidence            35799999999999999999996    99999999864220          0                   0        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.+++.| +++++++++++++.              
T Consensus       224 -----------------------------------d~~~~~~l~~~l~~~g-v~~~~~~~v~~i~~--------------  253 (488)
T 3dgz_A          224 -----------------------------------DQQMSSLVTEHMESHG-TQFLKGCVPSHIKK--------------  253 (488)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEEETEEEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                               0124455667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEeCC---Cc--EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSD---GT--SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~---g~--~~~ad~-V~AdG~~S~v  249 (514)
                           ..++.+.+.+.+   |+  ++.+|. |.|.|.....
T Consensus       254 -----~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~  289 (488)
T 3dgz_A          254 -----LPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET  289 (488)
T ss_dssp             -----CTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred             -----cCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence                 122345555543   54  478999 9999975443

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.0012  Score=67.46  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=74.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          ..                           
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~~---------------------------  186 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQ----GKNVTMIVRGERVL----------RR---------------------------  186 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------TT---------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEEcCCccc----------hh---------------------------
Confidence            35899999999999999999996    99999999987541          00                           


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -..+...+.+.+++.  ++++++++|++++.              
T Consensus       187 --~~-------------------------------~~~~~~~l~~~l~~~--v~i~~~~~v~~i~~--------------  217 (449)
T 3kd9_A          187 --SF-------------------------------DKEVTDILEEKLKKH--VNLRLQEITMKIEG--------------  217 (449)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHTTT--SEEEESCCEEEEEC--------------
T ss_pred             --hc-------------------------------CHHHHHHHHHHHHhC--cEEEeCCeEEEEec--------------
Confidence              00                               023455666666654  89999999999975              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK  256 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~  256 (514)
                            .+ .+...+.++.++.||. |.|.|....  +-+.++..
T Consensus       218 ------~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~  255 (449)
T 3kd9_A          218 ------EE-RVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVR  255 (449)
T ss_dssp             ------SS-SCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCC
T ss_pred             ------cC-cEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCcc
Confidence                  22 2333345777899999 999997643  33344443

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.28  E-value=0.0001  Score=77.25  Aligned_cols=37  Identities=30%  Similarity=0.609  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||+||||||.+|+.+|..|++     |.+|+|||++...
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-----g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-----KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-----TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-----CCcEEEEecCCCc
Confidence            356999999999999999999998     6899999999654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.27  E-value=0.0014  Score=63.41  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++++.+.
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~----g~~V~~i~~~~~  189 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEY----VKNVTIIEYMPK  189 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----BSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhh----CCcEEEEEcCCc
Confidence            35799999999999999999996    899999998763

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.23  E-value=0.0015  Score=62.95  Aligned_cols=35  Identities=34%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||+|++|+-+|..|++.    |.+|+++++.+.
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT----BSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh----CCEEEEEEeCcc
Confidence            35899999999999999999996    899999998774

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.22  E-value=0.00019  Score=73.74  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~   94 (514)
                      ..+||+||||||+|+.+|..|++.    |  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhc----CCCCCEEEEeCCCcC
Confidence            357999999999999999999996    6  999999998855

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.20  E-value=0.00015  Score=76.32  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=33.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .||+||||||.+|+.+|..|++.   .+.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~---~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED---PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS---TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC---cCCcEEEEecCCcc
Confidence            58999999999999999999985   38999999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.15  E-value=0.00023  Score=80.44  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~   94 (514)
                      ..+||+||||||+|+++|+.|++.    |+ +|+|||+.+.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~----G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL----GYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT----TCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc----CCCcEEEEeCCCCC
Confidence            357999999999999999999997    88 79999998755

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.14  E-value=0.0002  Score=73.43  Aligned_cols=41  Identities=24%  Similarity=0.358  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhcc-CC--CCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLAS-MP--LTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~--~~~g~~V~viE~~~~~   94 (514)
                      .++||+||||||+|+++|..|++ ..  ...|++|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            35799999999999999999988 41  0017999999998754

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.11  E-value=0.0024  Score=62.15  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhc----CCeEEEEecCCcC
Confidence            46899999999999999999996    8999999988743

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.10  E-value=0.0002  Score=76.65  Aligned_cols=36  Identities=33%  Similarity=0.719  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC--------cEEEEEcCCC-CC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH--------LSVAIIDSNP-AL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g--------~~V~viE~~~-~~   94 (514)
                      ..+|+|||||++||++|+.|++.    |        ++|+|||+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~----g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL----AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH----HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CcccccCCCceEEEEeccCccc
Confidence            47899999999999999999986    7        9999999998 66

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.10  E-value=0.0024  Score=61.38  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~----g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANI----CSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTT----SSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEeCCCC
Confidence            46899999999999999999996    8999999988743

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.10  E-value=0.00037  Score=73.81  Aligned_cols=39  Identities=26%  Similarity=0.522  Sum_probs=34.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|++|||+|++|+++|..|++.   .|++|+|||++...
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~---~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTEN---PKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTS---TTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhC---CCCcEEEEecCCcc
Confidence            4579999999999999999999993   38999999998754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.10  E-value=0.0026  Score=65.29  Aligned_cols=97  Identities=21%  Similarity=0.317  Sum_probs=71.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          ..     .            +        
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~-----~------------~--------  212 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLM----GVQTHIIEMLDRAL----------IT-----L------------E--------  212 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------TT-----S------------C--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEEeCCcCC----------CC-----C------------C--------
Confidence            46899999999999999999996    99999999987541          00     0            0        


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                                                         -..+.+.+.+.++    ++++.+++|++++.              
T Consensus       213 -----------------------------------d~~~~~~l~~~l~----v~i~~~~~v~~i~~--------------  239 (466)
T 3l8k_A          213 -----------------------------------DQDIVNTLLSILK----LNIKFNSPVTEVKK--------------  239 (466)
T ss_dssp             -----------------------------------CHHHHHHHHHHHC----CCEECSCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHhcCE----EEEEECCEEEEEEE--------------
Confidence                                               0123344444442    88999999999976              


Q ss_pred             cccccccC-CeeEEEeC--CCc--EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKG-HLAKLDLS--DGT--SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~-~~~~v~~~--~g~--~~~ad~-V~AdG~~S~v  249 (514)
                            .+ +.+.+.+.  +|+  ++.+|. |.|.|.....
T Consensus       240 ------~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          240 ------IKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             ------EETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             ------cCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence                  33 56677777  666  799999 9999976554

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.09  E-value=0.0019  Score=62.25  Aligned_cols=36  Identities=31%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~----g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSY----STKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh----CCeEEEEEeCCCC
Confidence            46899999999999999999996    8999999988754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.03  E-value=0.00032  Score=72.88  Aligned_cols=37  Identities=14%  Similarity=0.170  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+||+|||+|++|+++|+.|++.    |++|+|||++...
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~----~~~v~~~e~~~~~   40 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA----GVQTLMLEMGQLW   40 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC
Confidence            468999999999999999999996    9999999998743

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.02  E-value=0.0005  Score=72.16  Aligned_cols=38  Identities=37%  Similarity=0.628  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|++|||+|++|+++|..|++.   .|.+|+|||++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~---~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED---PAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS---TTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC---CCCCEEEEecCCcC
Confidence            579999999999999999999995   38999999998755

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.01  E-value=0.00042  Score=72.03  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|++|||+|++|+++|+.|++.    |.+|+|+|++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~----~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQA----GIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEECCCC
Confidence            4569999999999999999999995    999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.00  E-value=0.004  Score=65.13  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|||+|.+|+-+|..|++.    |.+|+|+++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~----~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPE----VEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT----CSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhh----CCEEEEEECCCC
Confidence            346899999999999999999996    899999999886

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.00  E-value=0.0011  Score=68.67  Aligned_cols=54  Identities=28%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc----EEEeeE-EEecCCC
Q 010225          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT----SLYAKL-VGADGGK  246 (514)
Q Consensus       172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~ad~-V~AdG~~  246 (514)
                      .+.+.+.+.+++.| |+|+++++|++++.                    ++....+...||+    ++.||+ |-|.|..
T Consensus       273 ~~~~~~~~~L~~~G-V~v~~~~~v~~v~~--------------------~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          273 KLSSYAQSHLENTS-IKVHLRTAVAKVEE--------------------KQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHHHHHTT-CEEETTEEEEEECS--------------------SEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHhcc-eeeecCceEEEEeC--------------------CceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            35566777777777 99999999999964                    2223344556664    599999 9999953

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.97  E-value=0.0026  Score=62.05  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~l~~~~~~  189 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRF----ARSVTLVHRRDE  189 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT----CSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh----CCeEEEEEcCCc
Confidence            46899999999999999999996    899999998763

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.95  E-value=0.0038  Score=65.37  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|||+|.+|+-+|..|++.    +.+|+|+++.+.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~----~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAET----AKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTT----BSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhh----CCEEEEEEcCCC
Confidence            346899999999999999999996    899999999985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.95  E-value=0.0019  Score=62.56  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~----~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPI----AKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT----BSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhh----CCeEEEEEecCcC
Confidence            45899999999999999999996    8999999987743

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.94  E-value=0.0022  Score=61.13  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=29.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|+.|+-+|..|++.    | +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~----g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDW----G-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGT----S-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhc----C-cEEEEECCC
Confidence            46899999999999999999996    8 999998765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=96.87  E-value=0.0037  Score=65.10  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGI----GLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEecc
Confidence            34699999999999999999997    8999999985

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.59  E-value=0.0018  Score=68.49  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=36.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ++++|||+|||+|+.|..+|..|++.    |.+|++|||++..+
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~----g~~vl~id~~~~~g   44 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRS----GQRVLHVDSRSYYG   44 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhC----CCEEEEEcCCCccc
Confidence            45689999999999999999999996    99999999999876

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.48  E-value=0.012  Score=62.26  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .+|+|||||..|+-+|..|++.    |.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASL----GGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCEEEEEECC
Confidence            4799999999999999999997    8999999987

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.46  E-value=0.011  Score=61.53  Aligned_cols=35  Identities=34%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||.+|+-+|..|++.    |.+|+++++.+.
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~----g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH----BSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhh----CCEEEEEEeCcc
Confidence            35899999999999999999996    899999998764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.24  E-value=0.013  Score=60.02  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhc--------------------cCCCCCCc-EEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLA--------------------SMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~--------------------~~~~~~g~-~V~viE~~~~~   94 (514)
                      ..+|+|||||.+|+-+|..|+                    +.    |. +|+|++++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~----g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS----RVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC----CCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhC----CCcEEEEEEcCChH
Confidence            468999999999999999998                    44    76 79999998754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.05  E-value=0.025  Score=59.14  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|||+|.+|+-+|..|++.    +.+|+||++.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~----~~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQ----AEQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHH----BSEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhh----CCEEEEEECCCC
Confidence            346899999999999999999996    899999999885

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.88  E-value=0.019  Score=58.83  Aligned_cols=35  Identities=14%  Similarity=0.049  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||||.+|+=+|..|++.    |.+|+|+++.+.
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~----g~~V~li~~~~~  231 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKY----GAKKLISCYRTA  231 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHT----TCSEEEEECSSC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHh----CCeEEEEEECCC
Confidence            46899999999999999999997    899999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.85  E-value=0.013  Score=59.59  Aligned_cols=34  Identities=21%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~   92 (514)
                      ..+|+|||||.+|+=+|..|++.    |.+ |+|+++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~----~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPV----AKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT----SCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHH----hCCcEEEEeCCC
Confidence            46899999999999999999997    788 99999876

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.80  E-value=0.017  Score=59.03  Aligned_cols=40  Identities=28%  Similarity=0.398  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCC---------------C-CCC-cEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMP---------------L-TKH-LSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~---------------~-~~g-~~V~viE~~~~~   94 (514)
                      ..+|+|||+|.+|+-+|..|++.+               + ..| .+|+|++++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            468999999999999999998720               0 014 489999998744

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.79  E-value=0.01  Score=49.76  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+-.|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~----g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLAS----DIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHT----TCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            455799999999999999999996    999999999873

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.75  E-value=0.026  Score=60.67  Aligned_cols=48  Identities=13%  Similarity=-0.025  Sum_probs=35.9

Q ss_pred             HHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC--cEEEeeE-EEecCCC
Q 010225          175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKL-VGADGGK  246 (514)
Q Consensus       175 ~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~-V~AdG~~  246 (514)
                      ..+.+.+++.| |+++.+++|++++.                      +.+.+. .+|  +++.+|. |.|.|..
T Consensus       577 ~~~~~~l~~~G-V~v~~~~~v~~i~~----------------------~~v~~~-~~G~~~~i~~D~Vi~a~G~~  627 (671)
T 1ps9_A          577 WIHRTTLLSRG-VKMIPGVSYQKIDD----------------------DGLHVV-INGETQVLAVDNVVICAGQE  627 (671)
T ss_dssp             HHHHHHHHHTT-CEEECSCEEEEEET----------------------TEEEEE-ETTEEEEECCSEEEECCCEE
T ss_pred             HHHHHHHHhcC-CEEEeCcEEEEEeC----------------------CeEEEe-cCCeEEEEeCCEEEECCCcc
Confidence            44556666666 99999999999863                      345554 567  5799999 9999964

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.61  E-value=0.03  Score=60.76  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             CccEEEEC--CCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVG--GGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVG--gG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||  ||..|+-+|..|++.    |.+|+|+++.+ +
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~----G~~Vtlv~~~~-l  564 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATA----GHEVTIVSGVH-L  564 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHT----TCEEEEEESSC-T
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHc----CCEEEEEeccc-c
Confidence            45899999  999999999999996    89999999987 5

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.54  E-value=0.012  Score=50.24  Aligned_cols=37  Identities=24%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....|+|||+|..|..+|..|.+.    |++|+++|+++..
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~----g~~V~vid~~~~~   54 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSS----GHSVVVVDKNEYA   54 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHHH
Confidence            346899999999999999999996    8999999987643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.29  E-value=0.024  Score=63.58  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||+|+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~----G~~Vtvv~~~~~~  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAAT----GGVVAVIDARSSI  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGG----TCCSEEEESCSSC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHc----CCcEEEEECCCcc
Confidence            5799999999999999999997    8899999998743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.25  E-value=0.016  Score=48.08  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|..|..+|..|.+.    |++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~----g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK----GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            4799999999999999999996    89999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.12  E-value=0.022  Score=45.66  Aligned_cols=34  Identities=29%  Similarity=0.574  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~   92 (514)
                      ...|+|+|+|..|..++..|.+.    | ++|+++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~----g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS----SNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC----SSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC----CCceEEEEeCCH
Confidence            35799999999999999999996    8 9999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.11  E-value=0.02  Score=54.93  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||..|+=+|..|++.    |.+|+|+|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKF----ADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT----CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCEEEEEeccccc
Confidence            4899999999999999999997    9999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.10  E-value=0.018  Score=48.14  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|+|+|..|..+|..|.+.    |++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~----g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA----GKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            4799999999999999999996    99999999876

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.03  E-value=0.022  Score=48.42  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +..|+|+|+|..|..+|..|.+.    |++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~----g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR----GQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT----TCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC
Confidence            35799999999999999999996    99999999974

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.00  E-value=0.022  Score=54.64  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||+|..|..+|..|++.    |++|+++|+++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAAT----GHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            4699999999999999999996    999999998763

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.98  E-value=0.014  Score=58.19  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~----g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS----GTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCeEEEEEcCCcc
Confidence            5799999999999999999996    9999999999865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.68  E-value=0.028  Score=54.68  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      +.++..+|+|||||-.|.++|..|++.    |+ +|+++|.+..
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~----g~~~V~L~D~~~~   44 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALR----ELADVVLYDVVKG   44 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECChh
Confidence            344457899999999999999999986    77 9999998863

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.54  E-value=0.021  Score=54.98  Aligned_cols=35  Identities=37%  Similarity=0.506  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||+|..|...|..++.+    |++|+|+|..+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~----G~~V~l~D~~~~   40 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASG----GFRVKLYDIEPR   40 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT----TCCEEEECSCHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            45799999999999999999997    999999998763

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.51  E-value=0.033  Score=54.77  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +.+...+|+|||+|-.|.++|..|++.    |++|+++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~----G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARK----GQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTT----TCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            334456899999999999999999996    99999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=94.48  E-value=0.058  Score=52.41  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|.+|+-+|..|++.    | +|+++++..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~----~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTV----A-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----S-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhh----C-CEEEEECCC
Confidence            46899999999999999999996    7 699999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=94.37  E-value=0.17  Score=50.44  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=36.8

Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                      ...+.+.+++.| |+++++++|++++.                      +.  |.+++|+++.+|+ |.|.|..
T Consensus       221 ~~~~~~~l~~~g-V~~~~~~~v~~i~~----------------------~~--v~~~~g~~~~~D~vi~a~G~~  269 (409)
T 3h8l_A          221 RKAVASIYNQLG-IKLVHNFKIKEIRE----------------------HE--IVDEKGNTIPADITILLPPYT  269 (409)
T ss_dssp             HHHHHHHHHHHT-CEEECSCCEEEECS----------------------SE--EEETTSCEEECSEEEEECCEE
T ss_pred             HHHHHHHHHHCC-CEEEcCCceEEECC----------------------Ce--EEECCCCEEeeeEEEECCCCC
Confidence            344555555556 99999999999954                      22  6778999999999 9999953

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.30  E-value=0.046  Score=52.31  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+....
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~----G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKY----GSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHh----CCeeeeecccccc
Confidence            35799999999999999999997    9999999987643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.90  E-value=0.046  Score=52.88  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|..|.++|..|++.    |++|++++|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~----g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT----GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT----TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCh
Confidence            5799999999999999999996    89999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.81  E-value=0.043  Score=45.62  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|+|+|..|..+|..|.+.    |++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~----g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRM----GHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            3699999999999999999996    89999999865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.68  E-value=0.063  Score=50.90  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||+|..|...|..|++.    |++|+++|+++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~----G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH----GFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence            4799999999999999999996    999999998763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.52  E-value=0.06  Score=54.89  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .++|+|+|+|-.|..+|..|...    |++|+|+|+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~----~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGE----NNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCST----TEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            45799999999999999999986    999999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=93.47  E-value=0.031  Score=58.36  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||+|.+|+-+|..|++.    |.+|+++++.+..
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~----~~~vtv~~r~~~~  221 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQ----AAELFVFQRTPHF  221 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----BSEEEEEESSCCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhc----CceEEEEEcCCcc
Confidence            46899999999999999999996    8899999987643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=93.43  E-value=0.21  Score=56.29  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      -+|+|||||..|+=+|..|.+.    |. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~----G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRC----GARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT----TCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHc----CCCEEEEEEecC
Confidence            3899999999999999999997    75 899999876

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.38  E-value=0.052  Score=49.20  Aligned_cols=33  Identities=30%  Similarity=0.443  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~----g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR----KYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT----TCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            699999999999999999996    999999998763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.34  E-value=0.062  Score=51.31  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..+|.|||.|-.|..+|..|++.    |++|+++++++..
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~----G~~V~~~dr~~~~   50 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEW----PGGVTVYDIRIEA   50 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTS----TTCEEEECSSTTT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCHHH
Confidence            356899999999999999999996    9999999988743

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.13  E-value=0.07  Score=46.76  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCC-CcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTK-HLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-g~~V~viE~~~   92 (514)
                      ...|+|||+|..|..+|..|.+    . |++|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~----~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA----RYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH----HHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh----ccCCeEEEEECCH
Confidence            4579999999999999999988    5 78999999876

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=93.08  E-value=0.055  Score=52.09  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|..|++.    |++|++++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~----g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS----GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT----SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCeEEEEEcCc
Confidence            4799999999999999999996    89999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.87  E-value=0.085  Score=50.88  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|-.|.++|..|++.    |+ +|+++|++..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~----g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKD----NLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCceEEEEeCCch
Confidence            45799999999999999999996    87 9999998763

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.83  E-value=0.098  Score=51.85  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|||+|++|+.+|..|...    |.+|+++|+...
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l----Ga~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL----GAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            346899999999999999999997    899999998873

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.78  E-value=0.1  Score=50.58  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||||-.|.++|..|++.    |+ +|+++|.+..
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~----g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQK----DLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCHH
Confidence            35899999999999999999996    77 9999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.71  E-value=0.11  Score=47.26  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||||.+|...|..|.+.    |.+|+|+++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~----GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE----GAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG----CCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCC
Confidence            456899999999999999999997    99999998754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=92.63  E-value=0.15  Score=51.42  Aligned_cols=48  Identities=8%  Similarity=-0.013  Sum_probs=33.7

Q ss_pred             HHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe--CC-----CcEEEeeE-EEecCC
Q 010225          175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SD-----GTSLYAKL-VGADGG  245 (514)
Q Consensus       175 ~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-----g~~~~ad~-V~AdG~  245 (514)
                      ..+.+.+++.| |+++++++|++++.                      +.+.+..  .+     +.++.+|+ |.|.|.
T Consensus       212 ~~~~~~l~~~g-I~~~~~~~v~~v~~----------------------~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          212 GILTKGLKEEG-IEAYTNCKVTKVED----------------------NKMYVTQVDEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             HHHHHHHHHTT-CEEECSEEEEEEET----------------------TEEEEEEECTTSCEEEEEEEECSEEEEECCE
T ss_pred             HHHHHHHHHCC-CEEEcCCEEEEEEC----------------------CeEEEEecccCCccccceEEEEeEEEEcCCC
Confidence            44556666666 99999999999964                      3343332  23     45799999 999884

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.63  E-value=0.11  Score=46.69  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||+|-.|.++|..|++.    |++|+++++++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~----g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA----GHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT----TCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            45799999999999999999996    899999998763

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.63  E-value=0.1  Score=49.32  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||+|..|.++|..|++.    |++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ----GHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhC----CCCEEEEEcCcc
Confidence            699999999999999999996    899999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.45  E-value=0.1  Score=50.21  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|..|++.    |+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~----g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQR----GIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCh
Confidence            5799999999999999999996    88  999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.43  E-value=0.12  Score=49.71  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...+|+|||+|..|.++|+.|++.    |+ .|+++|..+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~----g~~~v~l~D~~~   42 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQK----ELADVVLVDIPQ   42 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeccc
Confidence            446899999999999999999996    88 999999873

