Citrus Sinensis ID: 010268

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSKLINT
cccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccc
cccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHcccccHHHHcHccccHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHEHcHHHHHHccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHccccccHHHHHHHHHcccc
mgiksddekqtytVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPavqslwhlspnqeslITSVVFAGMLVGAYswgivsdnfgrrKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGlglgggpvlASWFlefipapnrgFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYsvtpesprylclkgrtAEARHVLEKIAKingtklpsgnlvsdWEHElqnksllssssneddttpkemardedSISEakemksedststlansnmGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTElnngqnkcvsnelqsgksrdinygdvfitsfaeFPGLLLAAAMVDRLGRKLSMSSMFfccciflvpllfqqpkglttgllFGARICITVTFTVVYVyapeiyptsvrttgvgvassigriggmVCPLVAVALVHGCHQTAALILFELVILLSGIsvllfpfettgrglsdslpssklint
mgiksddekqtyTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIakingtklpsGNLVSDWEHELqnksllssssneddttpkemardedsiseakemksedststlansNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPeiyptsvrttGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFEttgrglsdslpssklint
MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYlllffrclvglglgggpvlASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWllglsafpsslllllysVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKsllssssNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFElvillsgisvllFPFETTGRGLSDSLPSSKLINT
***********YTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLP**NLV*****************************************************MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNEL***KSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETT****************
***********YTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQ***************************************TLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDS*****L***
*********QTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSL************************************LANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGL************
**********TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGT***SGNLVSDWEHELQN**************************E*****************MGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSS*****
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iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
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MGIKSDDEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSLPSSKLINT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q940M4500 Organic cation/carnitine yes no 0.953 0.98 0.657 1e-176
P30638520 Putative transporter ZK63 yes no 0.869 0.859 0.352 9e-84
Q2XWK0548 Synaptic vesicle 2-relate N/A no 0.869 0.815 0.363 3e-82
Q1JP63548 Synaptic vesicle 2-relate yes no 0.859 0.806 0.360 4e-80
Q8N4V2548 Synaptic vesicle 2-relate yes no 0.859 0.806 0.360 5e-80
Q5R5T8548 Synaptic vesicle 2-relate yes no 0.861 0.808 0.355 5e-80
Q8BFT9548 Synaptic vesicle 2-relate yes no 0.867 0.813 0.359 7e-76
Q9Z2I7548 Synaptic vesicle 2-relate yes no 0.863 0.810 0.359 4e-75
Q8N434492 Putative transporter SVOP no no 0.863 0.902 0.299 4e-62
Q6PDF3494 Putative transporter SVOP no no 0.867 0.902 0.289 1e-60
>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 Back     alignment and function desciption
 Score =  619 bits (1596), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 332/505 (65%), Positives = 392/505 (77%), Gaps = 15/505 (2%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           D    +TVDEA+V MGFGKFQ+ VLAYAGMGW++EAMEMMLLSFVGPAVQSLW+LS  QE
Sbjct: 3   DGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGML+GAYSWGIVSD  GRRKGF+ITA+VT  AG LSAF+PNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVLASW+LEFIPAP+RG WMV+F  FWTVGTI EA +AWLVMPRLGWRWLL 
Sbjct: 123 VGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSG-NLVSDWEHE 245
            S+ PSSLLLL Y  T ESPRYL L+GR AEA  +LEKIA++N T+LP G          
Sbjct: 183 FSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETEL 242

Query: 246 LQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSP 305
            +NK++ +     ++T   +     ++++ +K +   D              +LL LLSP
Sbjct: 243 EENKNIPT-----ENTHLLKAGESGEAVAVSKIVLKADKEPGF---------SLLALLSP 288

Query: 306 ELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSF 365
            L+K TLLLW+VFFGNAF+YYG+VLLTTELNN  N+C   E Q   S D+NY DVFI SF
Sbjct: 289 TLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVNYRDVFIASF 348

Query: 366 AEFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTF 425
           AEFPGLL++AAMVDRLGRK SM+SM F CCIFL+PLL  Q   +TT LLFG RICI+  F
Sbjct: 349 AEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAF 408

Query: 426 TVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILL 485
           TVVY+YAPEIYPT+VRTTGVGV SS+GRIGG++CPLVAV LVHGCHQT A++LFE+VIL+
Sbjct: 409 TVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILV 468

Query: 486 SGISVLLFPFETTGRGLSDSLPSSK 510
           SGI V LFPFET+GR L+DS+ +SK
Sbjct: 469 SGICVCLFPFETSGRDLTDSISASK 493
High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)
>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 Back     alignment and function description
>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 Back     alignment and function description
>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 Back     alignment and function description
>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 Back     alignment and function description
>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 Back     alignment and function description
>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
225443470495 PREDICTED: synaptic vesicle 2-related pr 0.955 0.991 0.738 0.0
356523480558 PREDICTED: synaptic vesicle 2-related pr 0.929 0.856 0.670 0.0
147767934461 hypothetical protein VITISV_042940 [Viti 0.889 0.991 0.710 0.0
357467655499 Synaptic vesicle 2-related protein [Medi 0.955 0.983 0.675 0.0
224095100463 predicted protein [Populus trichocarpa] 0.894 0.993 0.623 1e-180
297829842500 hypothetical protein ARALYDRAFT_318077 [ 0.953 0.98 0.679 1e-180
242039569491 hypothetical protein SORBIDRAFT_01g02099 0.939 0.983 0.608 1e-177
90265074489 H0702G05.6 [Oryza sativa Indica Group] 0.935 0.983 0.610 1e-177
356522142513 PREDICTED: synaptic vesicle 2-related pr 0.935 0.937 0.685 1e-177
413934140500 hypothetical protein ZEAMMB73_097319 [Ze 0.939 0.966 0.594 1e-175
>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/508 (73%), Positives = 425/508 (83%), Gaps = 17/508 (3%)