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.34  E-value=0.071  Score=50.04  Aligned_cols=35  Identities=17%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||||.+|+..|..|.+.    |.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~----Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPT----GCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG----TCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhC----CCEEEEEcCCC
Confidence            346799999999999999999997    99999999754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.28  E-value=0.11  Score=50.80  Aligned_cols=33  Identities=36%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|-.|..+|..|++.    |++|+++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~----g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK----GQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            5899999999999999999996    89999999865

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.21  E-value=0.13  Score=49.33  Aligned_cols=43  Identities=16%  Similarity=0.100  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 010225          440 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAA  482 (514)
Q Consensus       440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  482 (514)
                      .+.++.+++-|......+....-..++-..-+.|....+...+
T Consensus       247 sSM~qD~~~gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~li  289 (307)
T 3ego_A          247 SSMLVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSI  289 (307)
T ss_dssp             CHHHHHHHHTCCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             chHHHHHHcCCcccHHHhhhHHHHHHHHcCCCCcHHHHHHHHH
Confidence            5788889999988888888888888888887777766655443

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.19  E-value=0.1  Score=50.66  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      .+|+|||+|-.|.++|..|++.    |++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~----g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA----GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT----TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCEEEEEECh
Confidence            4799999999999999999996    8999999974

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.16  E-value=0.13  Score=50.52  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|-.|.++|..|++.    |++|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~----G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK----CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT----EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            799999999999999999996    99999999865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.14  E-value=0.12  Score=49.52  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|..|.++|..|++.    |++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG----GNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhC----CCcEEEEECCH
Confidence            4799999999999999999996    89999999765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.11  E-value=0.12  Score=52.97  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..++|+|||+|-.|+.+|..|++.    |++|+++|+++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~----G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI----GHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            357899999999999999999996    99999999875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.10  E-value=0.12  Score=52.48  Aligned_cols=33  Identities=39%  Similarity=0.578  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|-.|+.+|..|++.    |++|+++|+++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~----G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL----GANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc----CCEEEEEECCH
Confidence            4799999999999999999996    99999999876

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.10  E-value=0.15  Score=49.28  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|-.|.++|..|+..    |+ +|+++|.+..
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~----g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK----NLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCHH
Confidence            35799999999999999999996    77 8999998763

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=91.94  E-value=0.073  Score=50.74  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|..|++.    |++|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~----g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS----LPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH----CTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHC----CCeEEEEEecc
Confidence            4799999999999999999996    89999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.91  E-value=0.1  Score=43.77  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||+|..|.++|..|.+.    |++|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~----g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP----QYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCH
Confidence            45799999999999999999985    88899999875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=91.81  E-value=1  Score=42.67  Aligned_cols=33  Identities=3%  Similarity=0.045  Sum_probs=25.4

Q ss_pred             ccEEEECCCH-HHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~-aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+++|||||. +++-+|..+.+.    |.+|+|+++.+
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~----~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNW----STDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTT----CSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhC----CceEEEEeccc
Confidence            4678888775 557888888885    88999998765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.78  E-value=0.18  Score=51.03  Aligned_cols=33  Identities=27%  Similarity=0.494  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|..|...|..|++.    |++|+++|+++
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a----G~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA----GIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCeEEEEECcH
Confidence            5799999999999999999997    99999999887

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=91.68  E-value=0.11  Score=50.95  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|||+|.+|+.+|..|...    |.+|+++|+...
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l----Ga~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL----GAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            346899999999999999999997    899999998873

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.64  E-value=0.16  Score=48.67  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||.|-.|..+|..|++.    |++|+++++.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~----G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKN----GFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            35799999999999999999996    999999998764

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=91.62  E-value=0.15  Score=49.57  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .++.+|.|||+|-.|.++|..|++.    |++|+++++.+
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~----G~~V~~~~r~~   47 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHEN----GEEVILWARRK   47 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCH
Confidence            3567899999999999999999996    99999999865

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.60  E-value=0.17  Score=48.01  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|.|||+|..|...|..|+ +    |++|+++|+.+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a----G~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S----KHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T----TSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c----CCEEEEEECCH
Confidence            4578999999999999999999 8    99999999876

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=91.52  E-value=0.11  Score=49.77  Aligned_cols=32  Identities=34%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCC-----C-cEEEEEcC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTK-----H-LSVAIIDS   90 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-----g-~~V~viE~   90 (514)
                      +.+|.|||+|..|.++|..|++    .     | ++|+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~----~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLAL----RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH----HHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHh----CccccCCCCCEEEEEc
Confidence            3589999999999999999998    4     7 89999987

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.33  E-value=0.21  Score=50.90  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|..|..+|..|++.    |++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~----G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV----GISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            4799999999999999999996    99999999876

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.17  E-value=0.17  Score=48.37  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|..|+..    |+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~----g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR----GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCH
Confidence            699999999999999999996    78  899999875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.14  E-value=0.19  Score=48.20  Aligned_cols=35  Identities=17%  Similarity=0.393  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||+|..|..+|..|++.    |++|+++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~----g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM----GHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC----CCEEEEEeCCHH
Confidence            46799999999999999999986    899999998763

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.14  E-value=0.19  Score=50.85  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|.|||.|-.|+.+|..|++.    |++|+++++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~----G~~V~~~D~~~~k   43 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDF----GHEVVCVDKDARK   43 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCSTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCHHH
Confidence            357899999999999999999996    9999999998753

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.06  E-value=0.18  Score=51.27  Aligned_cols=34  Identities=32%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|.|||.|.+|+++|..|++.    |++|++.|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~----G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL----GAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT----TCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEeCCc
Confidence            45899999999999999999996    99999999876

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.02  E-value=0.15  Score=51.69  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|||.|++|+++|..|++.    |++|+++|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~----G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLAR----GVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTT----TCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhC----CCEEEEEECCCCc
Confidence            4699999999999999999885    9999999987654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.95  E-value=0.2  Score=47.91  Aligned_cols=34  Identities=38%  Similarity=0.439  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|.|||.|-.|..+|..|++.    |++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA----GLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            45799999999999999999996    99999999876

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=90.95  E-value=0.15  Score=53.15  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.+++|||||..|+=+|..+++.    |.+|+|+++....
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~l----G~~VTii~~~~~L  258 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSL----GYDVTVAVRSIVL  258 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH----TCCEEEEESSCSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhc----CCeEEEecccccc
Confidence            46899999999999999999998    9999999986544

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.79  E-value=0.22  Score=47.83  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|+|||+|-.|.++|..|++.+  .|++|+++|++..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~--~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQ--LARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCChh
Confidence            6999999999999999999842  1789999999763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.74  E-value=0.21  Score=48.05  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~   93 (514)
                      ++.+|+|||+|-+|.++|+.|+..    |+  .|.++|.+..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~----~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALR----QTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT----TCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChH
Confidence            346899999999999999999996    66  8999998753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.73  E-value=0.21  Score=48.99  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=31.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....+|.|||.|-.|..+|..|++.    |++|+++++.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~----G~~V~v~dr~~   55 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKG----GHECVVYDLNV   55 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            3456899999999999999999996    99999999876

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.73  E-value=0.22  Score=45.95  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|.|||+|-.|.++|..|++.    |++|+++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~----G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADL----GHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCEEEEEeCChh
Confidence            356899999999999999999996    999999998763

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.73  E-value=0.19  Score=48.34  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|-.|.++|..|++.    |++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~----G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARA----GHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHT----TCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC----CCeEEEE-EcH
Confidence            46799999999999999999996    8999999 654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.62  E-value=0.25  Score=47.66  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|-.|.++|..|+..    |+ +|+++|.+..
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~----~~~~v~L~Di~~~   42 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLK----ELGDVVLFDIAEG   42 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCch
Confidence            45899999999999999999996    67 9999998763

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=90.51  E-value=0.85  Score=46.86  Aligned_cols=39  Identities=21%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|||+|-+|.-+|..|++..  .+.+|+++=|.+..
T Consensus       245 ~gKrV~VVG~G~SA~ei~~~L~~~~--~~~~v~~~~R~~~~  283 (501)
T 4b63_A          245 KPYNIAVLGSGQSAAEIFHDLQKRY--PNSRTTLIMRDSAM  283 (501)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHS--TTCEEEEECSSSSC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcC--CCceEEEEeCCCcc
Confidence            3457999999999999999997631  26789999887643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=90.49  E-value=0.22  Score=49.69  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...|+|||+|.+|+.+|..|...    |.+|+++|+...
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~----Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL----GAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            45899999999999999999987    899999998763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.45  E-value=0.25  Score=47.39  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      .+|+|||+|-.|..+|..|+..    |+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~----g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK----ELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCCeEEEEeCCc
Confidence            4799999999999999999986    65 899999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.45  E-value=0.22  Score=47.15  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||.|-.|..+|..|++.    |++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA----GCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            4699999999999999999996    999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.44  E-value=0.21  Score=48.18  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=30.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ...+|+|||+|..|.++|+.|+..    |+  +++++|.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~----~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ----GITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCceEEEEecch
Confidence            346899999999999999999985    66  899999865

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.42  E-value=0.18  Score=46.70  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ..+|+|||+|-.|..+|..|++.    |+ +++|+|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~----Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA----GVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH----TCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc----CCCeEEEEcCCC
Confidence            35799999999999999999997    87 899999886

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.38  E-value=0.2  Score=50.13  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +..|+|||.|..|..+|..|.+.    |++|++||+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~----g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS----GVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            34699999999999999999996    999999999864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.37  E-value=0.18  Score=48.49  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...+|.|||.|-.|..+|..|++.    |+ +|+++++.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~----G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQA----GAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHH----SCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHC----CCCeEEEEcCCC
Confidence            346899999999999999999996    89 999999863

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.14  E-value=0.24  Score=47.61  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      ..+|.|||.|-.|.++|..|++.    | ++|+++++.+.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~----G~~~V~~~dr~~~   59 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGR----NAARLAAYDLRFN   59 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCSEEEEECGGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHc----CCCeEEEEeCCCc
Confidence            35799999999999999999996    9 99999998863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.14  E-value=0.26  Score=48.79  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|+|+|.+|+.+|..|...    |.+|+++|+.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~----Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL----GAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            356899999999999999999987    889999998763

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.12  E-value=0.3  Score=46.89  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ..+|.|||.|..|.++|..|++.    |+  +|+++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~----G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS----GFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC----CCCCEEEEEECCH
Confidence            46899999999999999999996    88  999999876

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=90.03  E-value=0.24  Score=50.71  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||+|..|...|..|++.    |++|+++|+++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a----G~~V~l~D~~~e   39 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH----GHQVLLYDISAE   39 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCeEEEEECCHH
Confidence            4799999999999999999996    999999998763

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.01  E-value=0.24  Score=50.48  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|-.|+.+|..|++.   .|+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~---~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADA---PCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHS---TTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh---CCCCeEEEEECChh
Confidence            35799999999999999999994   189 9999999875

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.97  E-value=0.32  Score=46.48  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|.|||.|-.|..+|..|++.    |++|+++++.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~----G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQ----GKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            346799999999999999999996    99999998876

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=89.88  E-value=0.089  Score=48.02  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=29.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      ...+|.|||.|..|.++|..|++.    |++|+++++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~----G~~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSV----GHYVTVLHA   37 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHT----TCEEEECSS
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHC----CCEEEEecC
Confidence            345899999999999999999996    999999886

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.87  E-value=0.33  Score=46.77  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|..|.++|..|+..    |+ +|.++|.+..
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~----~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK----QLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCceEEEEeCChH
Confidence            35799999999999999999986    66 9999998763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.86  E-value=0.23  Score=48.79  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      -.+.+|+|+|||.+|..+|..|...    |. +|+++|++-
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~----Ga~~I~v~D~~G  222 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAA----GATKVTVVDKFG  222 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHH----TCCEEEEEETTE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHc----CCCeEEEEECCC
Confidence            3467899999999999999999997    77 999999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=89.86  E-value=0.28  Score=49.25  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||.|-+||.+|..|++.    |++|+.+|-++
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~----G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL----GHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC----CCcEEEEECCH
Confidence            45899999999999999999986    99999999875

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.84  E-value=0.43  Score=46.09  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHH-HHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMA-LACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~-~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||.|.+|++ +|..|.+.    |++|++.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~----G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEA----GFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHT----TCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhC----CCEEEEEcCCCC
Confidence            47999999999996 88888885    999999998763

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.83  E-value=0.22  Score=47.33  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|..|..+|..|++.    |++|.++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA----GYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            4799999999999999999996    89999999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.79  E-value=0.25  Score=47.61  Aligned_cols=35  Identities=17%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|.|||.|-.|..+|..|++.    |++|+++++.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA----GYALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC----CCeEEEEcCCH
Confidence            345899999999999999999996    99999999876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=89.78  E-value=0.27  Score=50.99  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~----G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT----GRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCcc
Confidence            6899999999999999999996    9999999998855

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.75  E-value=0.21  Score=50.44  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|||+|-.|+.+|..|++.    |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~----G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR----GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            699999999999999999996    99999999875

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.71  E-value=0.27  Score=49.01  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      .+|+|||+|-.|.++|..|++.   .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~---~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASR---DGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS---TTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCEEEEEeC
Confidence            4799999999999999999872   2899999983

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.68  E-value=0.19  Score=45.86  Aligned_cols=34  Identities=9%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...|+|||+|..|..+|..|.+.    |+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~----g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS----EV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS----EE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhC----Ce-EEEEECCHH
Confidence            45799999999999999999986    89 999998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.57  E-value=0.27  Score=48.29  Aligned_cols=33  Identities=33%  Similarity=0.461  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|+|+|.+|++++..|+..    |.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~----Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL----GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            5899999999999999999997    88999999876

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=89.50  E-value=0.33  Score=48.67  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|||.|-.|+.+|..|++     |++|+++|+++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-----G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-----NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-----CCeEEEEecCHH
Confidence            3589999999999999999997     899999998763

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.47  E-value=0.3  Score=46.97  Aligned_cols=35  Identities=29%  Similarity=0.540  Sum_probs=29.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +..+|+|||+|..|.++|+.|+..    |+  .|.++|.+.
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~----~~~~ev~l~Di~~   41 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQ----GIADEIVLIDANE   41 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC----CCCCEEEEEeCCc
Confidence            346899999999999999999885    54  799999865

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.33  E-value=0.28  Score=47.29  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC----cEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH----LSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g----~~V~viE~~~   92 (514)
                      ..+|.|||+|-.|.++|..|.+.    |    ++|+++++..
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~----G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAA----GVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHT----TSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCCCcceEEEECCCc
Confidence            45799999999999999999996    7    7999999876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=89.32  E-value=0.29  Score=44.07  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|..|++.    |++|++++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~----g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS----GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            4799999999999999999996    89999999875

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=89.26  E-value=0.26  Score=47.01  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+|+|||||-.|..+|+.|+..    |+  .|.|+|.+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~----g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK----GIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEcCCc
Confidence            5799999999999999999885    77  899999876

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.21  E-value=0.43  Score=45.38  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             ccEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.||| +|-.|.++|..|++.    |++|+++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~----G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS----GYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT----TCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC----CCeEEEEECCc
Confidence            4699999 999999999999996    89999998765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=89.16  E-value=0.3  Score=47.00  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +..+|+|||+|-+|.++|+.|+..    |+  .+.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~----~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQ----SIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----CSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCh
Confidence            446899999999999999999985    54  799999764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=89.14  E-value=0.24  Score=47.91  Aligned_cols=30  Identities=30%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      +|.|||+|-.|.++|..|++.    |++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~----g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN----GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH----CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC----CCeEEEEEc
Confidence            599999999999999999996    899999998

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=89.12  E-value=0.21  Score=48.74  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-------cEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-------LSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-------~~V~viE~~~~   93 (514)
                      .+|+|||+|-.|.++|..|++.    |       ++|+++++++.
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~----g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN----AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH----HHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCcccCCCCeEEEEEcChh
Confidence            5799999999999999999996    8       89999998874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=88.90  E-value=0.29  Score=46.56  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|.|||+|-.|...|..|++.    |++|+++++.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKE----GVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            45799999999999999999986    89999999865

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=88.52  E-value=0.3  Score=47.06  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|..|++.    |+  +|+++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~----g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK----GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCeEEEEeCCh
Confidence            699999999999999999986    88  999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.39  E-value=0.41  Score=47.14  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|+|..|+.+|..|+..    |.+|+++++.+
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~----Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGM----GAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            36799999999999999999987    89999999865

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.37  E-value=0.4  Score=44.96  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|-.|.++|..|.+.    |++|+++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR----GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            599999999999999999996    89999998765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=88.35  E-value=0.19  Score=45.52  Aligned_cols=33  Identities=27%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEE-EcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAI-IDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~v-iE~~~   92 (514)
                      .+|.|||+|-.|.++|..|++.    |++|++ +++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~----g~~V~~v~~r~~   57 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA----QIPAIIANSRGP   57 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT----TCCEEEECTTCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEECCCH
Confidence            5799999999999999999996    899998 88765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=88.35  E-value=0.37  Score=49.45  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +..+|.|||.|..|..+|..|++.    |++|+++++.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~----G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADH----GFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            456899999999999999999996    999999998763

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=88.34  E-value=0.38  Score=49.15  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+.+|.|||.|..|.++|..|++.    |++|+++++.+
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~----G~~V~v~~r~~   48 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESR----GYTVSIFNRSR   48 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTT----TCCEEEECSSH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhC----CCeEEEEeCCH
Confidence            356899999999999999999996    99999999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.30  E-value=0.46  Score=42.44  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             cEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+||| +|-.|..+|..|++.    |++|++++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~----g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL----GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT----TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            599999 999999999999996    89999999865

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.28  E-value=0.48  Score=44.69  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+ |-.|.++|..|++.    |++|+++++.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~----g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS----AHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS----SSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            47999999 99999999999996    89999999765

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=88.26  E-value=0.35  Score=44.90  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC----cEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH----LSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g----~~V~viE~~~   92 (514)
                      .+|.|||+|-.|.++|..|++.    |    ++|+++++.+
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~----g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA----NIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH----TSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCCCCCeEEEEeCCc
Confidence            4799999999999999999986    7    7899999876

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=88.18  E-value=0.33  Score=46.10  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|+.|++.    |+  +|+++|.++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~----~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN----LDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----SCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCeEEEEECCh
Confidence            699999999999999999986    66  899999876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=88.04  E-value=0.42  Score=48.91  Aligned_cols=36  Identities=17%  Similarity=0.484  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGL----GVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc----CCeEEEEECCCcc
Confidence            46899999999999999999997    8999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.03  E-value=0.44  Score=47.03  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||+|.+|+.+|..|+..    |.+|+++++..
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~----Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM----GATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            46799999999999999999987    89999999865

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=88.03  E-value=0.36  Score=47.29  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ..+.+|+|+|||-+|..+|..|...    |. +|+|+|+.-
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~----G~~~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDL----GVKNVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHH----TCCEEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCC
Confidence            3567899999999999999999987    77 899999873

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=88.02  E-value=0.45  Score=46.20  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|.|||.|..|.++|..|++.    |++|+++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~----G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA----NHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT----TCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            45799999999999999999996    89999999776

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.86  E-value=0.43  Score=48.69  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||.|-.|..+|..|++.    |++|+++++.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~----G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            35799999999999999999996    999999998763

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=87.72  E-value=0.25  Score=46.70  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||.|-.|..+|..|++.    |++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~----G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA----GFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH----TCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            699999999999999999996    999999998764

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=87.69  E-value=0.49  Score=47.15  Aligned_cols=31  Identities=39%  Similarity=0.637  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|||+|-.|+.+|..|++     |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-----G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-----QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-----TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-----CCEEEEEECCH
Confidence            69999999999999999998     78999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=87.62  E-value=8.8  Score=40.73  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh
Q 010225          393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  432 (514)
Q Consensus       393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~  432 (514)
                      +|+.+.|++.+...+   .-+.-|++++...|+.|.+.+.
T Consensus       623 grl~FAGe~ts~~~~---g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          623 PRLFFAGEHTIRNYP---ATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             CCEEECSGGGCTTST---TSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEeccccCCCC---cCHHHHHHHHHHHHHHHHHHcc
Confidence            799999999876443   4588899999999999888654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=87.54  E-value=0.38  Score=44.61  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~   92 (514)
                      +|.|||+|-.|.++|..|++.    | ++|+++++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~----g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ----GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC----CCCeEEEECCCH
Confidence            599999999999999999986    8 8999999865

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=87.48  E-value=0.4  Score=45.96  Aligned_cols=33  Identities=30%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~   93 (514)
                      +|+|||+|..|.++|+.|++.    |+  .++++|....
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~----~~~~el~l~D~~~~   36 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQ----DVAKEVVMVDIKDG   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----TCSSEEEEECSSTT
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCchH
Confidence            699999999999999999985    65  8999998763

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=87.24  E-value=0.45  Score=45.77  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+..+|+|||+|-+|.++|+.|+..    ++  .+.++|.+.
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~----~~~~el~L~Di~~   40 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQ----GIAEEFVIVDVVK   40 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcC----CCCCEEEEEeCCc
Confidence            3457899999999999999999985    44  799999754

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=87.22  E-value=0.4  Score=45.89  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|..|++.    |  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~----g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQ----GVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCEEEEEcCCH
Confidence            699999999999999999986    7  6899999875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.19  E-value=0.51  Score=44.29  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|.|||+|..|.++|..|++.    |+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS----GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc----CCCcEEEEEeCCH
Confidence            699999999999999999996    77  899998765

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.19  E-value=0.52  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|+|.|+|..|..++..|.+.    |++|+++.|..
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~----g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ----GWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG----TCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHC----CCEEEEEEcCh
Confidence            5799999999999999999996    99999999876

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=87.15  E-value=0.52  Score=47.87  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ...+|+|||||.+|+-+|..+.+.    |. +|+++++.+.
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~----Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQ----GATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHT----TCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHc----CCCEEEEEEeCCc
Confidence            346899999999999999999886    76 6999998874

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=87.15  E-value=0.57  Score=45.13  Aligned_cols=34  Identities=38%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ..+|+|||+|..|.++|+.|+..    |+  .|.++|.+.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~----g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMK----DLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHH----CCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCCeEEEEECCH
Confidence            46899999999999999999985    66  899999865

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=87.14  E-value=0.5  Score=44.53  Aligned_cols=34  Identities=12%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc---EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~---~V~viE~~~   92 (514)
                      ..+|.|||+|-.|.++|..|.+.    |+   +|+++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~----g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIAN----GYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHT----TCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC----CCCCCeEEEEeCCH
Confidence            35799999999999999999996    77   899999876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=87.12  E-value=0.33  Score=47.85  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-------cEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-------LSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-------~~V~viE~~~~   93 (514)
                      .+|.|||+|-.|.++|..|++.    |       ++|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~----G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTN----AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHH----HHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHc----CCccCCCCCeEEEEECChh
Confidence            3699999999999999999986    8       89999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=87.02  E-value=0.56  Score=45.86  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .|+|+|||..|..+|+.+++.    |++|+++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~----G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA----GMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCC
Confidence            699999999999999999997    9999999987653

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=87.02  E-value=0.57  Score=50.47  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|.|||+|..|...|..|+++    |++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~a----G~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILS----NYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT----TCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhC----CCEEEEEECCHH
Confidence            4699999999999999999997    999999998863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.89  E-value=0.53  Score=42.72  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +...|+|.|| |-.|..++..|.+.    |++|+++.|+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~----G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK----GHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT----TCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC----CCeEEEEECChH
Confidence            3457999998 99999999999996    999999998763

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=86.86  E-value=0.4  Score=48.84  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||.|-.|+.+|..|++.+  .|++|+++++++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g--~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMC--PEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHC--TTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEECCH
Confidence            47999999999999999999852  269999999875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=86.82  E-value=0.51  Score=45.44  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=30.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ...+|+|||+|..|.++|+.|+..    |+  .+.++|...
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~----~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQ----GIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCeEEEEeCCh
Confidence            346899999999999999999985    66  899999854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=86.81  E-value=0.61  Score=43.66  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|+|-+|.++|..|++.    |.+|+|+.|..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~----G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSL----DCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCEEEEEECCH
Confidence            45799999999999999999997    89999998765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=86.81  E-value=0.5  Score=48.35  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||.|..|..+|..|++.    |++|+++++.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~----G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            4799999999999999999996    99999999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=86.78  E-value=0.67  Score=44.04  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...|+|||+|.+|.++|..|++.    |. +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~----G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST----AAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT----TCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC----CCCEEEEEeCCH
Confidence            45799999999999999999996    87 899999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=86.77  E-value=0.55  Score=43.22  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc----EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL----SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~----~V~viE~~~   92 (514)
                      .+|.|||+|-.|.++|..|.+.    |+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~----g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK----NIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhC----CCCCCCeEEEEeCCH
Confidence            4699999999999999999996    87    999999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=86.75  E-value=0.62  Score=43.48  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...|+|+|+|-+|.++|..|++.    |.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~----G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ----GLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            46899999999999999999997    889999998764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=86.67  E-value=0.63  Score=45.67  Aligned_cols=37  Identities=30%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +...+++|+|+|+|-+|-.+|..|++     .++|+|.++..
T Consensus        12 ~~g~~mkilvlGaG~vG~~~~~~L~~-----~~~v~~~~~~~   48 (365)
T 3abi_A           12 IEGRHMKVLILGAGNIGRAIAWDLKD-----EFDVYIGDVNN   48 (365)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHTT-----TSEEEEEESCH
T ss_pred             ccCCccEEEEECCCHHHHHHHHHHhc-----CCCeEEEEcCH
Confidence            34456789999999999999999988     57899988764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.63  E-value=0.53  Score=47.77  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||||.+|...|..|.+.    |.+|+|++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~----ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA----GARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----cCEEEEEcCCC
Confidence            45799999999999999999997    99999999754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.59  E-value=0.44  Score=45.10  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|-.|..+|..|++.    |++|+++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~----g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH----GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT----TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            599999999999999999996    89999999876

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=86.56  E-value=0.65  Score=45.79  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....++|+|||..|.++|..++..    |++|+|+|.++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~l----g~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFL----GYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHT----TCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCchhh
Confidence            456899999999999999999998    9999999988765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=86.51  E-value=0.39  Score=45.68  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=27.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|.+||-|..|...|..|.+.    |++|+++++.+..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~----G~~V~v~dr~~~~   40 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA----GYELVVWNRTASK   40 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEC------
T ss_pred             CcEEEEecHHHHHHHHHHHHHC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999987754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=86.34  E-value=1.7  Score=42.86  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|||+|..|..+|..+.+.    |++|++++..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~----G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEM----GYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCEEEEEeCCCC
Confidence            345899999999999999999997    999999997653

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=86.22  E-value=0.88  Score=44.80  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|||+|..|..+|..+++.    |++|.+++..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~l----G~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKM----GYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECCCC
Confidence            346799999999999999999997    999999997654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=86.14  E-value=0.76  Score=42.47  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|-.|...|..|.+.    |+.|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~----g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQT----PHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS----SCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhC----CCeEEEECCCH
Confidence            4799999999999999999986    88999999765

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.93  E-value=0.81  Score=44.13  Aligned_cols=35  Identities=40%  Similarity=0.509  Sum_probs=30.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ...+|+|||+|-.|.++|+.|+..    |+  .+.|+|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~----~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMK----DLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCceEEEEeCCh
Confidence            356899999999999999999885    66  899999764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.53  E-value=0.75  Score=43.58  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|.|||.|..|..+|..|+..    |.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~----G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAAL----GAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            346899999999999999999987    89999999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.44  E-value=0.76  Score=43.71  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|.|||+|..|..+|..|...    |.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~----G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAAL----GANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            346799999999999999999986    89999999865

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=85.42  E-value=0.6  Score=47.66  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|-.|..+|..|++.    |++|+++++.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~----G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEK----GFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            699999999999999999996    99999999865

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=85.39  E-value=0.58  Score=46.57  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||.|.+|..+|..|...    |.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~----Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAM----GSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHC----CCEEEEEeCCh
Confidence            456899999999999999999987    99999999876

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=85.35  E-value=0.58  Score=47.10  Aligned_cols=57  Identities=7%  Similarity=-0.063  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|..                    .++.+.....+|+++.||. |.|.|.++.
T Consensus       234 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~--------------------~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYG-GTYMLNKPVDDIIM--------------------ENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHT-CCCBCSCCCCEEEE--------------------ETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------eCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            578888988888877 89999999999986                    3344443335788899999 999998874

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=85.30  E-value=0.58  Score=47.81  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||.|-.|+.+|..|++.+  .|++|+++|+++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g--~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKC--PHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHC--TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEECCH
Confidence            47999999999999999999852  168999999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=85.22  E-value=0.7  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|+|+|..|.++|..|+..    |.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~----GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQA----GARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            456799999999999999999997    99999999865

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=84.97  E-value=0.66  Score=49.94  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||+|..|...|..|++.    |++|+++|+++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~a----G~~V~l~D~~~~  348 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASK----GTPILMKDINEH  348 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT----TCCEEEECSSHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhC----CCEEEEEECCHH
Confidence            34799999999999999999997    999999998863

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=84.92  E-value=0.74  Score=46.94  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +.+|.|||.|..|..+|..|++.    |++|+++++.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~----G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESR----GYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhC----CCEEEEEcCCH
Confidence            35799999999999999999996    89999999865

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=84.77  E-value=0.77  Score=44.52  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..|.|||+|-.|.++|..|++.    |++|+++++..
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~----G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDS----GVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT----TCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHC----cCEEEEEECCh
Confidence            4699999999999999999996    89999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=84.77  E-value=0.74  Score=46.97  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||.|..|..+|..|+..    |.+|+++|+.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~----Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQ----GARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            446799999999999999999986    89999999876

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=84.77  E-value=0.71  Score=42.68  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ..+|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~----Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA----GVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT----TCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc----CCCeEEEEeCCC
Confidence            45899999999999999999997    76 799999876

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=84.67  E-value=0.68  Score=48.38  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|||+|..|..+|..|.+.    |++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~----g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK----PVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECChHH
Confidence            6899999999999999999996    9999999999865

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=84.62  E-value=0.79  Score=44.17  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=29.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ++.+|+|||+|-+|.++|+.|+..    ++  .+.++|.+.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~----~~~~el~L~Di~~   44 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQ----GIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcC----CCCCEEEEEeCCc
Confidence            457899999999999999999885    44  799999754

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=84.48  E-value=1.1  Score=44.82  Aligned_cols=35  Identities=31%  Similarity=0.533  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|+|||..|..++..+++.    |++|.+++..+
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~l----G~~v~v~d~~~   68 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSM----GYRVAVLDPDP   68 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCC
Confidence            456899999999999999999997    99999998764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=84.25  E-value=0.69  Score=42.91  Aligned_cols=30  Identities=30%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~   90 (514)
                      +|.|||+|-.|.++|..|++.    |++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~----g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSR----GVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHC----CCeEEEeCC
Confidence            599999999999999999996    899999765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.24  E-value=0.87  Score=46.21  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|+|+|||-.|..+|..|.+     +++|.|+|++..
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-----~~~v~iIE~d~~  268 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-----TYSVKLIERNLQ  268 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-----TSEEEEEESCHH
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-----cCceEEEecCHH
Confidence            3589999999999999999976     689999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=84.21  E-value=0.93  Score=42.42  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|+|.|+|..|..++..|.+.    |++|+++.|...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~----g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQ----GHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCcc
Confidence            4699999999999999999996    999999998764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=84.07  E-value=1.1  Score=48.19  Aligned_cols=35  Identities=34%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      -..|.|||+|..|...|+.++.+    |++|+|+|..+.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~a----G~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARV----GISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC----CCchhcccchHh
Confidence            46899999999999999999997    999999998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=84.00  E-value=0.73  Score=43.21  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|||+|-+|.++|..|.+.    |.+|+++++..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~----g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKE----GAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHc----CCEEEEEECCH
Confidence            35799999999999999999996    78999999875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=83.98  E-value=0.7  Score=43.27  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|+|-+|.++|..|++.    |.+|+|+.|..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~----G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQA----QQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT----TCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            45799999999999999999997    89999999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=83.85  E-value=0.93  Score=43.94  Aligned_cols=34  Identities=29%  Similarity=0.540  Sum_probs=28.9

Q ss_pred             CccEEEECC-CHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           55 QYDVAVVGG-GMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ..+|+|||+ |-.|.++|+.|...    |+  +|+++|.+.
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~----g~~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMM----RLTPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHT----TCCSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhc----CCCCEEEEEeCCc
Confidence            457999998 99999999998886    64  799999764

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=83.78  E-value=1.2  Score=42.08  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|+|+|+|-+|.++|..|++.    | +|+|+.|..
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~----G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKD----N-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSS----S-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHC----C-CEEEEECCH
Confidence            35799999999999999999996    9 999998764

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=83.77  E-value=0.6  Score=45.50  Aligned_cols=37  Identities=14%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....++|+|||..+.++|..++..    |++|+|+|.++..
T Consensus       198 p~~~L~I~GaGhva~aLa~la~~l----gf~V~v~D~R~~~  234 (362)
T 3on5_A          198 PKERLIIFGAGPDVPPLVTFASNV----GFYTVVTDWRPNQ  234 (362)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHH----TEEEEEEESCGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEECCCccc
Confidence            357899999999999999999998    9999999988754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=83.67  E-value=0.72  Score=43.58  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ..+|+|||+|-.|..+|..|++.    |+ +++|+|.+..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~a----GVG~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRC----GIGKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHH----TCSEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHc----CCCEEEEECCCcc
Confidence            46899999999999999999998    65 7999998763

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=83.64  E-value=1.2  Score=45.09  Aligned_cols=56  Identities=7%  Similarity=-0.050  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccccccc--CCe-eEEEeCCCcEEEeeE-EEecCCC
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK--GHL-AKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|..                    .  ++. +.|.. +|.++.||. |.|.|.+
T Consensus       242 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          242 GELPQGFARLSAIYG-GTYMLDTPIDEVLY--------------------KKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             THHHHHHHHHHHHTT-CEEECSCCCCEEEE--------------------ETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------ECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            578889999998888 89999999999987                    2  233 35555 578899999 9999998


Q ss_pred             ch
Q 010225          247 SR  248 (514)
Q Consensus       247 S~  248 (514)
                      +.
T Consensus       300 ~~  301 (453)
T 2bcg_G          300 PE  301 (453)
T ss_dssp             GG
T ss_pred             ch
Confidence            64

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=83.53  E-value=1  Score=40.00  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|.|| |-.|..++..|.+.    |++|+++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~----g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR----GHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT----TCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC----CCEEEEEEcCc
Confidence            5999996 99999999999996    99999999876

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=83.39  E-value=0.8  Score=42.99  Aligned_cols=36  Identities=11%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~   94 (514)
                      ...|+|+|+|-+|.++|..|++.    |. +|+|+.|....
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~----G~~~v~v~~R~~~~  153 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI----VRPTLTVANRTMSR  153 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT----CCSCCEEECSCGGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC----CCCEEEEEeCCHHH
Confidence            45799999999999999999997    88 89999988643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=83.38  E-value=0.73  Score=42.82  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~   92 (514)
                      .+|.|||+|-.|..+|..|++.    |++ |.++++++
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~----g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK----GFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC----CCeEEEEEeCCH
Confidence            4799999999999999999986    888 89998765

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=83.37  E-value=0.87  Score=43.95  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccCCCCCCc-------EEEEEcCC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHL-------SVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~-------~V~viE~~   91 (514)
                      ++.+|+|+|| |-.|.+++..|...    |+       .|.++|..
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~----~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANG----DMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT----TTTCTTCCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC----CCcCCCCCCEEEEEcCC
Confidence            3468999998 99999999999885    54       79999876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=83.07  E-value=1.1  Score=40.24  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..|+|.|| |..|..++..|.+.    |++|+++.|.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~----g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNR----GFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTT----TCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHC----CCEEEEEEcCccc
Confidence            47999996 99999999999996    9999999998643

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=83.00  E-value=0.95  Score=43.36  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=28.6

Q ss_pred             cEEEECC-CHHHHHHHHHhccCCCCCC--cEEEEEcCCC
Q 010225           57 DVAVVGG-GMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~g--~~V~viE~~~   92 (514)
                      +|+|||| |-.|.++|..|+..    |  ..|.++|.+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~----~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNS----PLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC----TTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhC----CCCcEEEEEeCCc
Confidence            6999998 99999999999985    6  6899999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=82.89  E-value=1  Score=43.46  Aligned_cols=35  Identities=17%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ...|+|||+|-.|..+|..|++.    |+ +++|+|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a----GVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW----GVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCEe
Confidence            46899999999999999999998    65 6999998763

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=82.85  E-value=0.82  Score=43.69  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      +|+|||+|-.|.++|+.|+..    |+ .|.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~----~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR----GYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH----TCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhC----CCCEEEEEcCCh
Confidence            489999999999999999885    66 599999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=82.56  E-value=1.1  Score=42.82  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=29.8

Q ss_pred             CCccEEEECCC-HHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGG-MVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG-~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ...+|+|||+| ++|..+|..|...    |..|+|+++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~----gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLAND----GATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTT----SCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHC----CCEEEEEeCc
Confidence            45789999999 6899999999996    8899999775

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=82.56  E-value=1  Score=41.61  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .|+|||+|-+|-+++..|.+.    |. +|+|+.|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~----G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM----GVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT----TCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHc----CCCEEEEEeCCHH
Confidence            899999999999999999996    87 8999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=82.53  E-value=12  Score=40.98  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc
Q 010225          393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV  433 (514)
Q Consensus       393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~  433 (514)
                      +|+++.|++.+...+   .-+.-|++++...|+.|.+.+..
T Consensus       794 grL~FAGE~Ts~~~~---gtveGAi~SG~RAA~~Il~~l~~  831 (852)
T 2xag_A          794 PRLFFAGEHTIRNYP---ATVHGALLSGLREAGRIADQFLG  831 (852)
T ss_dssp             CCEEECSGGGCTTST---TSHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEehhHhCCCC---cCHHHHHHHHHHHHHHHHHHhhC
Confidence            799999999876443   35788999999999888887654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=82.48  E-value=0.87  Score=45.64  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .-+..|||.|-.|+.+|..|++.    |++|+++|+++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~----G~~V~~~D~~~~   45 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKH----GVDVLGVDINQQ   45 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CCccEEEeeCHHHHHHHHHHHHC----CCEEEEEECCHH
Confidence            34689999999999999999997    999999999874

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=82.40  E-value=0.65  Score=43.83  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|-.|..+|..|++.    |++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARA----GHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHT----TCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhC----CCEEEEEc-CH
Confidence            3799999999999999999996    89999998 54

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=83.12  E-value=0.26  Score=43.96  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..+|.|||+|-.|.++|..|.+.    |++|+++++...
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~----G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQC----GYSVVFGSRNPQ   53 (201)
Confidence            45799999999999999999986    899999988753

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.22  E-value=1.3  Score=41.65  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~----G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTH----GVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCCEEEEEECCH
Confidence            345899999999999999999997    87 799998875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=82.16  E-value=1.3  Score=38.71  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|+|+|| |-.|..++..|.+.    |++|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~----g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA----GYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT----TCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC----CCeEEEEEeChh
Confidence            46999999 99999999999996    899999998764

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=82.11  E-value=1.6  Score=42.99  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+...|+|+|+|..|..++..+.+.    |++|.+++..+.
T Consensus         9 ~~~~~ili~g~g~~~~~~~~a~~~~----G~~v~~~~~~~~   45 (391)
T 1kjq_A            9 PAATRVMLLGSGELGKEVAIECQRL----GVEVIAVDRYAD   45 (391)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTT----TCEEEEEESSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc----CCEEEEEECCCC
Confidence            3456899999999999999999996    999999997653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.00  E-value=1.3  Score=41.00  Aligned_cols=35  Identities=23%  Similarity=0.120  Sum_probs=30.2

Q ss_pred             CCccEEEECC-C-HHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGG-G-MVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGg-G-~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|.|| | -.|.++|..|++.    |.+|++++++.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~----G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLE----GADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHC----CCEEEEecCCH
Confidence            4457999999 7 5999999999996    99999998875

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=81.98  E-value=1.5  Score=41.23  Aligned_cols=35  Identities=11%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~----G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQ----QPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT----CCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhc----CCCeEEEEECCH
Confidence            346799999999999999999996    86 899998865

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.93  E-value=1.3  Score=39.62  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|.|| |-.|..++..|.+.    |++|+++.|+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~----g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR----GHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC----CCEEEEEEecc
Confidence            5999998 99999999999996    99999999875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=81.89  E-value=1.4  Score=42.53  Aligned_cols=34  Identities=15%  Similarity=0.312  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...|.|||.|-.|..+|..|+..    |++|+++++..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~----G~~V~~~d~~~  183 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGF----NMRILYYSRTR  183 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC----CCEEEEECCCc
Confidence            45799999999999999999986    99999999865

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=81.81  E-value=1.1  Score=41.56  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .|+|||+|-+|.++|..|.+.    |.+|+++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~----g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA----GLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            899999999999999999996    78999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=81.69  E-value=1.8  Score=41.48  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ....|+|.|| |-.|..++..|.+.    |++|+++.|...
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~----g~~V~~~~r~~~   55 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQ----GHEILVIDNFAT   55 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGG----TCEEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEECCCc
Confidence            3457999998 99999999999996    999999998653

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=81.67  E-value=1.4  Score=39.92  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CccEEEECC-CHHHHHHHHHhccCCCCCC-cEEEEEcCCCCC
Q 010225           55 QYDVAVVGG-GMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~   94 (514)
                      ...|+|.|| |-.|..+|..|++.    | ++|+++.|++..
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~----G~~~V~~~~R~~~~   60 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADK----QTIKQTLFARQPAK   60 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC----TTEEEEEEESSGGG
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhC----CCceEEEEEcChhh
Confidence            357999994 99999999999996    8 999999988643

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=81.54  E-value=1.4  Score=42.19  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=30.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~----Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALD----GVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHC----CCCEEEEEECCC
Confidence            345799999999999999999996    88 899999874

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=81.49  E-value=0.97  Score=43.56  Aligned_cols=42  Identities=14%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             cccCCCCCCccEEEECC-CHHHHHHHHHhccCCCCCC--cEEEEEcCCC
Q 010225           47 QSFTNNDDQYDVAVVGG-GMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (514)
Q Consensus        47 ~~~~~~~~~~dVvIVGg-G~aGl~~A~~L~~~~~~~g--~~V~viE~~~   92 (514)
                      ++.++......|+|.|| |..|..++..|.+.    |  ++|+++++..
T Consensus        16 ~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~----g~~~~v~~~~~~~   60 (346)
T 4egb_A           16 ENLYFQSNAMNILVTGGAGFIGSNFVHYMLQS----YETYKIINFDALT   60 (346)
T ss_dssp             --------CEEEEEETTTSHHHHHHHHHHHHH----CTTEEEEEEECCC
T ss_pred             cccccccCCCeEEEECCccHHHHHHHHHHHhh----CCCcEEEEEeccc
Confidence            33334445568999999 99999999999986    7  8888888765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=81.40  E-value=1  Score=44.82  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||.|.+|..+|..|...    |.+|+++|+++
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~----Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGF----GARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHC----CCEEEEECCCh
Confidence            356899999999999999999997    99999999865

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=81.20  E-value=1.3  Score=44.15  Aligned_cols=34  Identities=29%  Similarity=0.553  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +...|+|+|||..|..++..+.+.    |++|.+++ .+
T Consensus        23 ~~~~I~ilGgG~lg~~l~~aa~~l----G~~v~~~d-~~   56 (403)
T 3k5i_A           23 NSRKVGVLGGGQLGRMLVESANRL----NIQVNVLD-AD   56 (403)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH----TCEEEEEE-ST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEE-CC
Confidence            356899999999999999999997    99999999 44

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=81.19  E-value=1.5  Score=40.88  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~----G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQA----GPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----CCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHc----CCCEEEEEeCCH
Confidence            346799999999999999999997    86 899998865

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=80.83  E-value=1.1  Score=44.71  Aligned_cols=36  Identities=31%  Similarity=0.279  Sum_probs=31.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      -....|+|||.|..|..+|..|...    |.+|+++|+++
T Consensus       245 L~GKTVgVIG~G~IGr~vA~~lraf----Ga~Viv~d~dp  280 (464)
T 3n58_A          245 MAGKVAVVCGYGDVGKGSAQSLAGA----GARVKVTEVDP  280 (464)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            3456899999999999999999987    99999999865

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=80.80  E-value=1.1  Score=44.50  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ....|+|||+|..|.++|..|...    |. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~----G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDR----GVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH----CCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHC----CCCEEEEEeCCH
Confidence            345799999999999999999986    88 899998765