Query: 7   DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
           DE   YTVD+A+V MGFG FQ+ VLAYAGMGWISEAMEMMLLSFVGPAVQS W LS ++E
Sbjct: 3   DESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSHEE 62

Query: 67  SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRCL 126
           SLITSVVFAGMLVGAYSWGIVSDN GRRKGFLITA+VTSAAG LSAFAPNY  L+  RCL
Sbjct: 63  SLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRCL 122

Query: 127 VGLGLGGGPVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWLLG 186
           VGLGLGGGPVL+SWFLEFIPAPNRG WMVIF  FWTVGTILEA +AW VMP LGWRWLL 
Sbjct: 123 VGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWLLA 182

Query: 187 LSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
           LSA PS LLL+ Y VTPESPRYLCLKGRT EA  VLEKIA++N  +LP G LVSD  H++
Sbjct: 183 LSALPSLLLLIFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSD--HQV 240

Query: 247 QNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
                 +S+ +ED    K ++ + DS S  K++          +SNMGGI++L +LLSP+
Sbjct: 241 GVPE--NSNPSEDM---KLLSPEADSGSSHKDI----------DSNMGGISSLFMLLSPK 285

Query: 307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
           L++STLLLW+VFFGNAFSYYGLVLLT+ELNN QNKC   ELQS K++DINY DVFITSFA
Sbjct: 286 LLRSTLLLWMVFFGNAFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDINYKDVFITSFA 345

Query: 367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
           EFPGLLL+AA VD LGRKLSMS+MFF CCIFL+PL+F QP+GLTT LLFGARICITVTFT
Sbjct: 346 EFPGLLLSAATVDILGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFT 405

Query: 427 VVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELVILLS 486
           VVY+YAPEIYPTSVRTTGVGVASS+GRIGGM+CPLVAV LVHGCHQ AA+ILFE+VI +S
Sbjct: 406 VVYIYAPEIYPTSVRTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFIS 465

Query: 487 GISVLLFPFETTGRGLSDSLPSSKLINT 514
           GI V+LFPFET GR L D+L SS+ +N+
Sbjct: 466 GICVILFPFETKGRELKDTLSSSEQVNS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523480|ref|XP_003530366.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max] Back     alignment and taxonomy information
>gi|147767934|emb|CAN64534.1| hypothetical protein VITISV_042940 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297829842|ref|XP_002882803.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata] gi|297328643|gb|EFH59062.1| hypothetical protein ARALYDRAFT_318077 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|356522142|ref|XP_003529708.1| PREDICTED: synaptic vesicle 2-related protein-like [Glycine max] Back     alignment and taxonomy information
>gi|413934140|gb|AFW68691.1| hypothetical protein ZEAMMB73_097319 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2089270500 NiaP "nicotinate transporter" 0.955 0.982 0.605 4e-154
WB|WBGene00014021520 svop-1 [Caenorhabditis elegans 0.461 0.455 0.341 3.7e-72
UNIPROTKB|F1NIB3554 SVOP "Uncharacterized protein" 0.451 0.418 0.349 6e-70
UNIPROTKB|E2QZ16548 SVOP "Uncharacterized protein" 0.445 0.417 0.353 9.8e-70
UNIPROTKB|F6XK47483 SVOP "Uncharacterized protein" 0.445 0.474 0.353 9.8e-70
UNIPROTKB|G3MZU5547 SVOP "Synaptic vesicle 2-relat 0.445 0.418 0.353 1.6e-69
UNIPROTKB|Q1JP63548 SVOP "Synaptic vesicle 2-relat 0.445 0.417 0.353 1.6e-69
UNIPROTKB|Q8N4V2548 SVOP "Synaptic vesicle 2-relat 0.445 0.417 0.353 2e-69
ZFIN|ZDB-GENE-060526-336549 svopa "SV2 related protein hom 0.445 0.417 0.340 2e-69
UNIPROTKB|F1RGB1548 SVOP "Uncharacterized protein" 0.445 0.417 0.353 4.2e-69
TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 305/504 (60%), Positives = 355/504 (70%)

Query:     7 DEKQTYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQE 66
             D    +TVDEA+V MGFGKFQ+ VLAYAGMGW++EAMEMMLLSFVGPAVQSLW+LS  QE
Sbjct:     3 DGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSARQE 62

Query:    67 SLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYXXXXXXXX 126
             SLITSVVFAGML+GAYSWGIVSD  GRRKGF+ITA+VT  AG LSAF+PNY         
Sbjct:    63 SLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCL 122

Query:   127 XXXXXXXXXXXASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWXXX 186
                        ASW+LEFIPAP+RG WMV+F  FWTVGTI EA +AWLVMPRLGWRW   
Sbjct:   123 VGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLA 182

Query:   187 XXXXXXXXXXXXXXVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHEL 246
                            T ESPRYL L+GR AEA  +LEKIA++N T+LP G L S+ E EL
Sbjct:   183 FSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETEL 242