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=80.77  E-value=1.1  Score=43.20  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             CccEEEEC-CCHHHHHHHHHhccCCCCCC--cEEEEEcCCC
Q 010225           55 QYDVAVVG-GGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVG-gG~aGl~~A~~L~~~~~~~g--~~V~viE~~~   92 (514)
                      ..+|+||| +|-.|.++|..|+..    |  ..|.++|.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~----g~~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMN----PLVSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHC----TTEEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhC----CCCCEEEEEeCCC
Confidence            35799999 799999999999885    6  7899999765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=80.63  E-value=0.89  Score=48.77  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.3

Q ss_pred             CccEEEEC--CCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVG--GGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVG--gG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||  ||.+|+-+|..|++.    |.+|+++++.+..
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~----g~~Vtlv~~~~~l  560 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQK----GYEVSIVTPGAQV  560 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHT----TCEEEEEESSSST
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhC----CCeeEEEeccccc
Confidence            35699999  999999999999996    8999999998755

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=80.62  E-value=1.3  Score=42.67  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             CccEEEECC-CHHHHHHHHHhccCCCCCCc-------EEEEEcCCC
Q 010225           55 QYDVAVVGG-GMVGMALACSLASMPLTKHL-------SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~-------~V~viE~~~   92 (514)
                      ..+|+|+|| |..|..++..|.+.    |+       +|.++|+.+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~----g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAG----EMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTT----TTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC----CCCCCCCCCEEEEEeCCC
Confidence            357999998 99999999999885    64       899998753

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=80.45  E-value=1.6  Score=42.65  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ....|+|+|.|-.|..+|..|.+.    |.+|++.|++
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~----GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTE----GAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHC----CCEEEEEcCC
Confidence            446799999999999999999997    9999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	9e-27
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	8e-10
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-09
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	6e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	6e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	7e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	2e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	5e-04
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	5e-04
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	6e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	8e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.001
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	0.001
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.002
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.003
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.003
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.003
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	0.003
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.003
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.004
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score =  109 bits (271), Expect = 9e-27
 Identities = 68/453 (15%), Positives = 110/453 (24%), Gaps = 103/453 (22%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPR 109
            ++   DV +VG G  G+  A  L+     K  L V IID                 + +
Sbjct: 3   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK----------VYNGQ 52

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
              +   T+   K +G    +    +     + +++    G+ +   R  +         
Sbjct: 53  ADGLQCRTLESLKNLGLADKILSEANDM-STIALYNPDENGHIRRTDRIPDTLPGISRYH 111

Query: 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL 229
             VLH   +                     +L S + IS         L  +        
Sbjct: 112 QVVLHQGRIERR------------------ILDSIAEISDTRIKVERPLIPEKMEIDS-- 151

Query: 230 SDGTSLYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP 289
                        D     V     + +   S        T   N       Q       
Sbjct: 152 ---------SKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTE--NGLFRSNLQTQEEEDA 200

Query: 290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF 349
              LP G     I                             Y  G             F
Sbjct: 201 NYRLPEGKEAGEIET-----------------------VHCKYVIGCDGGHSWVRRTLGF 237

Query: 350 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLA 409
                +                                     +RV + GDA HT  P A
Sbjct: 238 EMIVTEKF--------------------------------SKDERVFIAGDACHTHSPKA 265

Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 469
           GQG+N    D   L   +     V     +  +LK YE ER+P    ++     F + +S
Sbjct: 266 GQGMNTSMMDTYNLGWKLG---LVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFS 322

Query: 470 VDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502
                 ++          +     +    +ASG
Sbjct: 323 GR-PAKDVADEMGVSMDVFKEAFVKG-NEFASG 353

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.6 bits (138), Expect = 8e-10
 Identities = 21/219 (9%), Positives = 47/219 (21%), Gaps = 31/219 (14%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           +  VA++G G  G+ L   L        +   I++                   R   + 
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHK----AGIDNVILERQTPDYV--------LGRIRAGVLE 49

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
              +   +E G  + + +    +      +        + + + ++      V     + 
Sbjct: 50  QGMVDLLREAGVDRRMARDGLVHEGVEIAFAG---QRRRIDLKRLSGGKTVTVYGQTEVT 106

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 234
             L+   +      T                   V        L                
Sbjct: 107 RDLMEARE--ACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDY---------- 154

Query: 235 LYAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH 273
               + G DG     R+    +         A       
Sbjct: 155 ----IAGCDGFHGISRQSIPAERMQHGRLFLAGDAAHIV 189

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 31/242 (12%), Positives = 62/242 (25%), Gaps = 30/242 (12%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ + G G+ G++ A +L    +     V +++S+  +           P      + PA
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIG---KVTLLESSSEIR----------PLGVGINIQPA 49

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
            +    E+G    +        +   +       +++    +         +    L   
Sbjct: 50  AVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMI 109

Query: 177 LLSCMQNTEFQKTI-YPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
           LL+ ++    Q+ +     +  +        I                            
Sbjct: 110 LLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADV------------ 157

Query: 236 YAKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPI 295
              LVGADG  S VR                             A   +      A   I
Sbjct: 158 ---LVGADGIHSAVRAHLHPDQRPLRDPLPHWGRG-RITLLGDAAHLMYPMGANGASQAI 213

Query: 296 GD 297
            D
Sbjct: 214 LD 215

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 386 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 445
              ++   R+ L+GDAAH ++P+   G +    D   L+  +A      AD+  A  L++
Sbjct: 182 PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----NADVAAA--LRE 235

Query: 446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHG 485
           YE  R+P    ++      +K            ++AA   
Sbjct: 236 YEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEA 275

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D++YDV V+G G+    L+  ++         V  +D NP  G
Sbjct: 4  DEEYDVIVLGTGLTECILSGIMSV----NGKKVLHMDRNPYYG 42

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG--KSNFIKKEDPPDPRV 110
           D  YDV V+G G+    L+  L+         V  ID     G   ++    +     + 
Sbjct: 3   DTDYDVIVLGTGITECILSGLLSV----DGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ 58

Query: 111 STVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
           + ++               V           ++ + 
Sbjct: 59  NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNI 94

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 39 PSSESEVKQSFTNN-------DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91
          P  ES V +  T           + DV VVG G  G++ A  ++  P   ++ VAII+ +
Sbjct: 10 PIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNP---NVQVAIIEQS 66

Query: 92 PALG 95
           + G
Sbjct: 67 VSPG 70

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            +AVVGG + G+  A  L        + V + + +P                    V P 
Sbjct: 6   RIAVVGGSISGLTAALMLRD----AGVDVDVYERSPQPL---------SGFGTGIVVQPE 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEIL 164
            + +  E G          +  + +       +G    + R  + + +
Sbjct: 53  LVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSI 100

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            YDV V+GGG  G+  A   A     +  +V ++D    LG+   I      +       
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPL 57

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTG 148
              +      G + Y         D +  ++  G
Sbjct: 58  DEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLG 91

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
            D  DV VVG G  G + A S           V +I+  P +G +  +            
Sbjct: 14  HDTVDVVVVGSGGAGFSAAISATD----SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQ 69

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYT 147
                I+   E+  ++   +      D   V   +
Sbjct: 70  QKAKKITDSPELM-FEDTMKGGQNINDPALVKVLS 103

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92
           Y+  V+GGG++G A+A  LA     ++ + A+ +S  
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAK----ENKNTALFESGT 37

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
              +  ++G G  G+  A  LA        SV + D+   +G+   +      +     V
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAK----LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEV 58

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTG 148
           TPA   +  +   +      R+  +D + +    G
Sbjct: 59  TPAH--YLSQNPHFVKSALARYTNWDFISLVAEQG 91

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
          +DV VVG G +GMA    LA     + +   ++D+      +
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAK----QGVKTLLVDAFDPPHTN 41

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98
          + D+ ++GGG  G   A   A       L V +++         
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 64

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D+ DV ++GGG  G   A   A +          I+   ALG
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGALG 39

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D +YDV V+GGG  G + A + A       L VAI++    LG
Sbjct: 4  DAEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTLG 42

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 22  SFCSSVAEKASSSNSGQ--PSSESEVKQSFT-------NNDDQYDVAVVGGGMVGMALAC 72
           + C S   K    +  +  P  ES V ++ T       +     DV +VG G  G++ A 
Sbjct: 8   THCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAY 67

Query: 73  SLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRV 110
            +A       L V II+S+ A G  +++  +      +
Sbjct: 68  VIAKNRPD--LKVCIIESSVAPGGGSWLGGQLFSAMVM 103

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 14/99 (14%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF---------IKKE 103
           +   DV ++G G  G++LA  LA         V ++   P    S F           + 
Sbjct: 5   EHSCDVLIIGSGAAGLSLALRLA-----DQHQVIVLSKGPVTEGSTFYAQGGIAAVFDET 59

Query: 104 DPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 142
           D  D  V     A                 R      + 
Sbjct: 60  DSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLID 98

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          +  +DV ++GGG  G   A   A +      + A ++    LG
Sbjct: 3  NKSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKLG 41

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG------KSNFIKKEDPPDPR 109
           YD  +VG G+ G   A  L       +  V +I+    +G          I+        
Sbjct: 2   YDYIIVGSGLFGAVCANELKK----LNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHI 57

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 144
             T       +  ++  +        A +      
Sbjct: 58  FHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFN 92

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
           +  DV ++G G  G+A A S           V +++  P  G +
Sbjct: 21 KETTDVVIIGSGGAGLAAAVSARD----AGAKVILLEKEPIPGGN 61

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG---KSNFIKKEDPPDP---RV 110
           DV VVGGG+ GMA A  L        L+V ++++   +G    +   +K    D     V
Sbjct: 1   DVVVVGGGISGMAAAKLLHD----SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV 56

Query: 111 STVTPATISFFKEIGA--WQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR 157
                  +   KE+G   ++  +  R  +  K + + + G     +N  
Sbjct: 57  GPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPI 105

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG--KSNFIKKEDPPDPRVSTVT 114
           +VAVVGGG+ G+A+A  L S    +     +++S+  LG             +   ++  
Sbjct: 2   NVAVVGGGISGLAVAHHLRS----RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFL 57

Query: 115 ---PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
              PAT +    +     ++    A   +                  +  +IL      +
Sbjct: 58  DREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLR 117

Query: 172 VLHSSLLSCMQN 183
           V           
Sbjct: 118 VAGELFSRRAPE 129

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
             +   V VVG G  G   + +          +V ++D  P  G +
Sbjct: 15 GPSETTQVLVVGAGSAGFNASLAAKK----AGANVILVDKAPFSGGN 57

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALG 95
          ++ DV +VG G  G++ A  L  +       L V +++    +G
Sbjct: 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 40/376 (10%), Positives = 92/376 (24%), Gaps = 32/376 (8%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            V VVG GM G++ A  L+   +T    + I+++   +G             R+     A
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITD---LLILEATDHIG------------GRMHKTNFA 46

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
            I+   E+GA  +V+       + +     + L    + +            +  V    
Sbjct: 47  GINV--ELGA-NWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDED 103

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
            +               +L++         +S+ +         + +     +      Y
Sbjct: 104 YVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLN--EHQPNGPATPVDMVVDYY 161

Query: 237 AKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG 296
                                  +S   + +    +        +               
Sbjct: 162 KFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGK 221

Query: 297 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA 356
                +      ++                 ++ DY        +    +  F       
Sbjct: 222 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTW 281

Query: 357 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQG-VNL 415
            + A   F  P  V +   +++  P+           RV   G+     +     G    
Sbjct: 282 KVRAIYQFW-PVGVNRYEYDQLRAPV----------GRVYFTGEHTSEHYNGYVHGAYLS 330

Query: 416 GFGDASTLSRIIAEGI 431
           G   A  L     + +
Sbjct: 331 GIDSAEILINCAQKKM 346

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 7/62 (11%), Positives = 17/62 (27%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           + ++G G VG A+A  L +  +         +           +           +    
Sbjct: 4   IGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND 63

Query: 118 IS 119
            +
Sbjct: 64  WA 65

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           + V+G G VG   A  LA   L + L +  +      GK+  + +  P     + VT + 
Sbjct: 3   ITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN 62

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93
            + ++G G+VG  LA  L +       ++ ++D  P 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWN---NITVLDQGPL 36

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
           ++ DV VVG G  G+     L         SV +I++   +G   +  +     P     
Sbjct: 6   EEVDVLVVGAGFSGLYALYRL----RELGRSVHVIETAGDVGGVWYWNRY----PGARCD 57

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 158
             +    +               Y  + ++  Y      K++ R 
Sbjct: 58  IESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRS 102

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           + +  VVG G  G   A   A +       V I++     G    +          ++  
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKGNLGGVCLNVGCIPSKALISASHR 58

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
                  +E        +  +   D  +V ++
Sbjct: 59  YEQAKHSEE-----MGIKAENVTIDFAKVQEW 85

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           V V+G G VG +   +L +  +   + +   + + A+G +          P+   +    
Sbjct: 9   VVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD 68

Query: 118 ISFFKE 123
               ++
Sbjct: 69  YDDCRD 74

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 16/137 (11%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
           + D+    V+G G  G   A  L        +   I++                  P   
Sbjct: 4   DGDRVPALVIGSGYGGAVAALRLTQ----AGIPTQIVEMGR-----------SWDTPGSD 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
                 +    +   W   +  +          + +   Y      +    I        
Sbjct: 49  GKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIK-VYQGRG 107

Query: 172 VLHSSLLSCMQNTEFQK 188
           V   SL++       ++
Sbjct: 108 VGGGSLVNGGMAVTPKR 124

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            YD+ V+G G  G+    + AS+   +   VA+ID     G  ++               
Sbjct: 3   AYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAALGGTCVNVGCVPK 59

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
              ++    +   +           +    ++
Sbjct: 60  KLMVTGANYMDTIRESAGFGWELDRESVRPNW 91

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           N+  +YD   +GGG  G   +  L +M         I+D  P LG
Sbjct: 37 ENDPREYDAIFIGGGAAGRFGSAYLRAM----GGRQLIVDRWPFLG 78

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 4/90 (4%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           Q  + ++GGG  G   A     +     +   +++     G    I              
Sbjct: 5   QTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQ 60

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVW 144
               S F E                +   W
Sbjct: 61  FHQASRFTEPSPLGISVASPRLDIGQSVAW 90

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
            D  V+GGG+ G+  A +       K LS  ++   P   
Sbjct: 5  YCDSLVIGGGLAGLRAAVATQQ----KGLSTIVLSLIPVKR 41

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          Q D+A+VG G  G+  A + A      +  +A+I     + 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYPMR 43

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
          VA++G G VG + A ++A       L   +ID        
Sbjct: 4  VAIIGAGFVGASAAFTMALRQTANEL--VLIDVFKEKAIG 41

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           YD   +GGG  G+A     A          A+I++    G
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKELGG 38

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 45  VKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED 104
            +       +   V +VG GM G++ A  LA         V +++++   G         
Sbjct: 20  ARNGLKATSNPKHVVIVGAGMAGLSAAYVLAG----AGHQVTVLEASERPG--------- 66

Query: 105 PPDPRVSTVTPATISFFKEIGAWQYVQQHRH--AYFDKMQVWD 145
               RV T       ++  +G  +  ++HR    Y  K  +  
Sbjct: 67  ---GRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL 106

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98
          + VVG G VGMA A S+    L   L++   D++   G++ 
Sbjct: 22 ITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEAL 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.89
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.58
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.48
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.45
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.43
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.32
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.28
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.24
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.22
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.15
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.13
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.05
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.01
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.95
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.93
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.84
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.83
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.8
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.8
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.79
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.79
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.76
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.75
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.73
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.71
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.67
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.67
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.62
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.6
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.59
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.57
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.54
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.54
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.54
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.52
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.48
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.48
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.45
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.45
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.43
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.4
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.4
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.4
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.39
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.38
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.36
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.35
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.34
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.32
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.32
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.29
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.23
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.23
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.22
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.18
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.15
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.13
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.12
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.08
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.05
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.02
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.01
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.95
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.88
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.88
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.86
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.83
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.76
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.76
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.74
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.73
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.63
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.63
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.38
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.33
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.71
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.51
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.38
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.35
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.31
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.25
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.0
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.86
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.67
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.6
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.56
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.5
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.19
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.13
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.02
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.76
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.64
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.63
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.5
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.17
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	93.85
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.63
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.62
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.57
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.52
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.28
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.2
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.16
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.84
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.76
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.75
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.37
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.37
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.29
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.27
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.27
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.25
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.14
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.97
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.89
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.86
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.64
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.62
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.47
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.06
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.03
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.65
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.37
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.05
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	89.9
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.88
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.87
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.76
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.76
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.7
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.48
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.47
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	89.06
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.04
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.82
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.3
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	86.94
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.38
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	85.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.88
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.41
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	84.93
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	84.63
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	84.38
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.26
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.23
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.94
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	83.74
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.07
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	82.88
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	82.25
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	82.24
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.2
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.58
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	81.55
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	81.54
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	80.32
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	80.05

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=2.1e-32  Score=272.45  Aligned_cols=339  Identities=16%  Similarity=0.169  Sum_probs=200.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCC-CCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPL-TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~-~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..|||+||||||+||++|..|++... +.|++|+||||++.+          ...+++..|+++++++|+++|+++++..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~----------~~~~r~~~l~~~~~~~L~~lGl~~~i~~   75 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK----------VYNGQADGLQCRTLESLKNLGLADKILS   75 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC----------CCSCSCCEECHHHHHHHHTTTCHHHHHT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC----------CcCCeEEEECHHHHHHHHHcCChHHHHh
Confidence            46999999999999999999963100 039999999999877          4567789999999999999999999998


Q ss_pred             hhccCcceEEEEeCCCcceee-ec--cC--CCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCc
Q 010225          133 HRHAYFDKMQVWDYTGLGYTK-YN--AR--DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~  207 (514)
                      ... ....+.++......... ..  ..  ..........+.+..+...|.+.+.+.....+.....+            
T Consensus        76 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------  142 (360)
T d1pn0a1          76 EAN-DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL------------  142 (360)
T ss_dssp             TCB-CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE------------
T ss_pred             hcC-CcceeEEEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec------------
Confidence            777 66677666543322221 11  11  11123345678899999999888765432221111111            


Q ss_pred             ccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecC
Q 010225          208 SVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP  286 (514)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (514)
                                             .+..+.+|. ++|||.+|.+|..............              . .     
T Consensus       143 -----------------------~~~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~~--------------~-~-----  179 (360)
T d1pn0a1         143 -----------------------IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPL--------------Q-F-----  179 (360)
T ss_dssp             -----------------------EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCC--------------T-T-----
T ss_pred             -----------------------ccceEEeeEEEEeecCCcceEEEEEEeecccccce--------------e-e-----
Confidence                                   123478999 9999999999865421111000000              0 0     


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                           ..+..++...+.+...+..                .............   ...........+....        
T Consensus       180 -----~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--------  227 (360)
T d1pn0a1         180 -----GHKTENGLFRSNLQTQEEE----------------DANYRLPEGKEAG---EIETVHCKYVIGCDGG--------  227 (360)
T ss_dssp             -----CCCCCSSSCCCHHHHHHHH----------------HTSCCCSTTCCTT---CEEEEEEEEEEECCCT--------
T ss_pred             -----eeecCCCceEEeeecCCcc----------------cceeecCcccchh---hHHHHHHHhhcCcccc--------
Confidence                 0000011100000000000                0000000000000   0000000010110000        


Q ss_pred             CCceeeeccceeeeecccccccccc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  445 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~  445 (514)
                            .......++.......+|. .+||+|+|||||.++|+.|||+|+||+||..|+++|...++..   ..+.+|+.
T Consensus       228 ------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~---~~~~~L~~  298 (360)
T d1pn0a1         228 ------HSWVRRTLGFEMIVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---AKRDILKT  298 (360)
T ss_dssp             ------TCHHHHHHTCCCEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---BCGGGGHH
T ss_pred             ------cchhhcccccccchhhheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCC---ChHHHHHH
Confidence                  0000011223333345565 5899999999999999999999999999999999999987643   33678999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHH---hhcCC
Q 010225          446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISY---ASGEQ  504 (514)
Q Consensus       446 Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~---~~g~~  504 (514)
                      |+++|+++...++..++.+.++|+.... ....+.    .....+.+++.+++.   ++|.+
T Consensus       299 Y~~~R~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~f~~~~~~~~G~~  355 (360)
T d1pn0a1         299 YEEERQPFAQALIDFDHQFSRLFSGRPA-KDVADE----MGVSMDVFKEAFVKGNEFASGTA  355 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCBC-SSTTCT----TSBCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCch-HHHHHh----cccchHHHHHHHHHhhhhheeeC
Confidence            9999999999999999999999987532 222221    222334455555443   56654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.8e-29  Score=242.69  Aligned_cols=268  Identities=20%  Similarity=0.241  Sum_probs=193.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ++||+||||||+||++|+.|+++    |+ +|+|+||.+.+          ...++++.++++++++|+++|+++.+.+.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~----Gi~~V~V~Er~~~~----------~~~g~~i~l~~~~~~~l~~~~~~~~~~~~   66 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQA----GIGKVTLLESSSEI----------RPLGVGINIQPAAVEALAELGLGPALAAT   66 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESSSSC----------CCCSCEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC----CCCeEEEEeCCCCC----------CCCceEEEECHHHHHHHHHcCchhhhHhh
Confidence            47999999999999999999997    96 89999999877          45677999999999999999999999887


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCC-CCcccEEEEehHHHHHHHHHHHhc-CCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDV-NKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDS  211 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~v~~~~~v~~v~~~~~~~~~~~~~  211 (514)
                      .. ......+++..+.....+..... ......+...+......+.+...+ ..++.+.++++++.+..           
T Consensus        67 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------  134 (288)
T d3c96a1          67 AI-PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-----------  134 (288)
T ss_dssp             SE-EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-----------
T ss_pred             hc-ccccceeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeee-----------
Confidence            66 44455566655544433332222 223334455666665555554432 23488999999999986           


Q ss_pred             CCccccccccCCeeEEEeCCC----cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecC
Q 010225          212 TPSATTLFTKGHLAKLDLSDG----TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP  286 (514)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g----~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (514)
                               ..+.+.+.+.+|    +++.||+ |+|||.+|.+|+.+........+                        
T Consensus       135 ---------~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~~~~~------------------------  181 (288)
T d3c96a1         135 ---------RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRD------------------------  181 (288)
T ss_dssp             ---------ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCCC------------------------
T ss_pred             ---------cCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccccccccc------------------------
Confidence                     456777877765    3799999 99999999998775322111100                        


Q ss_pred             CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225          287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  366 (514)
Q Consensus       287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (514)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (288)
T d3c96a1         182 --------------------------------------------------------------------------------  181 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225          367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  446 (514)
Q Consensus       367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y  446 (514)
                                         ....+..++++++|||+|.++|+.|||+|++|+|+..|++.|.+.    .+  ...+|..|
T Consensus       182 -------------------~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~~----~~--~~~al~~y  236 (288)
T d3c96a1         182 -------------------PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN----AD--VAAALREY  236 (288)
T ss_dssp             -------------------CCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC----SS--HHHHHHHH
T ss_pred             -------------------cccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHhhC----CC--HHHHHHHH
Confidence                               011244578999999999999999999999999999999999863    23  37899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225          447 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  486 (514)
Q Consensus       447 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  486 (514)
                      ++.|+++++.++..++...+.+..........++..|..+
T Consensus       237 ~~~r~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (288)
T d3c96a1         237 EEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAI  276 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Confidence            9999999999999998888776554444445555555443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=7.3e-27  Score=225.67  Aligned_cols=280  Identities=17%  Similarity=0.153  Sum_probs=213.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +++||+||||||+||++|+.|+++    |++|+||||++...        .....++..++++++++|+++|+++.+...
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~----G~~v~vlE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~   68 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQTPDY--------VLGRIRAGVLEQGMVDLLREAGVDRRMARD   68 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSCHHH--------HHTCCCCCEECHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC--------CCCCceEEEECHHHHHHHHHcCchHHHHhh
Confidence            467999999999999999999997    99999999987431        012445788999999999999999999887


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                      .. +...+.+++..........  ........+.+.+..+.+.|.+.+.+.++ .+.++..++....             
T Consensus        69 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~-------------  131 (292)
T d1k0ia1          69 GL-VHEGVEIAFAGQRRRIDLK--RLSGGKTVTVYGQTEVTRDLMEAREACGA-TTVYQAAEVRLHD-------------  131 (292)
T ss_dssp             CE-EESCEEEEETTEEEEECHH--HHHTSCCEEECCHHHHHHHHHHHHHHTTC-EEESSCEEEEEEC-------------
T ss_pred             cc-cccceEEEecccccccccc--cccccccceeecHHHHHHHHHHHHHhCCC-cEEEcceeeeeee-------------
Confidence            66 5677777776544333222  22234556889999999999999999885 4555555555443             


Q ss_pred             ccccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCc
Q 010225          214 SATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP  289 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  289 (514)
                            .+++.+.|.+ .+|+  +++||+ |+|||.+|.+|+.+.                                   
T Consensus       132 ------~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~i~-----------------------------------  170 (292)
T d1k0ia1         132 ------LQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIP-----------------------------------  170 (292)
T ss_dssp             ------TTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSC-----------------------------------
T ss_pred             ------eccCceEEEEecCCcEEEEEeCEEEECCCCCCcccceee-----------------------------------
Confidence                  1234455554 3554  588999 999999999998641                                   


Q ss_pred             eEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225          290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  369 (514)
Q Consensus       290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (514)
                                                            .                                         
T Consensus       171 --------------------------------------~-----------------------------------------  171 (292)
T d1k0ia1         171 --------------------------------------A-----------------------------------------  171 (292)
T ss_dssp             --------------------------------------G-----------------------------------------
T ss_pred             --------------------------------------e-----------------------------------------
Confidence                                                  0                                         


Q ss_pred             eeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 010225          370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE  449 (514)
Q Consensus       370 ~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~  449 (514)
                                        ..+..++..++||++|.++|..|+|.|.++.|+..|++.+...+..+.    ...+..|...
T Consensus       172 ------------------~~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~~~----~~~~~~~~~~  229 (292)
T d1k0ia1         172 ------------------ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGR----GELLERYSAI  229 (292)
T ss_dssp             ------------------GGSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCC----GGGGGGHHHH
T ss_pred             ------------------ccccccccccceeeeeecCCccccccccccccccccccceeeEecCCC----HHHhhhhHHH
Confidence                              012336788999999999999999999999999999999999887653    3467788887


Q ss_pred             hhHHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225          450 RKPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  504 (514)
Q Consensus       450 r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~  504 (514)
                      +..+.............+.+.   ..++...+|...+..+...|..+..+...-.|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~iae~yvg~p  287 (292)
T d1k0ia1         230 CLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLP  287 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHhhcCCCC
Confidence            777776666666666665554   4577888888888888888999998888777654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.89  E-value=2.8e-21  Score=182.95  Aligned_cols=240  Identities=22%  Similarity=0.208  Sum_probs=176.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ...+|+||||||+||++|+.|++.    |++|+||||++.+.         ...++++.+++++.++|+++|+..+....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~---------~~~~~g~~~~~~~~~~l~~~g~~~~~~~~   69 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDA----GVDVDVYERSPQPL---------SGFGTGIVVQPELVHYLLEQGVELDSISV   69 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC---------CCCSCEEECCHHHHHHHHHTTCCGGGTCB
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC---------CCCceEEEECccHHHHHHHcCcchhhhcc
Confidence            356799999999999999999996    99999999987652         23457889999999999999987665442


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         ....+.+++............      .........+...+....   +.+.++++++|+++..             
T Consensus        70 ---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~-------------  124 (265)
T d2voua1          70 ---PSSSMEYVDALTGERVGSVPA------DWRFTSYDSIYGGLYELF---GPERYHTSKCLVGLSQ-------------  124 (265)
T ss_dssp             ---CCCEEEEEETTTCCEEEEEEC------CCCEEEHHHHHHHHHHHH---CSTTEETTCCEEEEEE-------------
T ss_pred             ---CCCcceeEeccCCceeccccc------ccccchhHHHHHHHHHhc---ccceeecCcEEEEEEe-------------
Confidence               334444444333222221110      011223344444444333   3478999999999987             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceEE
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL  292 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  292 (514)
                             .++.++++++||+++++|+ |+|||.+|.+|..+.....                                  
T Consensus       125 -------~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~~~~~~~----------------------------------  163 (265)
T d2voua1         125 -------DSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIET----------------------------------  163 (265)
T ss_dssp             -------CSSCEEEEETTSCEEEESEEEECCCTTCHHHHHHHCCCC----------------------------------
T ss_pred             -------eCCceEEEECCCCEEEEEEEecccccccccccccccccc----------------------------------
Confidence                   5578999999999999999 9999999998763210000                                  


Q ss_pred             eecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225          293 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  372 (514)
Q Consensus       293 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (514)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (265)
T d2voua1         164 --------------------------------------------------------------------------------  163 (265)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225          373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  452 (514)
Q Consensus       373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~  452 (514)
                                    ...+....+...||++|...|..++|.+++++|+..|++.+...    .+.  ...|..|+..|.+
T Consensus       164 --------------~~~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~~----~~~--~~~l~~~~~~r~~  223 (265)
T d2voua1         164 --------------VDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN----HDL--RGSLQSWETRQLQ  223 (265)
T ss_dssp             --------------CSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHHC----SCH--HHHHHHHHHHHHH
T ss_pred             --------------ccccccccccccccccccccccccccceeeeccHHHHHHHHhhc----CCH--HHHHHHHHHHHHH
Confidence                          01123357888999999999999999999999999999988763    233  7789999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCC
Q 010225          453 ANIVMMAVLDGFQKAYSVDF  472 (514)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~  472 (514)
                      +.+.++..++....+.+...
T Consensus       224 ~~~~~~~~~r~~g~~~~~~~  243 (265)
T d2voua1         224 QGHAYLNKVKKMASRLQHGG  243 (265)
T ss_dssp             HHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            99999888888877765543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=3.9e-21  Score=191.42  Aligned_cols=136  Identities=14%  Similarity=0.117  Sum_probs=87.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCC--CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMP--LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~--~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (514)
                      .++|||||||||||||++|+.|+|+.  -..|++|+||||+..++...|         .|..+.+.+++.|-  ..+...
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~---------~Ggvl~~~~l~~l~--p~~~~~   98 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL---------SGACLDPRAFEELF--PDWKEK   98 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC---------CCCEECTHHHHHHC--TTHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc---------ccccccHHHHHHHc--cchhhh
Confidence            45699999999999999999999710  003999999999999865443         24567776655431  111110


Q ss_pred             Hh--hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEee
Q 010225          131 QQ--HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (514)
Q Consensus       131 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~  200 (514)
                      ..  ..........+..........+...........+.+.+..+..++.+.++..+ +++..+..+.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g-~~~~~~~~~~~~l~  169 (380)
T d2gmha1          99 GAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALG-VEVYPGYAAAEILF  169 (380)
T ss_dssp             TCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEE
T ss_pred             ccccccceecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhcc-ceeeeecceeeeee
Confidence            00  00111122223333322222222222233445688999999999999999998 99999999999887

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.58  E-value=2.9e-16  Score=146.88  Aligned_cols=166  Identities=20%  Similarity=0.254  Sum_probs=92.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      ++|||+||||||+|+++|+.|++.    |++|+||||++.++........... ........  .......+........
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~----G~~V~liEk~~~~g~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~   73 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEE----GANVLLLDKGNKLGRKLAISGGGRC-NVTNRLPL--DEIVKHIPGNGRFLYS   73 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHTGGGTC-CCEECSCH--HHHHHTCTBTGGGGHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCcceeccCCcce-eccccccc--chhhcccccchhhhhh
Confidence            479999999999999999999996    9999999999876422110000000 00000110  1111111111110000


Q ss_pred             hccCcc---eEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225          134 RHAYFD---KMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       134 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                      ......   ...+....+..   +.... .............+.+.|.+.+++.+ ++|+++++|++++.          
T Consensus        74 ~~~~~~~~~~~~~~~~~g~~---~~~~~-~~~~~~~~~~~~~i~~~L~~~~~~~g-v~i~~~~~v~~i~~----------  138 (251)
T d2i0za1          74 AFSIFNNEDIITFFENLGVK---LKEED-HGRMFPVSNKAQSVVDALLTRLKDLG-VKIRTNTPVETIEY----------  138 (251)
T ss_dssp             HHHHSCHHHHHHHHHHTTCC---EEECG-GGEEEETTCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE----------
T ss_pred             hhhhhhhHHHHHHHHhcCCc---ccccc-ccceecccccHHHHHHHHHHHHHHcC-CcccCCcEEEEEEE----------
Confidence            000000   00000000000   00000 00000011234678899999999887 99999999999987          


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR  250 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR  250 (514)
                               +++....|.+++|++++||. |.|+|..|..+
T Consensus       139 ---------~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         139 ---------ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             ---------ETTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             ---------ECCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence                     12344568889999999999 99999998653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.48  E-value=1.1e-13  Score=131.37  Aligned_cols=61  Identities=13%  Similarity=0.141  Sum_probs=54.0

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                      ..++...+...|.+.+++.| ++++++++|++++.                    .++.+.|++++| ++.||. |.|.|
T Consensus       145 g~~~p~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~v~V~t~~g-~i~a~~VViAaG  202 (281)
T d2gf3a1         145 GVLFSENCIRAYRELAEARG-AKVLTHTRVEDFDI--------------------SPDSVKIETANG-SYTADKLIVSMG  202 (281)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSCEEEEETTE-EEEEEEEEECCG
T ss_pred             cccccccccccccccccccc-ccccCCcEEEEEEE--------------------ECCEEEEEECCc-EEEcCEEEECCC
Confidence            45778899999999999998 99999999999987                    557788998887 499999 99999


Q ss_pred             CCch
Q 010225          245 GKSR  248 (514)
Q Consensus       245 ~~S~  248 (514)
                      .+|.
T Consensus       203 ~~s~  206 (281)
T d2gf3a1         203 AWNS  206 (281)
T ss_dssp             GGHH
T ss_pred             Ccch
Confidence            9886

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.45  E-value=4e-14  Score=133.93  Aligned_cols=68  Identities=15%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                      .++...+...|.+.+++.| ++|+++++|++|+.                    +++.+.|.+++| ++.||. |.|+|.
T Consensus       147 ~i~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~t~~g-~i~a~~vV~AaG~  204 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLG-AEIFEHTPVLHVER--------------------DGEALFIKTPSG-DVWANHVVVASGV  204 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTT-CEEETTCCCCEEEC--------------------SSSSEEEEETTE-EEEEEEEEECCGG
T ss_pred             eeecccchhHHHHHHHHcC-CEEecceEEEeEEe--------------------ecceEEEecCCe-EEEcCEEEECCCc
Confidence            4678899999999999998 99999999999986                    456788888777 599999 999999


Q ss_pred             Cch-hhhhhCCC
Q 010225          246 KSR-VRELAGFK  256 (514)
Q Consensus       246 ~S~-vR~~l~~~  256 (514)
                      ||. +.+.+|..
T Consensus       205 ~s~~l~~~~G~~  216 (276)
T d1ryia1         205 WSGMFFKQLGLN  216 (276)
T ss_dssp             GTHHHHHHTTCC
T ss_pred             cHHHHHhhcCCC
Confidence            986 56666654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=6.3e-13  Score=124.03  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCce-EEeChh-hHHHHHH
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRV-STVTPA-TISFFKE  123 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~-------~~~~~~~~~~~~~-~~l~~~-~~~~l~~  123 (514)
                      .+.+||+||||||+||++|+.|++.    |++|+||||.+.++.+       .|........... ....+. ....|..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~----G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~   77 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKL----GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALAR   77 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhh
Confidence            3568999999999999999999996    9999999999877522       1211111111111 111111 2233444


Q ss_pred             cCCcHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCC
Q 010225          124 IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (514)
Q Consensus       124 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~  203 (514)
                      ....+.+........   .+..... ....            ..-....+.+.|.+.+++.+ ++|+++++|++++..  
T Consensus        78 ~~~~~~~~~~~~~g~---~~~~~~~-~~~~------------~~~~a~~i~~~L~~~~~~~g-V~i~~~~~V~~i~~~--  138 (253)
T d2gqfa1          78 YTNWDFISLVAEQGI---TYHEKEL-GQLF------------CDEGAEQIVEMLKSECDKYG-AKILLRSEVSQVERI--  138 (253)
T ss_dssp             SCHHHHHHHHHHTTC---CEEECST-TEEE------------ETTCTHHHHHHHHHHHHHHT-CEEECSCCEEEEEEC--
T ss_pred             hcccchhhhhhhcCc---ceeeecC-Cccc------------cccchhHHHHHHHHHHHHcC-CCeecCceEEEEEee--
Confidence            332221111000000   0111111 0110            01135778899999999887 999999999999871  


Q ss_pred             CCCcccCCCCccccccccCCee-EEEeCCCcEEEeeE-EEecCCCch
Q 010225          204 SSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                             .         ++..+ .+...++.+++||. |.|+|..|.
T Consensus       139 -------~---------~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         139 -------Q---------NDEKVRFVLQVNSTQWQCKNLIVATGGLSM  169 (253)
T ss_dssp             -------C---------SCSSCCEEEEETTEEEEESEEEECCCCSSC
T ss_pred             -------c---------CCceeEEEEecCCEEEEeCEEEEcCCcccc
Confidence                   1         11222 23334677899999 999998774

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.32  E-value=1.9e-12  Score=123.35  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=90.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      +..+||||||||++||++|+.|++.    |++|+||||++.++........  +                  |+.-+...
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~----G~~v~i~Ek~~~iGGtW~~n~y--p------------------g~~~d~~~   60 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLREL----GRSVHVIETAGDVGGVWYWNRY--P------------------GARCDIES   60 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTHHHHCCC--T------------------TCBCSSCT
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEEcCCCcccccccCCC--C------------------Cceecccc
Confidence            4579999999999999999999996    9999999999987422100000  0                  00000000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCc--eEEcCCeeEEEeeCCCCCCcccC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~v~~~~~v~~v~~~~~~~~~~~~  210 (514)
                          .....      ......+..    .........+..+.++|.+.+++.+ +  .|+++++|+++..+         
T Consensus        61 ----~~~~~------s~~~~~~~~----~~~~~~~p~~~e~~~Yl~~~a~~~~-L~~~I~f~t~V~~~~~d---------  116 (298)
T d1w4xa1          61 ----IEYCY------SFSEEVLQE----WNWTERYASQPEILRYINFVADKFD-LRSGITFHTTVTAAAFD---------  116 (298)
T ss_dssp             ----TTSSC------CSCHHHHHH----CCCCBSSCBHHHHHHHHHHHHHHTT-GGGGEECSCCEEEEEEE---------
T ss_pred             ----ccccc------cccccccCC----CCCccccCccchHHHHHHHHHHHcC-CcccccCCcEEEEEEEe---------
Confidence                00000      000000000    0000112367889999999999886 5  69999999999871         


Q ss_pred             CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225          211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS  247 (514)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S  247 (514)
                               +..+.+.|.+.++.+++||+ |.|+|..|
T Consensus       117 ---------e~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1         117 ---------EATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             ---------TTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             ---------cCCCceeeccccccccccceEEEeecccc
Confidence                     13467999999999999999 99999765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.28  E-value=4.9e-12  Score=121.11  Aligned_cols=70  Identities=13%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEec
Q 010225          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++. +.|.+++| +++||. |.|.
T Consensus       143 g~~~p~~l~~~l~~~a~~~g-v~i~~~~~V~~i~~--------------------~~~~v~~V~T~~g-~i~a~~VV~aa  200 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAG-VTYRGSTTVTGIEQ--------------------SGGRVTGVQTADG-VIPADIVVSCA  200 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEETTE-EEECSEEEECC
T ss_pred             cccchhhhhhhHHhhhhccc-ccccCCceEEEEEE--------------------eCCEEEEEeccce-eEECCEEEEec
Confidence            45788999999999999988 99999999999987                    3344 45777766 599999 9999


Q ss_pred             CCCch-hhhhhCCCc
Q 010225          244 GGKSR-VRELAGFKT  257 (514)
Q Consensus       244 G~~S~-vR~~l~~~~  257 (514)
                      |.||. +.+.+|...
T Consensus       201 G~~s~~l~~~~g~~l  215 (305)
T d1pj5a2         201 GFWGAKIGAMIGMAV  215 (305)
T ss_dssp             GGGHHHHHHTTTCCC
T ss_pred             chhHHHHHHHcCCcc
Confidence            99986 344555443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.24  E-value=1.9e-12  Score=126.01  Aligned_cols=165  Identities=10%  Similarity=0.014  Sum_probs=88.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHH-cCCcHHHHhhh
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKE-IGAWQYVQQHR  134 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-lgl~~~~~~~~  134 (514)
                      .+|+||||||+||++|..|++.+  .+++|+||||++.++..+.+....   +....+.......... ...........
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~--~~~~v~vfEk~~~iGG~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTL---SNKLPVPSTNPILTTEPIVGPAALPVYP   79 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCC---CSCCCSSBCCTTCCCCCBCCSSSCCBCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhC--CCCCEEEEECCCCCCCcccccCCC---CcccCCcccccccccccccccccccccc
Confidence            47999999999999999998752  146999999999886332211110   0000000000000000 00000000000


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                      ...+..+.  .........+........ ....+.+.++.++|.+.++..+ ..|+++++|++++.              
T Consensus        80 s~~y~~l~--~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~yl~~~~~~~~-~~I~~~t~V~~v~~--------------  141 (335)
T d2gv8a1          80 SPLYRDLQ--TNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLL-PFIKLATDVLDIEK--------------  141 (335)
T ss_dssp             CCCCTTCB--CSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGG-GGEECSEEEEEEEE--------------
T ss_pred             cccchhhh--cCCcHhhhhhhhhcCCcc-cccCCchHHHHHHHHHHHHHhh-hcccCceEEEEEEe--------------
Confidence            00000000  000000000110000111 1123678999999999998876 78999999999987              


Q ss_pred             cccccccCCeeEEEeCCCc------EEEeeE-EEecCCCchh
Q 010225          215 ATTLFTKGHLAKLDLSDGT------SLYAKL-VGADGGKSRV  249 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~------~~~ad~-V~AdG~~S~v  249 (514)
                            .++.+.|++.+++      +..+|. |.|+|..|.-
T Consensus       142 ------~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         142 ------KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             ------ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             ------cCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccc
Confidence                  4567777765432      467999 9999998844

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.22  E-value=3.7e-11  Score=115.06  Aligned_cols=39  Identities=36%  Similarity=0.573  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||||++||++|+.|++.    |.+|+||||.+..+
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~----G~~V~lvEK~~~~g   52 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDS----GAKVILIEKEPVIG   52 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            4579999999999999999999996    99999999998765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.16  E-value=9.1e-11  Score=113.10  Aligned_cols=40  Identities=28%  Similarity=0.479  Sum_probs=36.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ....+||+|||||++||++|+.|++.    |++|+||||.+..+
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~----G~~V~llEk~~~~g   59 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDA----GAKVILLEKEPIPG   59 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTT----TCCEEEECSSSSSC
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCC
Confidence            45578999999999999999999996    99999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.15  E-value=2.1e-11  Score=113.95  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~   95 (514)
                      .||+||||||+||++|+.|++.    |+ +|+||||++.++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~----G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA----GITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT----TCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHhC----CCCcEEEEECCCCCC
Confidence            4899999999999999999996    86 699999998775

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.05  E-value=9.7e-11  Score=112.66  Aligned_cols=40  Identities=25%  Similarity=0.410  Sum_probs=36.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ...++||||||||++||++|+.|++.    |.+|+||||.+..+
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~----G~~V~vlEK~~~~g   55 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKA----GANVILVDKAPFSG   55 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSSC
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCC
Confidence            34579999999999999999999996    99999999998764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=2.3e-09  Score=100.76  Aligned_cols=112  Identities=18%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ..++||+||||||+||++|+.|++.   .|++|+|||+.+.++...++...   ......+......+++.+|+      
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~---~G~~V~vlE~~~~~GG~~~~~g~---~~~~~~~~~~~~~~~~~~g~------   98 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKN---PNVQVAIIEQSVSPGGGAWLGGQ---LFSAMIVRKPAHLFLDEIGV------   98 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTS---TTSCEEEEESSSSCCTTTTCCST---TCCCEEEETTTHHHHHHHTC------
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHc---cCCeEEEEecCCCCCCceeecCE---EcCHHHHhhhHHHHHHHcCC------
Confidence            3579999999999999999999863   29999999999887644332111   11123444455555554442      