Query:   247 QNKXXXXXXXNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPE 306
             +          E+   P E      +  E+ E  +       A+   G   +LL LLSP 
Sbjct:   243 E----------ENKNIPTENTHLLKA-GESGEAVAVSKIVLKADKEPG--FSLLALLSPT 289

Query:   307 LIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFA 366
             L+K TLLLW+VFFGNAF+YYG+VLLTTELNN  N+C   E Q   S D+NY DVFI SFA
Sbjct:   290 LMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVNYRDVFIASFA 349

Query:   367 EFPGLLLAAAMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFT 426
             EFPGLL++AAMVDRLGRK SM+SM F CCIFL+PLL  Q   +TT LLFG RICI+  FT
Sbjct:   350 EFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFT 409

Query:   427 VVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFEXXXXXX 486
             VVY+YAPEIYPT+VRTTGVGV SS+GRIGG++CPLVAV LVHGCHQT A++LFE      
Sbjct:   410 VVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVS 469

Query:   487 XXXXXXFPFETTGRGLSDSLPSSK 510
                   FPFET+GR L+DS+ +SK
Sbjct:   470 GICVCLFPFETSGRDLTDSISASK 493
GO:0005215 "transporter activity" evidence=IEA
GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA
GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0022857 "transmembrane transporter activity" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0090416 "nicotinate transporter activity" evidence=IDA
GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA
GO:2001142 "nicotinate transport" evidence=IDA
GO:2001143 "N-methylnicotinate transport" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009693 "ethylene biosynthetic process" evidence=RCA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N4V2SVOP_HUMANNo assigned EC number0.36040.85990.8065yesno
Q940M4OCT7_ARATHNo assigned EC number0.65740.95330.98yesno
P30638YOU1_CAEELNo assigned EC number0.35270.86960.8596yesno
Q5R5T8SVOP_PONABNo assigned EC number0.35530.86180.8083yesno
Q1JP63SVOP_BOVINNo assigned EC number0.36040.85990.8065yesno
Q9Z2I7SVOP_RATNo assigned EC number0.35990.86380.8102yesno
Q8BFT9SVOP_MOUSENo assigned EC number0.35930.86770.8138yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VII.187.1
hypothetical protein (463 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
TIGR00898505 TIGR00898, 2A0119, cation transport protein 5e-89
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 2e-40
TIGR00895398 TIGR00895, 2A0115, benzoate transport 4e-39
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 2e-34
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 4e-31
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 2e-22
TIGR00891405 TIGR00891, 2A0112, putative sialic acid transporte 3e-20
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 5e-17
PRK10077479 PRK10077, xylE, D-xylose transporter XylE; Provisi 2e-14
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 8e-13
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 6e-11
PRK03893496 PRK03893, PRK03893, putative sialic acid transport 1e-10
TIGR00887502 TIGR00887, 2A0109, phosphate:H+ symporter 6e-09
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 9e-09
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 1e-08
TIGR00893399 TIGR00893, 2A0114, D-galactonate transporter 5e-08
PRK12307426 PRK12307, PRK12307, putative sialic acid transport 1e-07
PRK11551406 PRK11551, PRK11551, putative 3-hydroxyphenylpropio 9e-07
TIGR00887502 TIGR00887, 2A0109, phosphate:H+ symporter 3e-06
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 6e-06
pfam07690 346 pfam07690, MFS_1, Major Facilitator Superfamily 1e-05
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 1e-05
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 1e-05
TIGR00881379 TIGR00881, 2A0104, phosphoglycerate transporter fa 2e-05
TIGR00710385 TIGR00710, efflux_Bcr_CflA, drug resistance transp 3e-05
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 4e-05
COG2223417 COG2223, NarK, Nitrate/nitrite transporter [Inorga 2e-04
TIGR01299742 TIGR01299, synapt_SV2, synaptic vesicle protein SV 3e-04
pfam13347425 pfam13347, MFS_2, MFS/sugar transport protein 5e-04
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 7e-04
TIGR00711485 TIGR00711, efflux_EmrB, drug resistance transporte 0.001
TIGR00883394 TIGR00883, 2A0106, metabolite-proton symporter 0.004
PRK11043401 PRK11043, PRK11043, putative transporter; Provisio 0.004
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein Back     alignment and domain information 
 Score =  281 bits (721), Expect = 5e-89
 Identities = 154/502 (30%), Positives = 236/502 (47%), Gaps = 75/502 (14%)

Query: 11  TYTVDEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFV--GPAVQSLWHLSPN---Q 65
            + VD+       G   L +    G+      ++    S+      + + W L      +
Sbjct: 70  RFMVDQWANPSLLGCEPLKLSD-LGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWK 128

Query: 66  ESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAPNYYLLLFFRC 125
             L  S  F G+L+G++ +G +SD FGR+K  L++ +VT+ +G+L+AF+PNY + L FR 
Sbjct: 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL 188

Query: 126 LVGLGLGGGPVLASWF-LEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMPRLGWRWL 184
           LVG+G+GG  V A     EF+P   R     + Q F+++G +L   +A+ +     WRWL
Sbjct: 189 LVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWL 245

Query: 185 LGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEH 244
               + P+ L  LL    PESPR+L  +GR  EA  +L++IAKING KLP+         
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE-------- 297

Query: 245 ELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLS 304
                 +LS S  +D                              +S+    + L +  +
Sbjct: 298 ------VLSLSLEKD-----------------------------LSSSKKQYSFLDLFRT 322

Query: 305 PELIKSTLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITS 364
           P L K+TL L +++F  AFSYYGLVL    L  G N                Y D+FI+ 
Sbjct: 323 PNLRKTTLCLMMLWFTTAFSYYGLVLDLGNL--GGN---------------IYLDLFISG 365

Query: 365 FAEFPGLLLAAAMVDRLGRKLSMSSMFFC--CCIFLVPLLFQQPKGLTTGLLFGARICIT 422
             E P  L+   ++DRLGR+ +M++        + L+  +      L T L    +  IT
Sbjct: 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGIT 425

Query: 423 VTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAVALVHGCHQTAALILFELV 482
             F +VY+Y  E+YPT VR  GVGV S++ R+G ++ P +             L+LF  +
Sbjct: 426 SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLG--EKWLFLPLVLFGGL 483

Query: 483 ILLSGISVLLFPFETTGRGLSD 504
            LL+GI  L  P ET G  L +
Sbjct: 484 ALLAGILTLFLP-ETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter Back     alignment and domain information
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein Back     alignment and domain information
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 Back     alignment and domain information
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter Back     alignment and domain information
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 100.0
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 100.0
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 100.0
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 100.0
PRK10642490 proline/glycine betaine transporter; Provisional 100.0
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 100.0
PRK10077479 xylE D-xylose transporter XylE; Provisional 100.0
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 100.0
PRK12307426 putative sialic acid transporter; Provisional 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
TIGR00898505 2A0119 cation transport protein. 100.0
PRK03545390 putative arabinose transporter; Provisional 100.0
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 100.0
TIGR00891405 2A0112 putative sialic acid transporter. 100.0
KOG0569485 consensus Permease of the major facilitator superf 100.0
PRK10406432 alpha-ketoglutarate transporter; Provisional 100.0
TIGR00895398 2A0115 benzoate transport. 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK03699394 putative transporter; Provisional 100.0
PRK05122399 major facilitator superfamily transporter; Provisi 100.0
PRK15075434 citrate-proton symporter; Provisional 100.0
PRK10213394 nepI ribonucleoside transporter; Reviewed 100.0
PRK09952438 shikimate transporter; Provisional 100.0
PRK10489417 enterobactin exporter EntS; Provisional 100.0
PRK03893496 putative sialic acid transporter; Provisional 100.0
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 100.0
TIGR00893399 2A0114 d-galactonate transporter. 100.0
PLN00028476 nitrate transmembrane transporter; Provisional 100.0
PRK12382392 putative transporter; Provisional 100.0
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 100.0
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 100.0
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 100.0
PRK14995495 methyl viologen resistance protein SmvA; Provision 100.0
PRK15402406 multidrug efflux system translocase MdfA; Provisio 100.0
TIGR00892455 2A0113 monocarboxylate transporter 1. 100.0
TIGR00900365 2A0121 H+ Antiporter protein. 100.0
PRK09874408 drug efflux system protein MdtG; Provisional 100.0
PRK10091382 MFS transport protein AraJ; Provisional 100.0
PRK03633381 putative MFS family transporter protein; Provision 100.0
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 100.0
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 100.0
PRK10504471 putative transporter; Provisional 100.0
TIGR00897402 2A0118 polyol permease family. This family of prot 100.0
KOG0254513 consensus Predicted transporter (major facilitator 100.0
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 100.0
PRK10133438 L-fucose transporter; Provisional 100.0
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 100.0
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 100.0
TIGR00881379 2A0104 phosphoglycerate transporter family protein 100.0
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 100.0
PRK11043401 putative transporter; Provisional 100.0
PRK11195393 lysophospholipid transporter LplT; Provisional 100.0
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 100.0
PRK11646400 multidrug resistance protein MdtH; Provisional 100.0
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 100.0
PRK10473392 multidrug efflux system protein MdtL; Provisional 100.0
PRK15403413 multidrug efflux system protein MdtM; Provisional 100.0
PRK10054395 putative transporter; Provisional 100.0
TIGR00902382 2A0127 phenyl proprionate permease family protein. 100.0
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 100.0
PRK11010491 ampG muropeptide transporter; Validated 100.0
KOG2532466 consensus Permease of the major facilitator superf 100.0
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.98
PRK15011393 sugar efflux transporter B; Provisional 99.98
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.98
PRK11652394 emrD multidrug resistance protein D; Provisional 99.97
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.97
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.97
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.97
PRK09528420 lacY galactoside permease; Reviewed 99.97
PRK11902402 ampG muropeptide transporter; Reviewed 99.97
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.97
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.97
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.97
TIGR00896355 CynX cyanate transporter. This family of proteins 99.97
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.97
KOG2533495 consensus Permease of the major facilitator superf 99.97
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.96
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.96
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.96
TIGR00901356 2A0125 AmpG-related permease. 99.96
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.96
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.96
KOG2615451 consensus Permease of the major facilitator superf 99.96
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.95
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.95
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.95
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.95
PTZ00207591 hypothetical protein; Provisional 99.95
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.95
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.95
TIGR00805633 oat sodium-independent organic anion transporter. 99.94
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.94
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.94
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.93
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.93
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.92
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.92
PRK09669444 putative symporter YagG; Provisional 99.91
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.9
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.9
PRK10429473 melibiose:sodium symporter; Provisional 99.89
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.89
PF13347428 MFS_2: MFS/sugar transport protein 99.89
KOG2563480 consensus Permease of the major facilitator superf 99.88
PRK11462460 putative transporter; Provisional 99.86
PRK09848448 glucuronide transporter; Provisional 99.86
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.86
COG2270438 Permeases of the major facilitator superfamily [Ge 99.85
COG2211467 MelB Na+/melibiose symporter and related transport 99.83
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.8
KOG2325488 consensus Predicted transporter/transmembrane prot 99.78
PRK10642490 proline/glycine betaine transporter; Provisional 99.72
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.72
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.69
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.66
KOG3626735 consensus Organic anion transporter [Secondary met 99.63
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.63
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.62
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.61
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.6
PRK15011393 sugar efflux transporter B; Provisional 99.59
PRK09528420 lacY galactoside permease; Reviewed 99.59
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.58
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.58
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.57
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.57
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.56
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.55
PRK05122399 major facilitator superfamily transporter; Provisi 99.54
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.53
PRK11663 434 regulatory protein UhpC; Provisional 99.52
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 99.52
PRK09874408 drug efflux system protein MdtG; Provisional 99.52
PRK03545390 putative arabinose transporter; Provisional 99.52
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.51
PRK10489417 enterobactin exporter EntS; Provisional 99.51
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.5
KOG3762618 consensus Predicted transporter [General function 99.5