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEee
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~  200 (514)
                          .+.     ..              .....+...+..+..++.+.+...+ +.+..++.+..+..
T Consensus        99 ----~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  142 (278)
T d1rp0a1          99 ----AYD-----EQ--------------DTYVVVKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIV  142 (278)
T ss_dssp             ----CCE-----EC--------------SSEEEESCHHHHHHHHHHHHHTSTT-EEEEETEEEEEEEE
T ss_pred             ----cee-----cC--------------CccceecccHHHHHHHHHHHHHhCC-CEEEeCCcceeeee
Confidence                110     00              0111122345667777777777665 88999988888876

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=7.9e-10  Score=89.21  Aligned_cols=95  Identities=21%  Similarity=0.271  Sum_probs=76.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +                            
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~----G~~Vtlve~~~~~l----------~----------------------------   58 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGL----GAKTHLFEMFDAPL----------P----------------------------   58 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T----------------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhcc----ccEEEEEeecchhh----------h----------------------------
Confidence            35799999999999999999997    99999999988540          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                              + ..+.+.+.+.+++.| ++++++++|+.+..              
T Consensus        59 --~~------------------------------d-~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~--------------   90 (116)
T d1gesa2          59 --SF------------------------------D-PMISETLVEVMNAEG-PQLHTNAIPKAVVK--------------   90 (116)
T ss_dssp             --TS------------------------------C-HHHHHHHHHHHHHHS-CEEECSCCEEEEEE--------------
T ss_pred             --hc------------------------------c-hhhHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence              00                              0 225566777777777 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                           +.+..+.+++++|+++.+|. |.|.|
T Consensus        91 -----~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 -----NTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             -----cCCcEEEEEECCCCEEEcCEEEEecC
Confidence                 13356789999999999999 99987

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.97  E-value=7.2e-10  Score=105.14  Aligned_cols=37  Identities=41%  Similarity=0.657  Sum_probs=34.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      +||+||||||+||++|+.|++.    |++|+|||+.+.++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR----GTDAVLLESSARLGG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT----TCCEEEECSSSSSBT
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCCc
Confidence            4899999999999999999996    999999999988753

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.9e-10  Score=106.68  Aligned_cols=36  Identities=42%  Similarity=0.660  Sum_probs=33.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ||||||||++||++|+.|++.    |++|+|||+++.++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~----G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS----GLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT----TCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCcc
Confidence            899999999999999999996    999999999998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.93  E-value=5.6e-10  Score=103.51  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=35.2

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++..+.+|||||||++||++|+.|++.    |++|+||||+...
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~----G~~V~vier~~~~   41 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARK----GYSVHILARDLPE   41 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence            455667999999999999999999996    9999999998644

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=8.3e-09  Score=92.43  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC-CCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA-LGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .||||||||||||+.+|+.++|.    |.+|+|||++-. .+...|. +.      ..... .+. +-+..         
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~----G~ktllit~~~~~ig~~~cn-p~------~gg~~-kg~-l~rei---------   59 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK----GVRVGLLTQSLDAVMMPFLP-PK------PPFPP-GSL-LERAY---------   59 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSC-CC------SCCCT-TCH-HHHHC---------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC----CCcEEEEEeccchhcccccC-Cc------cccCC-Ccc-eeeee---------
Confidence            59999999999999999999997    999999998742 2211121 00      00000 000 00000         


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                                 +..+              + .    -..+...+.+.+.+..+++++.+ +|+++..             
T Consensus        60 -----------d~kG--------------~-a----v~a~raQ~k~~l~~~~nL~i~q~-~V~dli~-------------   95 (230)
T d2cula1          60 -----------DPKD--------------E-R----VWAFHARAKYLLEGLRPLHLFQA-TATGLLL-------------   95 (230)
T ss_dssp             -----------CTTC--------------C-C----HHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-------------
T ss_pred             -----------eccc--------------h-h----hhhHHHHHHHHHhhhcCHHHHhc-cceeeEe-------------
Confidence                       0000              0 0    01122223445555567888876 7888876             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                            +++....|.+.+|.++.|+. |.|+|.+..
T Consensus        96 ------e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          96 ------EGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             ------ETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             ------cccceeeEEeccccEEEEeEEEEccCccee
Confidence                  13345568999999999999 999997654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.84  E-value=3.1e-09  Score=102.26  Aligned_cols=40  Identities=28%  Similarity=0.491  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ..+.+|+||||||+||++|+.|++.    |++|+|||+.+.++.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~----G~~V~vlE~~~~~GG   67 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGA----GHQVTVLEASERPGG   67 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH----TCEEEEECSSSSSBT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCCC
Confidence            3456999999999999999999996    999999999987753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.83  E-value=2e-08  Score=82.78  Aligned_cols=98  Identities=15%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+-          .         +                  
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~----g~~Vtvie~~~~~l----------~---------~------------------   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKA----NMHVTLLDTAARVL----------E---------R------------------   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTT----------T---------T------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhh----Ccceeeeeeccccc----------c---------c------------------
Confidence            46899999999999999999996    99999999988551          0         0                  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                         .                              ....+.+.+.+.+++.| +++++|++|+.++..         .+  
T Consensus        74 ---~------------------------------~~~~~~~~~~~~~~~~G-V~i~~~~~v~~i~~~---------~~--  108 (133)
T d1q1ra2          74 ---V------------------------------TAPPVSAFYEHLHREAG-VDIRTGTQVCGFEMS---------TD--  108 (133)
T ss_dssp             ---T------------------------------SCHHHHHHHHHHHHHHT-CEEECSCCEEEEEEC---------TT--
T ss_pred             ---c------------------------------cchhhhhhhhhcccccc-cEEEeCCeEEEEEEe---------CC--
Confidence               0                              01223455666666667 999999999999761         10  


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                            ......+.++||+++.||+ |.|.|
T Consensus       109 ------~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         109 ------QQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             ------TCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ------CceEEEEECCCCCEEECCEEEEeeC
Confidence                  2234558899999999999 99987

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.80  E-value=1e-08  Score=98.75  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..+||||||||++||++|+.|++.    |.+|+||||.+..+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~----G~~V~liEK~~~~~   41 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQK----GLSTIVLSLIPVKR   41 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCGGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCCC
Confidence            458999999999999999999996    99999999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.80  E-value=1.6e-08  Score=81.58  Aligned_cols=95  Identities=17%  Similarity=0.272  Sum_probs=75.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      .+-+|+|||||+.|+=+|..|++.    |.+|+|+|+.+.+.          +                           
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~----G~~Vtiv~~~~~ll----------~---------------------------   59 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARL----GAEVTVLEAMDKFL----------P---------------------------   59 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T---------------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHHc----CCceEEEEeecccC----------C---------------------------
Confidence            346799999999999999999997    99999999988541          0                           


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                         .+                               -.++.+.+.+.+++.| ++++++++|++++.             
T Consensus        60 ---~~-------------------------------d~ei~~~l~~~l~~~G-v~i~~~~~v~~i~~-------------   91 (119)
T d3lada2          60 ---AV-------------------------------DEQVAKEAQKILTKQG-LKILLGARVTGTEV-------------   91 (119)
T ss_dssp             ---TS-------------------------------CHHHHHHHHHHHHHTT-EEEEETCEEEEEEE-------------
T ss_pred             ---cc-------------------------------cchhHHHHHHHHHhcC-ceeecCcEEEEEEE-------------
Confidence               00                               1235567777777777 99999999999987             


Q ss_pred             ccccccccCCeeEEEeCCC---cEEEeeE-EEecC
Q 010225          214 SATTLFTKGHLAKLDLSDG---TSLYAKL-VGADG  244 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG  244 (514)
                             .++.+++++.++   +++.||+ +.|.|
T Consensus        92 -------~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          92 -------KNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             -------CSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             -------eCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                   446677776554   4799999 99987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.79  E-value=2.8e-08  Score=80.38  Aligned_cols=91  Identities=22%  Similarity=0.323  Sum_probs=72.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+-          .         +                  
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~~l----------~---------~------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTA----GVHVSLVETQPRLM----------S---------R------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------T---------T------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcc----cceEEEEeeccccc----------c---------c------------------
Confidence            45899999999999999999996    99999999988540          0         0                  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .                               --..+.+.+.+.+++.| |+++++++|+++..              
T Consensus        69 --~-------------------------------~~~~~~~~~~~~l~~~G-V~i~~~~~v~~~~~--------------  100 (121)
T d1d7ya2          69 --A-------------------------------APATLADFVARYHAAQG-VDLRFERSVTGSVD--------------  100 (121)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHTTT-CEEEESCCEEEEET--------------
T ss_pred             --c-------------------------------CCHHHHHHHHHHHHHCC-cEEEeCCEEEEEeC--------------
Confidence              0                               01235567778888887 99999999998853              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADG  244 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG  244 (514)
                              +  .+.++||+++.||+ |.|.|
T Consensus       101 --------~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 --------G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             --------T--EEEETTSCEEECSEEEECSC
T ss_pred             --------C--EEEECCCCEEECCEEEEeeC
Confidence                    3  36678999999999 99987

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.8e-08  Score=82.37  Aligned_cols=99  Identities=18%  Similarity=0.241  Sum_probs=76.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||++|+=+|..|++.....|.+|+++|+.+.+-.                                       
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~---------------------------------------   78 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG---------------------------------------   78 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT---------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc---------------------------------------
Confidence            47999999999999888886310002889999999885400                                       


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                       ..                             + ...+.+.+.+.+++.| ++++++++|++++.               
T Consensus        79 -~~-----------------------------~-~~~~~~~~~~~l~~~G-V~~~~~~~V~~i~~---------------  111 (137)
T d1m6ia2          79 -KI-----------------------------L-PEYLSNWTMEKVRREG-VKVMPNAIVQSVGV---------------  111 (137)
T ss_dssp             -TT-----------------------------S-CHHHHHHHHHHHHTTT-CEEECSCCEEEEEE---------------
T ss_pred             -cc-----------------------------C-CHHHHHHHHHHHHhCC-cEEEeCCEEEEEEe---------------
Confidence             00                             0 1235567788888888 99999999999986               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                           +++.+.++++||+++.||+ |.|.|.
T Consensus       112 -----~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         112 -----SSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             -----ETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             -----cCCEEEEEECCCCEEECCEEEEeecC
Confidence                 4577889999999999999 999983

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2.3e-09  Score=98.60  Aligned_cols=41  Identities=32%  Similarity=0.387  Sum_probs=37.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      |+.+|||||||||++||++|+.|++.    |++|+|||+++.++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~----G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD----GKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEcCCCCCCc
Confidence            66799999999999999999999996    999999999998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.75  E-value=4.3e-08  Score=78.73  Aligned_cols=93  Identities=13%  Similarity=0.192  Sum_probs=73.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+-          .                            
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~----g~~Vtlv~~~~~il----------~----------------------------   59 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRL----GIDSYIFARGNRIL----------R----------------------------   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSSSSC----------T----------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhc----cccceeeehhcccc----------c----------------------------
Confidence            45799999999999999999997    99999999988540          0                            


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus        60 --~~-------------------------------d~~~~~~~~~~l~~~g-V~i~~~~~v~~i~~--------------   91 (117)
T d1onfa2          60 --KF-------------------------------DESVINVLENDMKKNN-INIVTFADVVEIKK--------------   91 (117)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             --cc-------------------------------cHHHHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence              00                               1346677788888877 99999999999986              


Q ss_pred             cccccccCCeeEEEeCCCcEEE-eeE-EEe
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLY-AKL-VGA  242 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~-ad~-V~A  242 (514)
                           ..++.+.+++++|+++. +|. |-|
T Consensus        92 -----~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          92 -----VSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -----SSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             -----cCCCeEEEEECCCCEEEeCCEEEEe
Confidence                 13356889999998775 698 765

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=5.1e-09  Score=100.94  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+++||+|||+|+|||++|+.+++.    |.+|+|+||.+..+
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~----G~~V~lleK~~~~g   43 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQS----GQTCALLSKVFPTR   43 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHT----TCCCEEECSSCGGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHc----CCeEEEEeCCCCCC
Confidence            4679999999999999999999996    99999999988664

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.73  E-value=4.2e-08  Score=78.93  Aligned_cols=99  Identities=12%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+|+|||||++|+-+|..|+++. ..|.+|+|+|+.+.+.                                    .  
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~-~~g~~Vtli~~~~~il------------------------------------~--   58 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYK-ARGGQVDLAYRGDMIL------------------------------------R--   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHS-CTTCEEEEEESSSSSS------------------------------------T--
T ss_pred             CCeEEEECCChHHHHHHHHhHhhc-ccccccceeccccccc------------------------------------c--
Confidence            357999999999999997654320 0388999999987541                                    0  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -.++.+.+.+.+++.| ++++++++|++++.              
T Consensus        59 --~~-------------------------------d~~~~~~~~~~l~~~G-I~v~~~~~v~~i~~--------------   90 (117)
T d1feca2          59 --GF-------------------------------DSELRKQLTEQLRANG-INVRTHENPAKVTK--------------   90 (117)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-EEEEETCCEEEEEE--------------
T ss_pred             --cc-------------------------------cchhhHHHHHHHhhCc-EEEEcCCEEEEEEE--------------
Confidence              00                               0235677788888887 99999999999986              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                           +.++...+.+++|+++.||+ |.|.|.
T Consensus        91 -----~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          91 -----NADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             -----CCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                 12355678999999999999 999984

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.2e-08  Score=97.34  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .++||+|||+|+|||++|+.+++.+  .|.+|+|+||....+
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~--~g~~V~lleK~~~~~   43 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQAN--PNAKIALISKVYPMR   43 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHC--TTCCEEEEESSCGGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhC--CCCEEEEEECCCCCC
Confidence            4689999999999999999998752  378999999987553

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.71  E-value=1.2e-08  Score=90.03  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=76.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (514)
                      ...+||+||||||+|+++|+.|+|.    |++|+|+|+......          ...+                  .+..
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~----g~~v~vie~~~~~~~----------~~~~------------------~~~~   50 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARA----ELKPLLFEGWMANDI----------APGG------------------QLTT   50 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTTB----------CTTC------------------GGGG
T ss_pred             cccceEEEECCCHHHHHHHHHHHHc----CCcEEEEEeeccccc----------cccc------------------cccc
Confidence            3468999999999999999999997    999999998775410          0000                  0000


Q ss_pred             hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (514)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~  212 (514)
                           .....  +..             ..+  ..+....|...+.+++++.+ +++..+ +|++++.            
T Consensus        51 -----~~~~~--~~~-------------~~~--~~~~~~el~~~~~~q~~~~g-~~i~~~-~V~~~~~------------   94 (192)
T d1vdca1          51 -----TTDVE--NFP-------------GFP--EGILGVELTDKFRKQSERFG-TTIFTE-TVTKVDF------------   94 (192)
T ss_dssp             -----CSEEC--CST-------------TCT--TCEEHHHHHHHHHHHHHHTT-CEEECC-CCCEEEC------------
T ss_pred             -----chhhh--ccc-------------ccc--ccccchHHHHHHHHHHHhhc-ceeeee-eEEeccc------------
Confidence                 00000  000             000  11456788888999998887 888876 6888865            


Q ss_pred             CccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                              .+....+.. +..++.+|. +.+.|.
T Consensus        95 --------~~~~~~v~~-~~~~~~~~~~~~a~g~  119 (192)
T d1vdca1          95 --------SSKPFKLFT-DSKAILADAVILAIGA  119 (192)
T ss_dssp             --------SSSSEEEEC-SSEEEEEEEEEECCCE
T ss_pred             --------ccCcEEecc-cceeeeeeeEEEEeee
Confidence                    334455654 344688999 999986

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.67  E-value=9.7e-08  Score=77.38  Aligned_cols=92  Identities=21%  Similarity=0.221  Sum_probs=70.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+-                             +         
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~----g~~Vtlie~~~~~l-----------------------------~---------   67 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKA----GKKVTVIDILDRPL-----------------------------G---------   67 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT-----------------------------T---------
T ss_pred             CCEEEEECChHHHHHHHHHhhcc----ceEEEEEEecCccc-----------------------------c---------
Confidence            45899999999999999999996    99999999987440                             0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ..                             + -..+.+.+.+.+++.| +++++++++++++.              
T Consensus        68 --~~-----------------------------~-d~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~--------------  100 (123)
T d1nhpa2          68 --VY-----------------------------L-DKEFTDVLTEEMEANN-ITIATGETVERYEG--------------  100 (123)
T ss_dssp             --TT-----------------------------C-CHHHHHHHHHHHHTTT-EEEEESCCEEEEEC--------------
T ss_pred             --cc-----------------------------c-chhhHHHHHHHhhcCC-eEEEeCceEEEEEc--------------
Confidence              00                             0 0235567777788877 99999999999974              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEe
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGA  242 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~A  242 (514)
                            + +.+.....||+++.||+ |.|
T Consensus       101 ------~-~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2         101 ------D-GRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             ------S-SBCCEEEESSCEEECSEEEEC
T ss_pred             ------C-CCEEEEEeCCCEEECCEEEEE
Confidence                  2 23333356888999999 765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.67  E-value=1.3e-07  Score=75.83  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+|+|||||+.|+-+|..|...+ .+|.+|+|+|+.+.+-                                    .  
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~-~~~~~Vtli~~~~~iL------------------------------------~--   60 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYK-PKDGQVTLCYRGEMIL------------------------------------R--   60 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHC-CTTCEEEEEESSSSSS------------------------------------T--
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcc-cCCcEEEEEeccchhh------------------------------------c--
Confidence            357999999999999997666531 1367899999987540                                    0  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -..+.+.+.+.+++.| ++++++++|++++.              
T Consensus        61 --~~-------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~ie~--------------   92 (117)
T d1aoga2          61 --GF-------------------------------DHTLREELTKQLTANG-IQILTKENPAKVEL--------------   92 (117)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------
T ss_pred             --cc-------------------------------chHHHHHHHHHHHhcC-cEEEcCCEEEEEEE--------------
Confidence              00                               0235567778888887 99999999999976              


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEe
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGA  242 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~A  242 (514)
                           ..++...+++++|+++.||+ |-|
T Consensus        93 -----~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          93 -----NADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEEC
T ss_pred             -----cCCCeEEEEECCCcEEEeCEEEEe
Confidence                 13356789999999999999 765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.63  E-value=1.4e-07  Score=75.77  Aligned_cols=90  Identities=16%  Similarity=0.295  Sum_probs=69.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                             .         
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~----G~~Vtlve~~~~il-----------------------------~---------   59 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANF----GTKVTILEGAGEIL-----------------------------S---------   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS-----------------------------T---------
T ss_pred             CCeEEEECCCccceeeeeeeccc----ccEEEEEEecceec-----------------------------c---------
Confidence            45899999999999999999997    99999999988540                             0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                              + .++.+.+.+.+++.| ++++++++|++++.              
T Consensus        60 --~~------------------------------d-~~~~~~l~~~l~~~G-I~i~~~~~v~~i~~--------------   91 (117)
T d1ebda2          60 --GF------------------------------E-KQMAAIIKKRLKKKG-VEVVTNALAKGAEE--------------   91 (117)
T ss_dssp             --TS------------------------------C-HHHHHHHHHHHHHTT-CEEEESEEEEEEEE--------------
T ss_pred             --cc------------------------------c-chhHHHHHHHHHhcC-CEEEcCCEEEEEEE--------------
Confidence              00                              0 235567778888887 99999999999986              


Q ss_pred             cccccccCCeeEEEeC-CC--cEEEeeE-E
Q 010225          215 ATTLFTKGHLAKLDLS-DG--TSLYAKL-V  240 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g--~~~~ad~-V  240 (514)
                            .++.+.+.+. +|  +++.||. |
T Consensus        92 ------~~~~~~v~~~~~g~~~~i~~D~Vl  115 (117)
T d1ebda2          92 ------REDGVTVTYEANGETKTIDADYVL  115 (117)
T ss_dssp             ------ETTEEEEEEEETTEEEEEEESEEE
T ss_pred             ------cCCEEEEEEEeCCCEEEEEeEEEE
Confidence                  3345555553 44  3689998 5

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.62  E-value=2e-08  Score=80.55  Aligned_cols=35  Identities=23%  Similarity=0.576  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~----g~~Vtlve~~~~i   56 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL----GAQVSVVEARERI   56 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhc----ccceEEEeeeccc
Confidence            5799999999999999999997    9999999998854

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=2.7e-08  Score=86.06  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=36.2

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....+.+|+|||||||||++|+.|++.    |++|+|||+.+.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~----G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAAR----GHQVTLFDAHSEI   78 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhh----ccceEEEeccCcc
Confidence            345568999999999999999999995    9999999999977

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.5e-07  Score=76.07  Aligned_cols=94  Identities=13%  Similarity=0.311  Sum_probs=70.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+++|||||+.|+=+|..|++.    |.+|+|+|+.+.+-                             .         
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~l----G~~Vtii~~~~~~l-----------------------------~---------   60 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRL----GSKVTVVEFQPQIG-----------------------------A---------   60 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS-----------------------------S---------
T ss_pred             CCeEEEECCCchHHHHHHHHHhh----CcceeEEEeccccc-----------------------------h---------
Confidence            45899999999999999999997    99999999988550                             0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -.++.+.+.+.+++.| ++++++++|++++..             
T Consensus        61 --~~-------------------------------d~ei~~~l~~~l~~~G-V~i~~~~~v~~v~~~-------------   93 (122)
T d1v59a2          61 --SM-------------------------------DGEVAKATQKFLKKQG-LDFKLSTKVISAKRN-------------   93 (122)
T ss_dssp             --SS-------------------------------CHHHHHHHHHHHHHTT-CEEECSEEEEEEEEE-------------
T ss_pred             --hh-------------------------------hhhhHHHHHHHHHhcc-ceEEeCCEEEEEEEe-------------
Confidence              00                               0335577778888877 999999999999861             


Q ss_pred             cccccccCCeeEEEeCCC-----cEEEeeE-EEe
Q 010225          215 ATTLFTKGHLAKLDLSDG-----TSLYAKL-VGA  242 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-----~~~~ad~-V~A  242 (514)
                           +++..+.+.+.++     .+++||+ +.|
T Consensus        94 -----~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          94 -----DDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             -----TTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             -----CCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                 1234566665543     2689999 765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.57  E-value=1.3e-07  Score=76.55  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (514)
                      .+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                .+.                     
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~----g~~Vtlv~~~~~l~----------------~~d---------------------   71 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA----GYHVKLIHRGAMFL----------------GLD---------------------   71 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT----TCEEEEECSSSCCT----------------TCC---------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcc----cceEEEEecccccc----------------CCC---------------------
Confidence            5799999999999999999996    99999999887440                000                     