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.5
TIGR00897402 2A0118 polyol permease family. This family of prot 99.5
PRK12382392 putative transporter; Provisional 99.49
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.48
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.48
PRK03633381 putative MFS family transporter protein; Provision 99.47
PRK10504 471 putative transporter; Provisional 99.47
PRK03893496 putative sialic acid transporter; Provisional 99.47
TIGR00895 398 2A0115 benzoate transport. 99.47
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.47
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.47
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.46
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.46
PRK10054 395 putative transporter; Provisional 99.46
PRK03699394 putative transporter; Provisional 99.45
PLN00028 476 nitrate transmembrane transporter; Provisional 99.45
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.44
TIGR00891 405 2A0112 putative sialic acid transporter. 99.44
TIGR00893 399 2A0114 d-galactonate transporter. 99.44
TIGR00900 365 2A0121 H+ Antiporter protein. 99.42
PRK10091 382 MFS transport protein AraJ; Provisional 99.42
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.42
PRK09705393 cynX putative cyanate transporter; Provisional 99.42
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.41
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.41
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.4
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.4
PRK12307 426 putative sialic acid transporter; Provisional 99.4
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.4
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.4
PRK09952438 shikimate transporter; Provisional 99.39
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.38
PRK11010491 ampG muropeptide transporter; Validated 99.38
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.38
PRK11646 400 multidrug resistance protein MdtH; Provisional 99.37
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.37
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.37
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.37
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.36
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.36
KOG1330 493 consensus Sugar transporter/spinster transmembrane 99.36
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.36
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.36
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.35
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.35
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.35
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.34
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.34
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.34
PRK11043 401 putative transporter; Provisional 99.33
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 99.32
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.32
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.31
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.29
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.29
PRK11195 393 lysophospholipid transporter LplT; Provisional 99.28
PRK15075434 citrate-proton symporter; Provisional 99.28
KOG0569485 consensus Permease of the major facilitator superf 99.27
KOG3764 464 consensus Vesicular amine transporter [Intracellul 99.27
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.26
PRK11902402 ampG muropeptide transporter; Reviewed 99.25
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 99.24
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.24
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.24
COG2223 417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.23
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 99.22
COG2270438 Permeases of the major facilitator superfamily [Ge 99.22
KOG0637498 consensus Sucrose transporter and related proteins 99.2
TIGR00898505 2A0119 cation transport protein. 99.2
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 99.19
KOG3098461 consensus Uncharacterized conserved protein [Funct 99.19
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 99.18
PRK10133 438 L-fucose transporter; Provisional 99.16
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 99.16
TIGR00805 633 oat sodium-independent organic anion transporter. 99.15
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.13
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.13
TIGR00896355 CynX cyanate transporter. This family of proteins 99.13
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.12
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 99.11
KOG2615 451 consensus Permease of the major facilitator superf 99.11
PRK09848448 glucuronide transporter; Provisional 99.1
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 99.09
TIGR00901356 2A0125 AmpG-related permease. 99.09
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.07
PTZ00207 591 hypothetical protein; Provisional 99.07
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.06
KOG2532 466 consensus Permease of the major facilitator superf 99.05
PRK10429473 melibiose:sodium symporter; Provisional 99.02
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.02
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.01
PF13347428 MFS_2: MFS/sugar transport protein 98.99
PRK09669444 putative symporter YagG; Provisional 98.99
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 98.98
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 98.94
COG0477338 ProP Permeases of the major facilitator superfamil 98.93
KOG0254 513 consensus Predicted transporter (major facilitator 98.91
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.9
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 98.9
KOG3762618 consensus Predicted transporter [General function 98.85
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 98.84
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 98.81
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.8
TIGR00788468 fbt folate/biopterin transporter. The only functio 98.77
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.76
COG2211467 MelB Na+/melibiose symporter and related transport 98.76
PRK11462460 putative transporter; Provisional 98.7
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 98.69
KOG2533 495 consensus Permease of the major facilitator superf 98.69
KOG3810433 consensus Micronutrient transporters (folate trans 98.68
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.65
PF1283277 MFS_1_like: MFS_1 like family 98.63
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.61
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.48
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 98.48
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 98.46
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 98.44
COG3202509 ATP/ADP translocase [Energy production and convers 98.43
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 98.4
KOG2816 463 consensus Predicted transporter ADD1 (major facili 98.34
KOG2325 488 consensus Predicted transporter/transmembrane prot 98.34
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 98.09
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 98.09
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.09
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 97.85
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.74
KOG3880409 consensus Predicted small molecule transporter inv 97.58
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 97.56
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 97.43
KOG2563480 consensus Permease of the major facilitator superf 97.33
PRK03612521 spermidine synthase; Provisional 97.16
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 97.11
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 97.03
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 97.03
PF1283277 MFS_1_like: MFS_1 like family 97.0
KOG3626 735 consensus Organic anion transporter [Secondary met 96.88
COG0477 338 ProP Permeases of the major facilitator superfamil 96.78
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 96.71
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 96.71
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 96.52
KOG3098461 consensus Uncharacterized conserved protein [Funct 96.45
PRK03612 521 spermidine synthase; Provisional 96.24
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 96.11
KOG2601503 consensus Iron transporter [Inorganic ion transpor 95.86
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 95.84
PF03219 491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 95.76
KOG3097390 consensus Predicted membrane protein [Function unk 95.29
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 94.45
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 94.38
KOG0637 498 consensus Sucrose transporter and related proteins 94.37
COG3202 509 ATP/ADP translocase [Energy production and convers 94.09
COG4262508 Predicted spermidine synthase with an N-terminal m 90.5
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 89.62
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 87.8
KOG3097 390 consensus Predicted membrane protein [Function unk 86.67
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 85.79
KOG3810433 consensus Micronutrient transporters (folate trans 80.59
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 80.42
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information 
Probab=100.00  E-value=1.5e-45  Score=373.13  Aligned_cols=469  Identities=24%  Similarity=0.432  Sum_probs=354.3

Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCCh
Q 010268           15 DEAIVTMGFGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRR   94 (514)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r   94 (514)
                      ++..++.+.++++|.++++++++.+..+++...++.++|.+.+++|++..+.+++.+++.++.+++++++|+++||+|||
T Consensus       153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            34455667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 010268           95 KGFLITAIVTSAAGLLSAFAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAW  173 (514)
Q Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~  173 (514)
                      +++++++++.+++.++++++++++.++++|++.|++.|.. +...+++.|++|+++|++.++++.+++.+|.++++.++.
T Consensus       233 ~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       233 QCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 788899999999999999999999999999999998887


Q ss_pred             HHhcc-------------cchHHHHHHhHHHHHHHHHHHHHccCChhhhhccCCchHHHHHHHHHHHHhCCCCCCCCCCC
Q 010268          174 LVMPR-------------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVS  240 (514)
Q Consensus       174 ~l~~~-------------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
                      .+...             .+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+.......    
T Consensus       313 ~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~----  388 (742)
T TIGR01299       313 AIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHP----  388 (742)
T ss_pred             HHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCch----
Confidence            66543             3689999998888888888888999999999999999998888888765443211000    


Q ss_pred             chhhhhhhhhcccCCCCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHH
Q 010268          241 DWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFG  320 (514)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (514)
                      ......++...   ...+++ ..    +.+.+.   ... .++.+..........+..++.++++++++..+.+++.+++
T Consensus       389 ~~~~~~~~~~~---~~~~~~-~~----~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~  456 (742)
T TIGR01299       389 EKVFSVNHIKT---IHQEDE-LI----EIESDT---GTW-YQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFT  456 (742)
T ss_pred             hHHHHHHHHHH---hhhhhh-hh----cccccc---cch-hhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence            00000000000   000000 00    000000   000 0000000001111223457789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCccc----------------------ccccc--------------------------------
Q 010268          321 NAFSYYGLVLLTTELNNGQNK----------------------CVSNE--------------------------------  346 (514)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~--------------------------------  346 (514)
                      ..+.||++..|.|.+.+....                      ...+.                                
T Consensus       457 ~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (742)
T TIGR01299       457 LSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTF  536 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccce
Confidence            999999999999977433100                      00000                                


Q ss_pred             --c-----------------------c-----------------CCCcc---------cCcccchhhhhhchhhHHHHHH
Q 010268          347 --L-----------------------Q-----------------SGKSR---------DINYGDVFITSFAEFPGLLLAA  375 (514)
Q Consensus       347 --~-----------------------~-----------------~~~~~---------~~~~~~~~~~~~~~~~g~~~~g  375 (514)
                        .                       +                 .+...         ........+..++.++|.++.|
T Consensus       537 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g  616 (742)
T TIGR01299       537 DDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSA  616 (742)
T ss_pred             eeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0                       0                 00000         0012335566788999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhhhcccCcchhHHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHh
Q 010268          376 AMVDRLGRKLSMSSMFFCCCIFLVPLLFQQPKGLTTGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIG  455 (514)
Q Consensus       376 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  455 (514)
                      +++||+|||+++.++.++.+++.+++.+..+....+++.++.+++.++.++...++++|++|++.|++++|+.+..+.+|
T Consensus       617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlG  696 (742)
T TIGR01299       617 LLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAA  696 (742)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888877776665555555666777777788889999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhcccccccCcC
Q 010268          456 GMVCPLVAVALVHGCHQTAALILFELVILLSGISVLLFPFETTGRG  501 (514)
Q Consensus       456 ~~~~p~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (514)
                      .+++|+++|.+.+. +...++++.+++.++++++.++ .||++++.
T Consensus       697 aiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~  740 (742)
T TIGR01299       697 AVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDTRGQV  740 (742)
T ss_pred             HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCCcccc
Confidence            99999999988875 3556777777777666666554 48888764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 1e-07
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 4e-05
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 Back     alignment and structure
 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 29/174 (16%), Positives = 49/174 (28%), Gaps = 19/174 (10%)