Q ss_pred             cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (514)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~  215 (514)
                                                         ..+.+.+.+.+++.| +++++++++++++.               
T Consensus        72 -----------------------------------~~~~~~~~~~l~~~G-V~~~~~~~v~~~~~---------------  100 (122)
T d1xhca2          72 -----------------------------------EELSNMIKDMLEETG-VKFFLNSELLEANE---------------  100 (122)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTT-EEEECSCCEEEECS---------------
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-cEEEeCCEEEEEeC---------------
Confidence                                               123445666677777 99999999998854               


Q ss_pred             ccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225          216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGG  245 (514)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~  245 (514)
                             +.+   +.+++.+.+|+ |.|.|.
T Consensus       101 -------~~v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         101 -------EGV---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -------SEE---EETTEEEECSCEEEECCE
T ss_pred             -------CEE---EeCCCEEECCEEEEEEEe
Confidence                   332   34777899999 999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.5e-07  Score=82.64  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=74.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (514)
                      +..||+||||||+|+++|+.|+|.    |.+|+|||+....+.               ..                  . 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~----g~~v~iie~~~~~g~---------------~~------------------~-   45 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGMEKGGQ---------------LT------------------T-   45 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----TCCCEEECCSSTTGG---------------GG------------------G-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CCceEEEEeeccccc---------------cc------------------c-
Confidence            457999999999999999999997    999999998764310               00                  0 


Q ss_pred             hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (514)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~  213 (514)
                       ...+.     +     ...+.     .     .+....+...+.+.+.+.+ +++.++ +|+.+..             
T Consensus        46 -~~~i~-----~-----~~~~~-----~-----~~~~~~~~~~~~~~~~~~~-~~~~~~-~V~~~~~-------------   89 (190)
T d1trba1          46 -TTEVE-----N-----WPGDP-----N-----DLTGPLLMERMHEHATKFE-TEIIFD-HINKVDL-------------   89 (190)
T ss_dssp             -CSBCC-----C-----STTCC-----S-----SCBHHHHHHHHHHHHHHTT-CEEECC-CEEEEEC-------------
T ss_pred             -cchhh-----h-----hhccc-----c-----ccchHHHHHHHHHHHHhcC-cEEecc-eeEEEec-------------
Confidence             00000     0     00000     0     1245667777888888887 777776 6888875             


Q ss_pred             ccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225          214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK  246 (514)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~  246 (514)
                             .++...+...+ ..+.++. |.+.|..
T Consensus        90 -------~~~~~~v~~~~-~~~~~~~viva~G~~  115 (190)
T d1trba1          90 -------QNRPFRLNGDN-GEYTCDALIIATGAS  115 (190)
T ss_dssp             -------SSSSEEEEESS-CEEEEEEEEECCCEE
T ss_pred             -------CCCcEEEEEee-eeEeeeeeeeeccee
Confidence                   34556666544 4588999 9999853

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=7.5e-08  Score=91.35  Aligned_cols=38  Identities=32%  Similarity=0.626  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+++||||||+|+|||++|+.+++.    | +|+||||.+..+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~----g-~V~llEK~~~~g   42 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQ----H-QVIVLSKGPVTE   42 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTT----S-CEEEECSSCTTC
T ss_pred             cccCCEEEECccHHHHHHHHHhhcC----C-CEEEEECCCCCC
Confidence            3569999999999999999999884    7 999999998654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.54  E-value=7.4e-08  Score=91.69  Aligned_cols=43  Identities=35%  Similarity=0.428  Sum_probs=36.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      ..++||+||||||+||++|+.|++..  .|++|+|||+++.++..
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~--~~~~~~~~~~~~~~~~~   90 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGG   90 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhC--CCCeEEEEEcCCCCcce
Confidence            34689999999999999999999521  38999999999887543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=7.1e-08  Score=93.49  Aligned_cols=43  Identities=21%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      ..++||+|||+|++||++|+.|+++...+|.+|+||||.+..+
T Consensus        19 ~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          19 VVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             EEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            4578999999999999999999752112499999999987664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.52  E-value=2e-07  Score=75.55  Aligned_cols=95  Identities=9%  Similarity=0.149  Sum_probs=74.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +-+++|||||..|+=+|..|++.    |.+|+|+|+.+.+-                             .         
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~----G~~Vtive~~~~il-----------------------------~---------   63 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTL----GSRLDVVEMMDGLM-----------------------------Q---------   63 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSSSSS-----------------------------T---------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcC----CCEEEEEEeecccc-----------------------------c---------
Confidence            45899999999999999999997    99999999988551                             0         


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -.++.+.|.+.+++.| ++++.++++++++.              
T Consensus        64 --~~-------------------------------d~~~~~~l~~~l~~~g-v~~~~~~~v~~v~~--------------   95 (125)
T d1ojta2          64 --GA-------------------------------DRDLVKVWQKQNEYRF-DNIMVNTKTVAVEP--------------   95 (125)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHGGGE-EEEECSCEEEEEEE--------------
T ss_pred             --cc-------------------------------hhhHHHHHHHHHHHcC-cccccCcEEEEEEE--------------
Confidence              00                               1235677888888887 99999999999986              


Q ss_pred             cccccccCCeeEEEeC--CC--cEEEeeE-EEecCC
Q 010225          215 ATTLFTKGHLAKLDLS--DG--TSLYAKL-VGADGG  245 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g--~~~~ad~-V~AdG~  245 (514)
                            .++++.+.+.  +|  ++++||+ +.|.|.
T Consensus        96 ------~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          96 ------KEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             ------ETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             ------cCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence                  3345555543  33  3699999 999984

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=2.2e-08  Score=90.91  Aligned_cols=39  Identities=26%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      |.++|||+||||||+|+++|+.|++.    |.+|+|||+++..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~----G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCc
Confidence            45789999999999999999999997    9999999998755

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=7e-07  Score=77.49  Aligned_cols=115  Identities=20%  Similarity=0.266  Sum_probs=74.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      .|||+||||||+|+++|+.+++.    |.+|+|||++...                 .                 +..  
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~----G~~v~iie~~~gg-----------------~-----------------~~~--   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK----GIRTGLMGERFGG-----------------Q-----------------ILD--   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSTTG-----------------G-----------------GGG--
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc----CCeEEEEEEecCC-----------------c-----------------ccc--
Confidence            38999999999999999999997    9999999975311                 0                 000  


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        ..   ...+...             .   ..+.-..+...+...+++.+ .++.....+..+...         ..  
T Consensus        41 --~~---~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~--   87 (184)
T d1fl2a1          41 --TV---DIENYIS-------------V---PKTEGQKLAGALKVHVDEYD-VDVIDSQSASKLIPA---------AV--   87 (184)
T ss_dssp             --CC---EECCBTT-------------B---SSEEHHHHHHHHHHHHHTSC-EEEECSCCEEEEECC---------SS--
T ss_pred             --cc---cceeccc-------------c---chhhhHHHHHHHHHHhhhee-ceeeccceeeeeccc---------cc--
Confidence              00   0000000             0   01344667777788888776 788888778777641         00  


Q ss_pred             cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225          215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR  248 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~  248 (514)
                            ..........++.++.++. +.+.|....
T Consensus        88 ------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  116 (184)
T d1fl2a1          88 ------EGGLHQIETASGAVLKARSIIVATGAKLP  116 (184)
T ss_dssp             ------TTCCEEEEETTSCEEEEEEEEECCCEEEE
T ss_pred             ------ccceeeeeeecceeeeccccccccccccc
Confidence                  2233445556667899999 999886443

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.45  E-value=3.9e-08  Score=88.80  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|||+||||||||+++|+.|++.    |++|+|||+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~----G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL----GLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH----TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccCC
Confidence            589999999999999999999997    9999999998754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.8e-07  Score=72.10  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL----GSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcC----CcEEEEEeecccc
Confidence            5899999999999999999997    9999999998854

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.5e-08  Score=92.57  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=36.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~   97 (514)
                      .++.+|||||||++||++|+.|+++    |++|+|||+++.++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~----G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT----TCEEEEECSSSSSBTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCccc
Confidence            3567899999999999999999996    9999999999988654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.40  E-value=6.1e-07  Score=72.33  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...|+|||||+.|+=+|..|++.    |.+|+++|+.+.+
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~----g~~vt~i~~~~~~   57 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNAT----GRRTVMLVRTEPL   57 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----chhheEeeccchh
Confidence            35899999999999999999996    9999999998754

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.7e-07  Score=82.55  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..++++|||||++|+.+|..|.+.+  ...+|++|++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~--~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARD--PGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHS--TTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC--CCCcEEEEeCCCCC
Confidence            45689999999999999999998852  13579999987754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.8e-06  Score=69.55  Aligned_cols=97  Identities=19%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (514)
                      +.+++|||||+.|+=+|..|++.    |.+|+|++++....                                       
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~l----G~~Vtii~~~~~l~---------------------------------------   56 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR---------------------------------------   56 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSST---------------------------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhc----CCeEEEEEechhhc---------------------------------------
Confidence            34799999999999999999998    99999999754220                                       


Q ss_pred             ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (514)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~  214 (514)
                        .+                               -.++.+.+.+.+++.| ++++++++|+.++.         ..+. 
T Consensus        57 --~~-------------------------------D~~~~~~l~~~l~~~G-v~i~~~~~v~~~~~---------~~~~-   92 (122)
T d1h6va2          57 --GF-------------------------------DQDMANKIGEHMEEHG-IKFIRQFVPTKIEQ---------IEAG-   92 (122)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-EEEEESCEEEEEEE---------EECS-
T ss_pred             --cC-------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE---------ecCC-
Confidence              00                               0335677888888888 99999999999976         1111 


Q ss_pred             cccccccCCeeEEEeCCC---c--EEEeeE-EEecC
Q 010225          215 ATTLFTKGHLAKLDLSDG---T--SLYAKL-VGADG  244 (514)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g---~--~~~ad~-V~AdG  244 (514)
                            ....+.+.+.++   +  ...+|. +.|.|
T Consensus        93 ------~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          93 ------TPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             ------TTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             ------CccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                  224455554432   2  467899 88876

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.39  E-value=7.8e-08  Score=86.47  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|||+||||||+|+++|+.++++    |.+|+|||++...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~----G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCC
Confidence            579999999999999999999997    9999999998765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.38  E-value=6.4e-08  Score=87.75  Aligned_cols=38  Identities=42%  Similarity=0.621  Sum_probs=34.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|||+||||||+||++|+.|++.    |++|+|||+.+.+
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~----G~~V~viE~~~~~   41 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSCS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            3479999999999999999999997    9999999998755

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1e-07  Score=85.53  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|||+||||||+|+++|..|++.    |.+|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~----G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEeccC
Confidence            469999999999999999999997    99999999865

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=1.1e-07  Score=89.86  Aligned_cols=36  Identities=31%  Similarity=0.600  Sum_probs=34.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      +||||||||++||++|+.|++.    |++|+|+|+++.++
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~----g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG----TCCEEEECSSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhC----CCcEEEEECCCCcc
Confidence            7999999999999999999996    99999999999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.34  E-value=7e-07  Score=72.14  Aligned_cols=36  Identities=14%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.+++|||||..|+=+|..|++.    |.+|+|+|+.+.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~----G~~Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRI----GSEVTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHH----TCEEEEECSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhc----CCeEEEEEEcccc
Confidence            45899999999999999999997    9999999998855

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.32  E-value=1.8e-07  Score=88.30  Aligned_cols=37  Identities=32%  Similarity=0.504  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      .+|+||||||+||++|+.|++.    |++|+|||+++.++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIH----GLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT----SCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCCEEEEeCCCCCcC
Confidence            3699999999999999999996    999999999988753

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.5e-07  Score=85.54  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|||+||||||+|+++|+.+++.    |++|+|||+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~----G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF----DKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG----CCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            69999999999999999999997    9999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.29  E-value=1.8e-07  Score=85.14  Aligned_cols=51  Identities=12%  Similarity=0.064  Sum_probs=39.0

Q ss_pred             EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEec
Q 010225          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGAD  243 (514)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~Ad  243 (514)
                      .+.++...+..+|.+.+++.| ++|+.+ +|++++.                               .....+|+ |+|+
T Consensus       136 ~~~id~~~~~~~L~~~~~~~G-~~~~~~-~v~~l~~-------------------------------~~~~~~d~vVnct  182 (246)
T d1kifa1         136 SLILEGRKYLQWLTERLTERG-VKFFLR-KVESFEE-------------------------------VARGGADVIINCT  182 (246)
T ss_dssp             EEEECHHHHHHHHHHHHHHTT-CEEEEC-CCCCHHH-------------------------------HHHTTCSEEEECC
T ss_pred             ceEEcHHHHHHHHHHHHHHCC-CEEEEe-EeCCHHH-------------------------------hccCCCCEEEECC
Confidence            367899999999999999998 787765 5766642                               01133789 9999


Q ss_pred             CCCch
Q 010225          244 GGKSR  248 (514)
Q Consensus       244 G~~S~  248 (514)
                      |.++.
T Consensus       183 G~~a~  187 (246)
T d1kifa1         183 GVWAG  187 (246)
T ss_dssp             GGGHH
T ss_pred             ccccc
Confidence            99884

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.23  E-value=3.1e-07  Score=89.31  Aligned_cols=39  Identities=33%  Similarity=0.458  Sum_probs=35.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..+|||||||+|++|+++|..|++.    |++|+|||++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~----G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGA----GYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhC----CCeEEEEecCCCC
Confidence            35689999999999999999999996    9999999998644

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.23  E-value=2.7e-07  Score=82.79  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|||+||||||+|+++|..+++.    |.+|+|||+...
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~----G~kV~vIEk~~~   37 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKGNL   37 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCEEEEEecCCC
Confidence            369999999999999999999997    999999999763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.22  E-value=2.4e-07  Score=84.09  Aligned_cols=40  Identities=25%  Similarity=0.378  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCC---CCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMP---LTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~---~~~g~~V~viE~~~~~   94 (514)
                      +++|+|||||||||++|+.|++++   ...+++|+|||+.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            478999999999999999999861   0013689999999977

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.8e-07  Score=81.81  Aligned_cols=35  Identities=34%  Similarity=0.535  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|||+||||||+|+++|..+++.    |.+|+|||++..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~----G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL----GARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCEEEEEeccCC
Confidence            69999999999999999999997    999999998764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.18  E-value=3.1e-07  Score=82.48  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +.+|||+||||||+|+++|..+++.    |.+|+|+|++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~----G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCC
Confidence            4679999999999999999999997    99999999875

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.17  E-value=6.5e-07  Score=84.99  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=34.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~   96 (514)
                      ..+|+|||||++||++|+.|++.    |++|+|+|+++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~----G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC----CCCEEEEECCCCCcC
Confidence            45799999999999999999996    999999999998863

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.15  E-value=5.9e-07  Score=78.78  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=32.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~   94 (514)
                      ..+|+||||||+||++|+.|+++    |+ +|+||||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~----G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARL----GYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT----TCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHC----CCCeEEEEEecCcc
Confidence            45799999999999999999997    88 49999998865

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.13  E-value=1.1e-06  Score=79.68  Aligned_cols=39  Identities=23%  Similarity=0.338  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .....+|+||||||+|+++|..|++.    |++|+|+|+.+.+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~----G~~v~l~E~~~~~   84 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMES----GYTVHLTDTAEKI   84 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSST
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHh----ccceeeEeecccc
Confidence            45678999999999999999999996    9999999999876

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.12  E-value=7.7e-07  Score=80.35  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||||||++|..|++.+  .|++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~--~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHH--SRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--SSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcC--CCCeEEEEeCCCCC
Confidence            47999999999999999997742  37899999999876

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.08  E-value=2.4e-06  Score=75.12  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|+|||||++|+.+|..|++..  .+.+|+|+|+++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~--~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLH--PDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--TTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcC--CCCeEEEEeCCCcc
Confidence            36999999999999999998853  35789999998755

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.05  E-value=6.4e-06  Score=69.97  Aligned_cols=33  Identities=36%  Similarity=0.584  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +|+|||||++|+-+|..|++     +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-----~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-----TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-----TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-----CCCEEEEeccccc
Confidence            69999999999999999987     6799999988755

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=1.4e-06  Score=80.31  Aligned_cols=33  Identities=39%  Similarity=0.622  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      |||+||||||+|+++|..+++.    |.+|+|+|++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~----G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH----NAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC----CCeEEEEecCC
Confidence            8999999999999999999997    99999999865

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.01  E-value=1.8e-06  Score=78.02  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +.|||+||||||||+++|..+++.+   +.+|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g---~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLY---KKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTS---CCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC---CCEEEEEEeecc
Confidence            5799999999999999999999971   356999998754

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.95  E-value=1.5e-06  Score=78.85  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~   94 (514)
                      ++|||+||||||||+++|+.+++.    |. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~----g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL----HKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH----HCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc----CCCEEEEEEEeccC
Confidence            689999999999999999999997    64 69999988754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.88  E-value=4.8e-06  Score=76.55  Aligned_cols=40  Identities=33%  Similarity=0.469  Sum_probs=36.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+++|||+||||||+|+.+|+.|++.    |.+|+|+|+.+..
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~~----G~kv~vve~~~~l   77 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRAM----GGRQLIVDRWPFL   77 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCcc
Confidence            355789999999999999999999997    9999999998866

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.88  E-value=3.4e-06  Score=81.77  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-..+||||||+|++|+.+|+.|+++    |++|+|||++.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaea----G~~VlvLEaG~   40 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQA----GIPTQIVEMGR   40 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            34579999999999999999999996    99999999964

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.86  E-value=4.2e-06  Score=72.45  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=28.9

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +.+|+|||||++|+-+|..|++.    |.+|.|++..+.
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~----g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQA----GYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH----TCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhc----CCceEEEEEecc
Confidence            45699999999999999999996    777777765543

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.83  E-value=4.5e-06  Score=80.68  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+||+||||+|++|+.+|..|++.    |++|+|||++.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~----g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEA----GKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC----CCeEEEEEccC
Confidence            369999999999999999999996    89999999984

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.76  E-value=1e-05  Score=78.99  Aligned_cols=39  Identities=28%  Similarity=0.592  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .++||+||||||++|+.+|..|++.+   +++|+|||++...
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~---~~~VLlLEaG~~~   60 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENP---KIKVLVIEKGFYE   60 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTST---TCCEEEEESSCCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCC---CCeEEEEcCCCCC
Confidence            35799999999999999999999972   4899999999743

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.76  E-value=3.3e-05  Score=66.01  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|||||++|+.+|..|++.+  ...+|+|||+++..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~--~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLAD--PSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcC--CCCcEEEEECCCcc
Confidence            37999999999999999999962  23689999998743

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.74  E-value=7.1e-06  Score=79.31  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .||||||+|++|+.+|+.|++.    |++|+|||++..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea----G~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA----GVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC----cCeEEEEecCCC
Confidence            5999999999999999999996    999999999743

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.73  E-value=8.5e-06  Score=79.44  Aligned_cols=39  Identities=28%  Similarity=0.487  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .++||+||||||.+|+.+|..|++.   .+++|+|||++...
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~---~~~~VLvLEaG~~~   53 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTEN---PNISVLVIESGSYE   53 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS---TTCCEEEEESSCCC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHC---CCCeEEEECCCCCC
Confidence            3569999999999999999999987   25899999998643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.4e-05  Score=72.03  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|+||||||+|+++|+.+++++. ++++|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~-~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHP-ETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCT-TTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCC-CCCEEEEEecCC
Confidence            479999999999999998876521 468999999865

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.63  E-value=9.9e-06  Score=77.86  Aligned_cols=38  Identities=29%  Similarity=0.566  Sum_probs=33.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ....||+||||+|++|+.+|..|++     .++|+|||++..+
T Consensus        23 ~~~~YD~IIVGsG~aG~vlA~rLae-----~~kVLvLEaG~~~   60 (351)
T d1ju2a1          23 LEGSYDYVIVGGGTSGCPLAATLSE-----KYKVLVLERGSLP   60 (351)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT-----TSCEEEECSSBCG
T ss_pred             ccCCccEEEECccHHHHHHHHHhcC-----CCCEEEEecCCCC
Confidence            3456999999999999999999998     4899999999743

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.38  E-value=0.00062  Score=56.56  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             CccEEEE--CCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVV--GGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIV--GgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .-.|+|+  |||..|+.+|..|++.    |.+|+|+|+.+.+
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~----G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATA----GHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHc----CCeEEEEecCCcc
Confidence            3456665  9999999999999997    9999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.33  E-value=5.3e-05  Score=65.06  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .-+|+|||||++|+-+|..|++.    |.+|+|++..+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~----g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRAS----GWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc----CCceEEEEecCcc
Confidence            34899999999999999999997    8888888877644

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.71  E-value=0.00061  Score=58.10  Aligned_cols=33  Identities=36%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|..|+++|..|++.    |++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~----G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK----GQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            4699999999999999999996    99999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.001  Score=49.83  Aligned_cols=36  Identities=14%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|+|.|.+|+++|..|.+.    |.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~----g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLAR----GVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT----TCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC----CCEEEEeeCCcCc
Confidence            34799999999999999999996    9999999987754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.38  E-value=0.0012  Score=55.87  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ..|+|||||-+|..+|..|++.    |++|+|+||...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~----g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS----GIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT----TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEECChH
Confidence            4799999999999999999996    999999999874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0014  Score=54.65  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ++|+|||+|-.|..+|..|++.    |++|++++|.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~----G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ----GHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCceEEEEcCHHH
Confidence            4699999999999999999997    9999999998743

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.31  E-value=0.0013  Score=52.86  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +.|+|+|+|..|..+|..|.+.    |++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~----g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK----GHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCCcceecCChh
Confidence            3699999999999999999986    999999999874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0049  Score=51.07  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             CCccEEEECCCHHHHHHHHHhccC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASM   77 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~   77 (514)
                      ...+|+|||||.+|+-+|..|++.
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~   51 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQP   51 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCC
T ss_pred             cCCceEEEcCchhHHHHHHHHHHc
Confidence            346899999999999999999997

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.025  Score=44.46  Aligned_cols=36  Identities=33%  Similarity=0.540  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||-+.+-.|+.|++.    .-+|+|+-|++.+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~----a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT----BSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhcc----CCceEEEeccccc
Confidence            46899999999999999999997    7799999988744

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=54.61  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||+|..|...|..++++    |++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~----G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT----GHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence            4799999999999999999996    999999998874