Query: 48  LSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAIVTSAA 107
            +   P +      S        S +        +  G VSD    R       I+ +A 
Sbjct: 47  FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105

Query: 108 GLLSAFAP----NYYLLLFFRCLVGLGLGGGP-----VLASWFLEFIPAPNRGFWMVIFQ 158
            L   F P    +  ++     L G   G G       +  W+        RG  + ++ 
Sbjct: 106 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKERGGIVSVWN 161

Query: 159 TFWTVGTILEAGIAWLVMPRL-GWRWLL----GLSAFPSSLLLLLYSVTPESPR 207
               VG  +   +  L M     W   L      +   +     +   TP+S  
Sbjct: 162 CAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 100.0
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 100.0
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 100.0
2cfq_A417 Lactose permease; transport, transport mechanism, 99.97
2xut_A524 Proton/peptide symporter family protein; transport 99.97
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.57
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.55
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.52
2cfq_A417 Lactose permease; transport, transport mechanism, 99.5
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.45
2xut_A 524 Proton/peptide symporter family protein; transport 99.4
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.32
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-41  Score=338.49  Aligned_cols=422  Identities=19%  Similarity=0.258  Sum_probs=312.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------CcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHH
Q 010268           25 KFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHL--------SPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKG   96 (514)
Q Consensus        25 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~   96 (514)
                      ++.+.+.++..++.+..+++...++..+|.+.++++.        +..+.|++.+++.+|.+++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            4455555666778888999999999999998887743        34567999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHH
Q 010268           97 FLITAIVTSAAGLLSA------------------FAPNYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIF  157 (514)
Q Consensus        97 l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~  157 (514)
                      ++++.+++.++.++++                  +++|++.++++|+++|++.|.. +....++.|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999988                  4789999999999999999998 77789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHhHHHHHHHHHHHHHccCChhhhhccCCchHHHHHHHHHHHHh
Q 010268          158 QTFWTVGTILEAGIAWLVMPR--------LGWRWLLGLSAFPSSLLLLLYSVTPESPRYLCLKGRTAEARHVLEKIAKIN  229 (514)
Q Consensus       158 ~~~~~~G~~~~~~i~~~l~~~--------~gw~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (514)
                      +.+..+|.++++.++..+...        .+||..+.+..++.++..+..+++||+|+++..+++.+++.+.+++....+
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999999988776542        358888888888888888888999999999999999988888777654321


Q ss_pred             CCCCCCCCCCCchhhhhhhhhcccCCCCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHH
Q 010268          230 GTKLPSGNLVSDWEHELQNKSLLSSSSNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIK  309 (514)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  309 (514)
                      ..           +.+..+.                       .+...++++.              ......++.+  +
T Consensus       248 ~~-----------~~~~~~~-----------------------~~~~~~~~~~--------------~~~~~~~~~~--~  277 (491)
T 4gc0_A          248 LA-----------TQAVQEI-----------------------KHSLDHGRKT--------------GGRLLMFGVG--V  277 (491)
T ss_dssp             HH-----------HHHHHHH-----------------------HHHHHHHHHH--------------TTHHHHSCCT--H
T ss_pred             hh-----------HHHHHHH-----------------------HHHHHhhhhh--------------hhHHHHhccc--H
Confidence            10           0000000                       0000000000              0111112211  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHH
Q 010268          310 STLLLWLVFFGNAFSYYGLVLLTTELNNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSS  389 (514)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~  389 (514)
                      ..+......+......+....+.+.+....+          .+.........+.++..+++.++++++.||+|||+.+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~  347 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII  347 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence            2233333344444455556666666654332          344344555667788899999999999999999999988


Q ss_pred             HHHHHHHHhhhhhc---ccCc-chhHHHHHH-HHhhhcccccceeeccccccCcchhhHHHHHHHHHHHHhHhHHHHHHH
Q 010268          390 MFFCCCIFLVPLLF---QQPK-GLTTGLLFG-ARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRIGGMVCPLVAV  464 (514)
Q Consensus       390 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~p~i~g  464 (514)
                      +...+.++++.+..   .... +...+..++ ......+..++.+.+.+|++|++.|+++.|+.+.++++++++++.+.+
T Consensus       348 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p  427 (491)
T 4gc0_A          348 GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP  427 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777776655432   1222 222222222 222333445777889999999999999999999999999999999887


Q ss_pred             HHHh------hcCchhHHHHHHHHHHHHHHHhhcccccccCcCCCCCC
Q 010268          465 ALVH------GCHQTAALILFELVILLSGISVLLFPFETTGRGLSDSL  506 (514)
Q Consensus       465 ~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (514)
                      .+.+      ..+....+++++++++++.++.+++.||||++++||.+
T Consensus       428 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          428 MMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence            7644      23455678889999999999999999999999988754
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 3e-11
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 3e-06
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 5e-09
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 28/227 (12%), Positives = 66/227 (29%), Gaps = 8/227 (3%)