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.69  E-value=0.0052  Score=50.55  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      ++.++.+|+|||+|-.|.++|+.|+..    ++ ++.|+|.++.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~----~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALR----ELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhC----CCceEEEEEeccc
Confidence            466788999999999999999998886    54 7999997763

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.67  E-value=0.0052  Score=50.75  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+.+|+|||+|.+|+.++..+.+.    |-.|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l----GA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL----GAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC----CCEEEEEeCcH
Confidence            457899999999999999999998    99999999876

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.60  E-value=0.0061  Score=51.04  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+.+|+|||||.+|+.+|..+.+.    |-.|+++|.+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l----GA~V~v~D~~~~~   64 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL----GAVVMATDVRAAT   64 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCSTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc----CCEEEEEeccHHH
Confidence            356899999999999999999998    9999999988743

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.56  E-value=0.0037  Score=53.36  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||+|..|...|..++++    |++|+++|+++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~----G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASK----GTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT----TCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            4699999999999999999996    999999998763

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.14  Score=39.96  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||-+.+-.|..|++.    .-+|+++-|++.+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~----a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc----CCcEEEEeecccc
Confidence            46899999999999999999997    7899999988754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.19  E-value=0.0049  Score=49.28  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +++|||+|-.|..+|..|.+.    |++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~----g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM----GHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCeEEEecCcHH
Confidence            589999999999999999996    999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.13  E-value=0.0066  Score=52.43  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|||.|-.|+++|..|++.    |++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~----g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR----GHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhC----CCcEEEEeCCH
Confidence            599999999999999999996    99999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.02  E-value=0.0096  Score=50.72  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|+|||+|--|.++|..|++.    |++|+|+.+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~----g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK----CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT----EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc----CCeEEEEEecH
Confidence            4799999999999999999996    89999999876

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.84  E-value=0.011  Score=48.09  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++...+|+|||+|-.|.++|+.|+..+.  .-++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~--~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI--AEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC--CcEEEEeeccc
Confidence            3456789999999999999999999621  24799999876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.76  E-value=0.013  Score=48.66  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||.|-.|.++|..|++.    |++|+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~----g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR----GHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHC----CCEEEEEECCc
Confidence            699999999999999999996    99999999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.028  Score=43.05  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +..++|.|+|||--|-.+|....+.    |++|.++|.++..
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~l----G~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRL----GVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTT----TCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHC----CCEEEEEcCCCCC
Confidence            3446899999999999999999998    9999999988753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.63  E-value=0.01  Score=50.18  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|+|||+|.-|.++|..|++.    |++|.|+.|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~----g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN----GNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH----CCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCEEEEEEecc
Confidence            4799999999999999999996    89999997643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.50  E-value=0.022  Score=46.32  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             CCccEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .-.+|+||| .|..|.++|..|.+.    |++|.++|+...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~----G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRAS----GYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT----TCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHc----CCCcEecccccc
Confidence            345899999 699999999999996    999999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.17  E-value=0.025  Score=43.50  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|||||.+|..-|..|.+.    |.+|+|+....
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~----ga~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEA----GARLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHT----TBEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEeccC
Confidence            346899999999999999999997    99999998655

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.85  E-value=0.028  Score=54.64  Aligned_cols=40  Identities=25%  Similarity=0.363  Sum_probs=37.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~   95 (514)
                      .+.++||||+|-|..=+.+|.+|++.    |.+|+-+|+++..+
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~----GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRS----GQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhc----CCEEEEecCCCcCC
Confidence            46789999999999999999999996    99999999999774

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.022  Score=46.34  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=30.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~   91 (514)
                      ....|+|||||..|+.-|..|.++    |.+|+|+...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~----GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT----GCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG----TCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCC
Confidence            456899999999999999999997    9999999644

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.62  E-value=0.024  Score=47.86  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             cEEEE-CCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVV-GGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIV-GgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|+|| |+|-.|.++|..|++.    |++|+|..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~----G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL----GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT----TCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            58999 6699999999999997    99999999876

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.57  E-value=0.033  Score=45.18  Aligned_cols=40  Identities=28%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +....+|.|||+|-.|.++|+.|+..++  .-++.|+|..+.
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l--~~el~L~Di~~~   42 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGI--ADEIVLIDANES   42 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSHH
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCC--CceEEEEeeccc
Confidence            3455689999999999999999998621  236999998763

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.52  E-value=0.034  Score=47.33  Aligned_cols=32  Identities=38%  Similarity=0.615  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|+|||.|-.||.+|..|++     |++|+.+|-++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~-----g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSL-----QNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-----TSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHHHC-----CCcEEEEECCH
Confidence            369999999999999998875     89999999776

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.28  E-value=0.028  Score=46.61  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      -.|+|+|+|+.|+.++..++..    |.+|+++|+++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~----Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY----GAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhh----cccccccchHH
Confidence            3699999999999998887775    89999999876

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.20  E-value=0.064  Score=43.85  Aligned_cols=35  Identities=37%  Similarity=0.545  Sum_probs=30.3

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ...+|.|||+|-.|.++|+.|...    |+  ++.|+|.+.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~----~l~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLK----GLADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTT----TSCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCc
Confidence            445899999999999999999996    54  799999775

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.16  E-value=0.06  Score=44.05  Aligned_cols=35  Identities=37%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +..+|.|||+|-.|.++|+.|...    |+  ++.|+|.+.
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~----~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGK----SLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCCcEEEEEEecc
Confidence            356999999999999999999996    65  799999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.036  Score=46.06  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      -.|+|+|+|+.|+.++..+...    |. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~----G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAM----GAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHc----CCceEEeccCCH
Confidence            3699999999999999988886    76 799999876

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.76  E-value=0.052  Score=44.15  Aligned_cols=36  Identities=19%  Similarity=0.130  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~   94 (514)
                      .-+|+|||||-+|+=+|..|.+.    | .+|+++++++..
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~----GA~~V~vi~rr~~~   81 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRC----GARRVFLVFRKGFV   81 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT----TCSEEEEECSSCGG
T ss_pred             CCEEEEECCChhHHHHHHHHHHc----CCcceeEEEeCChh
Confidence            34799999999999999998886    5 569999988754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.038  Score=45.61  Aligned_cols=33  Identities=33%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      -.|+|+|+|+.|++++..++..    |.+|+++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~----G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM----GLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHc----CCccceecchh
Confidence            4699999999999988877775    89999998775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.37  E-value=0.059  Score=42.22  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~   94 (514)
                      .++.|+|+|||-+|.+++..+.+.   .+++ |..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~---~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFG---ESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC---SSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhc---CCcEEEEEEeCchHh
Confidence            467899999999999999888776   4887 7788877654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.073  Score=37.57  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .|.|+|||-=|-+++....+.    |++|.+++.++..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~L----G~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPL----GIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGG----TEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHc----CCEEEEEcCCCCC
Confidence            599999999999999999998    9999999987654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.29  E-value=0.058  Score=44.99  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +.+|.|||-|..|..+|..|.+.    |++|.++++.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~----G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            35799999999999999999996    999999998763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.27  E-value=0.048  Score=45.11  Aligned_cols=35  Identities=20%  Similarity=0.192  Sum_probs=29.2

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .-.|+|+|+|+.|++++..++..    |.+|+++++.+.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~----G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAM----GAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----TCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhc----cccccccccchh
Confidence            34699999999999988777664    999999998763

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.27  E-value=0.058  Score=43.39  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=28.5

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      ++|+|||| |-.|.++|+.|+..    ++  ++.|+|.+.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~----~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKE----PFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTC----TTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhC----Ccccccccccchh
Confidence            36999996 99999999999996    54  799999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.25  E-value=0.057  Score=43.32  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      .+|.|||+|-.|.++|+.|+..    ++ ++.++|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~----~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAK----ELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CcceEEEEeeccc
Confidence            3799999999999999999986    44 7999997664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.14  E-value=0.082  Score=42.31  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .+|+|||+|-.|.++|+.|+..+.  .-++.|+|.++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l--~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQL--ARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CceEEEeccccc
Confidence            369999999999999999998621  237999998774

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.97  E-value=0.11  Score=40.76  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||-+.+-.|+.|++.    --+|+|+-|++.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~----a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCC----CCcEEEEEecccc
Confidence            56899999999999999999997    6899999998866

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.89  E-value=0.081  Score=42.34  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~~   94 (514)
                      .+|.|||+|-.|.++|+.|...    ++  ++.|+|.+...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~----~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALR----QTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeccCCc
Confidence            3799999999999999999986    44  79999987743

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.86  E-value=0.074  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=28.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ..+|+|||+|.+|.-+|..|++.    ..+|+++-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~----ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV----AKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT----SCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh----cCEEEEEEecC
Confidence            46899999999999999999996    56666666555

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.82  E-value=0.081  Score=42.37  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+|+|||+|-.|.++|+.|...    |+  ++.|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~----~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQR----GIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCCcEEEEEEecc
Confidence            4799999999999999999986    54  799999766

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.64  E-value=0.064  Score=43.96  Aligned_cols=33  Identities=27%  Similarity=0.507  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||-|..|...|..|.+.    |++|.++++.+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~----G~~V~~~d~~~~   34 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA----GYSLVVSDRNPE   34 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHC----CCeEEEEeCCcc
Confidence            599999999999999999996    999999998763

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.62  E-value=0.062  Score=45.03  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      -.|+|+|+|+.|+.++..+...    |. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~----Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL----GAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccc----cccccccccccc
Confidence            4699999999999988888775    86 799999876

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.47  E-value=0.094  Score=42.37  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +.+|.|||+|-.|.++|+.|.+.+.   -++.|+|.++.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL---GDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEeccCC
Confidence            4589999999999999999988632   26999998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.16  E-value=0.086  Score=43.87  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|.|||-|..|..+|..|.+.    |++|.++++..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~----G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK----GFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            4699999999999999999996    99999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.06  E-value=0.078  Score=44.10  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      .-.|+|+|+|+.|++++..++..    |. +|+++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~----Ga~~Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLR----GAGRIIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTT----TCSCEEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcc----cccccccccchh
Confidence            34799999999999988888875    75 699999776

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.03  E-value=0.12  Score=44.74  Aligned_cols=52  Identities=6%  Similarity=-0.086  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EE
Q 010225          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VG  241 (514)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~  241 (514)
                      ..+.+.|.+.+++.| ++|+++++|++|...                  +++..+.....+|+++.||. |.
T Consensus       236 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~------------------~~~~~v~~v~~~g~~~~ad~VI~  288 (297)
T d2bcgg1         236 GELPQGFARLSAIYG-GTYMLDTPIDEVLYK------------------KDTGKFEGVKTKLGTFKAPLVIA  288 (297)
T ss_dssp             THHHHHHHHHHHHTT-CEEECSCCCCEEEEE------------------TTTTEEEEEEETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhcC-CEEEeCCEeeEEEEE------------------CCCCEEEEEEcCCEEEECCEEEE
Confidence            457888999999888 899999999999761                  12345554557888999999 63

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.95  E-value=0.08  Score=42.59  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      .+|.|||+|-.|.++|+.|...    |+  .+.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~----~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQ----GVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhc----CCCceEEEEeccc
Confidence            3699999999999999998885    53  799999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.12  Score=41.66  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .|+|+|.|..|..++..|.+.    |++|+|+|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~----~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR----GQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHc----CCCEEEEeccc
Confidence            599999999999999999996    99999999876

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.099  Score=43.04  Aligned_cols=35  Identities=26%  Similarity=0.175  Sum_probs=29.1

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      .-.|+|+|+|+.|+.++..++..    |.++++++..+.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~----Ga~~i~~~~~~~   65 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAM----GAHVVAFTTSEA   65 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSGG
T ss_pred             CCEEEEeccchHHHHHHHHhhcc----cccchhhccchh
Confidence            34699999999999988877775    999989987663

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.37  E-value=0.098  Score=42.83  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||-|..|...|..|.++    |++|.++++.+
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~----g~~v~~~d~~~   34 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA----GYLLNVFDLVQ   34 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             EEEEEEEHHHHHHHHHHHHHC----CCeEEEEECch
Confidence            599999999999999999996    99999999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.05  E-value=0.12  Score=41.71  Aligned_cols=33  Identities=27%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      +|.|||.|-.|.++|..|.+.    |++|+++++.+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~----g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSR----GVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHC----CCeEEEEcCchh
Confidence            699999999999999999996    999999987663

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.15  Score=41.97  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ...+|+|+|+|=++-++++.|.+.    |.+|+|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~----g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSL----DCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhccc----ceEEEeccchH
Confidence            346899999999999999999997    88999998875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.88  E-value=0.14  Score=42.18  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|.|||.|..|.++|..|.+.    |+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~----g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS----GFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhc----CCCeEEEEEECCh
Confidence            599999999999999999986    65  677788765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.87  E-value=0.13  Score=42.63  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~   93 (514)
                      -.|+|+|+|+.|++++..++..    |. +|++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~----Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA----GASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHh----CCceeeeeccchH
Confidence            4699999999999999999986    76 6888887763

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.76  E-value=0.14  Score=41.07  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=27.2

Q ss_pred             cEEEECC-CHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225           57 DVAVVGG-GMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~g~--~V~viE~~~   92 (514)
                      +|+|||| |-.|.++|+.|+..    |+  .+.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~----~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNS----PLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTC----TTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhC----CccceEEEEeccc
Confidence            6999996 99999999999986    54  599998754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.76  E-value=0.13  Score=42.70  Aligned_cols=35  Identities=26%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~   94 (514)
                      -.|+|+|+|+.|+.+...++..    | .+|+++|.++.-
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~----G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSA----GASRIIGIDLNKDK   66 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSCGGG
T ss_pred             CEEEEECCCchhHHHHHHHHHc----CCceEEEecCcHHH
Confidence            3599999999999999999887    6 689999987743

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.70  E-value=0.12  Score=41.24  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~   93 (514)
                      ++|.|||+|-.|.++|+.|+..    |+  .+.|+|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~----~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLN----LDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----SCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc----CcCceEEEEecccc
Confidence            3799999999999999999975    43  5999997763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.48  E-value=0.15  Score=40.64  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .+|.|||+|-.|.++|+.|+..+.  .-++.++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l--~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CCEEEEEeccc
Confidence            379999999999999998888521  24799999765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.47  E-value=0.13  Score=43.57  Aligned_cols=35  Identities=37%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-.|+|+|+|+.|++++..++..+   .-+|+++|..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~g---a~~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLG---AAVVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT---CSEEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhc---ccceeeecccc
Confidence            347999999999999888887651   44799998765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.06  E-value=0.21  Score=40.21  Aligned_cols=32  Identities=19%  Similarity=0.272  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +|.|||+|-.|.++|..|.+.    |++|+|+++..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~----~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQT----PHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS----SCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhC----CCeEEEEcChH
Confidence            699999999999999999986    89999999765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.04  E-value=0.14  Score=41.90  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      -.|+|+|+|+.|++++..++..    |.+|++++..+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~----g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM----GLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcC----CCeEeccCCCH
Confidence            4699999999999988877775    89999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.82  E-value=0.015  Score=51.27  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+++++..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEA----NPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSS----CTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhc----CCceEEEEecccc
Confidence            35799999999999999999997    8999999999865

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.30  E-value=0.26  Score=40.57  Aligned_cols=35  Identities=31%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      -.|+|+|+|+.|++++..++..+   +.+|+++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g---~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAG---AKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHh---hchheeecchHH
Confidence            35999999999999999988872   567999998773

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=86.94  E-value=0.24  Score=40.60  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      +..+|+|+|+|=++-++++.|.+.    |. +|.|+.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~----g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNS----GFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHT----TCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEecccH
Confidence            346899999999999999999997    76 699998765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.38  E-value=0.3  Score=38.93  Aligned_cols=35  Identities=37%  Similarity=0.599  Sum_probs=26.9

Q ss_pred             ccEEEEC-CCHHHHHHHHHhcc-CCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVG-GGMVGMALACSLAS-MPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVG-gG~aGl~~A~~L~~-~~~~~g~~V~viE~~~   92 (514)
                      .+|.||| +|-.|.++|+.|+. .+  -.-.+.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~--~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLP--SGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSC--TTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCC--CCcEEEEecccc
Confidence            3799999 59999999998853 21  145799999654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=85.94  E-value=0.28  Score=39.38  Aligned_cols=34  Identities=24%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|.|||+|-.|.++|..|.+.   .+++|.+++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~---~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ---GGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---CSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC---CCCcEEEEeCCh
Confidence            3699999999999999988886   248999998876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.88  E-value=0.25  Score=40.81  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~   93 (514)
                      -.|+|+|+|+.|++++..++..    | .+|+++|.++.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~----G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAA----GASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHc----CCceeeccCChHH
Confidence            4699999999999999998886    6 47999998763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.41  E-value=0.24  Score=40.81  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      .-+|+|+|+|+.|++++..++..    |. .|.+.+.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~----g~~~v~~~~~~~   63 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVC----GASIIIAVDIVE   63 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHH----TCSEEEEEESCH
T ss_pred             CCEEEEeCCCHHHhhhhhccccc----ccceeeeeccHH
Confidence            44799999999999999888776    65 456667554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=84.93  E-value=0.4  Score=39.40  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      -.|+|+|+|..|++++..++..+   +.+|++++.++.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g---~~~Vi~~~~~~~   64 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAG---AARIIGVDINKD   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CSEEEEECSCGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHcC---CceEEeecCcHH
Confidence            35999999999999999999972   468999998774

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=84.63  E-value=0.43  Score=37.84  Aligned_cols=31  Identities=35%  Similarity=0.546  Sum_probs=26.4

Q ss_pred             cEEEEC-CCHHHHHHHHHhccCCCCCCc--EEEEEcCC
Q 010225           57 DVAVVG-GGMVGMALACSLASMPLTKHL--SVAIIDSN   91 (514)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~g~--~V~viE~~   91 (514)
                      +|.||| +|-.|.++|+.|...    ++  .+.|+|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~----~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALR----DIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT----TCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhC----CCCCEEEEEecC
Confidence            699999 699999999999986    44  68898854

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.38  E-value=0.62  Score=35.46  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CCccEEEECCCH-----------HHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGM-----------VGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~-----------aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|||+||           ++..++..|++.    |++++++--++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~----g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED----GYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT----TCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhc----CCeEEEEecChhh
Confidence            356899999996           788899999997    9999999998854

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.26  E-value=0.28  Score=43.00  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~   92 (514)
                      ...|+|||+|-.|..+|..|++.    |+ +++|+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA----GVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH----TCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc----CCCeEEEECCcc
Confidence            35899999999999999999998    76 699999765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.41  Score=38.75  Aligned_cols=35  Identities=29%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-..|+|||-|-.|-..|..|+..    |.+|+++|.++
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~----G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGF----GARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhC----CCeeEeeeccc
Confidence            345799999999999999999997    99999999987

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.94  E-value=0.31  Score=39.98  Aligned_cols=35  Identities=29%  Similarity=0.270  Sum_probs=27.6

Q ss_pred             CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-.|+|+|+|+.|+.++..++..+   +..|+++++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g---~~~vv~~~~~~   67 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMT---PATVIALDVKE   67 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHC---CCEEEEEESSH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhc---Ccccccccchh
Confidence            346999999999999888887651   35778888775

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.74  E-value=0.63  Score=38.27  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=29.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      +..+|+|+|+|-++-++++.|.+.    | +|.|+-|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~----~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD----N-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS----S-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc----c-ceeeehhhh
Confidence            456899999999999999999885    6 899998875

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.07  E-value=0.28  Score=39.55  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASM   77 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~   77 (514)
                      .+.+|+|||| |..|.++|+.|+..
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc
Confidence            4568999997 99999999999985

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.57  Score=39.42  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      .+|+|+|| |..|..++..|.+.    |++|+++.|++..
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~----g~~V~~~~R~~~~   39 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQA----GYEVTVLVRDSSR   39 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT----TCEEEEEESCGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC----cCEEEEEEcChhh
Confidence            36999996 99999999988885    9999999987643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=82.25  E-value=0.74  Score=38.00  Aligned_cols=37  Identities=11%  Similarity=0.147  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ...+|+|+|+|-+|-++++.|.+++   ..+++|+.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g---~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG---LKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT---CSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC---CceEeeeccchH
Confidence            3468999999999999999999972   347999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=82.24  E-value=0.46  Score=42.46  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~   93 (514)
                      ++.+|+|+|| |..|..++..|.+.    |++|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~----G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL----GHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT----TCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC----CCEEEEEECCCc
Confidence            3557999997 99999999999985    999999988764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.20  E-value=0.33  Score=39.12  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             CCccEEEECC-CHHHHHHHHHhccCCCC---CCcEEEEEcCCC
Q 010225           54 DQYDVAVVGG-GMVGMALACSLASMPLT---KHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~---~g~~V~viE~~~   92 (514)
                      ++.+|+|||| |..|.++|+.|+.....   .-....++|.+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~   44 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP   44 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence            3568999996 99999999999863110   113466666544

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=0.78  Score=35.26  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CCccEEEECCCH-----------HHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           54 DQYDVAVVGGGM-----------VGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        54 ~~~dVvIVGgG~-----------aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      ...+|+|+|+||           ++..++..|++.    |++++++-.++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~----g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE----GYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH----TCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc----CCeEEEecCchHh
Confidence            456899999997           788899999997    9999999988854

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=81.55  E-value=0.47  Score=38.25  Aligned_cols=35  Identities=29%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      .-..|+|+|=|-+|--+|..|+..    |.+|+|.|.+|
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~----Ga~V~V~E~DP   56 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGL----GARVYITEIDP   56 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSCH
T ss_pred             cCCEEEEecccccchhHHHHHHhC----CCEEEEEecCc
Confidence            456899999999999999999997    99999999998

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=81.54  E-value=0.52  Score=41.81  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225           55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (514)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~~~   94 (514)
                      +.+|+|+|| |-.|..++..|.+.    |++|+++.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~----G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL----GHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT----TCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC----CCeEEEEECCCcc
Confidence            568999998 99999999999985    9999999988643

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=80.32  E-value=0.6  Score=38.23  Aligned_cols=35  Identities=11%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ....|+|+|+|=++-++++.|.+.    +.+|+|+-|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~----~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA----QQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc----CceeeeccchH
Confidence            456799999999999999999984    78999998875

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.05  E-value=0.8  Score=40.20  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (514)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~   92 (514)
                      ++|+|.|| |..|..++..|.+.    |++|+.+++..
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~----g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK----NVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS----SEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC----CCEEEEeechh
Confidence            46999998 99999999999985    99999999865