Query: 23  FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAY 82
           + + +  +      G+ +  +     +   P +      S        S +        +
Sbjct: 19  YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKF 77

Query: 83  SWGIVSDNFGRRKGFLITAIVTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVL 137
             G VSD    R       I+ +A  L   F P    +  ++     L G   G G P  
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 138 ASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGI--AWLVMPRLGWRWLLGLSAFPSSLL 195
               + +     RG  + ++     VG  +   +    +         L   +     + 
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 196 LLLYSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDW 242
           L  +++  ++P+   L           +   +    +L +  +   +
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 244
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.98
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.59
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.55
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-38  Score=311.81  Aligned_cols=403  Identities=15%  Similarity=0.134  Sum_probs=295.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHHHHHhhhhHHhhhhhhCChHHHHHHHH
Q 010268           23 FGKFQLCVLAYAGMGWISEAMEMMLLSFVGPAVQSLWHLSPNQESLITSVVFAGMLVGAYSWGIVSDNFGRRKGFLITAI  102 (514)
Q Consensus        23 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~i~s~~~~~~~i~~~~~G~l~Dr~G~r~~l~~~~~  102 (514)
                      .++++|.++..++++++..++++..++.+.|.+. ++|+|.+++|++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3567888888899999999999989999999875 589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh----hHHHHHHHHHHHhhhccch-hhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010268          103 VTSAAGLLSAFAP----NYYLLLFFRCLVGLGLGGG-PVLASWFLEFIPAPNRGFWMVIFQTFWTVGTILEAGIAWLVMP  177 (514)
Q Consensus       103 ~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~l~~  177 (514)
                      +.+++.+++++++    +++.+++.|++.|++.+.. +...+++.|++|+++|++++++.+.+..+|.+++|.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999888764    6778999999999999887 7778999999999999999999999999999999998887665


Q ss_pred             c-cchHHHHHHhHHHHHHHHHH-HHHccCChhhhhccCCchHHHHHHHHHHHHhCCCCCCCCCCCchhhhhhhhhcccCC
Q 010268          178 R-LGWRWLLGLSAFPSSLLLLL-YSVTPESPRYLCLKGRTAEARHVLEKIAKINGTKLPSGNLVSDWEHELQNKSLLSSS  255 (514)
Q Consensus       178 ~-~gw~~~f~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (514)
                      . .+||+.|++.+++.++..++ +++.++.|+........+.                                      
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------  219 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------------------------------  219 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------------------------------
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh--------------------------------------
Confidence            4 47999999988887776555 5555655532111100000                                      


Q ss_pred             CCCCCCCccccccCCCchhHhhhhccCCccccccccccchhhHHHHhhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010268          256 SNEDDTTPKEMARDEDSISEAKEMKSEDSTSTLANSNMGGITALLILLSPELIKSTLLLWLVFFGNAFSYYGLVLLTTEL  335 (514)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (514)
                                 ++++.+...+..++          +...+....+..+++   +.++......++.....+....+.+.+
T Consensus       220 -----------~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (447)
T d1pw4a_         220 -----------KNDYPDDYNEKAEQ----------ELTAKQIFMQYVLPN---KLLWYIAIANVFVYLLRYGILDWSPTY  275 (447)
T ss_dssp             -----------CCC-----------------------CCTHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------hhhcccchhhcccc----------ccchhhHHHHHHHcC---chHHHHHHHhhhhhhhhhcchhhhhhh
Confidence                       00000000000000          000111134444444   334444445555556666677777777


Q ss_pred             hcCccccccccccCCCcccCcccchhhhhhchhhHHHHHHHHHHHHhhHHHHHHHHH---HHHHHhhhhh--cccCcchh
Q 010268          336 NNGQNKCVSNELQSGKSRDINYGDVFITSFAEFPGLLLAAAMVDRLGRKLSMSSMFF---CCCIFLVPLL--FQQPKGLT  410 (514)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~  410 (514)
                      ..+..         +.+....+....+..+..+++.++.|++.||++|++.......   +..+..+.+.  ...+.+..
T Consensus       276 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         276 LKEVK---------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             BTTBS---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             ccccc---------ccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            65432         3666677888888899999999999999999987643322222   2222222222  23344555


Q ss_pred             HHHHHHHHhhhcccccceeeccccccCcchhhHHHHHHHHHHHH-hHhHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 010268          411 TGLLFGARICITVTFTVVYVYAPEIYPTSVRTTGVGVASSIGRI-GGMVCPLVAVALVHGCHQTAALILFELVILLSGIS  489 (514)
Q Consensus       411 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~p~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  489 (514)
                      .+..++.|++.++..+....+..|.+|++.|+++.|+.+.+.++ |..++|.+.|.+.|..|+...+.+.+++.+++.++
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            66667777777788888889999999999999999999998887 55678999999999999988888887777777666


Q ss_pred             hhcccccc
Q 010268          490 VLLFPFET  497 (514)
Q Consensus       490 ~~~~~~~~  497 (514)
                      .+++.+++
T Consensus       427 ~~~~~~~~  434 (447)
T d1pw4a_         427 LIVVMIGE  434 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            65554333
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure